>input_sequence_86793
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-------------------------------------------------------------------ATGGCTGCCATGG
TAGCTGCAGCGGAGGCCGCCGGTGTCACCGTGGTGGCGGGAGGCAGGAGCAA---GTGCTTCACGCGGAGCCTCTACTGG
CGGCTCCGTGCTGCCATCCGGCGGCTGCACTCGGAGCGTCGCAAGTGGAGCAGGCAGAGGTTGTGCTTCCACTACGACGC
CCTCAGCTACTCGCTCAACTTCGACGACGGCCGCCGCGGCTGA-------------------------------------
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>chr2B_1_TraesCS2B01G392000
GTGTTGCTGCCCAGACGTCTGATTCATGTTCATGGTGAAAAGGCAACACGAATACTTTAGAACCAGATAGGTGTATTAGT
TTTTTGATAAGTCA--TTTTTTTTACTTTGACGAAGTTCAGAGGAAAAAATATCGACATTCATAATACTAAATAAA-AAA
ATATGAAAATGTATTTCATGATAAATCTAATGATACCGATTTGATATTATGGATATTGATATATTTCTCTACAAATCTGG
TCAAACTTAAAAGTGCTTGACTATTCA-AAAAACTAATACACCATATATTTTGAAACGAAGGGATATT----TTTTTTAC
GAAAACACAACAACACCAACAGCACAGTAAAACGCGTCAAACCCTTCTAGTTAATGAACAATGTAGTAG-----------
-----------------------CCCTCGTGCATTGCCCATTAGTCAGCTTCTATGACACCACTTATAAAGTCATGTGCA
GCAGTGTTCCACTAGCTATGCTACATCTACTAATTAAGGACATGCCCATTAGTCAGCTTCTATGACACCACTTATAAAGT
CATGTGCAGCAGTGTTCCACTAGCTATGCTACATCTACTAATTAAGGACATGTTAGATTGTTAGTGTGTAAATTCAATCC
GTAGCATTTTTAGGGTTTCACACTT--------------GCACAACGGGATGCGAGAGGCAGTCAGGCAGAGGTATACCT
AACCATGGAAAACCCGGTCCGATCAGCCTGG---------------CCCGGCCCGGCTCAGTCTTGCCCATGGGCCGGGC
ATGGGCCTAAGTTTTGAGCTTGACGGCCGAGTCAGGCCGGGCTAGGGCTTTGCATATTGGCGTTTTAACGAAGAGGCCAG
GCCCAAGGCCCGAGTCTCGATGGGCTTTTGCACTGATGGGCCAGGCTTGGTCCTGAAATTTAAGCCTGAAC---------
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-----------TATAAAACCCACTCGCACCCCCTCTGCTGCCGCAAAGCCGCAA-GACGAGTTCAGGCTTCAGAGCTGAG
ACTT---------------GCCCAAACAGCGCAGCTTCAGTCAGCCTCTTCTATTTCTACCCCAAGAATGGCTGCCATGG
TAGCTGCAGCGGAGGCCGCCGGTGTCACCGTGGTGGCGGGAGGCAGGAGCAA---GTGCTTCACGCGGAGCCTCTACTGG
CGGCTCCGTGCTGCCATCCGGCGGCTGCACTCGGAGCGTCGCAAGTGGAGCAGGCAGAGGTTGTGCTTCCACTACGACGC
CCTCAGCTACTCGCTCAACTTCGACGACGGCCGCCGCGGCTGACTCCGCCGATTTCGTGTGGTGACGGGCCGGCCGGTTG
CATGATCTGTGGCGCCTCCGTGTCGGTTTTATAGTTGGTAGCAGTGGCGGAGCATGAATCAGATATTAGAGGGGGCCAAC
TGAGTGTATATGACATAGAAAAGGCTAGGGTGATCAAAGACGCCAGAGTATTAGTAGAGCAATTAGCAGATAAATAAGAG
TATTTGGCAAATCTTCCTCTTGGAAGGGGGGGCCAAGGCCCGGAATTGTCCCCATGACGCTCCGCCACTGGTTGGTAGTT
CTGGTGTGTGAAGATCAAGCAATGGGTACTATGAT-------TTATGAGCCTTGTCTTTTT-AACTCTT-CATCTTGTTT
CGGAAATGGATGACTGTAAGATGATGCATTTGCTCGGCCGTTCATGTAATGTAACCGTGCCGTGTCATATTCATGATCTT
TTCGTTGTCTCATGGAGAAGATGCTGGTGAAAATTCAGAGAACACGCTGACCTGC-GCACAGTGCTGTTCTGGCCGAAAA
CGTTA-CGTATTTACCTTCACGAAAGGAGCACGTAACAGGAACTGGCCCCGAATCGTAGTCCCGGATTTCAACCTT----
------------AATTATGACATGAA-CAGGTCTAGGCTGAAGAATCCAGAATTATGACATGAACAAAGGTTGTCTGACG
AAAGAAATGACATGAAGAGGCAGTAAAGAAGGCTACAAGAAGAAGCAGAAGCAGAGCATCTGTCAATGCGTTCAGAAGCG
CTATCATTAGCAGAGGATTTGTCTGAAGAAAACGATGGAACCT-------------------------------------
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-----------------------GGAGCCTTGGAAGA--ATAGGAGCCACTACCAGCCTAGTTTTCGTTGTCACGGGAAC
ACTATAAGTTTTGTT--------------------CCGAACGGCCATTTCTCTCTGCAAGGAAATGACAGTGCAGTGTGC
AGATGGTTCAGAGACGTGCAGTAACGTCGTCCATCCTTGGATGAGCTCGATCGTTCACATCGCGCTCAAAGGGTGGCGAC
AGGAGAATCATCATCTCTTTGGGGCGCGGGCAA
>chr2D_69
--------------------------------------------------------------------AGGTGTATTAGT
TTTTTGATTAGTCAAATTTCTTTTACTTTGACCAAGTTCCGAGCCAAAAATATCGAAATTCACAATACTAAATAAATAAA
ATATGAAAAATTATTTCGCGCTAAATCTAATGATACCGATTTGATATTATGGATATTGATATATTTCTCTATAAATTTTG
CCAAACTTAAAAATGTTTGACTATTCAGAAAAACTAATACACCATATATTTCGAAAACGAAGGAAGTTATTATTTTTAAT
GAAAACATCAAAGACG--------CAGCAAAGCACGTCCAACCCTTCTAGTTAATGCACAAATATAGTAGAAACTGCTTG
AATCAACGGATTAGTTGGCGAATCCCTCGTGCAT----------------------------------------------
------------------------------------------TGCCCATTACTCCGCTTCTATGACACCACTTATAAAGT
CATGCGCACCATTGTTCCACTAGCTATGCTACATCTACTAAGAACA------------TGTTAGTGTGTAAATTCAATCC
GTAGAATTTTTAGGGTTCCACACTT--------------GCACAATGGGATCCTAGAGGCAGTCAGGCC--GGTATACCA
GACCATGCGAAATCCGGCCCGGTCAGCCCAGCCCAAAATAGGCCAACCCGGCCCGGCCTGGTCTTGCGCATGGGCCACGC
ACGGGCCTAAGTTTTGAGCCCAAAGGC--------------------------------GCGATTTAAGGAAGAGGCCCG
GCCCAACGCTCGACA-------GGCTTTTGCACTGATGGGCCAAGCTTGGGCCTAAAATCTAGGCTTGATGGCCTGGCTT
TATAAGGCCCGGGCTGAAGCCCGGCCCGGCCCGACGTATGGCCAGGTATAAGAGGAAGGAAACAAGAGGAGAAAGG-CTG
CATGAGACG--TATAAAACCTACTCACACCCCC-CTGCTGCCGGAAAGCCGCAA-GACGAGTTCAGGCTTGAGAGCTGAG
ACTT---------------GCCCAAACAGCGAA----------------------------------------GCCATGG
TAGCTGCAGCGGAGGCCGCCGGTGTCACCGTGGTGGCGGGACGCAGGAGCAA---GTGCTTCACGCGGAGCCTCTACTGG
CGCCTCCGTGCTGCCCTCCGGCGGCTGCACTCGGAGCGCGGCAGGTGGCGCAGGCAGCAGTTGTGCTTCCACTACGACGC
CCTCAGCTACTCGCTCAACTTCGACGACGGCCACGGCGGCTGACTCCGCCGATTTCGTGCAGTGGC-GGCCGGCCGGTTG
CATCATCTGTCGCGCCTCCGTGTCTGCTTTAGA-----------------------------------------------
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----------------------------------------------------------------------GTTAGTTGTT
CTGGTGTGTGAGGATCAAGCAATGGGCACGATGATTAGCTTGTTATGAGCCTTGTCTTTTT-AACTCTTTCATTTTGTTT
CGGAAATCGATGGTTGTAAGATGATGCATTTGCTCGGCTGTTCATGTAATGTAACCGTGCCGTGTCATATTCATGACCTT
TTCGTTGACTCATGGAGAAGATGCTGGTGAAAATTCAGGGAACACGCTGACCTGCGGCACAGTGCTGTTCTGGCCGAAAA
CGTTAACGTGTTTACCTTCACGAAAGGAGCACGTAACAGGAACTGGCCCCGAAGCGTAGTCCCGGATTTCAACCTTAAGT
TGCAGAACCCAGAATTATGACATGAA-CA-------------------------------------AAGGTTGTCCGACG
AAAGAAATGACATGAAGAGGCAGTA-AGAAGGATACA------AGCAGAAGCAGAGCATCTGTCAATGCGTTCAGAAGCG
CTATCATTAGCAGAGGATTTGTCTGAAGAAAAGGATGCAACTTGGGAGTCTTGGAAGCATATAGGAGCCACTGCTGGTCT
AGTTCTCGTTGTCACGGGAGTATACTAGTATAAGTTTGTTCTTTCAGTAGACAGTGCCGAACGGCCATTTCTCTCTGCAA
GGAAATGAACATTGCAGATGGTTCAGAGGTGTGTGAGGATCAAGCAATGGGCACGATGATTAGCTTGTTATGAGCCTTGT
CTTTTTAACTCTTTCATTTTGTTTCGGAAATCAATGGTTGTAAGATGATGCATTTGCTCGGCTGTTCATGTAATGTAACC
GTGCCGTGTCATATTCATGACCTTTTCGTTGACTCATGGAGAAGATGCTGGTGAAAATTCAGGGAACACGCTGACCTGCG
GCACAGTGCTGTTCTGGCCGAAAACGTTAACGTGTTTACCTTCACGAAAGGAGCACGTAACAGGAACTGGCCCCGAAGCG
TAGTCCCGGATTTCAACCTTAAGTTGCAGAACCCAGAATTATGACATGAACAAAGGTTGTCCGACGAAAGAAATGACATG
AAGAGGCAGTAAGAAGGATACAAGCAGAAGCAGAGCATCTGTCAATGCGTTCAGAAGCGCTATCATTAGCAGAGGATTTG
TCTGAAGAAAAGGATGCAACTTGGGAGTCTTGGAAGCATATAGGAGCCACTGCTGGTCTAGTTCTCGTTGTCACGGGAGT
ATACTAGTATAAGTTTGTTCTTTCAGTAGACAGTGCCGAACGGCCATTTCTCTCTGCAAGGAAATGAACAT------TGC
AGATGGTTCAGAGGCGTGCAGGAACGTCACCCATCCTTGGATGAGCTCGATCGTTCACATCGCGGTCAAAGGGTGGCGAC
AGGAGAATCATGATCCCTTTGGGGCGCGGGCAA
>chr2A_481
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------------------------------------------TGCTCATTACTCCGCTTCTATGACACCACGTATAAAGT
CATGTGCACCCGTGTTCCACTAGCTATGCTCTACGGG--------GGACATGTCAGCCC--------GTAAATTCAATCC
GTAGCATTTTTAGGGTTCCACACTTCCACTTCCACAATCGCACAACGGGATGGC--------------------------
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--------------------------------------------------AGAGGAAGAAAACAAGAGGGAAAAGGGCTG
CACGAGACGCGTATATAGCCCACCAGTCGCACTTCCCTTGCTGCACAACCGCGAGGCCGAGTTCAGACTTCGGAGCTGAG
CTGAGACACAGAGCGCTCGGCCCAAACAGCGCAGCCTCAATCCGCCTCTCCT-TTTCTGCCCCAAGAATGGCTGCCGTGG
TAGCTGCAGCGGAGGCCGCCGGTGTCACCGTGGTGGCGGGAGGCAGGAGCAACAAGTGCTTCACGCGGAGCCTCTACTGG
CGGCTCCGTGCTGCCATCCGGCGGCTGCACTCGGAGCGTCGCAAGTGGAGCAGGCAGAGGTTCTGCTTCCACTACGACGC
CCTCAGCTACTCGCTCAACTTCGACGACGGCCGCGGCGGCTGACTCCGCTGATTTCGTGCAGTGAC-GGCCGGCCGGTTG
CATGATCTGTGGCGCCTCCGTGTTGGCTTTATA-----------------------------------------------
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----------------------------------------------------------------------GTTGGTAGTT
CTGGTGTGTGAGGATCAAGCAATGGGCACGATGATTAGCTTGTTATGAGCCTTGTCTTTTTTAACTCTT-CATCTTGCTT
CAGAAATGGATGGCTGTAAGATGGGC---------------------AATGTAACTGTGGTGTGCCATATTCATGACCTT
TTCGTTGTCTCATGGAGAAGATGCTGGTGTAAATTCAGAGAACATGCTGACCTGCGT-ACAGTGCTGTTTTGGCCGAAAA
CTTTA-TTTATCTGAACGATCACG---------------------------------------------------TAAGT
TGCAGAATCCAGAGTTATGACATGAAGCA-------------------------------------GGGATTGTCTGAAG
AGAAAAATGGCGTCAAGCGAGAATG-AGAAGGCTACA------GGCAGAAGCAGAGGATCTGTCAATGCGTTCAGAAGCG
CTATCATTAGCAGAGGATTTGTCTGAAGAAAACGATGGAACTTGGGAGTCTTGGAAGCATA--GGAGCCACTACTGGTCT
TAGTTCTCGGTACACGGGAGTAC-----TATAAGTTTGTTCTTTCAGTAGACA---------------------------
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-------------------------------AGTGCCCGACGGCCATTTCGCTCTGCAGGGAGATGACATTGCAGCTCAA
AAAT-GTGCAGAGGCGTGCAGCAAGGTCATCCCG------------TCGATCGTTCACATCGCACTCAAAGGGTGACGAC
AGGAGAATCATGATCTCCTTGGGGCGCGGGCAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
--------S----------S------------S------S---SS-----------S-----S-----------------
---------SS------SS-S--------------------------------------------------S----S-S-
S-----------S--S-----------------------------------S----SSS-S---SS-----------S-S
-------SS-S-SSSSSSSSSSSS---S---S-S----S-----------------S----SSSSSSSS-----------
----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S--S-------------------------
--------S--------------------------------SS-S--------S--SS----------------------
-----------------S-----------------------------------S--------------SSS--------S
S------SS---S----S---S------SS---------------------------SSS-------S--------SS--
-S-----------------SSS-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-----S---------S-
------S--S---SSSSSSSSS---------------------S------S---S----S--S--S---SS---------
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-----------------------------------S---S--S------S--S-----S---------------------
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----------------------------------S------------------------SS-----S-------------
--------------------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-----------S--------------S--S--------------------------------------------------
------------S-------------------------S-------------------------------------S---
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-----------------------------------------------------S--------------------------
-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
-------------------------S-----------SSSSSS-------------------------------------
-----------------------------------------S--------------------------------------
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---------------------------S--------S--------------S-SS-S------S--------------SS
-SSS--SSS-SS---------------------------------------------------------S-----SS---
-------------S-------S------S---------------------------------------------------
-----------S---------------------
>forward_492
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------------------------------------------------------------------------CATGTGCA
GCAGTGTTCCAC--------------------------------------------------------------------
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>reverse_1547
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--------------------------AGGGTGATCAAAGACGCCAG----------------------------------
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