Multiple sequence alignment - TraesCS2B01G392000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G392000 chr2B 100.000 2213 0 0 1 2213 556425396 556427608 0.000000e+00 4087.0
1 TraesCS2B01G392000 chr2B 100.000 90 0 0 481 570 556425788 556425877 1.360000e-37 167.0
2 TraesCS2B01G392000 chr2B 100.000 90 0 0 393 482 556425876 556425965 1.360000e-37 167.0
3 TraesCS2B01G392000 chr2D 86.605 754 34 30 1493 2213 475458655 475459374 0.000000e+00 771.0
4 TraesCS2B01G392000 chr2D 85.736 666 28 30 1481 2113 475458024 475458655 1.850000e-180 641.0
5 TraesCS2B01G392000 chr2D 92.857 280 19 1 1007 1286 475457748 475458026 2.650000e-109 405.0
6 TraesCS2B01G392000 chr2D 82.005 439 41 23 69 471 475456846 475457282 2.720000e-89 339.0
7 TraesCS2B01G392000 chr2D 80.328 305 49 10 65 363 190188575 190188276 1.030000e-53 220.0
8 TraesCS2B01G392000 chr2D 80.919 283 25 11 481 748 475457204 475457472 1.730000e-46 196.0
9 TraesCS2B01G392000 chr2D 76.289 194 45 1 675 867 107366045 107366238 3.890000e-18 102.0
10 TraesCS2B01G392000 chr2A 94.737 342 13 3 953 1291 617715738 617716077 5.410000e-146 527.0
11 TraesCS2B01G392000 chr2A 83.056 301 43 8 69 363 394400294 394400592 1.300000e-67 267.0
12 TraesCS2B01G392000 chr2A 78.744 414 44 20 1821 2213 617716325 617716715 1.020000e-58 237.0
13 TraesCS2B01G392000 chr2A 82.213 253 16 11 1481 1725 617716070 617716301 8.070000e-45 191.0
14 TraesCS2B01G392000 chr2A 91.176 68 6 0 481 548 617715453 617715520 2.340000e-15 93.5
15 TraesCS2B01G392000 chr6B 98.429 191 3 0 1290 1480 503998740 503998930 9.790000e-89 337.0
16 TraesCS2B01G392000 chr6B 92.632 190 13 1 1292 1481 96682235 96682423 2.800000e-69 272.0
17 TraesCS2B01G392000 chr6B 91.795 195 12 1 1294 1484 40886023 40886217 3.620000e-68 268.0
18 TraesCS2B01G392000 chr5B 96.809 188 6 0 1293 1480 476799291 476799104 4.590000e-82 315.0
19 TraesCS2B01G392000 chr3B 96.335 191 6 1 1291 1480 71028741 71028551 1.650000e-81 313.0
20 TraesCS2B01G392000 chr3B 80.656 305 42 15 69 367 167771690 167771397 1.030000e-53 220.0
21 TraesCS2B01G392000 chr4B 95.812 191 8 0 1292 1482 464882970 464882780 2.130000e-80 309.0
22 TraesCS2B01G392000 chr4B 94.845 194 6 1 1293 1482 79355682 79355489 1.280000e-77 300.0
23 TraesCS2B01G392000 chr5A 83.389 301 42 6 69 363 343601401 343601103 2.800000e-69 272.0
24 TraesCS2B01G392000 chr1B 83.113 302 39 8 69 366 622845702 622845409 4.690000e-67 265.0
25 TraesCS2B01G392000 chr7D 84.307 274 37 6 94 363 139193638 139193367 1.690000e-66 263.0
26 TraesCS2B01G392000 chr7A 81.063 301 46 9 69 363 524020 523725 1.710000e-56 230.0
27 TraesCS2B01G392000 chr5D 80.808 297 51 5 69 361 458763148 458763442 6.150000e-56 228.0
28 TraesCS2B01G392000 chr7B 86.842 190 23 2 1291 1480 420086797 420086984 6.190000e-51 211.0
29 TraesCS2B01G392000 chr7B 90.260 154 15 0 1292 1445 208803137 208803290 3.730000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G392000 chr2B 556425396 556427608 2212 False 1473.666667 4087 100.0000 1 2213 3 chr2B.!!$F1 2212
1 TraesCS2B01G392000 chr2D 475456846 475459374 2528 False 470.400000 771 85.6244 69 2213 5 chr2D.!!$F2 2144
2 TraesCS2B01G392000 chr2A 617715453 617716715 1262 False 262.125000 527 86.7175 481 2213 4 chr2A.!!$F2 1732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 492 0.039798 CATGTGCAGCAGTGTTCCAC 60.04 55.0 0.0 0.0 34.1 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1356 1547 0.03601 CTGGCGTCTTTGATCACCCT 60.036 55.0 0.0 0.0 0.0 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.591715 GTGTTGCTGCCCAGACGT 60.592 61.111 0.00 0.00 0.00 4.34
18 19 2.280797 TGTTGCTGCCCAGACGTC 60.281 61.111 7.70 7.70 0.00 4.34
19 20 2.031163 GTTGCTGCCCAGACGTCT 59.969 61.111 13.58 13.58 0.00 4.18
20 21 2.031012 TTGCTGCCCAGACGTCTG 59.969 61.111 33.87 33.87 43.40 3.51
21 22 2.506957 TTGCTGCCCAGACGTCTGA 61.507 57.895 40.21 23.24 46.59 3.27
22 23 1.830587 TTGCTGCCCAGACGTCTGAT 61.831 55.000 40.21 8.70 46.59 2.90
23 24 1.078848 GCTGCCCAGACGTCTGATT 60.079 57.895 40.21 8.29 46.59 2.57
24 25 1.086634 GCTGCCCAGACGTCTGATTC 61.087 60.000 40.21 27.98 46.59 2.52
25 26 0.247460 CTGCCCAGACGTCTGATTCA 59.753 55.000 40.21 30.29 46.59 2.57
26 27 0.904649 TGCCCAGACGTCTGATTCAT 59.095 50.000 40.21 6.25 46.59 2.57
27 28 1.293924 GCCCAGACGTCTGATTCATG 58.706 55.000 40.21 24.43 46.59 3.07
28 29 1.406069 GCCCAGACGTCTGATTCATGT 60.406 52.381 40.21 4.63 46.59 3.21
29 30 2.936993 GCCCAGACGTCTGATTCATGTT 60.937 50.000 40.21 3.82 46.59 2.71
30 31 2.932614 CCCAGACGTCTGATTCATGTTC 59.067 50.000 40.21 0.05 46.59 3.18
31 32 3.588955 CCAGACGTCTGATTCATGTTCA 58.411 45.455 40.21 0.00 46.59 3.18
32 33 4.186926 CCAGACGTCTGATTCATGTTCAT 58.813 43.478 40.21 2.56 46.59 2.57
33 34 4.033702 CCAGACGTCTGATTCATGTTCATG 59.966 45.833 40.21 18.75 46.59 3.07
34 35 4.033702 CAGACGTCTGATTCATGTTCATGG 59.966 45.833 36.73 6.86 46.59 3.66
35 36 3.935203 GACGTCTGATTCATGTTCATGGT 59.065 43.478 8.70 2.91 0.00 3.55
36 37 3.686241 ACGTCTGATTCATGTTCATGGTG 59.314 43.478 12.02 0.94 0.00 4.17
37 38 3.934579 CGTCTGATTCATGTTCATGGTGA 59.065 43.478 12.02 1.25 0.00 4.02
38 39 4.392754 CGTCTGATTCATGTTCATGGTGAA 59.607 41.667 12.02 0.00 36.42 3.18
39 40 5.106594 CGTCTGATTCATGTTCATGGTGAAA 60.107 40.000 12.02 1.10 38.22 2.69
40 41 6.568271 CGTCTGATTCATGTTCATGGTGAAAA 60.568 38.462 12.02 0.78 38.22 2.29
41 42 6.805271 GTCTGATTCATGTTCATGGTGAAAAG 59.195 38.462 12.02 2.85 38.22 2.27
42 43 6.028146 TGATTCATGTTCATGGTGAAAAGG 57.972 37.500 12.02 0.00 38.22 3.11
43 44 3.940209 TCATGTTCATGGTGAAAAGGC 57.060 42.857 12.02 0.00 38.22 4.35
44 45 3.229293 TCATGTTCATGGTGAAAAGGCA 58.771 40.909 12.02 0.00 38.22 4.75
45 46 3.640498 TCATGTTCATGGTGAAAAGGCAA 59.360 39.130 12.02 0.00 38.22 4.52
46 47 3.451141 TGTTCATGGTGAAAAGGCAAC 57.549 42.857 0.00 0.00 38.22 4.17
47 48 2.762887 TGTTCATGGTGAAAAGGCAACA 59.237 40.909 0.00 0.00 38.22 3.33
48 49 3.123050 GTTCATGGTGAAAAGGCAACAC 58.877 45.455 0.00 0.00 38.48 3.32
49 50 1.336440 TCATGGTGAAAAGGCAACACG 59.664 47.619 0.00 0.00 38.48 4.49
50 51 1.336440 CATGGTGAAAAGGCAACACGA 59.664 47.619 0.00 0.00 38.48 4.35
51 52 1.464734 TGGTGAAAAGGCAACACGAA 58.535 45.000 0.00 0.00 41.41 3.85
52 53 2.028130 TGGTGAAAAGGCAACACGAAT 58.972 42.857 0.00 0.00 41.41 3.34
53 54 3.215151 TGGTGAAAAGGCAACACGAATA 58.785 40.909 0.00 0.00 41.41 1.75
54 55 3.003897 TGGTGAAAAGGCAACACGAATAC 59.996 43.478 0.00 0.00 41.41 1.89
55 56 3.252458 GGTGAAAAGGCAACACGAATACT 59.748 43.478 0.00 0.00 41.41 2.12
56 57 4.261447 GGTGAAAAGGCAACACGAATACTT 60.261 41.667 0.00 0.00 41.41 2.24
57 58 5.278604 GTGAAAAGGCAACACGAATACTTT 58.721 37.500 0.00 0.00 41.41 2.66
58 59 6.432107 GTGAAAAGGCAACACGAATACTTTA 58.568 36.000 0.00 0.00 41.41 1.85
59 60 6.577427 GTGAAAAGGCAACACGAATACTTTAG 59.423 38.462 0.00 0.00 41.41 1.85
60 61 6.483974 TGAAAAGGCAACACGAATACTTTAGA 59.516 34.615 0.00 0.00 41.41 2.10
61 62 6.870971 AAAGGCAACACGAATACTTTAGAA 57.129 33.333 0.00 0.00 41.41 2.10
62 63 5.857822 AGGCAACACGAATACTTTAGAAC 57.142 39.130 0.00 0.00 41.41 3.01
63 64 4.694037 AGGCAACACGAATACTTTAGAACC 59.306 41.667 0.00 0.00 41.41 3.62
64 65 4.453136 GGCAACACGAATACTTTAGAACCA 59.547 41.667 0.00 0.00 0.00 3.67
65 66 5.390567 GGCAACACGAATACTTTAGAACCAG 60.391 44.000 0.00 0.00 0.00 4.00
66 67 5.407387 GCAACACGAATACTTTAGAACCAGA 59.593 40.000 0.00 0.00 0.00 3.86
67 68 6.092259 GCAACACGAATACTTTAGAACCAGAT 59.908 38.462 0.00 0.00 0.00 2.90
121 124 6.598753 TTTTACTTTGACGAAGTTCAGAGG 57.401 37.500 13.34 0.00 46.34 3.69
122 125 5.524971 TTACTTTGACGAAGTTCAGAGGA 57.475 39.130 13.34 0.00 46.34 3.71
249 253 9.884465 CTCTACAAATCTGGTCAAACTTAAAAG 57.116 33.333 0.00 0.00 0.00 2.27
252 256 6.756542 ACAAATCTGGTCAAACTTAAAAGTGC 59.243 34.615 0.00 0.00 39.66 4.40
300 305 7.559897 ACACCATATATTTTGAAACGAAGGGAT 59.440 33.333 0.00 0.00 0.00 3.85
301 306 9.062524 CACCATATATTTTGAAACGAAGGGATA 57.937 33.333 0.00 0.00 0.00 2.59
328 337 6.449448 TTTTTACGAAAACACAACAACACC 57.551 33.333 0.00 0.00 30.07 4.16
329 338 4.761235 TTACGAAAACACAACAACACCA 57.239 36.364 0.00 0.00 0.00 4.17
330 339 3.644884 ACGAAAACACAACAACACCAA 57.355 38.095 0.00 0.00 0.00 3.67
331 340 3.310246 ACGAAAACACAACAACACCAAC 58.690 40.909 0.00 0.00 0.00 3.77
332 341 3.243434 ACGAAAACACAACAACACCAACA 60.243 39.130 0.00 0.00 0.00 3.33
333 342 3.363426 CGAAAACACAACAACACCAACAG 59.637 43.478 0.00 0.00 0.00 3.16
334 343 2.362169 AACACAACAACACCAACAGC 57.638 45.000 0.00 0.00 0.00 4.40
335 344 1.252175 ACACAACAACACCAACAGCA 58.748 45.000 0.00 0.00 0.00 4.41
339 348 1.202114 CAACAACACCAACAGCACAGT 59.798 47.619 0.00 0.00 0.00 3.55
343 352 3.508012 ACAACACCAACAGCACAGTAAAA 59.492 39.130 0.00 0.00 0.00 1.52
345 354 2.096819 ACACCAACAGCACAGTAAAACG 59.903 45.455 0.00 0.00 0.00 3.60
350 359 0.579630 CAGCACAGTAAAACGCGTCA 59.420 50.000 14.44 0.00 0.00 4.35
368 377 4.933400 GCGTCAAACCCTTCTAGTTAATGA 59.067 41.667 0.00 0.00 0.00 2.57
373 382 8.793592 GTCAAACCCTTCTAGTTAATGAACAAT 58.206 33.333 0.00 0.00 38.10 2.71
374 383 8.792633 TCAAACCCTTCTAGTTAATGAACAATG 58.207 33.333 0.00 0.00 38.10 2.82
375 384 8.576442 CAAACCCTTCTAGTTAATGAACAATGT 58.424 33.333 0.00 0.00 38.10 2.71
376 385 9.802039 AAACCCTTCTAGTTAATGAACAATGTA 57.198 29.630 0.00 0.00 38.10 2.29
377 386 9.449719 AACCCTTCTAGTTAATGAACAATGTAG 57.550 33.333 0.00 0.00 38.10 2.74
378 387 8.603304 ACCCTTCTAGTTAATGAACAATGTAGT 58.397 33.333 0.00 0.00 38.10 2.73
392 435 1.191535 TGTAGTAGCCCTCGTGCATT 58.808 50.000 0.00 0.00 0.00 3.56
393 436 1.134818 TGTAGTAGCCCTCGTGCATTG 60.135 52.381 0.00 0.00 0.00 2.82
394 437 0.179084 TAGTAGCCCTCGTGCATTGC 60.179 55.000 0.46 0.46 0.00 3.56
395 438 2.124736 TAGCCCTCGTGCATTGCC 60.125 61.111 6.12 0.00 0.00 4.52
396 439 3.697439 TAGCCCTCGTGCATTGCCC 62.697 63.158 6.12 0.00 0.00 5.36
398 441 2.440796 CCCTCGTGCATTGCCCAT 60.441 61.111 6.12 0.00 0.00 4.00
399 442 2.053865 CCCTCGTGCATTGCCCATT 61.054 57.895 6.12 0.00 0.00 3.16
400 443 0.751277 CCCTCGTGCATTGCCCATTA 60.751 55.000 6.12 0.00 0.00 1.90
401 444 0.664761 CCTCGTGCATTGCCCATTAG 59.335 55.000 6.12 0.00 0.00 1.73
402 445 1.382522 CTCGTGCATTGCCCATTAGT 58.617 50.000 6.12 0.00 0.00 2.24
403 446 1.331756 CTCGTGCATTGCCCATTAGTC 59.668 52.381 6.12 0.00 0.00 2.59
404 447 1.093972 CGTGCATTGCCCATTAGTCA 58.906 50.000 6.12 0.00 0.00 3.41
405 448 1.064505 CGTGCATTGCCCATTAGTCAG 59.935 52.381 6.12 0.00 0.00 3.51
406 449 1.105457 TGCATTGCCCATTAGTCAGC 58.895 50.000 6.12 0.00 0.00 4.26
407 450 1.341285 TGCATTGCCCATTAGTCAGCT 60.341 47.619 6.12 0.00 0.00 4.24
408 451 1.753073 GCATTGCCCATTAGTCAGCTT 59.247 47.619 0.00 0.00 0.00 3.74
409 452 2.223665 GCATTGCCCATTAGTCAGCTTC 60.224 50.000 0.00 0.00 0.00 3.86
410 453 3.285484 CATTGCCCATTAGTCAGCTTCT 58.715 45.455 0.00 0.00 0.00 2.85
411 454 4.454678 CATTGCCCATTAGTCAGCTTCTA 58.545 43.478 0.00 0.00 0.00 2.10
412 455 4.778213 TTGCCCATTAGTCAGCTTCTAT 57.222 40.909 0.00 0.00 0.00 1.98
413 456 4.077300 TGCCCATTAGTCAGCTTCTATG 57.923 45.455 0.00 0.00 0.00 2.23
414 457 3.711190 TGCCCATTAGTCAGCTTCTATGA 59.289 43.478 0.00 0.00 0.00 2.15
415 458 4.061596 GCCCATTAGTCAGCTTCTATGAC 58.938 47.826 0.00 0.00 46.01 3.06
421 464 3.601443 GTCAGCTTCTATGACACCACT 57.399 47.619 1.37 0.00 45.18 4.00
422 465 3.931578 GTCAGCTTCTATGACACCACTT 58.068 45.455 1.37 0.00 45.18 3.16
423 466 5.073311 GTCAGCTTCTATGACACCACTTA 57.927 43.478 1.37 0.00 45.18 2.24
424 467 5.665459 GTCAGCTTCTATGACACCACTTAT 58.335 41.667 1.37 0.00 45.18 1.73
425 468 6.806751 GTCAGCTTCTATGACACCACTTATA 58.193 40.000 1.37 0.00 45.18 0.98
426 469 7.265673 GTCAGCTTCTATGACACCACTTATAA 58.734 38.462 1.37 0.00 45.18 0.98
427 470 7.764443 GTCAGCTTCTATGACACCACTTATAAA 59.236 37.037 1.37 0.00 45.18 1.40
428 471 7.981789 TCAGCTTCTATGACACCACTTATAAAG 59.018 37.037 0.00 0.00 0.00 1.85
429 472 7.766278 CAGCTTCTATGACACCACTTATAAAGT 59.234 37.037 0.00 0.00 44.06 2.66
430 473 7.982354 AGCTTCTATGACACCACTTATAAAGTC 59.018 37.037 0.00 0.00 40.46 3.01
431 474 7.764443 GCTTCTATGACACCACTTATAAAGTCA 59.236 37.037 0.00 0.00 40.46 3.41
432 475 9.823647 CTTCTATGACACCACTTATAAAGTCAT 57.176 33.333 10.25 10.25 45.48 3.06
433 476 9.599866 TTCTATGACACCACTTATAAAGTCATG 57.400 33.333 14.14 6.38 43.95 3.07
434 477 8.758829 TCTATGACACCACTTATAAAGTCATGT 58.241 33.333 14.14 5.55 43.95 3.21
435 478 7.615582 ATGACACCACTTATAAAGTCATGTG 57.384 36.000 0.00 9.63 42.96 3.21
436 479 5.411361 TGACACCACTTATAAAGTCATGTGC 59.589 40.000 9.18 6.03 40.46 4.57
437 480 5.312895 ACACCACTTATAAAGTCATGTGCA 58.687 37.500 10.93 0.00 40.46 4.57
438 481 5.412594 ACACCACTTATAAAGTCATGTGCAG 59.587 40.000 10.93 0.00 40.46 4.41
439 482 4.396166 ACCACTTATAAAGTCATGTGCAGC 59.604 41.667 0.00 0.00 40.46 5.25
440 483 4.395854 CCACTTATAAAGTCATGTGCAGCA 59.604 41.667 0.00 0.00 40.46 4.41
441 484 5.448225 CCACTTATAAAGTCATGTGCAGCAG 60.448 44.000 0.00 0.00 40.46 4.24
442 485 5.122869 CACTTATAAAGTCATGTGCAGCAGT 59.877 40.000 0.00 0.00 40.46 4.40
443 486 5.122869 ACTTATAAAGTCATGTGCAGCAGTG 59.877 40.000 0.00 0.00 37.02 3.66
444 487 1.683943 AAAGTCATGTGCAGCAGTGT 58.316 45.000 0.00 0.00 0.00 3.55
445 488 1.683943 AAGTCATGTGCAGCAGTGTT 58.316 45.000 0.00 0.00 0.00 3.32
446 489 1.233019 AGTCATGTGCAGCAGTGTTC 58.767 50.000 0.00 0.00 0.00 3.18
447 490 0.239347 GTCATGTGCAGCAGTGTTCC 59.761 55.000 0.00 0.00 0.00 3.62
448 491 0.179023 TCATGTGCAGCAGTGTTCCA 60.179 50.000 0.00 0.00 0.00 3.53
449 492 0.039798 CATGTGCAGCAGTGTTCCAC 60.040 55.000 0.00 0.00 34.10 4.02
450 493 0.179009 ATGTGCAGCAGTGTTCCACT 60.179 50.000 2.55 0.00 46.51 4.00
451 494 0.467804 TGTGCAGCAGTGTTCCACTA 59.532 50.000 2.55 0.00 43.43 2.74
452 495 1.151668 GTGCAGCAGTGTTCCACTAG 58.848 55.000 0.00 0.00 43.43 2.57
453 496 0.603707 TGCAGCAGTGTTCCACTAGC 60.604 55.000 0.00 4.09 43.43 3.42
454 497 0.321122 GCAGCAGTGTTCCACTAGCT 60.321 55.000 12.43 12.43 43.43 3.32
455 498 1.066858 GCAGCAGTGTTCCACTAGCTA 60.067 52.381 15.73 0.00 43.43 3.32
456 499 2.419297 GCAGCAGTGTTCCACTAGCTAT 60.419 50.000 15.73 0.68 43.43 2.97
457 500 3.193263 CAGCAGTGTTCCACTAGCTATG 58.807 50.000 15.73 0.00 43.43 2.23
458 501 1.936547 GCAGTGTTCCACTAGCTATGC 59.063 52.381 0.00 0.00 43.43 3.14
459 502 2.419297 GCAGTGTTCCACTAGCTATGCT 60.419 50.000 0.00 0.00 43.43 3.79
460 503 3.181475 GCAGTGTTCCACTAGCTATGCTA 60.181 47.826 0.00 0.00 43.43 3.49
461 504 4.363999 CAGTGTTCCACTAGCTATGCTAC 58.636 47.826 0.00 0.00 43.43 3.58
462 505 4.023980 AGTGTTCCACTAGCTATGCTACA 58.976 43.478 0.00 0.41 43.46 2.74
463 506 4.651503 AGTGTTCCACTAGCTATGCTACAT 59.348 41.667 0.00 0.00 43.46 2.29
464 507 4.985409 GTGTTCCACTAGCTATGCTACATC 59.015 45.833 0.00 0.00 40.44 3.06
465 508 4.895889 TGTTCCACTAGCTATGCTACATCT 59.104 41.667 0.00 0.00 40.44 2.90
466 509 6.016192 GTGTTCCACTAGCTATGCTACATCTA 60.016 42.308 0.00 0.00 40.44 1.98
467 510 6.016192 TGTTCCACTAGCTATGCTACATCTAC 60.016 42.308 0.00 0.00 40.44 2.59
468 511 5.882040 TCCACTAGCTATGCTACATCTACT 58.118 41.667 0.00 0.00 40.44 2.57
469 512 7.017319 TCCACTAGCTATGCTACATCTACTA 57.983 40.000 0.00 0.00 40.44 1.82
470 513 7.459234 TCCACTAGCTATGCTACATCTACTAA 58.541 38.462 0.00 0.00 40.44 2.24
471 514 8.110271 TCCACTAGCTATGCTACATCTACTAAT 58.890 37.037 0.00 0.00 40.44 1.73
472 515 8.744652 CCACTAGCTATGCTACATCTACTAATT 58.255 37.037 0.00 0.00 40.44 1.40
477 520 9.535170 AGCTATGCTACATCTACTAATTAAGGA 57.465 33.333 0.00 0.00 36.99 3.36
478 521 9.575783 GCTATGCTACATCTACTAATTAAGGAC 57.424 37.037 0.00 0.00 0.00 3.85
489 532 8.375506 TCTACTAATTAAGGACATGCCCATTAG 58.624 37.037 12.35 12.35 37.52 1.73
492 535 4.853468 TTAAGGACATGCCCATTAGTCA 57.147 40.909 0.00 0.00 37.37 3.41
526 569 5.412594 ACACCACTTATAAAGTCATGTGCAG 59.587 40.000 10.93 0.00 40.46 4.41
559 602 8.110271 TCCACTAGCTATGCTACATCTACTAAT 58.890 37.037 0.00 0.00 40.44 1.73
560 603 8.744652 CCACTAGCTATGCTACATCTACTAATT 58.255 37.037 0.00 0.00 40.44 1.40
571 614 9.765795 GCTACATCTACTAATTAAGGACATGTT 57.234 33.333 0.00 0.00 0.00 2.71
615 658 5.712917 TCAATCCGTAGCATTTTTAGGGTTT 59.287 36.000 0.00 0.00 0.00 3.27
637 694 2.176546 CTTGCACAACGGGATGCG 59.823 61.111 0.00 0.00 45.13 4.73
681 738 1.272258 CCTAACCATGGAAAACCCGGT 60.272 52.381 21.47 0.00 37.93 5.28
685 742 1.003112 CATGGAAAACCCGGTCCGA 60.003 57.895 14.39 0.00 36.65 4.55
692 749 4.779733 ACCCGGTCCGATCAGCCT 62.780 66.667 14.39 0.00 0.00 4.58
693 750 4.227134 CCCGGTCCGATCAGCCTG 62.227 72.222 14.39 0.00 0.00 4.85
748 820 2.450476 CATGGGCCTAAGTTTTGAGCT 58.550 47.619 4.53 0.00 0.00 4.09
749 821 2.675658 TGGGCCTAAGTTTTGAGCTT 57.324 45.000 4.53 0.00 0.00 3.74
750 822 2.238521 TGGGCCTAAGTTTTGAGCTTG 58.761 47.619 4.53 0.00 0.00 4.01
752 824 2.229062 GGGCCTAAGTTTTGAGCTTGAC 59.771 50.000 0.84 0.00 0.00 3.18
756 828 0.668535 AAGTTTTGAGCTTGACGGCC 59.331 50.000 0.00 0.00 0.00 6.13
757 829 1.082104 GTTTTGAGCTTGACGGCCG 60.082 57.895 26.86 26.86 0.00 6.13
758 830 1.227704 TTTTGAGCTTGACGGCCGA 60.228 52.632 35.90 7.50 0.00 5.54
759 831 1.227999 TTTTGAGCTTGACGGCCGAG 61.228 55.000 35.90 20.77 0.00 4.63
760 832 2.377628 TTTGAGCTTGACGGCCGAGT 62.378 55.000 35.90 11.07 0.00 4.18
761 833 2.507324 GAGCTTGACGGCCGAGTC 60.507 66.667 35.90 21.19 41.30 3.36
773 845 3.905678 CGAGTCAGGCCGGGCTAG 61.906 72.222 32.31 23.59 0.00 3.42
774 846 3.541713 GAGTCAGGCCGGGCTAGG 61.542 72.222 32.31 19.85 0.00 3.02
782 854 4.424711 CCGGGCTAGGGCTTTGCA 62.425 66.667 5.35 0.00 38.73 4.08
783 855 2.124151 CGGGCTAGGGCTTTGCAT 60.124 61.111 5.35 0.00 38.73 3.96
784 856 1.148273 CGGGCTAGGGCTTTGCATA 59.852 57.895 5.35 0.00 38.73 3.14
785 857 0.250901 CGGGCTAGGGCTTTGCATAT 60.251 55.000 5.35 0.00 38.73 1.78
786 858 1.819305 CGGGCTAGGGCTTTGCATATT 60.819 52.381 5.35 0.00 38.73 1.28
787 859 1.615392 GGGCTAGGGCTTTGCATATTG 59.385 52.381 5.35 0.00 38.73 1.90
791 863 0.684153 AGGGCTTTGCATATTGGCGT 60.684 50.000 0.00 0.00 36.28 5.68
797 869 4.201676 GGCTTTGCATATTGGCGTTTTAAC 60.202 41.667 0.00 0.00 36.28 2.01
826 898 4.475135 GCCCAAGGCCCGAGTCTC 62.475 72.222 0.00 0.00 44.06 3.36
827 899 4.148825 CCCAAGGCCCGAGTCTCG 62.149 72.222 15.53 15.53 40.07 4.04
828 900 3.068691 CCAAGGCCCGAGTCTCGA 61.069 66.667 23.74 0.00 43.74 4.04
829 901 2.427245 CCAAGGCCCGAGTCTCGAT 61.427 63.158 23.74 3.78 43.74 3.59
830 902 1.227089 CAAGGCCCGAGTCTCGATG 60.227 63.158 23.74 14.52 43.74 3.84
852 924 0.245539 CTTTTGCACTGATGGGCCAG 59.754 55.000 13.78 0.00 39.93 4.85
859 931 3.267233 TGATGGGCCAGGCTTGGT 61.267 61.111 17.25 0.00 46.80 3.67
874 946 3.849911 GCTTGGTCCTGAAATTTAAGCC 58.150 45.455 7.94 1.45 34.55 4.35
878 950 4.735369 TGGTCCTGAAATTTAAGCCTGAA 58.265 39.130 0.00 0.00 0.00 3.02
879 951 4.522789 TGGTCCTGAAATTTAAGCCTGAAC 59.477 41.667 0.00 0.00 0.00 3.18
982 1170 0.321475 GCAGCTTCAGTCAGCCTCTT 60.321 55.000 0.00 0.00 41.12 2.85
985 1173 2.495270 CAGCTTCAGTCAGCCTCTTCTA 59.505 50.000 0.00 0.00 41.12 2.10
991 1179 6.406400 GCTTCAGTCAGCCTCTTCTATTTCTA 60.406 42.308 0.00 0.00 33.21 2.10
1229 1420 1.445582 GACTCCGCCGATTTCGTGT 60.446 57.895 0.00 0.00 37.74 4.49
1230 1421 1.683790 GACTCCGCCGATTTCGTGTG 61.684 60.000 0.00 0.00 37.74 3.82
1236 1427 1.779061 CCGATTTCGTGTGGTGACG 59.221 57.895 0.00 0.00 40.83 4.35
1288 1479 3.328505 CCGTGTCGGTTTTATAGTTGGT 58.671 45.455 0.00 0.00 42.73 3.67
1289 1480 4.493547 CCGTGTCGGTTTTATAGTTGGTA 58.506 43.478 0.00 0.00 42.73 3.25
1290 1481 4.563976 CCGTGTCGGTTTTATAGTTGGTAG 59.436 45.833 0.00 0.00 42.73 3.18
1291 1482 4.032104 CGTGTCGGTTTTATAGTTGGTAGC 59.968 45.833 0.00 0.00 0.00 3.58
1292 1483 4.931002 GTGTCGGTTTTATAGTTGGTAGCA 59.069 41.667 0.00 0.00 0.00 3.49
1293 1484 5.063060 GTGTCGGTTTTATAGTTGGTAGCAG 59.937 44.000 0.00 0.00 0.00 4.24
1294 1485 5.173664 GTCGGTTTTATAGTTGGTAGCAGT 58.826 41.667 0.00 0.00 0.00 4.40
1295 1486 5.063060 GTCGGTTTTATAGTTGGTAGCAGTG 59.937 44.000 0.00 0.00 0.00 3.66
1296 1487 4.331717 CGGTTTTATAGTTGGTAGCAGTGG 59.668 45.833 0.00 0.00 0.00 4.00
1297 1488 4.095932 GGTTTTATAGTTGGTAGCAGTGGC 59.904 45.833 0.00 0.00 41.61 5.01
1321 1512 6.041511 CGGAGCATGAATCAGATATTAGAGG 58.958 44.000 0.00 0.00 0.00 3.69
1322 1513 6.347696 GGAGCATGAATCAGATATTAGAGGG 58.652 44.000 0.00 0.00 0.00 4.30
1323 1514 6.310764 AGCATGAATCAGATATTAGAGGGG 57.689 41.667 0.00 0.00 0.00 4.79
1324 1515 5.191323 AGCATGAATCAGATATTAGAGGGGG 59.809 44.000 0.00 0.00 0.00 5.40
1325 1516 5.435291 CATGAATCAGATATTAGAGGGGGC 58.565 45.833 0.00 0.00 0.00 5.80
1326 1517 3.846588 TGAATCAGATATTAGAGGGGGCC 59.153 47.826 0.00 0.00 0.00 5.80
1327 1518 3.585077 ATCAGATATTAGAGGGGGCCA 57.415 47.619 4.39 0.00 0.00 5.36
1328 1519 3.360740 TCAGATATTAGAGGGGGCCAA 57.639 47.619 4.39 0.00 0.00 4.52
1329 1520 2.979678 TCAGATATTAGAGGGGGCCAAC 59.020 50.000 4.39 0.00 0.00 3.77
1330 1521 2.982488 CAGATATTAGAGGGGGCCAACT 59.018 50.000 4.39 1.90 0.00 3.16
1331 1522 2.982488 AGATATTAGAGGGGGCCAACTG 59.018 50.000 4.39 0.00 0.00 3.16
1332 1523 2.579624 TATTAGAGGGGGCCAACTGA 57.420 50.000 4.39 0.00 0.00 3.41
1333 1524 1.216990 ATTAGAGGGGGCCAACTGAG 58.783 55.000 4.39 0.00 0.00 3.35
1334 1525 0.178873 TTAGAGGGGGCCAACTGAGT 60.179 55.000 4.39 0.00 0.00 3.41
1335 1526 0.909610 TAGAGGGGGCCAACTGAGTG 60.910 60.000 4.39 0.00 0.00 3.51
1336 1527 2.450502 AGGGGGCCAACTGAGTGT 60.451 61.111 4.39 0.00 0.00 3.55
1337 1528 1.151899 AGGGGGCCAACTGAGTGTA 60.152 57.895 4.39 0.00 0.00 2.90
1338 1529 0.550147 AGGGGGCCAACTGAGTGTAT 60.550 55.000 4.39 0.00 0.00 2.29
1339 1530 1.209621 GGGGGCCAACTGAGTGTATA 58.790 55.000 4.39 0.00 0.00 1.47
1340 1531 1.774856 GGGGGCCAACTGAGTGTATAT 59.225 52.381 4.39 0.00 0.00 0.86
1341 1532 2.487265 GGGGGCCAACTGAGTGTATATG 60.487 54.545 4.39 0.00 0.00 1.78
1342 1533 2.438021 GGGGCCAACTGAGTGTATATGA 59.562 50.000 4.39 0.00 0.00 2.15
1343 1534 3.467803 GGGCCAACTGAGTGTATATGAC 58.532 50.000 4.39 0.00 0.00 3.06
1344 1535 3.118408 GGGCCAACTGAGTGTATATGACA 60.118 47.826 4.39 0.00 34.94 3.58
1345 1536 4.444876 GGGCCAACTGAGTGTATATGACAT 60.445 45.833 4.39 0.00 41.14 3.06
1346 1537 5.221641 GGGCCAACTGAGTGTATATGACATA 60.222 44.000 4.39 0.00 41.14 2.29
1347 1538 5.928839 GGCCAACTGAGTGTATATGACATAG 59.071 44.000 0.00 0.00 41.14 2.23
1348 1539 6.239317 GGCCAACTGAGTGTATATGACATAGA 60.239 42.308 0.00 0.00 41.14 1.98
1349 1540 7.210174 GCCAACTGAGTGTATATGACATAGAA 58.790 38.462 0.98 0.00 41.14 2.10
1350 1541 7.710907 GCCAACTGAGTGTATATGACATAGAAA 59.289 37.037 0.98 0.00 41.14 2.52
1351 1542 9.599866 CCAACTGAGTGTATATGACATAGAAAA 57.400 33.333 0.98 0.00 41.14 2.29
1353 1544 9.823647 AACTGAGTGTATATGACATAGAAAAGG 57.176 33.333 0.98 0.00 41.14 3.11
1354 1545 7.928706 ACTGAGTGTATATGACATAGAAAAGGC 59.071 37.037 0.98 0.00 41.14 4.35
1355 1546 8.023021 TGAGTGTATATGACATAGAAAAGGCT 57.977 34.615 0.98 0.00 41.14 4.58
1356 1547 9.143155 TGAGTGTATATGACATAGAAAAGGCTA 57.857 33.333 0.98 0.00 41.14 3.93
1357 1548 9.632807 GAGTGTATATGACATAGAAAAGGCTAG 57.367 37.037 0.98 0.00 41.14 3.42
1358 1549 8.589338 AGTGTATATGACATAGAAAAGGCTAGG 58.411 37.037 0.98 0.00 41.14 3.02
1359 1550 7.819900 GTGTATATGACATAGAAAAGGCTAGGG 59.180 40.741 0.98 0.00 41.14 3.53
1360 1551 7.512746 TGTATATGACATAGAAAAGGCTAGGGT 59.487 37.037 0.98 0.00 31.20 4.34
1361 1552 4.487714 TGACATAGAAAAGGCTAGGGTG 57.512 45.455 0.00 0.00 0.00 4.61
1362 1553 4.101114 TGACATAGAAAAGGCTAGGGTGA 58.899 43.478 0.00 0.00 0.00 4.02
1363 1554 4.721776 TGACATAGAAAAGGCTAGGGTGAT 59.278 41.667 0.00 0.00 0.00 3.06
1364 1555 5.163301 TGACATAGAAAAGGCTAGGGTGATC 60.163 44.000 0.00 0.00 0.00 2.92
1365 1556 4.721776 ACATAGAAAAGGCTAGGGTGATCA 59.278 41.667 0.00 0.00 0.00 2.92
1366 1557 5.191722 ACATAGAAAAGGCTAGGGTGATCAA 59.808 40.000 0.00 0.00 0.00 2.57
1367 1558 4.657814 AGAAAAGGCTAGGGTGATCAAA 57.342 40.909 0.00 0.00 0.00 2.69
1368 1559 4.593956 AGAAAAGGCTAGGGTGATCAAAG 58.406 43.478 0.00 0.00 0.00 2.77
1369 1560 4.289672 AGAAAAGGCTAGGGTGATCAAAGA 59.710 41.667 0.00 0.00 0.00 2.52
1370 1561 3.636153 AAGGCTAGGGTGATCAAAGAC 57.364 47.619 0.00 0.00 0.00 3.01
1371 1562 1.482593 AGGCTAGGGTGATCAAAGACG 59.517 52.381 0.00 0.00 0.00 4.18
1372 1563 1.291132 GCTAGGGTGATCAAAGACGC 58.709 55.000 0.00 0.00 0.00 5.19
1373 1564 1.941325 CTAGGGTGATCAAAGACGCC 58.059 55.000 0.00 0.00 36.13 5.68
1374 1565 1.207089 CTAGGGTGATCAAAGACGCCA 59.793 52.381 0.00 0.00 38.28 5.69
1375 1566 0.036010 AGGGTGATCAAAGACGCCAG 60.036 55.000 0.00 0.00 38.28 4.85
1376 1567 0.036388 GGGTGATCAAAGACGCCAGA 60.036 55.000 0.00 0.00 38.28 3.86
1377 1568 1.363744 GGTGATCAAAGACGCCAGAG 58.636 55.000 0.00 0.00 36.77 3.35
1378 1569 1.338200 GGTGATCAAAGACGCCAGAGT 60.338 52.381 0.00 0.00 36.77 3.24
1379 1570 2.094182 GGTGATCAAAGACGCCAGAGTA 60.094 50.000 0.00 0.00 36.77 2.59
1380 1571 3.430929 GGTGATCAAAGACGCCAGAGTAT 60.431 47.826 0.00 0.00 36.77 2.12
1381 1572 4.184629 GTGATCAAAGACGCCAGAGTATT 58.815 43.478 0.00 0.00 0.00 1.89
1382 1573 5.348986 GTGATCAAAGACGCCAGAGTATTA 58.651 41.667 0.00 0.00 0.00 0.98
1383 1574 5.460419 GTGATCAAAGACGCCAGAGTATTAG 59.540 44.000 0.00 0.00 0.00 1.73
1384 1575 5.127194 TGATCAAAGACGCCAGAGTATTAGT 59.873 40.000 0.00 0.00 0.00 2.24
1385 1576 6.320418 TGATCAAAGACGCCAGAGTATTAGTA 59.680 38.462 0.00 0.00 0.00 1.82
1386 1577 6.132791 TCAAAGACGCCAGAGTATTAGTAG 57.867 41.667 0.00 0.00 0.00 2.57
1387 1578 5.884232 TCAAAGACGCCAGAGTATTAGTAGA 59.116 40.000 0.00 0.00 0.00 2.59
1388 1579 6.038382 TCAAAGACGCCAGAGTATTAGTAGAG 59.962 42.308 0.00 0.00 0.00 2.43
1389 1580 3.816523 AGACGCCAGAGTATTAGTAGAGC 59.183 47.826 0.00 0.00 0.00 4.09
1390 1581 3.552875 ACGCCAGAGTATTAGTAGAGCA 58.447 45.455 0.00 0.00 0.00 4.26
1391 1582 3.952323 ACGCCAGAGTATTAGTAGAGCAA 59.048 43.478 0.00 0.00 0.00 3.91
1392 1583 4.585162 ACGCCAGAGTATTAGTAGAGCAAT 59.415 41.667 0.00 0.00 0.00 3.56
1393 1584 5.069251 ACGCCAGAGTATTAGTAGAGCAATT 59.931 40.000 0.00 0.00 0.00 2.32
1394 1585 6.264744 ACGCCAGAGTATTAGTAGAGCAATTA 59.735 38.462 0.00 0.00 0.00 1.40
1395 1586 6.804295 CGCCAGAGTATTAGTAGAGCAATTAG 59.196 42.308 0.00 0.00 0.00 1.73
1396 1587 6.588373 GCCAGAGTATTAGTAGAGCAATTAGC 59.412 42.308 0.00 0.00 46.19 3.09
1418 1609 9.845740 TTAGCAGATAAATAAGAGTATTTGGCA 57.154 29.630 2.66 0.00 39.69 4.92
1419 1610 8.752005 AGCAGATAAATAAGAGTATTTGGCAA 57.248 30.769 0.00 0.00 39.69 4.52
1420 1611 9.189156 AGCAGATAAATAAGAGTATTTGGCAAA 57.811 29.630 16.01 16.01 39.69 3.68
1421 1612 9.971922 GCAGATAAATAAGAGTATTTGGCAAAT 57.028 29.630 26.86 26.86 39.69 2.32
1427 1618 8.829373 AATAAGAGTATTTGGCAAATCTTCCT 57.171 30.769 27.42 18.26 32.38 3.36
1428 1619 6.765915 AAGAGTATTTGGCAAATCTTCCTC 57.234 37.500 27.42 23.82 32.38 3.71
1429 1620 6.072199 AGAGTATTTGGCAAATCTTCCTCT 57.928 37.500 27.42 25.24 32.38 3.69
1430 1621 6.488715 AGAGTATTTGGCAAATCTTCCTCTT 58.511 36.000 27.42 14.42 32.38 2.85
1431 1622 6.376581 AGAGTATTTGGCAAATCTTCCTCTTG 59.623 38.462 27.42 0.00 32.38 3.02
1432 1623 4.813750 ATTTGGCAAATCTTCCTCTTGG 57.186 40.909 19.39 0.00 0.00 3.61
1433 1624 3.524095 TTGGCAAATCTTCCTCTTGGA 57.476 42.857 0.00 0.00 41.36 3.53
1434 1625 6.015918 TATTTGGCAAATCTTCCTCTTGGAA 58.984 36.000 27.42 4.04 39.74 3.53
1458 1649 2.679996 GCCAAGGCCCGGAATTGT 60.680 61.111 13.08 0.00 34.56 2.71
1459 1650 2.710902 GCCAAGGCCCGGAATTGTC 61.711 63.158 13.08 0.00 34.56 3.18
1460 1651 2.052104 CCAAGGCCCGGAATTGTCC 61.052 63.158 0.73 0.00 41.01 4.02
1461 1652 2.052104 CAAGGCCCGGAATTGTCCC 61.052 63.158 0.73 0.00 41.44 4.46
1462 1653 3.296842 AAGGCCCGGAATTGTCCCC 62.297 63.158 0.73 0.00 41.44 4.81
1463 1654 4.055227 GGCCCGGAATTGTCCCCA 62.055 66.667 0.73 0.00 41.44 4.96
1464 1655 2.278738 GCCCGGAATTGTCCCCAT 59.721 61.111 0.73 0.00 41.44 4.00
1465 1656 2.127232 GCCCGGAATTGTCCCCATG 61.127 63.158 0.73 0.00 41.44 3.66
1466 1657 1.612513 CCCGGAATTGTCCCCATGA 59.387 57.895 0.73 0.00 41.44 3.07
1467 1658 0.751643 CCCGGAATTGTCCCCATGAC 60.752 60.000 0.73 0.00 41.44 3.06
1478 1669 4.457496 CCATGACGCTCCGCCACT 62.457 66.667 0.00 0.00 0.00 4.00
1479 1670 3.190849 CATGACGCTCCGCCACTG 61.191 66.667 0.00 0.00 0.00 3.66
1501 1692 3.537580 GTTGGTAGTTCTGGTGTGTGAA 58.462 45.455 0.00 0.00 0.00 3.18
1516 1707 2.821969 GTGTGAAGATCAAGCAATGGGT 59.178 45.455 0.00 0.00 0.00 4.51
1519 1710 4.263462 TGTGAAGATCAAGCAATGGGTACT 60.263 41.667 0.00 0.00 0.00 2.73
1573 1773 5.252547 TCATCTTGTTTCGGAAATGGATGA 58.747 37.500 24.63 24.63 36.86 2.92
1599 1799 0.318445 GATGATGCATTTGCTCGGCC 60.318 55.000 0.00 0.00 42.66 6.13
1637 1837 2.802247 CGTGCCGTGTCATATTCATGAT 59.198 45.455 0.00 0.00 43.03 2.45
1812 2031 8.279970 TCAACCTTAATTATGACATGAACAGG 57.720 34.615 0.00 0.27 0.00 4.00
1813 2032 7.888021 TCAACCTTAATTATGACATGAACAGGT 59.112 33.333 0.00 0.87 0.00 4.00
1814 2033 7.865706 ACCTTAATTATGACATGAACAGGTC 57.134 36.000 11.78 11.78 41.97 3.85
1815 2034 7.633789 ACCTTAATTATGACATGAACAGGTCT 58.366 34.615 17.84 8.33 42.11 3.85
1816 2035 8.768397 ACCTTAATTATGACATGAACAGGTCTA 58.232 33.333 17.84 7.42 42.11 2.59
1817 2036 9.265901 CCTTAATTATGACATGAACAGGTCTAG 57.734 37.037 17.84 6.47 42.11 2.43
1818 2037 9.265901 CTTAATTATGACATGAACAGGTCTAGG 57.734 37.037 17.84 2.24 42.11 3.02
1819 2038 3.550437 ATGACATGAACAGGTCTAGGC 57.450 47.619 17.84 0.00 42.11 3.93
1820 2039 2.540383 TGACATGAACAGGTCTAGGCT 58.460 47.619 17.84 0.00 42.11 4.58
1821 2040 2.234661 TGACATGAACAGGTCTAGGCTG 59.765 50.000 17.84 0.00 42.11 4.85
1822 2041 2.497675 GACATGAACAGGTCTAGGCTGA 59.502 50.000 11.48 0.00 38.89 4.26
1823 2042 2.906389 ACATGAACAGGTCTAGGCTGAA 59.094 45.455 0.00 0.00 0.00 3.02
1824 2043 3.055530 ACATGAACAGGTCTAGGCTGAAG 60.056 47.826 0.00 0.00 0.00 3.02
1825 2044 2.889512 TGAACAGGTCTAGGCTGAAGA 58.110 47.619 0.00 0.00 0.00 2.87
1826 2045 3.239449 TGAACAGGTCTAGGCTGAAGAA 58.761 45.455 0.00 0.00 0.00 2.52
1827 2046 3.840666 TGAACAGGTCTAGGCTGAAGAAT 59.159 43.478 0.00 0.00 0.00 2.40
1828 2047 4.081420 TGAACAGGTCTAGGCTGAAGAATC 60.081 45.833 0.00 0.00 0.00 2.52
1829 2048 2.769095 ACAGGTCTAGGCTGAAGAATCC 59.231 50.000 0.00 0.00 0.00 3.01
1830 2049 2.768527 CAGGTCTAGGCTGAAGAATCCA 59.231 50.000 0.00 0.00 0.00 3.41
1831 2050 3.037549 AGGTCTAGGCTGAAGAATCCAG 58.962 50.000 0.00 0.00 34.88 3.86
1832 2051 3.034635 GGTCTAGGCTGAAGAATCCAGA 58.965 50.000 0.00 0.00 33.65 3.86
1833 2052 3.452627 GGTCTAGGCTGAAGAATCCAGAA 59.547 47.826 0.00 0.00 33.65 3.02
1834 2053 4.102367 GGTCTAGGCTGAAGAATCCAGAAT 59.898 45.833 0.00 0.00 33.65 2.40
1835 2054 5.397334 GGTCTAGGCTGAAGAATCCAGAATT 60.397 44.000 0.00 0.00 33.65 2.17
1836 2055 6.183361 GGTCTAGGCTGAAGAATCCAGAATTA 60.183 42.308 0.00 0.00 33.65 1.40
1837 2056 7.449247 GTCTAGGCTGAAGAATCCAGAATTAT 58.551 38.462 0.00 0.00 33.65 1.28
1838 2057 7.387397 GTCTAGGCTGAAGAATCCAGAATTATG 59.613 40.741 0.00 0.00 33.65 1.90
1839 2058 6.257994 AGGCTGAAGAATCCAGAATTATGA 57.742 37.500 0.54 0.00 33.65 2.15
1840 2059 6.060788 AGGCTGAAGAATCCAGAATTATGAC 58.939 40.000 0.54 0.00 33.65 3.06
1841 2060 5.824624 GGCTGAAGAATCCAGAATTATGACA 59.175 40.000 0.54 0.00 33.65 3.58
1842 2061 6.489361 GGCTGAAGAATCCAGAATTATGACAT 59.511 38.462 0.54 0.00 33.65 3.06
1843 2062 7.361127 GCTGAAGAATCCAGAATTATGACATG 58.639 38.462 0.54 0.00 33.65 3.21
1844 2063 7.228108 GCTGAAGAATCCAGAATTATGACATGA 59.772 37.037 0.54 0.00 33.65 3.07
1845 2064 9.117183 CTGAAGAATCCAGAATTATGACATGAA 57.883 33.333 0.54 0.00 33.65 2.57
1846 2065 8.896744 TGAAGAATCCAGAATTATGACATGAAC 58.103 33.333 0.54 0.00 0.00 3.18
1847 2066 8.812513 AAGAATCCAGAATTATGACATGAACA 57.187 30.769 0.54 0.00 0.00 3.18
1887 2106 5.809001 AGAAATGACATGAAGAGGCAGTAA 58.191 37.500 0.00 0.00 0.00 2.24
1899 2118 3.583086 AGAGGCAGTAAAGAAGGCTACAA 59.417 43.478 0.00 0.00 38.37 2.41
1900 2119 3.935828 GAGGCAGTAAAGAAGGCTACAAG 59.064 47.826 0.00 0.00 38.37 3.16
1901 2120 3.583086 AGGCAGTAAAGAAGGCTACAAGA 59.417 43.478 0.00 0.00 36.31 3.02
1902 2121 4.041691 AGGCAGTAAAGAAGGCTACAAGAA 59.958 41.667 0.00 0.00 36.31 2.52
1903 2122 4.393371 GGCAGTAAAGAAGGCTACAAGAAG 59.607 45.833 0.00 0.00 0.00 2.85
1904 2123 5.238583 GCAGTAAAGAAGGCTACAAGAAGA 58.761 41.667 0.00 0.00 0.00 2.87
1983 2202 3.813166 TGTCTGAAGAAAACGATGGAACC 59.187 43.478 0.00 0.00 0.00 3.62
1989 2828 1.468914 GAAAACGATGGAACCTGGAGC 59.531 52.381 0.00 0.00 0.00 4.70
1998 2837 0.693049 GAACCTGGAGCCTTGGAAGA 59.307 55.000 0.00 0.00 0.00 2.87
2011 2852 3.711704 CCTTGGAAGAATAGGAGCCACTA 59.288 47.826 0.00 0.00 0.00 2.74
2013 2854 3.039011 TGGAAGAATAGGAGCCACTACC 58.961 50.000 0.00 0.00 0.00 3.18
2014 2855 3.039011 GGAAGAATAGGAGCCACTACCA 58.961 50.000 0.00 0.00 0.00 3.25
2016 2857 2.043227 AGAATAGGAGCCACTACCAGC 58.957 52.381 0.00 0.00 0.00 4.85
2023 2864 1.555533 GAGCCACTACCAGCCTAGTTT 59.444 52.381 0.00 0.00 0.00 2.66
2042 2883 4.431035 CGTTGTCACGGGAACACT 57.569 55.556 0.00 0.00 43.16 3.55
2043 2884 3.573569 CGTTGTCACGGGAACACTA 57.426 52.632 0.00 0.00 43.16 2.74
2046 2887 3.577667 CGTTGTCACGGGAACACTATAA 58.422 45.455 0.00 0.00 43.16 0.98
2047 2888 3.611113 CGTTGTCACGGGAACACTATAAG 59.389 47.826 0.00 0.00 43.16 1.73
2048 2889 4.563061 GTTGTCACGGGAACACTATAAGT 58.437 43.478 0.00 0.00 0.00 2.24
2050 2891 5.217978 TGTCACGGGAACACTATAAGTTT 57.782 39.130 0.00 0.00 0.00 2.66
2051 2892 5.613329 TGTCACGGGAACACTATAAGTTTT 58.387 37.500 0.00 0.00 0.00 2.43
2089 2950 3.935315 TCTCTCTGCAAGGAAATGACAG 58.065 45.455 0.00 0.00 0.00 3.51
2095 2956 1.610522 GCAAGGAAATGACAGTGCAGT 59.389 47.619 0.00 0.00 32.29 4.40
2096 2957 2.606308 GCAAGGAAATGACAGTGCAGTG 60.606 50.000 20.11 20.11 32.29 3.66
2113 2974 1.973515 AGTGTGCAGATGGTTCAGAGA 59.026 47.619 0.00 0.00 0.00 3.10
2121 2982 0.681733 ATGGTTCAGAGACGTGCAGT 59.318 50.000 0.00 0.00 0.00 4.40
2191 3052 1.576356 GTGGCGACAGGAGAATCATC 58.424 55.000 0.00 0.00 44.46 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.591715 ACGTCTGGGCAGCAACAC 60.592 61.111 0.00 0.00 0.00 3.32
1 2 2.280797 GACGTCTGGGCAGCAACA 60.281 61.111 8.70 0.00 0.00 3.33
2 3 2.031163 AGACGTCTGGGCAGCAAC 59.969 61.111 19.30 0.00 0.00 4.17
3 4 1.830587 ATCAGACGTCTGGGCAGCAA 61.831 55.000 37.82 21.70 43.91 3.91
4 5 1.830587 AATCAGACGTCTGGGCAGCA 61.831 55.000 37.82 22.38 43.91 4.41
5 6 1.078848 AATCAGACGTCTGGGCAGC 60.079 57.895 37.82 1.84 43.91 5.25
6 7 0.247460 TGAATCAGACGTCTGGGCAG 59.753 55.000 37.82 18.16 43.91 4.85
7 8 0.904649 ATGAATCAGACGTCTGGGCA 59.095 50.000 37.82 31.26 43.91 5.36
8 9 1.293924 CATGAATCAGACGTCTGGGC 58.706 55.000 37.82 27.69 43.91 5.36
9 10 2.680312 ACATGAATCAGACGTCTGGG 57.320 50.000 37.82 23.86 43.91 4.45
10 11 3.588955 TGAACATGAATCAGACGTCTGG 58.411 45.455 37.82 25.40 43.91 3.86
11 12 4.033702 CCATGAACATGAATCAGACGTCTG 59.966 45.833 34.76 34.76 41.90 3.51
12 13 4.186926 CCATGAACATGAATCAGACGTCT 58.813 43.478 13.58 13.58 41.20 4.18
13 14 3.935203 ACCATGAACATGAATCAGACGTC 59.065 43.478 7.70 7.70 41.20 4.34
14 15 3.686241 CACCATGAACATGAATCAGACGT 59.314 43.478 15.21 0.00 41.20 4.34
15 16 3.934579 TCACCATGAACATGAATCAGACG 59.065 43.478 15.21 0.00 41.20 4.18
16 17 5.885230 TTCACCATGAACATGAATCAGAC 57.115 39.130 15.21 0.00 41.20 3.51
17 18 6.071784 CCTTTTCACCATGAACATGAATCAGA 60.072 38.462 15.21 4.19 41.20 3.27
18 19 6.097356 CCTTTTCACCATGAACATGAATCAG 58.903 40.000 15.21 2.22 41.20 2.90
19 20 5.567224 GCCTTTTCACCATGAACATGAATCA 60.567 40.000 15.21 3.88 41.20 2.57
20 21 4.866486 GCCTTTTCACCATGAACATGAATC 59.134 41.667 15.21 0.00 41.20 2.52
21 22 4.283978 TGCCTTTTCACCATGAACATGAAT 59.716 37.500 15.21 1.80 41.20 2.57
22 23 3.640498 TGCCTTTTCACCATGAACATGAA 59.360 39.130 15.21 1.45 41.20 2.57
23 24 3.229293 TGCCTTTTCACCATGAACATGA 58.771 40.909 15.21 0.00 41.20 3.07
24 25 3.663995 TGCCTTTTCACCATGAACATG 57.336 42.857 7.70 7.70 35.89 3.21
25 26 3.387374 TGTTGCCTTTTCACCATGAACAT 59.613 39.130 0.00 0.00 35.89 2.71
26 27 2.762887 TGTTGCCTTTTCACCATGAACA 59.237 40.909 0.00 0.00 35.89 3.18
27 28 3.123050 GTGTTGCCTTTTCACCATGAAC 58.877 45.455 0.00 0.00 35.89 3.18
28 29 2.223688 CGTGTTGCCTTTTCACCATGAA 60.224 45.455 0.00 0.00 34.03 2.57
29 30 1.336440 CGTGTTGCCTTTTCACCATGA 59.664 47.619 0.00 0.00 0.00 3.07
30 31 1.336440 TCGTGTTGCCTTTTCACCATG 59.664 47.619 0.00 0.00 0.00 3.66
31 32 1.686355 TCGTGTTGCCTTTTCACCAT 58.314 45.000 0.00 0.00 0.00 3.55
32 33 1.464734 TTCGTGTTGCCTTTTCACCA 58.535 45.000 0.00 0.00 0.00 4.17
33 34 2.793278 ATTCGTGTTGCCTTTTCACC 57.207 45.000 0.00 0.00 0.00 4.02
34 35 4.483476 AGTATTCGTGTTGCCTTTTCAC 57.517 40.909 0.00 0.00 0.00 3.18
35 36 5.508200 AAAGTATTCGTGTTGCCTTTTCA 57.492 34.783 0.00 0.00 0.00 2.69
36 37 6.894828 TCTAAAGTATTCGTGTTGCCTTTTC 58.105 36.000 0.00 0.00 0.00 2.29
37 38 6.870971 TCTAAAGTATTCGTGTTGCCTTTT 57.129 33.333 0.00 0.00 0.00 2.27
38 39 6.293790 GGTTCTAAAGTATTCGTGTTGCCTTT 60.294 38.462 0.00 0.00 0.00 3.11
39 40 5.180680 GGTTCTAAAGTATTCGTGTTGCCTT 59.819 40.000 0.00 0.00 0.00 4.35
40 41 4.694037 GGTTCTAAAGTATTCGTGTTGCCT 59.306 41.667 0.00 0.00 0.00 4.75
41 42 4.453136 TGGTTCTAAAGTATTCGTGTTGCC 59.547 41.667 0.00 0.00 0.00 4.52
42 43 5.407387 TCTGGTTCTAAAGTATTCGTGTTGC 59.593 40.000 0.00 0.00 0.00 4.17
43 44 7.596749 ATCTGGTTCTAAAGTATTCGTGTTG 57.403 36.000 0.00 0.00 0.00 3.33
44 45 7.980099 CCTATCTGGTTCTAAAGTATTCGTGTT 59.020 37.037 0.00 0.00 0.00 3.32
45 46 7.490000 CCTATCTGGTTCTAAAGTATTCGTGT 58.510 38.462 0.00 0.00 0.00 4.49
46 47 7.932120 CCTATCTGGTTCTAAAGTATTCGTG 57.068 40.000 0.00 0.00 0.00 4.35
228 232 6.980397 AGCACTTTTAAGTTTGACCAGATTTG 59.020 34.615 0.00 0.00 37.08 2.32
233 237 5.743872 GTCAAGCACTTTTAAGTTTGACCAG 59.256 40.000 19.82 1.20 43.87 4.00
237 241 8.898761 TGAATAGTCAAGCACTTTTAAGTTTGA 58.101 29.630 5.91 5.91 37.08 2.69
309 318 4.023450 TGTTGGTGTTGTTGTGTTTTCGTA 60.023 37.500 0.00 0.00 0.00 3.43
311 320 3.309388 TGTTGGTGTTGTTGTGTTTTCG 58.691 40.909 0.00 0.00 0.00 3.46
319 328 1.202114 ACTGTGCTGTTGGTGTTGTTG 59.798 47.619 0.00 0.00 0.00 3.33
320 329 1.544724 ACTGTGCTGTTGGTGTTGTT 58.455 45.000 0.00 0.00 0.00 2.83
322 331 3.773860 TTTACTGTGCTGTTGGTGTTG 57.226 42.857 0.00 0.00 0.00 3.33
324 333 2.096819 CGTTTTACTGTGCTGTTGGTGT 59.903 45.455 0.00 0.00 0.00 4.16
325 334 2.715268 CGTTTTACTGTGCTGTTGGTG 58.285 47.619 0.00 0.00 0.00 4.17
326 335 1.064952 GCGTTTTACTGTGCTGTTGGT 59.935 47.619 0.00 0.00 0.00 3.67
327 336 1.753956 GCGTTTTACTGTGCTGTTGG 58.246 50.000 0.00 0.00 0.00 3.77
328 337 1.267832 ACGCGTTTTACTGTGCTGTTG 60.268 47.619 5.58 0.00 0.00 3.33
329 338 1.004292 GACGCGTTTTACTGTGCTGTT 60.004 47.619 15.53 0.00 0.00 3.16
330 339 0.580104 GACGCGTTTTACTGTGCTGT 59.420 50.000 15.53 0.00 0.00 4.40
331 340 0.579630 TGACGCGTTTTACTGTGCTG 59.420 50.000 15.53 0.00 0.00 4.41
332 341 1.292061 TTGACGCGTTTTACTGTGCT 58.708 45.000 15.53 0.00 0.00 4.40
333 342 1.771291 GTTTGACGCGTTTTACTGTGC 59.229 47.619 15.53 0.00 0.00 4.57
334 343 2.368685 GGTTTGACGCGTTTTACTGTG 58.631 47.619 15.53 0.00 0.00 3.66
335 344 1.331447 GGGTTTGACGCGTTTTACTGT 59.669 47.619 15.53 0.00 0.00 3.55
339 348 2.563702 AGAAGGGTTTGACGCGTTTTA 58.436 42.857 15.53 0.00 36.04 1.52
343 352 0.677842 ACTAGAAGGGTTTGACGCGT 59.322 50.000 13.85 13.85 36.04 6.01
345 354 4.933400 TCATTAACTAGAAGGGTTTGACGC 59.067 41.667 0.00 0.00 0.00 5.19
350 359 8.706322 ACATTGTTCATTAACTAGAAGGGTTT 57.294 30.769 0.00 0.00 36.51 3.27
368 377 2.677037 GCACGAGGGCTACTACATTGTT 60.677 50.000 0.00 0.00 0.00 2.83
373 382 1.134818 CAATGCACGAGGGCTACTACA 60.135 52.381 0.00 0.00 34.04 2.74
374 383 1.571919 CAATGCACGAGGGCTACTAC 58.428 55.000 0.00 0.00 34.04 2.73
375 384 0.179084 GCAATGCACGAGGGCTACTA 60.179 55.000 0.00 0.00 34.04 1.82
376 385 1.450312 GCAATGCACGAGGGCTACT 60.450 57.895 0.00 0.00 34.04 2.57
377 386 2.472909 GGCAATGCACGAGGGCTAC 61.473 63.158 7.79 0.00 34.04 3.58
378 387 2.124736 GGCAATGCACGAGGGCTA 60.125 61.111 7.79 0.00 34.04 3.93
392 435 3.711190 TCATAGAAGCTGACTAATGGGCA 59.289 43.478 5.25 0.00 0.00 5.36
393 436 4.061596 GTCATAGAAGCTGACTAATGGGC 58.938 47.826 5.25 0.00 39.90 5.36
394 437 5.053145 GTGTCATAGAAGCTGACTAATGGG 58.947 45.833 4.86 0.00 42.78 4.00
395 438 5.053145 GGTGTCATAGAAGCTGACTAATGG 58.947 45.833 4.86 0.26 42.78 3.16
396 439 5.521735 GTGGTGTCATAGAAGCTGACTAATG 59.478 44.000 4.86 5.12 42.78 1.90
397 440 5.423610 AGTGGTGTCATAGAAGCTGACTAAT 59.576 40.000 4.86 0.00 42.78 1.73
398 441 4.772624 AGTGGTGTCATAGAAGCTGACTAA 59.227 41.667 4.86 0.00 42.78 2.24
399 442 4.344978 AGTGGTGTCATAGAAGCTGACTA 58.655 43.478 4.86 4.36 42.78 2.59
400 443 3.169099 AGTGGTGTCATAGAAGCTGACT 58.831 45.455 4.86 2.31 42.78 3.41
401 444 3.601443 AGTGGTGTCATAGAAGCTGAC 57.399 47.619 0.00 0.00 42.68 3.51
402 445 5.939764 ATAAGTGGTGTCATAGAAGCTGA 57.060 39.130 0.00 0.00 0.00 4.26
403 446 7.766278 ACTTTATAAGTGGTGTCATAGAAGCTG 59.234 37.037 0.00 0.00 41.01 4.24
404 447 7.852263 ACTTTATAAGTGGTGTCATAGAAGCT 58.148 34.615 0.00 0.00 41.01 3.74
405 448 7.764443 TGACTTTATAAGTGGTGTCATAGAAGC 59.236 37.037 0.00 0.00 43.03 3.86
406 449 9.823647 ATGACTTTATAAGTGGTGTCATAGAAG 57.176 33.333 0.00 0.00 43.03 2.85
407 450 9.599866 CATGACTTTATAAGTGGTGTCATAGAA 57.400 33.333 0.00 0.00 43.03 2.10
408 451 8.758829 ACATGACTTTATAAGTGGTGTCATAGA 58.241 33.333 0.00 0.00 43.03 1.98
409 452 8.820933 CACATGACTTTATAAGTGGTGTCATAG 58.179 37.037 0.00 0.00 43.03 2.23
410 453 7.279981 GCACATGACTTTATAAGTGGTGTCATA 59.720 37.037 0.00 0.00 43.03 2.15
411 454 6.094048 GCACATGACTTTATAAGTGGTGTCAT 59.906 38.462 0.00 0.00 43.03 3.06
412 455 5.411361 GCACATGACTTTATAAGTGGTGTCA 59.589 40.000 0.00 0.00 43.03 3.58
413 456 5.411361 TGCACATGACTTTATAAGTGGTGTC 59.589 40.000 0.00 0.00 43.03 3.67
414 457 5.312895 TGCACATGACTTTATAAGTGGTGT 58.687 37.500 0.00 0.00 43.03 4.16
415 458 5.674569 GCTGCACATGACTTTATAAGTGGTG 60.675 44.000 0.00 4.54 43.03 4.17
416 459 4.396166 GCTGCACATGACTTTATAAGTGGT 59.604 41.667 0.00 0.00 43.03 4.16
417 460 4.395854 TGCTGCACATGACTTTATAAGTGG 59.604 41.667 0.00 0.00 43.03 4.00
418 461 5.122869 ACTGCTGCACATGACTTTATAAGTG 59.877 40.000 0.00 0.00 43.03 3.16
419 462 5.122869 CACTGCTGCACATGACTTTATAAGT 59.877 40.000 0.00 0.00 46.38 2.24
420 463 5.122869 ACACTGCTGCACATGACTTTATAAG 59.877 40.000 14.32 0.00 0.00 1.73
421 464 5.003160 ACACTGCTGCACATGACTTTATAA 58.997 37.500 14.32 0.00 0.00 0.98
422 465 4.578871 ACACTGCTGCACATGACTTTATA 58.421 39.130 14.32 0.00 0.00 0.98
423 466 3.415212 ACACTGCTGCACATGACTTTAT 58.585 40.909 14.32 0.00 0.00 1.40
424 467 2.849942 ACACTGCTGCACATGACTTTA 58.150 42.857 14.32 0.00 0.00 1.85
425 468 1.683943 ACACTGCTGCACATGACTTT 58.316 45.000 14.32 0.00 0.00 2.66
426 469 1.605710 GAACACTGCTGCACATGACTT 59.394 47.619 14.32 1.61 0.00 3.01
427 470 1.233019 GAACACTGCTGCACATGACT 58.767 50.000 14.32 3.18 0.00 3.41
428 471 0.239347 GGAACACTGCTGCACATGAC 59.761 55.000 14.32 8.52 0.00 3.06
429 472 0.179023 TGGAACACTGCTGCACATGA 60.179 50.000 14.32 0.00 0.00 3.07
430 473 2.333291 TGGAACACTGCTGCACATG 58.667 52.632 0.00 2.67 0.00 3.21
431 474 4.905240 TGGAACACTGCTGCACAT 57.095 50.000 0.00 0.00 0.00 3.21
442 485 4.895889 AGATGTAGCATAGCTAGTGGAACA 59.104 41.667 0.00 0.60 42.11 3.18
443 486 5.461032 AGATGTAGCATAGCTAGTGGAAC 57.539 43.478 0.00 0.00 42.11 3.62
444 487 6.307776 AGTAGATGTAGCATAGCTAGTGGAA 58.692 40.000 0.00 0.00 42.11 3.53
445 488 5.882040 AGTAGATGTAGCATAGCTAGTGGA 58.118 41.667 0.00 0.00 42.11 4.02
446 489 7.689446 TTAGTAGATGTAGCATAGCTAGTGG 57.311 40.000 0.00 0.00 42.11 4.00
451 494 9.535170 TCCTTAATTAGTAGATGTAGCATAGCT 57.465 33.333 0.00 0.00 43.41 3.32
452 495 9.575783 GTCCTTAATTAGTAGATGTAGCATAGC 57.424 37.037 0.00 0.00 0.00 2.97
455 498 9.935241 CATGTCCTTAATTAGTAGATGTAGCAT 57.065 33.333 0.00 0.00 0.00 3.79
456 499 7.872993 GCATGTCCTTAATTAGTAGATGTAGCA 59.127 37.037 0.00 0.00 0.00 3.49
457 500 7.332182 GGCATGTCCTTAATTAGTAGATGTAGC 59.668 40.741 0.00 0.00 0.00 3.58
458 501 7.819900 GGGCATGTCCTTAATTAGTAGATGTAG 59.180 40.741 9.76 0.00 34.39 2.74
459 502 7.291416 TGGGCATGTCCTTAATTAGTAGATGTA 59.709 37.037 19.09 0.00 34.39 2.29
460 503 6.101150 TGGGCATGTCCTTAATTAGTAGATGT 59.899 38.462 19.09 0.00 34.39 3.06
461 504 6.533730 TGGGCATGTCCTTAATTAGTAGATG 58.466 40.000 19.09 0.00 34.39 2.90
462 505 6.763715 TGGGCATGTCCTTAATTAGTAGAT 57.236 37.500 19.09 0.00 34.39 1.98
463 506 6.763715 ATGGGCATGTCCTTAATTAGTAGA 57.236 37.500 19.09 0.00 34.39 2.59
464 507 8.157476 ACTAATGGGCATGTCCTTAATTAGTAG 58.843 37.037 26.99 17.38 40.26 2.57
465 508 8.041143 ACTAATGGGCATGTCCTTAATTAGTA 57.959 34.615 26.99 8.43 40.26 1.82
466 509 6.911308 ACTAATGGGCATGTCCTTAATTAGT 58.089 36.000 24.51 24.51 38.97 2.24
467 510 6.998074 TGACTAATGGGCATGTCCTTAATTAG 59.002 38.462 23.56 23.56 37.94 1.73
468 511 6.905736 TGACTAATGGGCATGTCCTTAATTA 58.094 36.000 19.09 12.10 34.39 1.40
469 512 5.765510 TGACTAATGGGCATGTCCTTAATT 58.234 37.500 19.09 11.56 34.39 1.40
470 513 5.380043 CTGACTAATGGGCATGTCCTTAAT 58.620 41.667 19.09 3.62 34.39 1.40
471 514 4.780815 CTGACTAATGGGCATGTCCTTAA 58.219 43.478 19.09 0.00 34.39 1.85
472 515 3.433598 GCTGACTAATGGGCATGTCCTTA 60.434 47.826 19.09 12.18 34.39 2.69
473 516 2.684927 GCTGACTAATGGGCATGTCCTT 60.685 50.000 19.09 8.68 34.39 3.36
474 517 1.133976 GCTGACTAATGGGCATGTCCT 60.134 52.381 19.09 0.00 34.39 3.85
475 518 1.133976 AGCTGACTAATGGGCATGTCC 60.134 52.381 10.20 10.20 29.39 4.02
476 519 2.338577 AGCTGACTAATGGGCATGTC 57.661 50.000 0.00 0.00 29.39 3.06
477 520 2.240667 AGAAGCTGACTAATGGGCATGT 59.759 45.455 0.00 0.00 29.39 3.21
478 521 2.928334 AGAAGCTGACTAATGGGCATG 58.072 47.619 0.00 0.00 29.39 4.06
479 522 4.349048 TCATAGAAGCTGACTAATGGGCAT 59.651 41.667 5.25 0.00 29.39 4.40
489 532 3.601443 AGTGGTGTCATAGAAGCTGAC 57.399 47.619 0.00 0.00 42.68 3.51
492 535 7.852263 ACTTTATAAGTGGTGTCATAGAAGCT 58.148 34.615 0.00 0.00 41.01 3.74
559 602 9.214957 CACACTAACAATCTAACATGTCCTTAA 57.785 33.333 0.00 0.00 0.00 1.85
560 603 8.372459 ACACACTAACAATCTAACATGTCCTTA 58.628 33.333 0.00 0.00 0.00 2.69
562 605 6.769512 ACACACTAACAATCTAACATGTCCT 58.230 36.000 0.00 0.00 0.00 3.85
574 617 8.106247 ACGGATTGAATTTACACACTAACAAT 57.894 30.769 0.00 0.00 0.00 2.71
575 618 7.499321 ACGGATTGAATTTACACACTAACAA 57.501 32.000 0.00 0.00 0.00 2.83
615 658 0.179032 ATCCCGTTGTGCAAGTGTGA 60.179 50.000 0.00 0.00 0.00 3.58
637 694 1.516892 CTCTGCCTGACTGCCTCTC 59.483 63.158 0.00 0.00 0.00 3.20
652 709 6.126565 GGTTTTCCATGGTTAGGTATACCTCT 60.127 42.308 27.89 8.34 42.17 3.69
653 710 6.060136 GGTTTTCCATGGTTAGGTATACCTC 58.940 44.000 27.89 14.43 42.17 3.85
654 711 5.103813 GGGTTTTCCATGGTTAGGTATACCT 60.104 44.000 27.24 27.24 45.38 3.08
663 720 1.272037 GGACCGGGTTTTCCATGGTTA 60.272 52.381 12.58 0.00 45.91 2.85
664 721 0.541063 GGACCGGGTTTTCCATGGTT 60.541 55.000 12.58 0.00 45.91 3.67
671 728 1.366854 GCTGATCGGACCGGGTTTTC 61.367 60.000 15.25 4.59 0.00 2.29
672 729 1.376812 GCTGATCGGACCGGGTTTT 60.377 57.895 15.25 0.00 0.00 2.43
676 733 4.227134 CAGGCTGATCGGACCGGG 62.227 72.222 15.25 3.51 0.00 5.73
730 802 2.158534 TCAAGCTCAAAACTTAGGCCCA 60.159 45.455 0.00 0.00 0.00 5.36
748 820 4.373116 GCCTGACTCGGCCGTCAA 62.373 66.667 27.15 4.62 44.41 3.18
756 828 3.905678 CTAGCCCGGCCTGACTCG 61.906 72.222 5.55 0.00 0.00 4.18
757 829 3.541713 CCTAGCCCGGCCTGACTC 61.542 72.222 5.55 0.00 0.00 3.36
765 837 2.337879 TATGCAAAGCCCTAGCCCGG 62.338 60.000 0.00 0.00 41.25 5.73
766 838 0.250901 ATATGCAAAGCCCTAGCCCG 60.251 55.000 0.00 0.00 41.25 6.13
767 839 1.615392 CAATATGCAAAGCCCTAGCCC 59.385 52.381 0.00 0.00 41.25 5.19
768 840 1.615392 CCAATATGCAAAGCCCTAGCC 59.385 52.381 0.00 0.00 41.25 3.93
769 841 1.000171 GCCAATATGCAAAGCCCTAGC 60.000 52.381 0.00 0.00 40.32 3.42
770 842 1.267806 CGCCAATATGCAAAGCCCTAG 59.732 52.381 0.00 0.00 0.00 3.02
771 843 1.317613 CGCCAATATGCAAAGCCCTA 58.682 50.000 0.00 0.00 0.00 3.53
772 844 0.684153 ACGCCAATATGCAAAGCCCT 60.684 50.000 0.00 0.00 0.00 5.19
773 845 0.175531 AACGCCAATATGCAAAGCCC 59.824 50.000 0.00 0.00 0.00 5.19
774 846 2.008752 AAACGCCAATATGCAAAGCC 57.991 45.000 0.00 0.00 0.00 4.35
775 847 4.490160 CGTTAAAACGCCAATATGCAAAGC 60.490 41.667 1.88 0.00 46.06 3.51
776 848 5.112307 CGTTAAAACGCCAATATGCAAAG 57.888 39.130 1.88 0.00 46.06 2.77
791 863 1.530323 GCCTGGCCTCTTCGTTAAAA 58.470 50.000 7.66 0.00 0.00 1.52
815 887 3.917760 CCCATCGAGACTCGGGCC 61.918 72.222 23.92 0.00 40.88 5.80
818 890 0.108138 AAAAGCCCATCGAGACTCGG 60.108 55.000 23.92 9.40 40.88 4.63
822 894 0.169009 GTGCAAAAGCCCATCGAGAC 59.831 55.000 0.00 0.00 0.00 3.36
823 895 0.036732 AGTGCAAAAGCCCATCGAGA 59.963 50.000 0.00 0.00 0.00 4.04
824 896 0.169672 CAGTGCAAAAGCCCATCGAG 59.830 55.000 0.00 0.00 0.00 4.04
825 897 0.250684 TCAGTGCAAAAGCCCATCGA 60.251 50.000 0.00 0.00 0.00 3.59
826 898 0.813184 ATCAGTGCAAAAGCCCATCG 59.187 50.000 0.00 0.00 0.00 3.84
827 899 1.134907 CCATCAGTGCAAAAGCCCATC 60.135 52.381 0.00 0.00 0.00 3.51
828 900 0.899720 CCATCAGTGCAAAAGCCCAT 59.100 50.000 0.00 0.00 0.00 4.00
829 901 1.186917 CCCATCAGTGCAAAAGCCCA 61.187 55.000 0.00 0.00 0.00 5.36
830 902 1.593265 CCCATCAGTGCAAAAGCCC 59.407 57.895 0.00 0.00 0.00 5.19
852 924 3.368427 GGCTTAAATTTCAGGACCAAGCC 60.368 47.826 18.16 18.16 46.79 4.35
859 931 9.747898 TTTATAGTTCAGGCTTAAATTTCAGGA 57.252 29.630 0.00 0.00 0.00 3.86
863 935 9.582431 GGGTTTTATAGTTCAGGCTTAAATTTC 57.418 33.333 0.00 0.00 0.00 2.17
868 940 6.786122 AGTGGGTTTTATAGTTCAGGCTTAA 58.214 36.000 0.00 0.00 0.00 1.85
871 943 4.623171 CGAGTGGGTTTTATAGTTCAGGCT 60.623 45.833 0.00 0.00 0.00 4.58
874 946 4.092968 GTGCGAGTGGGTTTTATAGTTCAG 59.907 45.833 0.00 0.00 0.00 3.02
878 950 2.355412 GGGTGCGAGTGGGTTTTATAGT 60.355 50.000 0.00 0.00 0.00 2.12
879 951 2.285977 GGGTGCGAGTGGGTTTTATAG 58.714 52.381 0.00 0.00 0.00 1.31
968 1156 6.127310 GGTAGAAATAGAAGAGGCTGACTGAA 60.127 42.308 0.00 0.00 0.00 3.02
972 1160 4.202274 GGGGTAGAAATAGAAGAGGCTGAC 60.202 50.000 0.00 0.00 0.00 3.51
975 1163 4.008916 TGGGGTAGAAATAGAAGAGGCT 57.991 45.455 0.00 0.00 0.00 4.58
982 1170 4.726825 AGCCATTCTTGGGGTAGAAATAGA 59.273 41.667 0.00 0.00 43.84 1.98
985 1173 3.635591 CAGCCATTCTTGGGGTAGAAAT 58.364 45.455 0.00 0.00 43.84 2.17
991 1179 2.037847 GGCAGCCATTCTTGGGGT 59.962 61.111 6.55 0.00 43.84 4.95
1276 1467 3.936453 CGCCACTGCTACCAACTATAAAA 59.064 43.478 0.00 0.00 34.43 1.52
1283 1474 1.741770 CTCCGCCACTGCTACCAAC 60.742 63.158 0.00 0.00 34.43 3.77
1284 1475 2.662596 CTCCGCCACTGCTACCAA 59.337 61.111 0.00 0.00 34.43 3.67
1285 1476 4.082523 GCTCCGCCACTGCTACCA 62.083 66.667 0.00 0.00 34.43 3.25
1286 1477 3.391665 ATGCTCCGCCACTGCTACC 62.392 63.158 0.00 0.00 34.43 3.18
1287 1478 2.176273 CATGCTCCGCCACTGCTAC 61.176 63.158 0.00 0.00 34.43 3.58
1288 1479 1.898330 TTCATGCTCCGCCACTGCTA 61.898 55.000 0.00 0.00 34.43 3.49
1289 1480 2.547640 ATTCATGCTCCGCCACTGCT 62.548 55.000 0.00 0.00 34.43 4.24
1290 1481 2.056481 GATTCATGCTCCGCCACTGC 62.056 60.000 0.00 0.00 0.00 4.40
1291 1482 0.745486 TGATTCATGCTCCGCCACTG 60.745 55.000 0.00 0.00 0.00 3.66
1292 1483 0.463295 CTGATTCATGCTCCGCCACT 60.463 55.000 0.00 0.00 0.00 4.00
1293 1484 0.462581 TCTGATTCATGCTCCGCCAC 60.463 55.000 0.00 0.00 0.00 5.01
1294 1485 0.471191 ATCTGATTCATGCTCCGCCA 59.529 50.000 0.00 0.00 0.00 5.69
1295 1486 2.462456 TATCTGATTCATGCTCCGCC 57.538 50.000 0.00 0.00 0.00 6.13
1296 1487 5.414360 TCTAATATCTGATTCATGCTCCGC 58.586 41.667 0.00 0.00 0.00 5.54
1297 1488 6.041511 CCTCTAATATCTGATTCATGCTCCG 58.958 44.000 0.00 0.00 0.00 4.63
1298 1489 6.347696 CCCTCTAATATCTGATTCATGCTCC 58.652 44.000 0.00 0.00 0.00 4.70
1299 1490 6.347696 CCCCTCTAATATCTGATTCATGCTC 58.652 44.000 0.00 0.00 0.00 4.26
1300 1491 5.191323 CCCCCTCTAATATCTGATTCATGCT 59.809 44.000 0.00 0.00 0.00 3.79
1301 1492 5.435291 CCCCCTCTAATATCTGATTCATGC 58.565 45.833 0.00 0.00 0.00 4.06
1302 1493 5.435291 GCCCCCTCTAATATCTGATTCATG 58.565 45.833 0.00 0.00 0.00 3.07
1303 1494 4.476479 GGCCCCCTCTAATATCTGATTCAT 59.524 45.833 0.00 0.00 0.00 2.57
1304 1495 3.846588 GGCCCCCTCTAATATCTGATTCA 59.153 47.826 0.00 0.00 0.00 2.57
1305 1496 3.846588 TGGCCCCCTCTAATATCTGATTC 59.153 47.826 0.00 0.00 0.00 2.52
1306 1497 3.886938 TGGCCCCCTCTAATATCTGATT 58.113 45.455 0.00 0.00 0.00 2.57
1307 1498 3.585077 TGGCCCCCTCTAATATCTGAT 57.415 47.619 0.00 0.00 0.00 2.90
1308 1499 2.979678 GTTGGCCCCCTCTAATATCTGA 59.020 50.000 0.00 0.00 0.00 3.27
1309 1500 2.982488 AGTTGGCCCCCTCTAATATCTG 59.018 50.000 0.00 0.00 0.00 2.90
1310 1501 2.982488 CAGTTGGCCCCCTCTAATATCT 59.018 50.000 0.00 0.00 0.00 1.98
1311 1502 2.979678 TCAGTTGGCCCCCTCTAATATC 59.020 50.000 0.00 0.00 0.00 1.63
1312 1503 2.982488 CTCAGTTGGCCCCCTCTAATAT 59.018 50.000 0.00 0.00 0.00 1.28
1313 1504 2.293586 ACTCAGTTGGCCCCCTCTAATA 60.294 50.000 0.00 0.00 0.00 0.98
1314 1505 1.216990 CTCAGTTGGCCCCCTCTAAT 58.783 55.000 0.00 0.00 0.00 1.73
1315 1506 0.178873 ACTCAGTTGGCCCCCTCTAA 60.179 55.000 0.00 0.00 0.00 2.10
1316 1507 0.909610 CACTCAGTTGGCCCCCTCTA 60.910 60.000 0.00 0.00 0.00 2.43
1317 1508 2.208349 ACTCAGTTGGCCCCCTCT 59.792 61.111 0.00 0.00 0.00 3.69
1318 1509 1.198759 TACACTCAGTTGGCCCCCTC 61.199 60.000 0.00 0.00 0.00 4.30
1319 1510 0.550147 ATACACTCAGTTGGCCCCCT 60.550 55.000 0.00 0.00 0.00 4.79
1320 1511 1.209621 TATACACTCAGTTGGCCCCC 58.790 55.000 0.00 0.00 0.00 5.40
1321 1512 2.438021 TCATATACACTCAGTTGGCCCC 59.562 50.000 0.00 0.00 0.00 5.80
1322 1513 3.118408 TGTCATATACACTCAGTTGGCCC 60.118 47.826 0.00 0.00 31.43 5.80
1323 1514 4.137116 TGTCATATACACTCAGTTGGCC 57.863 45.455 0.00 0.00 31.43 5.36
1324 1515 6.749139 TCTATGTCATATACACTCAGTTGGC 58.251 40.000 0.00 0.00 42.09 4.52
1325 1516 9.599866 TTTTCTATGTCATATACACTCAGTTGG 57.400 33.333 0.00 0.00 42.09 3.77
1327 1518 9.823647 CCTTTTCTATGTCATATACACTCAGTT 57.176 33.333 0.00 0.00 42.09 3.16
1328 1519 7.928706 GCCTTTTCTATGTCATATACACTCAGT 59.071 37.037 0.00 0.00 42.09 3.41
1329 1520 8.147058 AGCCTTTTCTATGTCATATACACTCAG 58.853 37.037 0.00 0.00 42.09 3.35
1330 1521 8.023021 AGCCTTTTCTATGTCATATACACTCA 57.977 34.615 0.00 0.00 42.09 3.41
1331 1522 9.632807 CTAGCCTTTTCTATGTCATATACACTC 57.367 37.037 0.00 0.00 42.09 3.51
1332 1523 8.589338 CCTAGCCTTTTCTATGTCATATACACT 58.411 37.037 0.00 0.00 42.09 3.55
1333 1524 7.819900 CCCTAGCCTTTTCTATGTCATATACAC 59.180 40.741 0.00 0.00 42.09 2.90
1334 1525 7.512746 ACCCTAGCCTTTTCTATGTCATATACA 59.487 37.037 0.00 0.00 43.86 2.29
1335 1526 7.819900 CACCCTAGCCTTTTCTATGTCATATAC 59.180 40.741 0.00 0.00 0.00 1.47
1336 1527 7.733047 TCACCCTAGCCTTTTCTATGTCATATA 59.267 37.037 0.00 0.00 0.00 0.86
1337 1528 6.558775 TCACCCTAGCCTTTTCTATGTCATAT 59.441 38.462 0.00 0.00 0.00 1.78
1338 1529 5.903010 TCACCCTAGCCTTTTCTATGTCATA 59.097 40.000 0.00 0.00 0.00 2.15
1339 1530 4.721776 TCACCCTAGCCTTTTCTATGTCAT 59.278 41.667 0.00 0.00 0.00 3.06
1340 1531 4.101114 TCACCCTAGCCTTTTCTATGTCA 58.899 43.478 0.00 0.00 0.00 3.58
1341 1532 4.755266 TCACCCTAGCCTTTTCTATGTC 57.245 45.455 0.00 0.00 0.00 3.06
1342 1533 4.721776 TGATCACCCTAGCCTTTTCTATGT 59.278 41.667 0.00 0.00 0.00 2.29
1343 1534 5.296151 TGATCACCCTAGCCTTTTCTATG 57.704 43.478 0.00 0.00 0.00 2.23
1344 1535 5.975988 TTGATCACCCTAGCCTTTTCTAT 57.024 39.130 0.00 0.00 0.00 1.98
1345 1536 5.487488 TCTTTGATCACCCTAGCCTTTTCTA 59.513 40.000 0.00 0.00 0.00 2.10
1346 1537 4.289672 TCTTTGATCACCCTAGCCTTTTCT 59.710 41.667 0.00 0.00 0.00 2.52
1347 1538 4.396478 GTCTTTGATCACCCTAGCCTTTTC 59.604 45.833 0.00 0.00 0.00 2.29
1348 1539 4.336280 GTCTTTGATCACCCTAGCCTTTT 58.664 43.478 0.00 0.00 0.00 2.27
1349 1540 3.619979 CGTCTTTGATCACCCTAGCCTTT 60.620 47.826 0.00 0.00 0.00 3.11
1350 1541 2.093447 CGTCTTTGATCACCCTAGCCTT 60.093 50.000 0.00 0.00 0.00 4.35
1351 1542 1.482593 CGTCTTTGATCACCCTAGCCT 59.517 52.381 0.00 0.00 0.00 4.58
1352 1543 1.941325 CGTCTTTGATCACCCTAGCC 58.059 55.000 0.00 0.00 0.00 3.93
1353 1544 1.291132 GCGTCTTTGATCACCCTAGC 58.709 55.000 0.00 0.00 0.00 3.42
1354 1545 1.207089 TGGCGTCTTTGATCACCCTAG 59.793 52.381 0.00 0.00 0.00 3.02
1355 1546 1.207089 CTGGCGTCTTTGATCACCCTA 59.793 52.381 0.00 0.00 0.00 3.53
1356 1547 0.036010 CTGGCGTCTTTGATCACCCT 60.036 55.000 0.00 0.00 0.00 4.34
1357 1548 0.036388 TCTGGCGTCTTTGATCACCC 60.036 55.000 0.00 0.00 0.00 4.61
1358 1549 1.338200 ACTCTGGCGTCTTTGATCACC 60.338 52.381 0.00 0.00 0.00 4.02
1359 1550 2.086054 ACTCTGGCGTCTTTGATCAC 57.914 50.000 0.00 0.00 0.00 3.06
1360 1551 4.471904 AATACTCTGGCGTCTTTGATCA 57.528 40.909 0.00 0.00 0.00 2.92
1361 1552 5.593010 ACTAATACTCTGGCGTCTTTGATC 58.407 41.667 0.00 0.00 0.00 2.92
1362 1553 5.599999 ACTAATACTCTGGCGTCTTTGAT 57.400 39.130 0.00 0.00 0.00 2.57
1363 1554 5.884232 TCTACTAATACTCTGGCGTCTTTGA 59.116 40.000 0.00 0.00 0.00 2.69
1364 1555 6.132791 TCTACTAATACTCTGGCGTCTTTG 57.867 41.667 0.00 0.00 0.00 2.77
1365 1556 5.221087 GCTCTACTAATACTCTGGCGTCTTT 60.221 44.000 0.00 0.00 0.00 2.52
1366 1557 4.276431 GCTCTACTAATACTCTGGCGTCTT 59.724 45.833 0.00 0.00 0.00 3.01
1367 1558 3.816523 GCTCTACTAATACTCTGGCGTCT 59.183 47.826 0.00 0.00 0.00 4.18
1368 1559 3.564644 TGCTCTACTAATACTCTGGCGTC 59.435 47.826 0.00 0.00 0.00 5.19
1369 1560 3.552875 TGCTCTACTAATACTCTGGCGT 58.447 45.455 0.00 0.00 0.00 5.68
1370 1561 4.569761 TTGCTCTACTAATACTCTGGCG 57.430 45.455 0.00 0.00 0.00 5.69
1371 1562 6.588373 GCTAATTGCTCTACTAATACTCTGGC 59.412 42.308 0.00 0.00 38.95 4.85
1372 1563 7.661968 TGCTAATTGCTCTACTAATACTCTGG 58.338 38.462 0.00 0.00 43.37 3.86
1373 1564 8.572185 TCTGCTAATTGCTCTACTAATACTCTG 58.428 37.037 0.00 0.00 43.37 3.35
1374 1565 8.698973 TCTGCTAATTGCTCTACTAATACTCT 57.301 34.615 0.00 0.00 43.37 3.24
1392 1583 9.845740 TGCCAAATACTCTTATTTATCTGCTAA 57.154 29.630 0.00 0.00 36.00 3.09
1393 1584 9.845740 TTGCCAAATACTCTTATTTATCTGCTA 57.154 29.630 0.00 0.00 36.00 3.49
1394 1585 8.752005 TTGCCAAATACTCTTATTTATCTGCT 57.248 30.769 0.00 0.00 36.00 4.24
1395 1586 9.971922 ATTTGCCAAATACTCTTATTTATCTGC 57.028 29.630 0.00 0.00 36.00 4.26
1401 1592 9.259832 AGGAAGATTTGCCAAATACTCTTATTT 57.740 29.630 1.95 0.00 38.26 1.40
1402 1593 8.829373 AGGAAGATTTGCCAAATACTCTTATT 57.171 30.769 1.95 0.00 0.00 1.40
1403 1594 8.277918 AGAGGAAGATTTGCCAAATACTCTTAT 58.722 33.333 14.94 5.30 30.48 1.73
1404 1595 7.633789 AGAGGAAGATTTGCCAAATACTCTTA 58.366 34.615 14.94 0.00 30.48 2.10
1405 1596 6.488715 AGAGGAAGATTTGCCAAATACTCTT 58.511 36.000 14.94 10.61 30.48 2.85
1406 1597 6.072199 AGAGGAAGATTTGCCAAATACTCT 57.928 37.500 14.94 14.94 0.00 3.24
1407 1598 6.405176 CCAAGAGGAAGATTTGCCAAATACTC 60.405 42.308 1.95 8.63 36.89 2.59
1408 1599 5.420104 CCAAGAGGAAGATTTGCCAAATACT 59.580 40.000 1.95 0.00 36.89 2.12
1409 1600 5.418840 TCCAAGAGGAAGATTTGCCAAATAC 59.581 40.000 1.95 0.00 42.23 1.89
1410 1601 5.579047 TCCAAGAGGAAGATTTGCCAAATA 58.421 37.500 1.95 0.00 42.23 1.40
1411 1602 4.419282 TCCAAGAGGAAGATTTGCCAAAT 58.581 39.130 1.47 1.47 42.23 2.32
1412 1603 3.843422 TCCAAGAGGAAGATTTGCCAAA 58.157 40.909 0.00 0.00 42.23 3.28
1413 1604 3.524095 TCCAAGAGGAAGATTTGCCAA 57.476 42.857 0.00 0.00 42.23 4.52
1439 1630 4.777854 AATTCCGGGCCTTGGCCC 62.778 66.667 33.95 33.95 46.16 5.80
1440 1631 3.460868 CAATTCCGGGCCTTGGCC 61.461 66.667 21.74 21.74 45.38 5.36
1441 1632 2.679996 ACAATTCCGGGCCTTGGC 60.680 61.111 0.84 2.49 0.00 4.52
1442 1633 2.052104 GGACAATTCCGGGCCTTGG 61.052 63.158 0.84 5.29 29.98 3.61
1443 1634 2.052104 GGGACAATTCCGGGCCTTG 61.052 63.158 0.84 5.80 43.94 3.61
1444 1635 2.359011 GGGACAATTCCGGGCCTT 59.641 61.111 0.84 0.00 43.94 4.35
1445 1636 3.739613 GGGGACAATTCCGGGCCT 61.740 66.667 0.84 0.00 43.94 5.19
1446 1637 4.055227 TGGGGACAATTCCGGGCC 62.055 66.667 0.00 0.00 43.94 5.80
1475 1666 2.158813 ACACCAGAACTACCAACCAGTG 60.159 50.000 0.00 0.00 0.00 3.66
1476 1667 2.124411 ACACCAGAACTACCAACCAGT 58.876 47.619 0.00 0.00 0.00 4.00
1477 1668 2.158813 ACACACCAGAACTACCAACCAG 60.159 50.000 0.00 0.00 0.00 4.00
1478 1669 1.841277 ACACACCAGAACTACCAACCA 59.159 47.619 0.00 0.00 0.00 3.67
1479 1670 2.158871 TCACACACCAGAACTACCAACC 60.159 50.000 0.00 0.00 0.00 3.77
1501 1692 5.894298 TCATAGTACCCATTGCTTGATCT 57.106 39.130 0.00 0.00 0.00 2.75
1516 1707 9.905713 AAAAGACAAGGCTCATAAATCATAGTA 57.094 29.630 0.00 0.00 0.00 1.82
1573 1773 4.034858 CGAGCAAATGCATCATCTTACAGT 59.965 41.667 8.28 0.00 45.16 3.55
1599 1799 3.484557 GGCACGGTTACATTACATGAACG 60.485 47.826 0.00 0.00 0.00 3.95
1637 1837 4.600692 TCTCCATGAGACAACGAAAAGA 57.399 40.909 0.00 0.00 33.35 2.52
1772 1974 1.205417 GGTTGAAATCCGGGACTACGA 59.795 52.381 0.00 0.00 35.47 3.43
1811 2030 3.034635 TCTGGATTCTTCAGCCTAGACC 58.965 50.000 0.00 0.00 32.63 3.85
1812 2031 4.744795 TTCTGGATTCTTCAGCCTAGAC 57.255 45.455 0.00 0.00 32.63 2.59
1813 2032 5.965033 AATTCTGGATTCTTCAGCCTAGA 57.035 39.130 0.00 0.00 32.63 2.43
1814 2033 7.387397 GTCATAATTCTGGATTCTTCAGCCTAG 59.613 40.741 0.00 0.00 32.63 3.02
1815 2034 7.147497 TGTCATAATTCTGGATTCTTCAGCCTA 60.147 37.037 0.00 0.00 32.63 3.93
1816 2035 6.060788 GTCATAATTCTGGATTCTTCAGCCT 58.939 40.000 0.00 0.00 32.63 4.58
1817 2036 5.824624 TGTCATAATTCTGGATTCTTCAGCC 59.175 40.000 0.00 0.00 32.63 4.85
1818 2037 6.932356 TGTCATAATTCTGGATTCTTCAGC 57.068 37.500 0.00 0.00 32.63 4.26
1819 2038 8.672823 TCATGTCATAATTCTGGATTCTTCAG 57.327 34.615 0.00 0.00 0.00 3.02
1820 2039 8.896744 GTTCATGTCATAATTCTGGATTCTTCA 58.103 33.333 0.00 0.00 0.00 3.02
1821 2040 8.896744 TGTTCATGTCATAATTCTGGATTCTTC 58.103 33.333 0.00 0.00 0.00 2.87
1822 2041 8.812513 TGTTCATGTCATAATTCTGGATTCTT 57.187 30.769 0.00 0.00 0.00 2.52
1823 2042 8.812513 TTGTTCATGTCATAATTCTGGATTCT 57.187 30.769 0.00 0.00 0.00 2.40
1824 2043 9.512435 CTTTGTTCATGTCATAATTCTGGATTC 57.488 33.333 0.00 0.00 0.00 2.52
1825 2044 8.472413 CCTTTGTTCATGTCATAATTCTGGATT 58.528 33.333 0.00 0.00 0.00 3.01
1826 2045 7.616935 ACCTTTGTTCATGTCATAATTCTGGAT 59.383 33.333 0.00 0.00 0.00 3.41
1827 2046 6.947733 ACCTTTGTTCATGTCATAATTCTGGA 59.052 34.615 0.00 0.00 0.00 3.86
1828 2047 7.161773 ACCTTTGTTCATGTCATAATTCTGG 57.838 36.000 0.00 0.00 0.00 3.86
1829 2048 8.084073 ACAACCTTTGTTCATGTCATAATTCTG 58.916 33.333 0.00 0.00 42.22 3.02
1830 2049 8.181904 ACAACCTTTGTTCATGTCATAATTCT 57.818 30.769 0.00 0.00 42.22 2.40
1831 2050 8.299570 AGACAACCTTTGTTCATGTCATAATTC 58.700 33.333 6.94 0.00 45.52 2.17
1832 2051 8.084073 CAGACAACCTTTGTTCATGTCATAATT 58.916 33.333 6.94 0.00 45.52 1.40
1833 2052 7.448161 TCAGACAACCTTTGTTCATGTCATAAT 59.552 33.333 6.94 0.00 45.52 1.28
1834 2053 6.770303 TCAGACAACCTTTGTTCATGTCATAA 59.230 34.615 6.94 0.00 45.52 1.90
1835 2054 6.204688 GTCAGACAACCTTTGTTCATGTCATA 59.795 38.462 6.94 0.00 45.52 2.15
1836 2055 5.009010 GTCAGACAACCTTTGTTCATGTCAT 59.991 40.000 6.94 0.00 45.52 3.06
1837 2056 4.335315 GTCAGACAACCTTTGTTCATGTCA 59.665 41.667 6.94 0.00 45.52 3.58
1838 2057 4.552767 CGTCAGACAACCTTTGTTCATGTC 60.553 45.833 0.41 0.00 45.52 3.06
1839 2058 3.312421 CGTCAGACAACCTTTGTTCATGT 59.688 43.478 0.41 0.00 45.52 3.21
1840 2059 3.559655 TCGTCAGACAACCTTTGTTCATG 59.440 43.478 0.41 0.00 45.52 3.07
1841 2060 3.804036 TCGTCAGACAACCTTTGTTCAT 58.196 40.909 0.41 0.00 45.52 2.57
1842 2061 3.254470 TCGTCAGACAACCTTTGTTCA 57.746 42.857 0.41 0.00 45.52 3.18
1843 2062 4.331717 TCTTTCGTCAGACAACCTTTGTTC 59.668 41.667 0.41 0.00 45.52 3.18
1844 2063 4.258543 TCTTTCGTCAGACAACCTTTGTT 58.741 39.130 0.41 0.00 45.52 2.83
1846 2065 4.875544 TTCTTTCGTCAGACAACCTTTG 57.124 40.909 0.41 0.00 0.00 2.77
1847 2066 5.588648 TCATTTCTTTCGTCAGACAACCTTT 59.411 36.000 0.41 0.00 0.00 3.11
1887 2106 4.040952 TCTGCTTCTTCTTGTAGCCTTCTT 59.959 41.667 0.00 0.00 38.15 2.52
1899 2118 1.347050 TGCTCTGCTTCTGCTTCTTCT 59.653 47.619 0.00 0.00 40.48 2.85
1900 2119 1.805869 TGCTCTGCTTCTGCTTCTTC 58.194 50.000 0.00 0.00 40.48 2.87
1901 2120 2.027007 AGATGCTCTGCTTCTGCTTCTT 60.027 45.455 7.08 0.00 40.65 2.52
1902 2121 1.555992 AGATGCTCTGCTTCTGCTTCT 59.444 47.619 7.08 0.00 40.65 2.85
1903 2122 2.027003 AGATGCTCTGCTTCTGCTTC 57.973 50.000 7.08 0.00 40.65 3.86
1983 2202 2.774234 TCCTATTCTTCCAAGGCTCCAG 59.226 50.000 0.00 0.00 0.00 3.86
1989 2828 2.507471 AGTGGCTCCTATTCTTCCAAGG 59.493 50.000 0.00 0.00 0.00 3.61
1998 2837 1.132500 GGCTGGTAGTGGCTCCTATT 58.868 55.000 0.00 0.00 0.00 1.73
2011 2852 2.158871 TGACAACGAAAACTAGGCTGGT 60.159 45.455 0.00 0.00 0.00 4.00
2013 2854 3.521524 GTGACAACGAAAACTAGGCTG 57.478 47.619 0.00 0.00 0.00 4.85
2038 2879 5.178067 CCGTTCGGAACAAAACTTATAGTGT 59.822 40.000 19.91 0.00 0.00 3.55
2039 2880 5.614760 CCGTTCGGAACAAAACTTATAGTG 58.385 41.667 19.91 0.00 0.00 2.74
2041 2882 4.436451 GGCCGTTCGGAACAAAACTTATAG 60.436 45.833 19.91 0.66 0.00 1.31
2042 2883 3.436359 GGCCGTTCGGAACAAAACTTATA 59.564 43.478 19.91 0.00 0.00 0.98
2043 2884 2.227149 GGCCGTTCGGAACAAAACTTAT 59.773 45.455 19.91 0.00 0.00 1.73
2046 2887 0.748729 TGGCCGTTCGGAACAAAACT 60.749 50.000 19.91 0.00 0.00 2.66
2047 2888 0.312729 ATGGCCGTTCGGAACAAAAC 59.687 50.000 19.91 8.00 0.00 2.43
2048 2889 1.033574 AATGGCCGTTCGGAACAAAA 58.966 45.000 19.91 3.73 0.00 2.44
2050 2891 0.594110 GAAATGGCCGTTCGGAACAA 59.406 50.000 19.91 3.74 0.00 2.83
2051 2892 0.250553 AGAAATGGCCGTTCGGAACA 60.251 50.000 19.91 12.62 0.00 3.18
2095 2956 1.337167 CGTCTCTGAACCATCTGCACA 60.337 52.381 0.00 0.00 0.00 4.57
2096 2957 1.337260 ACGTCTCTGAACCATCTGCAC 60.337 52.381 0.00 0.00 0.00 4.57
2191 3052 3.204827 CCGCGCCCCAAAGAGATG 61.205 66.667 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.