Multiple sequence alignment - TraesCS2B01G386700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G386700 chr2B 100.000 3577 0 0 1 3577 549677063 549680639 0.000000e+00 6606.0
1 TraesCS2B01G386700 chr2D 94.519 1040 37 13 1734 2757 470642992 470644027 0.000000e+00 1587.0
2 TraesCS2B01G386700 chr2D 94.183 447 25 1 991 1437 470642018 470642463 0.000000e+00 680.0
3 TraesCS2B01G386700 chr2D 87.500 448 24 12 480 918 470641533 470641957 4.150000e-134 488.0
4 TraesCS2B01G386700 chr2D 91.643 347 21 5 1402 1742 470642472 470642816 1.160000e-129 473.0
5 TraesCS2B01G386700 chr2D 79.641 668 98 18 2759 3390 537450893 537450228 2.530000e-121 446.0
6 TraesCS2B01G386700 chr2D 89.474 342 27 4 60 399 470641173 470641507 1.190000e-114 424.0
7 TraesCS2B01G386700 chr2A 91.649 970 47 21 1734 2672 612409081 612410047 0.000000e+00 1312.0
8 TraesCS2B01G386700 chr2A 88.016 993 62 16 468 1437 612407688 612408646 0.000000e+00 1122.0
9 TraesCS2B01G386700 chr2A 91.450 269 19 3 1398 1666 612408653 612408917 2.030000e-97 366.0
10 TraesCS2B01G386700 chrUn 82.209 697 80 22 2766 3422 47379028 47379720 8.670000e-156 560.0
11 TraesCS2B01G386700 chrUn 74.534 322 73 7 3106 3421 249240936 249241254 8.060000e-27 132.0
12 TraesCS2B01G386700 chr5B 82.379 681 74 24 2785 3422 594474789 594475466 5.220000e-153 551.0
13 TraesCS2B01G386700 chr5B 86.478 318 39 1 3107 3420 598568154 598567837 2.640000e-91 346.0
14 TraesCS2B01G386700 chr5B 86.478 318 39 1 3107 3420 598589243 598588926 2.640000e-91 346.0
15 TraesCS2B01G386700 chr5B 86.164 318 40 1 3107 3420 598541775 598541458 1.230000e-89 340.0
16 TraesCS2B01G386700 chr5B 79.798 99 15 5 2903 2998 465614572 465614476 2.300000e-07 67.6
17 TraesCS2B01G386700 chr7B 89.905 317 28 1 3108 3420 612893854 612894170 4.300000e-109 405.0
18 TraesCS2B01G386700 chr7B 77.391 230 47 5 3194 3421 67943612 67943386 8.060000e-27 132.0
19 TraesCS2B01G386700 chr4D 76.744 688 109 26 2768 3420 4250341 4251012 1.590000e-88 337.0
20 TraesCS2B01G386700 chr4A 76.453 688 111 28 2766 3420 599642820 599642151 3.440000e-85 326.0
21 TraesCS2B01G386700 chr3D 84.564 298 37 9 2768 3062 614073694 614073403 1.630000e-73 287.0
22 TraesCS2B01G386700 chr3D 81.301 123 20 3 2928 3048 585876400 585876279 2.940000e-16 97.1
23 TraesCS2B01G386700 chr6D 89.655 145 13 2 1012 1155 309993416 309993273 2.190000e-42 183.0
24 TraesCS2B01G386700 chr6B 89.655 145 13 2 1012 1155 477798403 477798260 2.190000e-42 183.0
25 TraesCS2B01G386700 chr6A 86.905 168 17 5 1012 1178 446739683 446739520 2.190000e-42 183.0
26 TraesCS2B01G386700 chr4B 81.379 145 20 5 1012 1156 229349645 229349508 1.050000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G386700 chr2B 549677063 549680639 3576 False 6606.000000 6606 100.000000 1 3577 1 chr2B.!!$F1 3576
1 TraesCS2B01G386700 chr2D 470641173 470644027 2854 False 730.400000 1587 91.463800 60 2757 5 chr2D.!!$F1 2697
2 TraesCS2B01G386700 chr2D 537450228 537450893 665 True 446.000000 446 79.641000 2759 3390 1 chr2D.!!$R1 631
3 TraesCS2B01G386700 chr2A 612407688 612410047 2359 False 933.333333 1312 90.371667 468 2672 3 chr2A.!!$F1 2204
4 TraesCS2B01G386700 chrUn 47379028 47379720 692 False 560.000000 560 82.209000 2766 3422 1 chrUn.!!$F1 656
5 TraesCS2B01G386700 chr5B 594474789 594475466 677 False 551.000000 551 82.379000 2785 3422 1 chr5B.!!$F1 637
6 TraesCS2B01G386700 chr4D 4250341 4251012 671 False 337.000000 337 76.744000 2768 3420 1 chr4D.!!$F1 652
7 TraesCS2B01G386700 chr4A 599642151 599642820 669 True 326.000000 326 76.453000 2766 3420 1 chr4A.!!$R1 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.106708 TCATGACCGGCAGATAAGGC 59.893 55.0 0.0 0.0 0.00 4.35 F
38 39 0.107456 CATGACCGGCAGATAAGGCT 59.893 55.0 0.0 0.0 0.00 4.58 F
40 41 0.178068 TGACCGGCAGATAAGGCTTC 59.822 55.0 1.3 0.0 0.00 3.86 F
735 749 0.107456 ACAGCATCCGCCCTATTCAG 59.893 55.0 0.0 0.0 39.83 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1517 1614 0.942962 GCAGGGCAATCGAGATTCAG 59.057 55.000 0.0 0.0 0.00 3.02 R
2537 2854 0.038159 GAGCATATCCCTCCGGTTCG 60.038 60.000 0.0 0.0 0.00 3.95 R
2540 2857 4.217112 GGAGCATATCCCTCCGGT 57.783 61.111 0.0 0.0 43.01 5.28 R
2785 3111 0.111061 TTGCAGAGGTCAGGCATGTT 59.889 50.000 0.0 0.0 37.39 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.892160 ATTGGTTCAGACTTGACATCATG 57.108 39.130 0.00 0.00 31.71 3.07
23 24 4.622260 TGGTTCAGACTTGACATCATGA 57.378 40.909 0.00 0.00 31.71 3.07
24 25 4.318332 TGGTTCAGACTTGACATCATGAC 58.682 43.478 0.00 0.00 31.71 3.06
25 26 3.686726 GGTTCAGACTTGACATCATGACC 59.313 47.826 0.00 0.00 31.71 4.02
26 27 3.236632 TCAGACTTGACATCATGACCG 57.763 47.619 0.00 0.00 0.00 4.79
27 28 2.094026 TCAGACTTGACATCATGACCGG 60.094 50.000 0.00 0.00 0.00 5.28
28 29 1.009829 GACTTGACATCATGACCGGC 58.990 55.000 0.00 0.00 0.00 6.13
29 30 0.324614 ACTTGACATCATGACCGGCA 59.675 50.000 0.00 0.00 0.00 5.69
30 31 1.012086 CTTGACATCATGACCGGCAG 58.988 55.000 0.00 0.00 0.00 4.85
31 32 0.612744 TTGACATCATGACCGGCAGA 59.387 50.000 0.00 1.19 0.00 4.26
32 33 0.832626 TGACATCATGACCGGCAGAT 59.167 50.000 0.00 3.51 0.00 2.90
33 34 2.038659 TGACATCATGACCGGCAGATA 58.961 47.619 0.00 0.00 0.00 1.98
34 35 2.433970 TGACATCATGACCGGCAGATAA 59.566 45.455 0.00 0.00 0.00 1.75
35 36 3.062763 GACATCATGACCGGCAGATAAG 58.937 50.000 0.00 0.00 0.00 1.73
36 37 2.224378 ACATCATGACCGGCAGATAAGG 60.224 50.000 0.00 0.00 0.00 2.69
37 38 0.106708 TCATGACCGGCAGATAAGGC 59.893 55.000 0.00 0.00 0.00 4.35
38 39 0.107456 CATGACCGGCAGATAAGGCT 59.893 55.000 0.00 0.00 0.00 4.58
39 40 0.839946 ATGACCGGCAGATAAGGCTT 59.160 50.000 0.00 4.58 0.00 4.35
40 41 0.178068 TGACCGGCAGATAAGGCTTC 59.822 55.000 1.30 0.00 0.00 3.86
41 42 0.466124 GACCGGCAGATAAGGCTTCT 59.534 55.000 1.30 0.00 0.00 2.85
42 43 0.466124 ACCGGCAGATAAGGCTTCTC 59.534 55.000 1.30 3.27 0.00 2.87
43 44 0.465705 CCGGCAGATAAGGCTTCTCA 59.534 55.000 14.18 0.00 0.00 3.27
44 45 1.539929 CCGGCAGATAAGGCTTCTCAG 60.540 57.143 14.18 7.85 0.00 3.35
45 46 1.137872 CGGCAGATAAGGCTTCTCAGT 59.862 52.381 14.18 0.00 0.00 3.41
46 47 2.801342 CGGCAGATAAGGCTTCTCAGTC 60.801 54.545 14.18 7.37 0.00 3.51
47 48 2.433970 GGCAGATAAGGCTTCTCAGTCT 59.566 50.000 14.18 4.73 36.06 3.24
48 49 3.456280 GCAGATAAGGCTTCTCAGTCTG 58.544 50.000 14.18 15.18 34.13 3.51
49 50 3.740764 GCAGATAAGGCTTCTCAGTCTGG 60.741 52.174 14.18 0.00 34.13 3.86
50 51 3.450457 CAGATAAGGCTTCTCAGTCTGGT 59.550 47.826 14.18 0.00 34.13 4.00
51 52 4.646945 CAGATAAGGCTTCTCAGTCTGGTA 59.353 45.833 14.18 0.00 34.13 3.25
52 53 4.647399 AGATAAGGCTTCTCAGTCTGGTAC 59.353 45.833 14.18 0.00 34.13 3.34
53 54 1.178276 AGGCTTCTCAGTCTGGTACG 58.822 55.000 0.00 0.00 31.88 3.67
54 55 0.889306 GGCTTCTCAGTCTGGTACGT 59.111 55.000 0.00 0.00 0.00 3.57
55 56 1.402984 GGCTTCTCAGTCTGGTACGTG 60.403 57.143 0.00 0.00 0.00 4.49
56 57 1.402984 GCTTCTCAGTCTGGTACGTGG 60.403 57.143 0.00 0.00 0.00 4.94
57 58 2.160205 CTTCTCAGTCTGGTACGTGGA 58.840 52.381 0.00 0.00 0.00 4.02
58 59 2.509166 TCTCAGTCTGGTACGTGGAT 57.491 50.000 0.00 0.00 0.00 3.41
62 63 1.064208 CAGTCTGGTACGTGGATCTCG 59.936 57.143 0.00 8.71 0.00 4.04
87 88 1.578206 GCCCTTCTGTTCAACTCGGC 61.578 60.000 0.00 0.00 0.00 5.54
91 92 0.878523 TTCTGTTCAACTCGGCCGTG 60.879 55.000 27.15 25.86 0.00 4.94
97 98 2.280592 AACTCGGCCGTGTTCACC 60.281 61.111 33.45 0.00 0.00 4.02
114 115 4.379143 CCGCATCGGCATCGCATG 62.379 66.667 0.00 0.00 41.17 4.06
115 116 4.379143 CGCATCGGCATCGCATGG 62.379 66.667 0.00 0.00 41.24 3.66
164 165 2.760092 GCCCCAGTTTGCAGATAATTCA 59.240 45.455 0.00 0.00 0.00 2.57
165 166 3.385755 GCCCCAGTTTGCAGATAATTCAT 59.614 43.478 0.00 0.00 0.00 2.57
166 167 4.141869 GCCCCAGTTTGCAGATAATTCATT 60.142 41.667 0.00 0.00 0.00 2.57
167 168 5.353938 CCCCAGTTTGCAGATAATTCATTG 58.646 41.667 0.00 0.00 0.00 2.82
168 169 4.807304 CCCAGTTTGCAGATAATTCATTGC 59.193 41.667 0.00 2.11 37.09 3.56
169 170 5.412640 CCAGTTTGCAGATAATTCATTGCA 58.587 37.500 6.58 6.58 44.09 4.08
170 171 5.518847 CCAGTTTGCAGATAATTCATTGCAG 59.481 40.000 9.63 1.51 46.02 4.41
171 172 5.518847 CAGTTTGCAGATAATTCATTGCAGG 59.481 40.000 9.63 0.00 46.02 4.85
204 205 2.359354 CCATCGCAACGACCCCAA 60.359 61.111 0.00 0.00 39.18 4.12
215 216 1.354368 ACGACCCCAAATCCTGTTGAT 59.646 47.619 0.00 0.00 34.22 2.57
236 237 1.445582 GACAATCGCGGGAACTCGT 60.446 57.895 6.13 1.04 0.00 4.18
250 251 0.665369 ACTCGTTTCAGCCCGTTACG 60.665 55.000 0.00 0.00 0.00 3.18
283 284 4.395959 ACAATCATCAATCAACCATGGC 57.604 40.909 13.04 0.00 0.00 4.40
285 286 4.142026 ACAATCATCAATCAACCATGGCAG 60.142 41.667 13.04 4.42 0.00 4.85
317 320 1.475751 CGCCCATCTTAGCAACTCCAT 60.476 52.381 0.00 0.00 0.00 3.41
320 323 2.954318 CCCATCTTAGCAACTCCATTGG 59.046 50.000 0.00 0.00 38.88 3.16
321 324 2.954318 CCATCTTAGCAACTCCATTGGG 59.046 50.000 2.09 0.00 38.88 4.12
322 325 2.806945 TCTTAGCAACTCCATTGGGG 57.193 50.000 0.00 0.00 38.88 4.96
361 364 4.455606 GCTTAATCATCAGGTTGTAGCCT 58.544 43.478 0.00 0.00 39.99 4.58
399 402 1.929836 GATCGTGCTCCTGCTTAGTTG 59.070 52.381 0.00 0.00 40.48 3.16
400 403 0.679505 TCGTGCTCCTGCTTAGTTGT 59.320 50.000 0.00 0.00 40.48 3.32
402 405 2.297880 TCGTGCTCCTGCTTAGTTGTTA 59.702 45.455 0.00 0.00 40.48 2.41
403 406 2.412089 CGTGCTCCTGCTTAGTTGTTAC 59.588 50.000 0.00 0.00 40.48 2.50
404 407 3.665190 GTGCTCCTGCTTAGTTGTTACT 58.335 45.455 0.00 0.00 40.48 2.24
406 409 3.263261 GCTCCTGCTTAGTTGTTACTCC 58.737 50.000 0.00 0.00 34.49 3.85
407 410 3.055747 GCTCCTGCTTAGTTGTTACTCCT 60.056 47.826 0.00 0.00 34.49 3.69
408 411 4.563786 GCTCCTGCTTAGTTGTTACTCCTT 60.564 45.833 0.00 0.00 34.49 3.36
409 412 4.894784 TCCTGCTTAGTTGTTACTCCTTG 58.105 43.478 0.00 0.00 35.78 3.61
412 415 4.315803 TGCTTAGTTGTTACTCCTTGAGC 58.684 43.478 0.00 0.00 35.78 4.26
413 416 4.202315 TGCTTAGTTGTTACTCCTTGAGCA 60.202 41.667 0.00 0.00 35.78 4.26
414 417 4.152580 GCTTAGTTGTTACTCCTTGAGCAC 59.847 45.833 0.00 0.00 35.78 4.40
415 418 2.755650 AGTTGTTACTCCTTGAGCACG 58.244 47.619 0.00 0.00 32.04 5.34
416 419 1.194772 GTTGTTACTCCTTGAGCACGC 59.805 52.381 0.00 0.00 32.04 5.34
417 420 0.679505 TGTTACTCCTTGAGCACGCT 59.320 50.000 0.00 0.00 32.04 5.07
418 421 1.071605 GTTACTCCTTGAGCACGCTG 58.928 55.000 0.00 0.00 32.04 5.18
419 422 0.679505 TTACTCCTTGAGCACGCTGT 59.320 50.000 0.00 0.00 32.04 4.40
420 423 0.679505 TACTCCTTGAGCACGCTGTT 59.320 50.000 0.00 0.00 32.04 3.16
421 424 0.882042 ACTCCTTGAGCACGCTGTTG 60.882 55.000 0.00 0.00 32.04 3.33
422 425 2.180131 CTCCTTGAGCACGCTGTTGC 62.180 60.000 0.00 0.00 43.34 4.17
423 426 2.545596 CCTTGAGCACGCTGTTGCA 61.546 57.895 0.00 0.00 45.62 4.08
424 427 1.369689 CTTGAGCACGCTGTTGCAC 60.370 57.895 0.00 0.00 45.62 4.57
425 428 2.050639 CTTGAGCACGCTGTTGCACA 62.051 55.000 0.00 1.97 45.62 4.57
433 436 4.350620 CTGTTGCACAGTCGAGCT 57.649 55.556 7.80 0.00 41.19 4.09
441 444 3.699894 CAGTCGAGCTGCCACCCT 61.700 66.667 0.00 0.00 38.52 4.34
442 445 2.037367 AGTCGAGCTGCCACCCTA 59.963 61.111 0.00 0.00 0.00 3.53
443 446 2.184579 GTCGAGCTGCCACCCTAC 59.815 66.667 0.00 0.00 0.00 3.18
444 447 2.037367 TCGAGCTGCCACCCTACT 59.963 61.111 0.00 0.00 0.00 2.57
445 448 1.609501 TCGAGCTGCCACCCTACTT 60.610 57.895 0.00 0.00 0.00 2.24
446 449 1.153549 CGAGCTGCCACCCTACTTC 60.154 63.158 0.00 0.00 0.00 3.01
447 450 1.153549 GAGCTGCCACCCTACTTCG 60.154 63.158 0.00 0.00 0.00 3.79
448 451 1.889530 GAGCTGCCACCCTACTTCGT 61.890 60.000 0.00 0.00 0.00 3.85
449 452 1.741770 GCTGCCACCCTACTTCGTG 60.742 63.158 0.00 0.00 0.00 4.35
452 455 2.267961 CCACCCTACTTCGTGGCC 59.732 66.667 0.00 0.00 42.92 5.36
453 456 2.589157 CCACCCTACTTCGTGGCCA 61.589 63.158 0.00 0.00 42.92 5.36
454 457 1.079127 CACCCTACTTCGTGGCCAG 60.079 63.158 5.11 0.00 0.00 4.85
455 458 2.291043 ACCCTACTTCGTGGCCAGG 61.291 63.158 19.57 19.57 0.00 4.45
456 459 1.987855 CCCTACTTCGTGGCCAGGA 60.988 63.158 23.92 23.92 0.00 3.86
457 460 1.517832 CCTACTTCGTGGCCAGGAG 59.482 63.158 25.88 21.23 0.00 3.69
458 461 1.258445 CCTACTTCGTGGCCAGGAGT 61.258 60.000 25.88 24.84 0.00 3.85
459 462 1.471119 CTACTTCGTGGCCAGGAGTA 58.529 55.000 25.88 24.66 0.00 2.59
460 463 1.405821 CTACTTCGTGGCCAGGAGTAG 59.594 57.143 29.52 29.52 0.00 2.57
461 464 0.542232 ACTTCGTGGCCAGGAGTAGT 60.542 55.000 25.88 23.56 0.00 2.73
462 465 0.608640 CTTCGTGGCCAGGAGTAGTT 59.391 55.000 25.88 0.00 0.00 2.24
463 466 1.822990 CTTCGTGGCCAGGAGTAGTTA 59.177 52.381 25.88 11.15 0.00 2.24
464 467 1.927487 TCGTGGCCAGGAGTAGTTAA 58.073 50.000 23.92 0.00 0.00 2.01
465 468 2.463752 TCGTGGCCAGGAGTAGTTAAT 58.536 47.619 23.92 0.00 0.00 1.40
466 469 2.167693 TCGTGGCCAGGAGTAGTTAATG 59.832 50.000 23.92 0.00 0.00 1.90
467 470 2.167693 CGTGGCCAGGAGTAGTTAATGA 59.832 50.000 20.97 0.00 0.00 2.57
468 471 3.369052 CGTGGCCAGGAGTAGTTAATGAA 60.369 47.826 20.97 0.00 0.00 2.57
469 472 4.585879 GTGGCCAGGAGTAGTTAATGAAA 58.414 43.478 5.11 0.00 0.00 2.69
470 473 4.636206 GTGGCCAGGAGTAGTTAATGAAAG 59.364 45.833 5.11 0.00 0.00 2.62
471 474 4.288626 TGGCCAGGAGTAGTTAATGAAAGT 59.711 41.667 0.00 0.00 0.00 2.66
472 475 4.876679 GGCCAGGAGTAGTTAATGAAAGTC 59.123 45.833 0.00 0.00 0.00 3.01
477 480 6.312426 CAGGAGTAGTTAATGAAAGTCTGCTG 59.688 42.308 0.00 0.00 32.95 4.41
541 546 0.604780 CTTCCATATGGGCCAGAGCG 60.605 60.000 21.78 2.50 41.24 5.03
560 565 5.897250 AGAGCGAAAATAAATAAACCCCCAT 59.103 36.000 0.00 0.00 0.00 4.00
589 594 0.938168 GTCGAGCGACTCCGTTTTGT 60.938 55.000 15.13 0.00 41.57 2.83
590 595 0.249155 TCGAGCGACTCCGTTTTGTT 60.249 50.000 0.00 0.00 38.24 2.83
591 596 0.580104 CGAGCGACTCCGTTTTGTTT 59.420 50.000 0.00 0.00 38.24 2.83
592 597 1.656429 CGAGCGACTCCGTTTTGTTTG 60.656 52.381 0.00 0.00 38.24 2.93
593 598 1.329599 GAGCGACTCCGTTTTGTTTGT 59.670 47.619 0.00 0.00 38.24 2.83
594 599 1.741145 AGCGACTCCGTTTTGTTTGTT 59.259 42.857 0.00 0.00 38.24 2.83
595 600 2.162809 AGCGACTCCGTTTTGTTTGTTT 59.837 40.909 0.00 0.00 38.24 2.83
596 601 2.277834 GCGACTCCGTTTTGTTTGTTTG 59.722 45.455 0.00 0.00 38.24 2.93
597 602 3.494232 CGACTCCGTTTTGTTTGTTTGT 58.506 40.909 0.00 0.00 0.00 2.83
598 603 3.915569 CGACTCCGTTTTGTTTGTTTGTT 59.084 39.130 0.00 0.00 0.00 2.83
599 604 4.383351 CGACTCCGTTTTGTTTGTTTGTTT 59.617 37.500 0.00 0.00 0.00 2.83
600 605 5.568296 CGACTCCGTTTTGTTTGTTTGTTTA 59.432 36.000 0.00 0.00 0.00 2.01
601 606 6.451441 CGACTCCGTTTTGTTTGTTTGTTTAC 60.451 38.462 0.00 0.00 0.00 2.01
602 607 6.448852 ACTCCGTTTTGTTTGTTTGTTTACT 58.551 32.000 0.00 0.00 0.00 2.24
603 608 6.924612 ACTCCGTTTTGTTTGTTTGTTTACTT 59.075 30.769 0.00 0.00 0.00 2.24
604 609 7.095982 ACTCCGTTTTGTTTGTTTGTTTACTTG 60.096 33.333 0.00 0.00 0.00 3.16
623 629 0.107654 GGGAGTTCCACGGAAGGATG 60.108 60.000 0.00 0.00 37.56 3.51
626 632 0.400213 AGTTCCACGGAAGGATGCAA 59.600 50.000 0.00 0.00 37.56 4.08
631 637 2.896685 TCCACGGAAGGATGCAAAAATT 59.103 40.909 0.00 0.00 31.23 1.82
636 642 4.463891 ACGGAAGGATGCAAAAATTCAGAT 59.536 37.500 0.00 0.00 0.00 2.90
639 645 4.644103 AGGATGCAAAAATTCAGATCGG 57.356 40.909 0.00 0.00 0.00 4.18
646 652 2.514458 AAATTCAGATCGGGCAGGTT 57.486 45.000 0.00 0.00 0.00 3.50
670 676 1.680338 CTTCCCGTCAAATCCCATCC 58.320 55.000 0.00 0.00 0.00 3.51
732 740 0.546122 TTGACAGCATCCGCCCTATT 59.454 50.000 0.00 0.00 39.83 1.73
735 749 0.107456 ACAGCATCCGCCCTATTCAG 59.893 55.000 0.00 0.00 39.83 3.02
736 750 0.604780 CAGCATCCGCCCTATTCAGG 60.605 60.000 0.00 0.00 42.22 3.86
744 758 3.393472 CCCTATTCAGGCTCAGCAC 57.607 57.895 0.00 0.00 41.08 4.40
745 759 0.179034 CCCTATTCAGGCTCAGCACC 60.179 60.000 0.00 0.00 41.08 5.01
746 760 0.543277 CCTATTCAGGCTCAGCACCA 59.457 55.000 0.00 0.00 34.35 4.17
779 793 3.092301 TCCACACACCACATCAACAAAA 58.908 40.909 0.00 0.00 0.00 2.44
781 795 3.367806 CCACACACCACATCAACAAAACA 60.368 43.478 0.00 0.00 0.00 2.83
782 796 3.611986 CACACACCACATCAACAAAACAC 59.388 43.478 0.00 0.00 0.00 3.32
783 797 2.851235 CACACCACATCAACAAAACACG 59.149 45.455 0.00 0.00 0.00 4.49
785 799 3.191581 ACACCACATCAACAAAACACGAA 59.808 39.130 0.00 0.00 0.00 3.85
788 802 2.781101 CACATCAACAAAACACGAACCG 59.219 45.455 0.00 0.00 0.00 4.44
832 853 0.680280 ACTCGGCTTTCCTCTCGCTA 60.680 55.000 0.00 0.00 0.00 4.26
887 910 1.305381 CTTCTCCTCACTCCCCCGT 60.305 63.158 0.00 0.00 0.00 5.28
902 925 1.663702 CCGTCTTTCGTCGTGCCTT 60.664 57.895 0.00 0.00 37.94 4.35
922 945 2.308968 GATCGAGGCCAGCTGCTTCT 62.309 60.000 8.66 4.73 43.56 2.85
931 954 4.168291 GCTGCTTCTAGCCGGCCT 62.168 66.667 26.15 13.52 41.51 5.19
933 956 2.683572 TGCTTCTAGCCGGCCTGA 60.684 61.111 26.15 19.20 41.51 3.86
951 974 3.286353 CTGACAGATAGAGAGTGAGCCA 58.714 50.000 0.00 0.00 0.00 4.75
952 975 3.698539 CTGACAGATAGAGAGTGAGCCAA 59.301 47.826 0.00 0.00 0.00 4.52
953 976 3.698539 TGACAGATAGAGAGTGAGCCAAG 59.301 47.826 0.00 0.00 0.00 3.61
954 977 2.430332 ACAGATAGAGAGTGAGCCAAGC 59.570 50.000 0.00 0.00 0.00 4.01
955 978 2.694628 CAGATAGAGAGTGAGCCAAGCT 59.305 50.000 0.00 0.00 43.88 3.74
1156 1198 5.685075 AAGAACCTCATCTTCAACGTGAGTT 60.685 40.000 0.00 0.00 42.79 3.01
1188 1233 6.428295 TGTTTTCTTCTTCTTTTCCCCTGTA 58.572 36.000 0.00 0.00 0.00 2.74
1202 1247 3.561120 CTGTAGCAAACCGCCCCCA 62.561 63.158 0.00 0.00 44.04 4.96
1203 1248 3.060000 GTAGCAAACCGCCCCCAC 61.060 66.667 0.00 0.00 44.04 4.61
1265 1310 1.344065 TCACCGTGGAAGCTTTAGGA 58.656 50.000 0.00 0.00 0.00 2.94
1288 1335 8.532819 AGGAACAGAGATAATTATTCGATACCC 58.467 37.037 0.00 0.00 0.00 3.69
1289 1336 8.311836 GGAACAGAGATAATTATTCGATACCCA 58.688 37.037 0.00 0.00 0.00 4.51
1343 1396 4.412843 TCCCGTATCACATGAATAGCCTA 58.587 43.478 0.00 0.00 0.00 3.93
1384 1437 2.360801 GCTGTTGGTTTCTTGGCTTGTA 59.639 45.455 0.00 0.00 0.00 2.41
1416 1469 6.649141 TGATTCACTGTGCTAAAACGTCTTAT 59.351 34.615 2.12 0.00 0.00 1.73
1418 1471 7.576750 TTCACTGTGCTAAAACGTCTTATAG 57.423 36.000 2.12 0.00 0.00 1.31
1477 1574 2.752807 CGAAATGGGGATCGGGGGT 61.753 63.158 0.00 0.00 0.00 4.95
1566 1663 5.063180 TCATGTTCCTTGTCAATGAATGC 57.937 39.130 6.57 0.00 0.00 3.56
1588 1685 4.825422 CTCTGGCACTTGTAGATCAGAAA 58.175 43.478 0.00 0.00 31.95 2.52
1612 1713 8.560124 AATTAATTGGACCCCATAAAATAGCA 57.440 30.769 0.00 0.00 31.53 3.49
1628 1729 2.627515 AGCAGTGAGACTTCAAAGCA 57.372 45.000 0.00 0.00 37.65 3.91
1681 1782 4.443315 GCCATCCTATTTTGAATGGTTGGG 60.443 45.833 0.00 0.00 38.94 4.12
1703 1804 3.091633 ACTTGAATATTGGCCTGCTGT 57.908 42.857 3.32 0.00 0.00 4.40
1925 2227 4.921515 GTGGTACTGTACAGTGTACACATG 59.078 45.833 33.77 21.47 42.52 3.21
1960 2262 7.095187 ACACAGATCGGTTAATTTCTCTCAAAC 60.095 37.037 0.00 0.00 0.00 2.93
2004 2306 2.558378 GTCTACAAGGTATTTCCGGGC 58.442 52.381 0.00 0.00 41.99 6.13
2196 2498 2.156542 GGTAACTCAAACCGACGCC 58.843 57.895 0.00 0.00 0.00 5.68
2197 2499 0.600782 GGTAACTCAAACCGACGCCA 60.601 55.000 0.00 0.00 0.00 5.69
2198 2500 1.435577 GTAACTCAAACCGACGCCAT 58.564 50.000 0.00 0.00 0.00 4.40
2199 2501 1.127951 GTAACTCAAACCGACGCCATG 59.872 52.381 0.00 0.00 0.00 3.66
2200 2502 1.234615 AACTCAAACCGACGCCATGG 61.235 55.000 7.63 7.63 0.00 3.66
2201 2503 3.039202 CTCAAACCGACGCCATGGC 62.039 63.158 27.67 27.67 37.85 4.40
2222 2533 3.511699 CGTCTACAGCATTTGCAGAGTA 58.488 45.455 5.20 4.25 45.16 2.59
2230 2541 4.639310 CAGCATTTGCAGAGTATTCTTCCT 59.361 41.667 5.20 0.00 45.16 3.36
2234 2545 2.586258 GCAGAGTATTCTTCCTGCGA 57.414 50.000 0.00 0.00 41.86 5.10
2235 2546 2.468831 GCAGAGTATTCTTCCTGCGAG 58.531 52.381 0.00 0.00 41.86 5.03
2247 2558 1.148157 CCTGCGAGTCGGCTAATGTG 61.148 60.000 15.52 0.00 0.00 3.21
2248 2559 0.458543 CTGCGAGTCGGCTAATGTGT 60.459 55.000 15.52 0.00 0.00 3.72
2249 2560 0.812549 TGCGAGTCGGCTAATGTGTA 59.187 50.000 15.52 0.00 0.00 2.90
2250 2561 1.197910 GCGAGTCGGCTAATGTGTAC 58.802 55.000 15.52 0.00 0.00 2.90
2252 2563 2.717530 CGAGTCGGCTAATGTGTACTC 58.282 52.381 4.10 0.00 0.00 2.59
2253 2564 2.541178 CGAGTCGGCTAATGTGTACTCC 60.541 54.545 4.10 0.00 31.74 3.85
2537 2854 2.125106 CCTGCGGCTAAGGTGGAC 60.125 66.667 0.00 0.00 0.00 4.02
2540 2857 2.263540 GCGGCTAAGGTGGACGAA 59.736 61.111 0.00 0.00 0.00 3.85
2590 2910 5.938710 TCATCGGTTAGTAGCATCCTAGTAG 59.061 44.000 0.00 0.00 32.52 2.57
2617 2937 1.181001 CGTGCTACTGATCGTCGAAC 58.819 55.000 0.00 0.00 0.00 3.95
2625 2951 1.064208 CTGATCGTCGAACGTCCAGAT 59.936 52.381 0.00 0.00 43.14 2.90
2626 2952 2.282407 TGATCGTCGAACGTCCAGATA 58.718 47.619 0.00 0.00 43.14 1.98
2627 2953 2.679336 TGATCGTCGAACGTCCAGATAA 59.321 45.455 0.00 0.00 43.14 1.75
2628 2954 2.532531 TCGTCGAACGTCCAGATAAC 57.467 50.000 0.00 0.00 43.14 1.89
2630 2956 1.909532 CGTCGAACGTCCAGATAACAC 59.090 52.381 0.00 0.00 36.74 3.32
2676 3002 2.501723 AGATCGGGTGTAAGCACAGAAT 59.498 45.455 0.12 0.00 46.95 2.40
2689 3015 3.681897 AGCACAGAATTCACGTCTGATTC 59.318 43.478 8.44 7.40 44.44 2.52
2734 3060 6.142817 ACGATTTGATTACTGAAAACTGCAC 58.857 36.000 0.00 0.00 0.00 4.57
2748 3074 3.508845 ACTGCACTGGTACCTTTGAAT 57.491 42.857 14.36 0.00 0.00 2.57
2757 3083 6.544931 CACTGGTACCTTTGAATGATCATGAT 59.455 38.462 14.36 8.25 34.96 2.45
2758 3084 7.716560 CACTGGTACCTTTGAATGATCATGATA 59.283 37.037 14.36 0.00 34.96 2.15
2759 3085 8.443176 ACTGGTACCTTTGAATGATCATGATAT 58.557 33.333 14.36 0.00 34.96 1.63
2760 3086 9.293404 CTGGTACCTTTGAATGATCATGATATT 57.707 33.333 14.36 8.83 34.96 1.28
2761 3087 9.645128 TGGTACCTTTGAATGATCATGATATTT 57.355 29.630 14.36 5.25 34.96 1.40
2795 3122 1.146774 TGAAAAGGGGAACATGCCTGA 59.853 47.619 0.00 0.00 0.00 3.86
2804 3131 0.111061 AACATGCCTGACCTCTGCAA 59.889 50.000 0.00 0.00 38.69 4.08
2908 3235 7.750229 AGCAAGACTCAAACATGAAAATCTA 57.250 32.000 0.00 0.00 0.00 1.98
2933 3261 1.234615 AACGGAATGCCACAACCGAG 61.235 55.000 18.36 0.00 46.94 4.63
2937 3265 1.200020 GGAATGCCACAACCGAGAAAG 59.800 52.381 0.00 0.00 0.00 2.62
2946 3275 4.401519 CCACAACCGAGAAAGATAGGACTA 59.598 45.833 0.00 0.00 0.00 2.59
2975 3304 8.834004 TGACTAAACACCTATCCTATTAGTGT 57.166 34.615 0.00 0.00 34.66 3.55
2995 3328 0.253610 ATCGCCATCCAAACCGGTTA 59.746 50.000 22.60 5.30 35.57 2.85
2998 3331 1.600485 CGCCATCCAAACCGGTTATAC 59.400 52.381 22.60 5.57 35.57 1.47
3009 3344 5.836024 AACCGGTTATACATATCCCATGT 57.164 39.130 20.78 0.00 36.13 3.21
3017 3352 3.380479 ACATATCCCATGTTACCGTCG 57.620 47.619 0.00 0.00 0.00 5.12
3018 3353 2.960384 ACATATCCCATGTTACCGTCGA 59.040 45.455 0.00 0.00 0.00 4.20
3019 3354 3.576982 ACATATCCCATGTTACCGTCGAT 59.423 43.478 0.00 0.00 0.00 3.59
3020 3355 4.039973 ACATATCCCATGTTACCGTCGATT 59.960 41.667 0.00 0.00 0.00 3.34
3048 3383 1.686587 GCACCCAGTAACCAAAAGCTT 59.313 47.619 0.00 0.00 0.00 3.74
3051 3386 1.893137 CCCAGTAACCAAAAGCTTCCC 59.107 52.381 0.00 0.00 0.00 3.97
3056 3391 0.467290 AACCAAAAGCTTCCCGCAGA 60.467 50.000 0.00 0.00 42.61 4.26
3063 3419 2.967397 CTTCCCGCAGACCGTACA 59.033 61.111 0.00 0.00 34.38 2.90
3075 3431 2.688958 AGACCGTACAGATCCAAGTAGC 59.311 50.000 0.00 0.00 0.00 3.58
3087 3443 2.232452 TCCAAGTAGCAGCTCTGAAGAC 59.768 50.000 0.00 0.00 0.00 3.01
3099 3455 4.215827 AGCTCTGAAGACAATCTGCAAAAG 59.784 41.667 0.00 0.00 30.11 2.27
3103 3459 7.099266 TCTGAAGACAATCTGCAAAAGAAAA 57.901 32.000 0.00 0.00 38.79 2.29
3178 3548 2.304761 GCATATTCCTATCCGGGTTCCA 59.695 50.000 0.00 0.00 0.00 3.53
3237 3607 4.497300 ACAACATGTCAATGCTAATTGGC 58.503 39.130 6.88 6.88 46.60 4.52
3241 3611 1.388547 GTCAATGCTAATTGGCGGGA 58.611 50.000 9.40 3.74 42.97 5.14
3243 3613 2.362077 GTCAATGCTAATTGGCGGGATT 59.638 45.455 9.40 0.87 42.97 3.01
3247 3617 1.885887 TGCTAATTGGCGGGATTATGC 59.114 47.619 9.40 0.00 34.52 3.14
3268 3638 5.853936 TGCTAAAGGCTATATGAATCGTGT 58.146 37.500 0.00 0.00 42.39 4.49
3303 3673 1.340991 GCTAGGGGGCAGTCAATGAAA 60.341 52.381 0.00 0.00 0.00 2.69
3369 3739 1.760613 CTACCAACCCATCTTCGCCTA 59.239 52.381 0.00 0.00 0.00 3.93
3371 3741 1.353022 ACCAACCCATCTTCGCCTAAA 59.647 47.619 0.00 0.00 0.00 1.85
3423 3793 3.810310 TGGACAAACCACATGAAAACC 57.190 42.857 0.00 0.00 44.64 3.27
3424 3794 3.099905 TGGACAAACCACATGAAAACCA 58.900 40.909 0.00 0.00 44.64 3.67
3425 3795 3.118956 TGGACAAACCACATGAAAACCAC 60.119 43.478 0.00 0.00 44.64 4.16
3426 3796 3.118956 GGACAAACCACATGAAAACCACA 60.119 43.478 0.00 0.00 38.79 4.17
3427 3797 4.442753 GGACAAACCACATGAAAACCACAT 60.443 41.667 0.00 0.00 38.79 3.21
3428 3798 4.440880 ACAAACCACATGAAAACCACATG 58.559 39.130 0.00 0.00 46.96 3.21
3429 3799 4.161189 ACAAACCACATGAAAACCACATGA 59.839 37.500 13.54 0.00 45.22 3.07
3430 3800 5.114780 CAAACCACATGAAAACCACATGAA 58.885 37.500 13.54 0.00 45.22 2.57
3431 3801 5.549742 AACCACATGAAAACCACATGAAT 57.450 34.783 13.54 0.00 45.22 2.57
3432 3802 4.885413 ACCACATGAAAACCACATGAATG 58.115 39.130 13.54 3.95 45.22 2.67
3433 3803 4.588106 ACCACATGAAAACCACATGAATGA 59.412 37.500 13.54 0.00 45.22 2.57
3434 3804 5.246656 ACCACATGAAAACCACATGAATGAT 59.753 36.000 13.54 0.00 45.22 2.45
3435 3805 5.808540 CCACATGAAAACCACATGAATGATC 59.191 40.000 13.54 0.00 45.22 2.92
3436 3806 6.391537 CACATGAAAACCACATGAATGATCA 58.608 36.000 13.54 0.00 45.22 2.92
3451 3821 7.391148 TGAATGATCATGATATGGCTTGATG 57.609 36.000 9.46 0.00 34.13 3.07
3452 3822 7.172342 TGAATGATCATGATATGGCTTGATGA 58.828 34.615 9.46 0.00 34.13 2.92
3453 3823 7.336931 TGAATGATCATGATATGGCTTGATGAG 59.663 37.037 9.46 0.00 34.13 2.90
3454 3824 6.123045 TGATCATGATATGGCTTGATGAGT 57.877 37.500 8.54 0.00 34.13 3.41
3455 3825 6.540083 TGATCATGATATGGCTTGATGAGTT 58.460 36.000 8.54 0.00 34.13 3.01
3456 3826 6.430000 TGATCATGATATGGCTTGATGAGTTG 59.570 38.462 8.54 0.00 34.13 3.16
3457 3827 5.932455 TCATGATATGGCTTGATGAGTTGA 58.068 37.500 0.00 0.00 0.00 3.18
3458 3828 6.540083 TCATGATATGGCTTGATGAGTTGAT 58.460 36.000 0.00 0.00 0.00 2.57
3459 3829 7.002276 TCATGATATGGCTTGATGAGTTGATT 58.998 34.615 0.00 0.00 0.00 2.57
3460 3830 6.628919 TGATATGGCTTGATGAGTTGATTG 57.371 37.500 0.00 0.00 0.00 2.67
3461 3831 6.124340 TGATATGGCTTGATGAGTTGATTGT 58.876 36.000 0.00 0.00 0.00 2.71
3462 3832 6.604396 TGATATGGCTTGATGAGTTGATTGTT 59.396 34.615 0.00 0.00 0.00 2.83
3463 3833 5.733620 ATGGCTTGATGAGTTGATTGTTT 57.266 34.783 0.00 0.00 0.00 2.83
3464 3834 5.534207 TGGCTTGATGAGTTGATTGTTTT 57.466 34.783 0.00 0.00 0.00 2.43
3465 3835 5.916318 TGGCTTGATGAGTTGATTGTTTTT 58.084 33.333 0.00 0.00 0.00 1.94
3466 3836 7.048629 TGGCTTGATGAGTTGATTGTTTTTA 57.951 32.000 0.00 0.00 0.00 1.52
3467 3837 7.669427 TGGCTTGATGAGTTGATTGTTTTTAT 58.331 30.769 0.00 0.00 0.00 1.40
3468 3838 8.801299 TGGCTTGATGAGTTGATTGTTTTTATA 58.199 29.630 0.00 0.00 0.00 0.98
3469 3839 9.638239 GGCTTGATGAGTTGATTGTTTTTATAA 57.362 29.630 0.00 0.00 0.00 0.98
3476 3846 9.672086 TGAGTTGATTGTTTTTATAAAAGGACG 57.328 29.630 10.40 0.00 0.00 4.79
3477 3847 9.673454 GAGTTGATTGTTTTTATAAAAGGACGT 57.327 29.630 10.40 0.00 0.00 4.34
3488 3858 9.810231 TTTTATAAAAGGACGTTTTATGTCGAC 57.190 29.630 25.46 9.11 46.46 4.20
3489 3859 8.761575 TTATAAAAGGACGTTTTATGTCGACT 57.238 30.769 25.46 4.95 46.46 4.18
3490 3860 5.587033 AAAAGGACGTTTTATGTCGACTC 57.413 39.130 17.92 2.78 36.54 3.36
3491 3861 3.928727 AGGACGTTTTATGTCGACTCA 57.071 42.857 17.92 0.92 35.01 3.41
3492 3862 4.451629 AGGACGTTTTATGTCGACTCAT 57.548 40.909 17.92 5.39 35.01 2.90
3493 3863 5.571784 AGGACGTTTTATGTCGACTCATA 57.428 39.130 17.92 4.32 35.01 2.15
3494 3864 5.957798 AGGACGTTTTATGTCGACTCATAA 58.042 37.500 17.92 10.47 38.15 1.90
3495 3865 6.570692 AGGACGTTTTATGTCGACTCATAAT 58.429 36.000 17.92 3.75 39.17 1.28
3496 3866 6.475727 AGGACGTTTTATGTCGACTCATAATG 59.524 38.462 17.92 12.90 39.17 1.90
3497 3867 6.255020 GGACGTTTTATGTCGACTCATAATGT 59.745 38.462 17.92 15.66 39.17 2.71
3498 3868 7.433131 GGACGTTTTATGTCGACTCATAATGTA 59.567 37.037 17.92 0.00 39.17 2.29
3499 3869 8.336498 ACGTTTTATGTCGACTCATAATGTAG 57.664 34.615 17.92 7.88 39.17 2.74
3500 3870 7.043590 ACGTTTTATGTCGACTCATAATGTAGC 60.044 37.037 17.92 0.98 39.17 3.58
3501 3871 7.043656 CGTTTTATGTCGACTCATAATGTAGCA 60.044 37.037 17.92 0.00 39.17 3.49
3502 3872 8.600625 GTTTTATGTCGACTCATAATGTAGCAA 58.399 33.333 17.92 1.49 39.17 3.91
3503 3873 8.710835 TTTATGTCGACTCATAATGTAGCAAA 57.289 30.769 17.92 0.00 39.17 3.68
3504 3874 6.589830 ATGTCGACTCATAATGTAGCAAAC 57.410 37.500 17.92 0.00 0.00 2.93
3505 3875 5.474825 TGTCGACTCATAATGTAGCAAACA 58.525 37.500 17.92 0.00 43.86 2.83
3533 3903 9.838975 CAAAGATACAAATACAATTAGCACACA 57.161 29.630 0.00 0.00 0.00 3.72
3537 3907 9.289303 GATACAAATACAATTAGCACACAAAGG 57.711 33.333 0.00 0.00 0.00 3.11
3538 3908 6.454795 ACAAATACAATTAGCACACAAAGGG 58.545 36.000 0.00 0.00 0.00 3.95
3551 3921 6.395426 CACACAAAGGGCATATGTATGATT 57.605 37.500 4.29 0.00 35.75 2.57
3552 3922 7.509141 CACACAAAGGGCATATGTATGATTA 57.491 36.000 4.29 0.00 35.75 1.75
3553 3923 7.587629 CACACAAAGGGCATATGTATGATTAG 58.412 38.462 4.29 0.00 35.75 1.73
3554 3924 6.716628 ACACAAAGGGCATATGTATGATTAGG 59.283 38.462 4.29 0.00 35.75 2.69
3555 3925 6.942005 CACAAAGGGCATATGTATGATTAGGA 59.058 38.462 4.29 0.00 35.75 2.94
3556 3926 7.613022 CACAAAGGGCATATGTATGATTAGGAT 59.387 37.037 4.29 0.00 35.75 3.24
3557 3927 7.613022 ACAAAGGGCATATGTATGATTAGGATG 59.387 37.037 4.29 0.00 35.75 3.51
3558 3928 5.688807 AGGGCATATGTATGATTAGGATGC 58.311 41.667 4.29 0.00 37.95 3.91
3559 3929 5.192321 AGGGCATATGTATGATTAGGATGCA 59.808 40.000 4.29 0.00 39.92 3.96
3560 3930 5.297776 GGGCATATGTATGATTAGGATGCAC 59.702 44.000 4.29 0.00 39.92 4.57
3561 3931 5.882000 GGCATATGTATGATTAGGATGCACA 59.118 40.000 4.29 0.00 39.92 4.57
3562 3932 6.544931 GGCATATGTATGATTAGGATGCACAT 59.455 38.462 4.29 0.00 39.92 3.21
3563 3933 7.415229 GCATATGTATGATTAGGATGCACATG 58.585 38.462 4.29 0.00 38.43 3.21
3564 3934 7.066645 GCATATGTATGATTAGGATGCACATGT 59.933 37.037 4.29 0.00 38.43 3.21
3565 3935 6.812879 ATGTATGATTAGGATGCACATGTG 57.187 37.500 21.83 21.83 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.686726 GGTCATGATGTCAAGTCTGAACC 59.313 47.826 0.00 0.00 31.88 3.62
4 5 3.369147 CGGTCATGATGTCAAGTCTGAAC 59.631 47.826 0.00 0.00 31.88 3.18
8 9 1.406069 GCCGGTCATGATGTCAAGTCT 60.406 52.381 1.90 0.00 0.00 3.24
9 10 1.009829 GCCGGTCATGATGTCAAGTC 58.990 55.000 1.90 0.00 0.00 3.01
10 11 0.324614 TGCCGGTCATGATGTCAAGT 59.675 50.000 1.90 0.00 0.00 3.16
11 12 1.012086 CTGCCGGTCATGATGTCAAG 58.988 55.000 1.90 0.00 0.00 3.02
14 15 2.820059 TATCTGCCGGTCATGATGTC 57.180 50.000 1.90 0.00 0.00 3.06
15 16 2.224378 CCTTATCTGCCGGTCATGATGT 60.224 50.000 1.90 0.00 0.00 3.06
16 17 2.420642 CCTTATCTGCCGGTCATGATG 58.579 52.381 1.90 0.00 0.00 3.07
17 18 1.271054 GCCTTATCTGCCGGTCATGAT 60.271 52.381 1.90 9.11 0.00 2.45
18 19 0.106708 GCCTTATCTGCCGGTCATGA 59.893 55.000 1.90 0.00 0.00 3.07
19 20 0.107456 AGCCTTATCTGCCGGTCATG 59.893 55.000 1.90 0.00 0.00 3.07
20 21 0.839946 AAGCCTTATCTGCCGGTCAT 59.160 50.000 1.90 0.00 0.00 3.06
21 22 0.178068 GAAGCCTTATCTGCCGGTCA 59.822 55.000 1.90 0.00 0.00 4.02
22 23 0.466124 AGAAGCCTTATCTGCCGGTC 59.534 55.000 1.90 0.00 0.00 4.79
23 24 0.466124 GAGAAGCCTTATCTGCCGGT 59.534 55.000 1.90 0.00 0.00 5.28
24 25 0.465705 TGAGAAGCCTTATCTGCCGG 59.534 55.000 0.00 0.00 0.00 6.13
25 26 1.137872 ACTGAGAAGCCTTATCTGCCG 59.862 52.381 5.95 0.00 0.00 5.69
26 27 2.433970 AGACTGAGAAGCCTTATCTGCC 59.566 50.000 5.95 0.00 0.00 4.85
27 28 3.456280 CAGACTGAGAAGCCTTATCTGC 58.544 50.000 5.95 0.56 0.00 4.26
28 29 3.450457 ACCAGACTGAGAAGCCTTATCTG 59.550 47.826 3.32 4.64 33.45 2.90
29 30 3.718723 ACCAGACTGAGAAGCCTTATCT 58.281 45.455 3.32 0.00 0.00 1.98
30 31 4.498345 CGTACCAGACTGAGAAGCCTTATC 60.498 50.000 3.32 0.00 0.00 1.75
31 32 3.381908 CGTACCAGACTGAGAAGCCTTAT 59.618 47.826 3.32 0.00 0.00 1.73
32 33 2.753452 CGTACCAGACTGAGAAGCCTTA 59.247 50.000 3.32 0.00 0.00 2.69
33 34 1.546476 CGTACCAGACTGAGAAGCCTT 59.454 52.381 3.32 0.00 0.00 4.35
34 35 1.178276 CGTACCAGACTGAGAAGCCT 58.822 55.000 3.32 0.00 0.00 4.58
35 36 0.889306 ACGTACCAGACTGAGAAGCC 59.111 55.000 3.32 0.00 0.00 4.35
36 37 1.402984 CCACGTACCAGACTGAGAAGC 60.403 57.143 3.32 0.00 0.00 3.86
37 38 2.160205 TCCACGTACCAGACTGAGAAG 58.840 52.381 3.32 0.00 0.00 2.85
38 39 2.281539 TCCACGTACCAGACTGAGAA 57.718 50.000 3.32 0.00 0.00 2.87
39 40 2.026169 AGATCCACGTACCAGACTGAGA 60.026 50.000 3.32 0.00 0.00 3.27
40 41 2.356382 GAGATCCACGTACCAGACTGAG 59.644 54.545 3.32 0.00 0.00 3.35
41 42 2.366533 GAGATCCACGTACCAGACTGA 58.633 52.381 3.32 0.00 0.00 3.41
42 43 1.064208 CGAGATCCACGTACCAGACTG 59.936 57.143 0.00 0.00 0.00 3.51
43 44 1.339824 ACGAGATCCACGTACCAGACT 60.340 52.381 12.66 0.00 42.17 3.24
44 45 1.093159 ACGAGATCCACGTACCAGAC 58.907 55.000 12.66 0.00 42.17 3.51
45 46 1.092348 CACGAGATCCACGTACCAGA 58.908 55.000 13.64 0.00 42.07 3.86
46 47 0.525668 GCACGAGATCCACGTACCAG 60.526 60.000 13.64 4.99 42.07 4.00
47 48 1.509463 GCACGAGATCCACGTACCA 59.491 57.895 13.64 0.00 42.07 3.25
48 49 1.585521 CGCACGAGATCCACGTACC 60.586 63.158 13.64 8.33 42.07 3.34
49 50 2.222217 GCGCACGAGATCCACGTAC 61.222 63.158 13.64 8.67 42.07 3.67
50 51 2.101575 GCGCACGAGATCCACGTA 59.898 61.111 13.64 0.00 42.07 3.57
62 63 4.090057 GAACAGAAGGGCGCGCAC 62.090 66.667 34.42 32.15 0.00 5.34
75 76 1.153329 AACACGGCCGAGTTGAACA 60.153 52.632 35.06 0.00 0.00 3.18
87 88 3.487202 CGATGCGGGTGAACACGG 61.487 66.667 7.28 0.00 44.19 4.94
146 147 5.412640 TGCAATGAATTATCTGCAAACTGG 58.587 37.500 5.57 0.00 41.61 4.00
167 168 4.332637 CACACCGCTGCAACCTGC 62.333 66.667 0.00 0.00 45.29 4.85
168 169 4.332637 GCACACCGCTGCAACCTG 62.333 66.667 0.00 0.00 37.11 4.00
180 181 4.101790 CGTTGCGATGGGGCACAC 62.102 66.667 0.00 0.00 43.82 3.82
182 183 3.799755 GTCGTTGCGATGGGGCAC 61.800 66.667 0.00 0.00 43.82 5.01
188 189 0.098728 GATTTGGGGTCGTTGCGATG 59.901 55.000 0.00 0.00 38.42 3.84
189 190 1.029947 GGATTTGGGGTCGTTGCGAT 61.030 55.000 0.00 0.00 38.42 4.58
204 205 3.282021 CGATTGTCCCATCAACAGGATT 58.718 45.455 0.00 0.00 32.57 3.01
215 216 2.046700 GTTCCCGCGATTGTCCCA 60.047 61.111 8.23 0.00 0.00 4.37
221 222 0.320073 TGAAACGAGTTCCCGCGATT 60.320 50.000 8.23 0.00 37.33 3.34
250 251 1.664151 GATGATTGTTCCGTTCCGTCC 59.336 52.381 0.00 0.00 0.00 4.79
262 263 3.770388 TGCCATGGTTGATTGATGATTGT 59.230 39.130 14.67 0.00 0.00 2.71
333 336 4.460382 ACAACCTGATGATTAAGCCAAGTG 59.540 41.667 0.00 0.00 0.00 3.16
361 364 1.078497 CATACTGCCTGGCCACGAA 60.078 57.895 17.53 0.00 0.00 3.85
399 402 1.071605 CAGCGTGCTCAAGGAGTAAC 58.928 55.000 0.00 0.00 31.39 2.50
400 403 0.679505 ACAGCGTGCTCAAGGAGTAA 59.320 50.000 0.00 0.00 31.39 2.24
402 405 0.882042 CAACAGCGTGCTCAAGGAGT 60.882 55.000 0.00 0.00 31.39 3.85
403 406 1.864862 CAACAGCGTGCTCAAGGAG 59.135 57.895 0.00 0.00 0.00 3.69
404 407 2.253758 GCAACAGCGTGCTCAAGGA 61.254 57.895 0.00 0.00 41.51 3.36
406 409 1.369689 GTGCAACAGCGTGCTCAAG 60.370 57.895 10.70 0.00 45.17 3.02
407 410 2.111582 TGTGCAACAGCGTGCTCAA 61.112 52.632 10.89 0.00 45.67 3.02
408 411 2.513435 TGTGCAACAGCGTGCTCA 60.513 55.556 10.70 10.18 45.67 4.26
425 428 2.037367 TAGGGTGGCAGCTCGACT 59.963 61.111 17.16 7.50 0.00 4.18
426 429 1.889530 AAGTAGGGTGGCAGCTCGAC 61.890 60.000 17.16 12.43 0.00 4.20
427 430 1.605058 GAAGTAGGGTGGCAGCTCGA 61.605 60.000 17.16 0.33 0.00 4.04
428 431 1.153549 GAAGTAGGGTGGCAGCTCG 60.154 63.158 17.16 0.00 0.00 5.03
429 432 1.153549 CGAAGTAGGGTGGCAGCTC 60.154 63.158 17.16 6.85 0.00 4.09
430 433 1.913762 ACGAAGTAGGGTGGCAGCT 60.914 57.895 17.16 5.32 41.94 4.24
431 434 1.741770 CACGAAGTAGGGTGGCAGC 60.742 63.158 8.47 8.47 41.61 5.25
432 435 1.079127 CCACGAAGTAGGGTGGCAG 60.079 63.158 0.00 0.00 46.34 4.85
433 436 3.065306 CCACGAAGTAGGGTGGCA 58.935 61.111 0.00 0.00 46.34 4.92
436 439 1.079127 CTGGCCACGAAGTAGGGTG 60.079 63.158 0.00 0.00 41.61 4.61
437 440 2.291043 CCTGGCCACGAAGTAGGGT 61.291 63.158 0.00 0.00 41.61 4.34
438 441 1.961180 CTCCTGGCCACGAAGTAGGG 61.961 65.000 0.00 0.00 41.61 3.53
439 442 1.258445 ACTCCTGGCCACGAAGTAGG 61.258 60.000 0.00 0.00 41.61 3.18
440 443 1.405821 CTACTCCTGGCCACGAAGTAG 59.594 57.143 21.34 21.34 41.61 2.57
441 444 1.272313 ACTACTCCTGGCCACGAAGTA 60.272 52.381 0.00 9.08 41.61 2.24
443 446 0.608640 AACTACTCCTGGCCACGAAG 59.391 55.000 0.00 1.20 0.00 3.79
444 447 1.927487 TAACTACTCCTGGCCACGAA 58.073 50.000 0.00 0.00 0.00 3.85
445 448 1.927487 TTAACTACTCCTGGCCACGA 58.073 50.000 0.00 1.86 0.00 4.35
446 449 2.167693 TCATTAACTACTCCTGGCCACG 59.832 50.000 0.00 0.00 0.00 4.94
447 450 3.906720 TCATTAACTACTCCTGGCCAC 57.093 47.619 0.00 0.00 0.00 5.01
448 451 4.288626 ACTTTCATTAACTACTCCTGGCCA 59.711 41.667 4.71 4.71 0.00 5.36
449 452 4.844884 ACTTTCATTAACTACTCCTGGCC 58.155 43.478 0.00 0.00 0.00 5.36
450 453 5.582665 CAGACTTTCATTAACTACTCCTGGC 59.417 44.000 0.00 0.00 0.00 4.85
451 454 5.582665 GCAGACTTTCATTAACTACTCCTGG 59.417 44.000 0.00 0.00 0.00 4.45
452 455 6.312426 CAGCAGACTTTCATTAACTACTCCTG 59.688 42.308 0.00 0.00 0.00 3.86
453 456 6.014156 ACAGCAGACTTTCATTAACTACTCCT 60.014 38.462 0.00 0.00 0.00 3.69
454 457 6.166982 ACAGCAGACTTTCATTAACTACTCC 58.833 40.000 0.00 0.00 0.00 3.85
455 458 7.513968 CAACAGCAGACTTTCATTAACTACTC 58.486 38.462 0.00 0.00 0.00 2.59
456 459 6.073003 GCAACAGCAGACTTTCATTAACTACT 60.073 38.462 0.00 0.00 0.00 2.57
457 460 6.080406 GCAACAGCAGACTTTCATTAACTAC 58.920 40.000 0.00 0.00 0.00 2.73
458 461 5.762711 TGCAACAGCAGACTTTCATTAACTA 59.237 36.000 0.00 0.00 33.59 2.24
459 462 4.580167 TGCAACAGCAGACTTTCATTAACT 59.420 37.500 0.00 0.00 33.59 2.24
460 463 4.676924 GTGCAACAGCAGACTTTCATTAAC 59.323 41.667 0.00 0.00 39.30 2.01
461 464 4.337836 TGTGCAACAGCAGACTTTCATTAA 59.662 37.500 0.00 0.00 45.67 1.40
462 465 3.882288 TGTGCAACAGCAGACTTTCATTA 59.118 39.130 0.00 0.00 45.67 1.90
463 466 2.689471 TGTGCAACAGCAGACTTTCATT 59.311 40.909 0.00 0.00 45.67 2.57
464 467 2.300433 TGTGCAACAGCAGACTTTCAT 58.700 42.857 0.00 0.00 45.67 2.57
465 468 1.748950 TGTGCAACAGCAGACTTTCA 58.251 45.000 0.00 0.00 45.67 2.69
573 578 1.329599 ACAAACAAAACGGAGTCGCTC 59.670 47.619 0.00 0.00 45.00 5.03
589 594 5.480772 TGGAACTCCCAAGTAAACAAACAAA 59.519 36.000 0.00 0.00 43.29 2.83
590 595 5.017490 TGGAACTCCCAAGTAAACAAACAA 58.983 37.500 0.00 0.00 43.29 2.83
591 596 4.601084 TGGAACTCCCAAGTAAACAAACA 58.399 39.130 0.00 0.00 43.29 2.83
603 608 0.546747 ATCCTTCCGTGGAACTCCCA 60.547 55.000 0.00 0.00 44.25 4.37
604 609 0.107654 CATCCTTCCGTGGAACTCCC 60.108 60.000 0.00 0.00 39.85 4.30
623 629 2.533266 CTGCCCGATCTGAATTTTTGC 58.467 47.619 0.00 0.00 0.00 3.68
626 632 2.514458 ACCTGCCCGATCTGAATTTT 57.486 45.000 0.00 0.00 0.00 1.82
631 637 1.065709 GGTTTAACCTGCCCGATCTGA 60.066 52.381 6.92 0.00 34.73 3.27
646 652 2.375845 TGGGATTTGACGGGAAGGTTTA 59.624 45.455 0.00 0.00 0.00 2.01
670 676 1.142748 GCGTGGATCTGGAGAGGTG 59.857 63.158 0.00 0.00 0.00 4.00
716 724 0.107456 CTGAATAGGGCGGATGCTGT 59.893 55.000 0.00 0.00 42.25 4.40
732 740 1.228245 GGTTTGGTGCTGAGCCTGA 60.228 57.895 0.23 0.00 0.00 3.86
735 749 3.365265 CGGGTTTGGTGCTGAGCC 61.365 66.667 0.23 0.00 0.00 4.70
736 750 2.281484 TCGGGTTTGGTGCTGAGC 60.281 61.111 0.00 0.00 0.00 4.26
737 751 0.951040 GACTCGGGTTTGGTGCTGAG 60.951 60.000 0.00 0.00 0.00 3.35
738 752 1.070786 GACTCGGGTTTGGTGCTGA 59.929 57.895 0.00 0.00 0.00 4.26
739 753 2.317609 CGACTCGGGTTTGGTGCTG 61.318 63.158 0.00 0.00 0.00 4.41
740 754 2.030562 CGACTCGGGTTTGGTGCT 59.969 61.111 0.00 0.00 0.00 4.40
741 755 2.280592 ACGACTCGGGTTTGGTGC 60.281 61.111 2.98 0.00 0.00 5.01
742 756 1.666872 GGACGACTCGGGTTTGGTG 60.667 63.158 2.98 0.00 0.00 4.17
743 757 2.135581 TGGACGACTCGGGTTTGGT 61.136 57.895 2.98 0.00 0.00 3.67
744 758 1.666872 GTGGACGACTCGGGTTTGG 60.667 63.158 2.98 0.00 0.00 3.28
745 759 1.068417 TGTGGACGACTCGGGTTTG 59.932 57.895 2.98 0.00 0.00 2.93
746 760 1.068585 GTGTGGACGACTCGGGTTT 59.931 57.895 2.98 0.00 0.00 3.27
779 793 1.663702 CGCCTCTTTCGGTTCGTGT 60.664 57.895 0.00 0.00 0.00 4.49
781 795 0.249573 TTTCGCCTCTTTCGGTTCGT 60.250 50.000 0.00 0.00 0.00 3.85
782 796 0.438830 CTTTCGCCTCTTTCGGTTCG 59.561 55.000 0.00 0.00 0.00 3.95
783 797 0.166161 GCTTTCGCCTCTTTCGGTTC 59.834 55.000 0.00 0.00 0.00 3.62
785 799 0.534203 TTGCTTTCGCCTCTTTCGGT 60.534 50.000 0.00 0.00 34.43 4.69
788 802 2.054363 GCTTTTGCTTTCGCCTCTTTC 58.946 47.619 0.00 0.00 43.35 2.62
887 910 1.710013 GATCAAGGCACGACGAAAGA 58.290 50.000 0.00 0.00 0.00 2.52
902 925 2.584261 GAAGCAGCTGGCCTCGATCA 62.584 60.000 17.12 0.00 46.50 2.92
912 935 2.894387 GCCGGCTAGAAGCAGCTG 60.894 66.667 22.15 10.11 44.75 4.24
922 945 0.185175 TCTATCTGTCAGGCCGGCTA 59.815 55.000 28.56 9.71 0.00 3.93
931 954 3.372440 TGGCTCACTCTCTATCTGTCA 57.628 47.619 0.00 0.00 0.00 3.58
933 956 2.430332 GCTTGGCTCACTCTCTATCTGT 59.570 50.000 0.00 0.00 0.00 3.41
1156 1198 1.873591 GAAGAAGAAAACAGAGCGGCA 59.126 47.619 1.45 0.00 0.00 5.69
1158 1200 4.820284 AAAGAAGAAGAAAACAGAGCGG 57.180 40.909 0.00 0.00 0.00 5.52
1202 1247 1.900486 GTAAGCCTATGCCTATCCGGT 59.100 52.381 0.00 0.00 38.69 5.28
1203 1248 1.135083 CGTAAGCCTATGCCTATCCGG 60.135 57.143 0.00 0.00 38.69 5.14
1265 1310 8.095169 GGTGGGTATCGAATAATTATCTCTGTT 58.905 37.037 0.00 0.00 0.00 3.16
1384 1437 3.272574 AGCACAGTGAATCAATCGGAT 57.727 42.857 4.15 0.00 38.05 4.18
1416 1469 9.223291 AGATACTACTACCTCTGTTCCTAACTA 57.777 37.037 0.00 0.00 0.00 2.24
1418 1471 9.492973 CTAGATACTACTACCTCTGTTCCTAAC 57.507 40.741 0.00 0.00 0.00 2.34
1517 1614 0.942962 GCAGGGCAATCGAGATTCAG 59.057 55.000 0.00 0.00 0.00 3.02
1538 1635 4.623932 TTGACAAGGAACATGAGCTAGT 57.376 40.909 0.00 0.00 0.00 2.57
1566 1663 4.462508 TTCTGATCTACAAGTGCCAGAG 57.537 45.455 0.00 0.00 33.02 3.35
1588 1685 7.789349 ACTGCTATTTTATGGGGTCCAATTAAT 59.211 33.333 0.00 0.00 36.95 1.40
1612 1713 7.164122 TCTTATCATTGCTTTGAAGTCTCACT 58.836 34.615 0.00 0.00 0.00 3.41
1628 1729 5.748402 TGTGCTCTGTCCAATCTTATCATT 58.252 37.500 0.00 0.00 0.00 2.57
1666 1767 6.739331 TTCAAGTACCCAACCATTCAAAAT 57.261 33.333 0.00 0.00 0.00 1.82
1668 1769 8.310382 CAATATTCAAGTACCCAACCATTCAAA 58.690 33.333 0.00 0.00 0.00 2.69
1681 1782 3.947834 ACAGCAGGCCAATATTCAAGTAC 59.052 43.478 5.01 0.00 0.00 2.73
1732 1833 8.641155 GGGAATAACAACGCAATTAAGTTAAAC 58.359 33.333 0.00 0.00 0.00 2.01
1778 2074 5.159209 CCTGCATTTTAGAGCACAAGAAAG 58.841 41.667 0.00 0.00 36.62 2.62
1925 2227 8.699283 AATTAACCGATCTGTGTTTCTAGTAC 57.301 34.615 0.00 0.00 0.00 2.73
1960 2262 2.757099 GGCTGCCAGGGTGGATTG 60.757 66.667 15.17 0.00 40.96 2.67
2194 2496 1.097547 AATGCTGTAGACGCCATGGC 61.098 55.000 27.67 27.67 37.85 4.40
2195 2497 1.064505 CAAATGCTGTAGACGCCATGG 59.935 52.381 7.63 7.63 0.00 3.66
2196 2498 1.532505 GCAAATGCTGTAGACGCCATG 60.533 52.381 0.00 0.00 38.21 3.66
2197 2499 0.734889 GCAAATGCTGTAGACGCCAT 59.265 50.000 0.00 0.00 38.21 4.40
2198 2500 0.605050 TGCAAATGCTGTAGACGCCA 60.605 50.000 6.97 0.00 42.66 5.69
2199 2501 0.097674 CTGCAAATGCTGTAGACGCC 59.902 55.000 6.97 0.00 40.00 5.68
2200 2502 1.061711 CTCTGCAAATGCTGTAGACGC 59.938 52.381 6.97 0.00 41.35 5.19
2201 2503 2.341257 ACTCTGCAAATGCTGTAGACG 58.659 47.619 6.97 0.00 41.35 4.18
2202 2504 5.814705 AGAATACTCTGCAAATGCTGTAGAC 59.185 40.000 6.97 6.13 41.35 2.59
2203 2505 5.982356 AGAATACTCTGCAAATGCTGTAGA 58.018 37.500 6.97 0.69 43.68 2.59
2204 2506 6.238320 GGAAGAATACTCTGCAAATGCTGTAG 60.238 42.308 6.97 8.14 42.66 2.74
2205 2507 5.586243 GGAAGAATACTCTGCAAATGCTGTA 59.414 40.000 6.97 7.70 42.66 2.74
2206 2508 4.397417 GGAAGAATACTCTGCAAATGCTGT 59.603 41.667 6.97 5.86 42.66 4.40
2207 2509 4.639310 AGGAAGAATACTCTGCAAATGCTG 59.361 41.667 6.97 6.45 42.66 4.41
2222 2533 1.153549 GCCGACTCGCAGGAAGAAT 60.154 57.895 0.00 0.00 0.00 2.40
2230 2541 0.812549 TACACATTAGCCGACTCGCA 59.187 50.000 0.00 0.00 0.00 5.10
2234 2545 2.453521 TGGAGTACACATTAGCCGACT 58.546 47.619 0.00 0.00 0.00 4.18
2235 2546 2.953466 TGGAGTACACATTAGCCGAC 57.047 50.000 0.00 0.00 0.00 4.79
2252 2563 2.889045 CCCAAATATCCACTGCAGATGG 59.111 50.000 23.35 22.63 38.71 3.51
2253 2564 3.559069 ACCCAAATATCCACTGCAGATG 58.441 45.455 23.35 14.55 0.00 2.90
2340 2657 1.068055 GTAGACGAAGAGCCCGAACAA 60.068 52.381 0.00 0.00 0.00 2.83
2456 2773 1.070786 GAGGGCCGTGAAGTTGACA 59.929 57.895 0.65 0.00 0.00 3.58
2522 2839 2.575893 TTCGTCCACCTTAGCCGCA 61.576 57.895 0.00 0.00 0.00 5.69
2537 2854 0.038159 GAGCATATCCCTCCGGTTCG 60.038 60.000 0.00 0.00 0.00 3.95
2540 2857 4.217112 GGAGCATATCCCTCCGGT 57.783 61.111 0.00 0.00 43.01 5.28
2564 2881 3.296854 AGGATGCTACTAACCGATGACA 58.703 45.455 0.00 0.00 0.00 3.58
2617 2937 1.410737 CGCGGTGTGTTATCTGGACG 61.411 60.000 0.00 0.00 0.00 4.79
2689 3015 0.992072 CGGTTCAGCTGATACACACG 59.008 55.000 19.04 13.91 0.00 4.49
2734 3060 8.859236 ATATCATGATCATTCAAAGGTACCAG 57.141 34.615 15.94 3.52 34.96 4.00
2765 3091 8.575589 GCATGTTCCCCTTTTCAAAATAAAAAT 58.424 29.630 0.00 0.00 0.00 1.82
2766 3092 7.013750 GGCATGTTCCCCTTTTCAAAATAAAAA 59.986 33.333 0.00 0.00 0.00 1.94
2767 3093 6.488344 GGCATGTTCCCCTTTTCAAAATAAAA 59.512 34.615 0.00 0.00 0.00 1.52
2768 3094 6.000840 GGCATGTTCCCCTTTTCAAAATAAA 58.999 36.000 0.00 0.00 0.00 1.40
2769 3095 5.309282 AGGCATGTTCCCCTTTTCAAAATAA 59.691 36.000 0.00 0.00 0.00 1.40
2770 3096 4.843516 AGGCATGTTCCCCTTTTCAAAATA 59.156 37.500 0.00 0.00 0.00 1.40
2771 3097 3.652387 AGGCATGTTCCCCTTTTCAAAAT 59.348 39.130 0.00 0.00 0.00 1.82
2783 3109 1.028868 GCAGAGGTCAGGCATGTTCC 61.029 60.000 0.00 2.70 0.00 3.62
2785 3111 0.111061 TTGCAGAGGTCAGGCATGTT 59.889 50.000 0.00 0.00 37.39 2.71
2790 3117 0.250467 TTCTGTTGCAGAGGTCAGGC 60.250 55.000 0.00 0.00 41.75 4.85
2795 3122 2.089980 GCATCATTCTGTTGCAGAGGT 58.910 47.619 5.53 0.00 41.75 3.85
2804 3131 3.541996 TGGTCGTATGCATCATTCTGT 57.458 42.857 0.19 0.00 0.00 3.41
2859 3186 3.452474 GCTGTGAGCTGTACTGGATTAG 58.548 50.000 0.00 0.00 38.45 1.73
2860 3187 2.159240 CGCTGTGAGCTGTACTGGATTA 60.159 50.000 0.00 0.00 39.60 1.75
2881 3208 2.783135 TCATGTTTGAGTCTTGCTCCC 58.217 47.619 0.00 0.00 43.48 4.30
2908 3235 4.311606 GGTTGTGGCATTCCGTTATTTTT 58.688 39.130 0.00 0.00 34.14 1.94
2917 3245 1.200020 CTTTCTCGGTTGTGGCATTCC 59.800 52.381 0.00 0.00 0.00 3.01
2921 3249 2.354704 CCTATCTTTCTCGGTTGTGGCA 60.355 50.000 0.00 0.00 0.00 4.92
2937 3265 8.240267 AGGTGTTTAGTCATCTTAGTCCTATC 57.760 38.462 0.00 0.00 0.00 2.08
2975 3304 0.253610 AACCGGTTTGGATGGCGATA 59.746 50.000 15.86 0.00 42.00 2.92
2977 3306 0.253610 ATAACCGGTTTGGATGGCGA 59.746 50.000 27.64 3.77 42.00 5.54
2995 3328 4.768448 TCGACGGTAACATGGGATATGTAT 59.232 41.667 0.00 0.00 0.00 2.29
2998 3331 3.653539 TCGACGGTAACATGGGATATG 57.346 47.619 0.00 0.00 0.00 1.78
3009 3344 2.029200 TGCAACCAGTAATCGACGGTAA 60.029 45.455 0.00 0.00 34.97 2.85
3048 3383 1.379443 ATCTGTACGGTCTGCGGGA 60.379 57.895 0.64 0.00 0.00 5.14
3051 3386 0.172578 TTGGATCTGTACGGTCTGCG 59.827 55.000 0.64 0.00 0.00 5.18
3056 3391 2.427453 CTGCTACTTGGATCTGTACGGT 59.573 50.000 0.64 0.00 0.00 4.83
3063 3419 2.744760 TCAGAGCTGCTACTTGGATCT 58.255 47.619 0.15 0.00 0.00 2.75
3075 3431 2.696506 TGCAGATTGTCTTCAGAGCTG 58.303 47.619 0.00 0.00 0.00 4.24
3178 3548 2.443255 CTGGGGTGGAGCCTATTAATGT 59.557 50.000 0.00 0.00 37.43 2.71
3247 3617 5.120830 GGCACACGATTCATATAGCCTTTAG 59.879 44.000 0.00 0.00 37.89 1.85
3384 3754 5.560722 TCCACAAGGAAGTGATTCTTACA 57.439 39.130 0.00 0.00 42.23 2.41
3426 3796 7.834181 TCATCAAGCCATATCATGATCATTCAT 59.166 33.333 12.53 3.85 43.51 2.57
3427 3797 7.172342 TCATCAAGCCATATCATGATCATTCA 58.828 34.615 12.53 0.00 36.00 2.57
3428 3798 7.337184 ACTCATCAAGCCATATCATGATCATTC 59.663 37.037 12.53 0.79 30.39 2.67
3429 3799 7.175797 ACTCATCAAGCCATATCATGATCATT 58.824 34.615 12.53 0.00 30.39 2.57
3430 3800 6.722328 ACTCATCAAGCCATATCATGATCAT 58.278 36.000 12.53 1.18 30.39 2.45
3431 3801 6.123045 ACTCATCAAGCCATATCATGATCA 57.877 37.500 12.53 0.00 30.39 2.92
3432 3802 6.653740 TCAACTCATCAAGCCATATCATGATC 59.346 38.462 12.53 0.00 30.39 2.92
3433 3803 6.540083 TCAACTCATCAAGCCATATCATGAT 58.460 36.000 13.81 13.81 32.94 2.45
3434 3804 5.932455 TCAACTCATCAAGCCATATCATGA 58.068 37.500 0.00 0.00 0.00 3.07
3435 3805 6.819397 ATCAACTCATCAAGCCATATCATG 57.181 37.500 0.00 0.00 0.00 3.07
3436 3806 6.776116 ACAATCAACTCATCAAGCCATATCAT 59.224 34.615 0.00 0.00 0.00 2.45
3437 3807 6.124340 ACAATCAACTCATCAAGCCATATCA 58.876 36.000 0.00 0.00 0.00 2.15
3438 3808 6.630444 ACAATCAACTCATCAAGCCATATC 57.370 37.500 0.00 0.00 0.00 1.63
3439 3809 7.414222 AAACAATCAACTCATCAAGCCATAT 57.586 32.000 0.00 0.00 0.00 1.78
3440 3810 6.839124 AAACAATCAACTCATCAAGCCATA 57.161 33.333 0.00 0.00 0.00 2.74
3441 3811 5.733620 AAACAATCAACTCATCAAGCCAT 57.266 34.783 0.00 0.00 0.00 4.40
3442 3812 5.534207 AAAACAATCAACTCATCAAGCCA 57.466 34.783 0.00 0.00 0.00 4.75
3443 3813 9.638239 TTATAAAAACAATCAACTCATCAAGCC 57.362 29.630 0.00 0.00 0.00 4.35
3450 3820 9.672086 CGTCCTTTTATAAAAACAATCAACTCA 57.328 29.630 11.62 0.00 0.00 3.41
3451 3821 9.673454 ACGTCCTTTTATAAAAACAATCAACTC 57.327 29.630 11.62 0.00 0.00 3.01
3462 3832 9.810231 GTCGACATAAAACGTCCTTTTATAAAA 57.190 29.630 11.55 10.16 41.33 1.52
3463 3833 9.206870 AGTCGACATAAAACGTCCTTTTATAAA 57.793 29.630 19.50 0.00 41.33 1.40
3464 3834 8.761575 AGTCGACATAAAACGTCCTTTTATAA 57.238 30.769 19.50 0.00 41.33 0.98
3465 3835 8.028354 TGAGTCGACATAAAACGTCCTTTTATA 58.972 33.333 19.50 0.00 41.33 0.98
3466 3836 6.869913 TGAGTCGACATAAAACGTCCTTTTAT 59.130 34.615 19.50 0.00 43.20 1.40
3467 3837 6.215121 TGAGTCGACATAAAACGTCCTTTTA 58.785 36.000 19.50 0.00 38.44 1.52
3468 3838 5.051816 TGAGTCGACATAAAACGTCCTTTT 58.948 37.500 19.50 0.00 36.06 2.27
3469 3839 4.624015 TGAGTCGACATAAAACGTCCTTT 58.376 39.130 19.50 0.00 0.00 3.11
3470 3840 4.247267 TGAGTCGACATAAAACGTCCTT 57.753 40.909 19.50 0.00 0.00 3.36
3471 3841 3.928727 TGAGTCGACATAAAACGTCCT 57.071 42.857 19.50 0.00 0.00 3.85
3472 3842 6.255020 ACATTATGAGTCGACATAAAACGTCC 59.745 38.462 19.50 0.00 43.05 4.79
3473 3843 7.218145 ACATTATGAGTCGACATAAAACGTC 57.782 36.000 19.50 4.23 43.05 4.34
3474 3844 7.043590 GCTACATTATGAGTCGACATAAAACGT 60.044 37.037 19.50 13.66 43.05 3.99
3475 3845 7.043656 TGCTACATTATGAGTCGACATAAAACG 60.044 37.037 19.50 9.25 43.05 3.60
3476 3846 8.126871 TGCTACATTATGAGTCGACATAAAAC 57.873 34.615 19.50 2.47 43.05 2.43
3477 3847 8.710835 TTGCTACATTATGAGTCGACATAAAA 57.289 30.769 19.50 7.09 43.05 1.52
3478 3848 8.600625 GTTTGCTACATTATGAGTCGACATAAA 58.399 33.333 19.50 6.71 43.05 1.40
3479 3849 7.762159 TGTTTGCTACATTATGAGTCGACATAA 59.238 33.333 19.50 13.94 43.64 1.90
3480 3850 7.262048 TGTTTGCTACATTATGAGTCGACATA 58.738 34.615 19.50 6.26 0.00 2.29
3481 3851 6.106003 TGTTTGCTACATTATGAGTCGACAT 58.894 36.000 19.50 6.02 0.00 3.06
3482 3852 5.474825 TGTTTGCTACATTATGAGTCGACA 58.525 37.500 19.50 0.00 0.00 4.35
3483 3853 6.589830 ATGTTTGCTACATTATGAGTCGAC 57.410 37.500 7.70 7.70 45.19 4.20
3507 3877 9.838975 TGTGTGCTAATTGTATTTGTATCTTTG 57.161 29.630 0.00 0.00 0.00 2.77
3511 3881 9.289303 CCTTTGTGTGCTAATTGTATTTGTATC 57.711 33.333 0.00 0.00 0.00 2.24
3512 3882 8.250332 CCCTTTGTGTGCTAATTGTATTTGTAT 58.750 33.333 0.00 0.00 0.00 2.29
3513 3883 7.598278 CCCTTTGTGTGCTAATTGTATTTGTA 58.402 34.615 0.00 0.00 0.00 2.41
3514 3884 6.454795 CCCTTTGTGTGCTAATTGTATTTGT 58.545 36.000 0.00 0.00 0.00 2.83
3515 3885 5.348451 GCCCTTTGTGTGCTAATTGTATTTG 59.652 40.000 0.00 0.00 0.00 2.32
3516 3886 5.011533 TGCCCTTTGTGTGCTAATTGTATTT 59.988 36.000 0.00 0.00 0.00 1.40
3517 3887 4.526262 TGCCCTTTGTGTGCTAATTGTATT 59.474 37.500 0.00 0.00 0.00 1.89
3518 3888 4.085733 TGCCCTTTGTGTGCTAATTGTAT 58.914 39.130 0.00 0.00 0.00 2.29
3519 3889 3.491342 TGCCCTTTGTGTGCTAATTGTA 58.509 40.909 0.00 0.00 0.00 2.41
3520 3890 2.315176 TGCCCTTTGTGTGCTAATTGT 58.685 42.857 0.00 0.00 0.00 2.71
3521 3891 3.598019 ATGCCCTTTGTGTGCTAATTG 57.402 42.857 0.00 0.00 0.00 2.32
3522 3892 4.711355 ACATATGCCCTTTGTGTGCTAATT 59.289 37.500 1.58 0.00 0.00 1.40
3523 3893 4.280819 ACATATGCCCTTTGTGTGCTAAT 58.719 39.130 1.58 0.00 0.00 1.73
3524 3894 3.696045 ACATATGCCCTTTGTGTGCTAA 58.304 40.909 1.58 0.00 0.00 3.09
3525 3895 3.364460 ACATATGCCCTTTGTGTGCTA 57.636 42.857 1.58 0.00 0.00 3.49
3526 3896 2.220653 ACATATGCCCTTTGTGTGCT 57.779 45.000 1.58 0.00 0.00 4.40
3527 3897 3.631686 TCATACATATGCCCTTTGTGTGC 59.368 43.478 1.58 0.00 33.91 4.57
3528 3898 6.395426 AATCATACATATGCCCTTTGTGTG 57.605 37.500 1.58 0.00 34.83 3.82
3529 3899 6.716628 CCTAATCATACATATGCCCTTTGTGT 59.283 38.462 1.58 0.00 33.76 3.72
3530 3900 6.942005 TCCTAATCATACATATGCCCTTTGTG 59.058 38.462 1.58 0.00 33.76 3.33
3531 3901 7.090319 TCCTAATCATACATATGCCCTTTGT 57.910 36.000 1.58 0.00 33.76 2.83
3532 3902 7.415989 GCATCCTAATCATACATATGCCCTTTG 60.416 40.741 1.58 0.00 33.78 2.77
3533 3903 6.604795 GCATCCTAATCATACATATGCCCTTT 59.395 38.462 1.58 0.00 33.78 3.11
3534 3904 6.125029 GCATCCTAATCATACATATGCCCTT 58.875 40.000 1.58 0.00 33.78 3.95
3535 3905 5.192321 TGCATCCTAATCATACATATGCCCT 59.808 40.000 1.58 0.00 37.93 5.19
3536 3906 5.297776 GTGCATCCTAATCATACATATGCCC 59.702 44.000 1.58 0.00 37.93 5.36
3537 3907 5.882000 TGTGCATCCTAATCATACATATGCC 59.118 40.000 1.58 0.00 37.93 4.40
3538 3908 6.990341 TGTGCATCCTAATCATACATATGC 57.010 37.500 1.58 0.00 38.90 3.14
3539 3909 8.395633 CACATGTGCATCCTAATCATACATATG 58.604 37.037 13.94 0.00 33.19 1.78
3540 3910 8.502105 CACATGTGCATCCTAATCATACATAT 57.498 34.615 13.94 0.00 0.00 1.78
3541 3911 7.910441 CACATGTGCATCCTAATCATACATA 57.090 36.000 13.94 0.00 0.00 2.29
3542 3912 6.812879 CACATGTGCATCCTAATCATACAT 57.187 37.500 13.94 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.