Multiple sequence alignment - TraesCS2B01G373800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G373800 chr2B 100.000 3029 0 0 1 3029 532477909 532474881 0.000000e+00 5594.0
1 TraesCS2B01G373800 chr2D 97.536 1826 35 5 622 2442 452558349 452556529 0.000000e+00 3114.0
2 TraesCS2B01G373800 chr2D 88.273 469 37 4 124 590 452588317 452587865 2.050000e-151 545.0
3 TraesCS2B01G373800 chr2D 93.987 316 13 2 2439 2748 452556369 452556054 9.830000e-130 473.0
4 TraesCS2B01G373800 chr2D 83.846 130 14 6 1828 1953 453620481 453620355 1.910000e-22 117.0
5 TraesCS2B01G373800 chr2D 100.000 28 0 0 755 782 453614267 453614240 5.000000e-03 52.8
6 TraesCS2B01G373800 chr2A 92.437 1851 67 24 124 1971 596528411 596530191 0.000000e+00 2575.0
7 TraesCS2B01G373800 chr2A 100.000 30 0 0 2888 2917 148597489 148597518 4.220000e-04 56.5
8 TraesCS2B01G373800 chr2A 100.000 28 0 0 755 782 596148527 596148500 5.000000e-03 52.8
9 TraesCS2B01G373800 chr2A 100.000 28 0 0 755 782 596379800 596379773 5.000000e-03 52.8
10 TraesCS2B01G373800 chr1D 94.949 99 2 3 27 123 343351731 343351828 5.230000e-33 152.0
11 TraesCS2B01G373800 chr1A 88.288 111 10 3 14 123 443128465 443128573 2.450000e-26 130.0
12 TraesCS2B01G373800 chr3D 100.000 30 0 0 2888 2917 272935555 272935584 4.220000e-04 56.5
13 TraesCS2B01G373800 chr3A 100.000 30 0 0 2888 2917 356085626 356085655 4.220000e-04 56.5
14 TraesCS2B01G373800 chr6B 100.000 28 0 0 2893 2920 507368810 507368783 5.000000e-03 52.8
15 TraesCS2B01G373800 chr4D 100.000 28 0 0 2893 2920 382483101 382483074 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G373800 chr2B 532474881 532477909 3028 True 5594.0 5594 100.0000 1 3029 1 chr2B.!!$R1 3028
1 TraesCS2B01G373800 chr2D 452556054 452558349 2295 True 1793.5 3114 95.7615 622 2748 2 chr2D.!!$R4 2126
2 TraesCS2B01G373800 chr2A 596528411 596530191 1780 False 2575.0 2575 92.4370 124 1971 1 chr2A.!!$F2 1847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.106918 TGAGGTCCACCAAACACCAC 60.107 55.000 0.00 0.0 38.89 4.16 F
229 230 0.261696 AAACCCCATATCTGCCCACC 59.738 55.000 0.00 0.0 0.00 4.61 F
269 270 0.937441 TAGGCAGGACTCAGATCCCT 59.063 55.000 0.00 0.0 39.91 4.20 F
567 569 1.228063 CTGCTTCCCTGTGCACAGT 60.228 57.895 37.55 0.0 42.27 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 1527 0.796312 ATGTGGTCGTCAATGAACGC 59.204 50.0 0.00 0.0 42.31 4.84 R
2004 2010 1.110442 AGCGAACCCATGAGAGAGAG 58.890 55.0 0.00 0.0 0.00 3.20 R
2005 2011 2.427453 GTTAGCGAACCCATGAGAGAGA 59.573 50.0 0.00 0.0 0.00 3.10 R
2516 2688 0.036010 CTCGACAAAGGTCTGGCCAT 60.036 55.0 5.51 0.0 42.05 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 3.119096 GTTCTGCGGGGCGTTCTC 61.119 66.667 0.00 0.00 0.00 2.87
65 66 3.311110 TTCTGCGGGGCGTTCTCT 61.311 61.111 0.00 0.00 0.00 3.10
66 67 3.589654 TTCTGCGGGGCGTTCTCTG 62.590 63.158 0.00 0.00 0.00 3.35
70 71 4.760047 CGGGGCGTTCTCTGGTGG 62.760 72.222 0.00 0.00 0.00 4.61
71 72 3.319198 GGGGCGTTCTCTGGTGGA 61.319 66.667 0.00 0.00 0.00 4.02
72 73 2.266055 GGGCGTTCTCTGGTGGAG 59.734 66.667 0.00 0.00 43.12 3.86
73 74 2.266055 GGCGTTCTCTGGTGGAGG 59.734 66.667 0.00 0.00 42.10 4.30
74 75 2.266055 GCGTTCTCTGGTGGAGGG 59.734 66.667 0.00 0.00 42.10 4.30
75 76 2.283529 GCGTTCTCTGGTGGAGGGA 61.284 63.158 0.00 0.00 42.10 4.20
76 77 1.893786 CGTTCTCTGGTGGAGGGAG 59.106 63.158 0.00 0.00 42.10 4.30
77 78 1.608717 CGTTCTCTGGTGGAGGGAGG 61.609 65.000 0.00 0.00 42.10 4.30
78 79 1.613630 TTCTCTGGTGGAGGGAGGC 60.614 63.158 0.00 0.00 42.10 4.70
79 80 2.040278 CTCTGGTGGAGGGAGGCT 59.960 66.667 0.00 0.00 38.35 4.58
80 81 2.039624 TCTGGTGGAGGGAGGCTC 59.960 66.667 5.78 5.78 0.00 4.70
81 82 3.465403 CTGGTGGAGGGAGGCTCG 61.465 72.222 8.69 0.00 0.00 5.03
95 96 3.893763 CTCGCTCCCGCTCGTCAT 61.894 66.667 0.00 0.00 0.00 3.06
96 97 4.193334 TCGCTCCCGCTCGTCATG 62.193 66.667 0.00 0.00 0.00 3.07
99 100 4.147449 CTCCCGCTCGTCATGGCA 62.147 66.667 0.00 0.00 0.00 4.92
100 101 4.147449 TCCCGCTCGTCATGGCAG 62.147 66.667 0.00 0.00 0.00 4.85
104 105 2.515523 GCTCGTCATGGCAGCCAT 60.516 61.111 22.36 22.36 46.37 4.40
118 119 4.511246 CCATGGCGCCTGGTGGAT 62.511 66.667 30.12 13.59 33.53 3.41
119 120 2.440796 CATGGCGCCTGGTGGATT 60.441 61.111 29.70 0.00 34.57 3.01
120 121 2.124151 ATGGCGCCTGGTGGATTC 60.124 61.111 29.70 0.00 34.57 2.52
121 122 2.982643 ATGGCGCCTGGTGGATTCA 61.983 57.895 29.70 2.45 34.57 2.57
122 123 2.825836 GGCGCCTGGTGGATTCAG 60.826 66.667 22.15 0.00 34.57 3.02
148 149 0.106918 TGAGGTCCACCAAACACCAC 60.107 55.000 0.00 0.00 38.89 4.16
169 170 1.229428 CTGCAACACATTCACCTCGT 58.771 50.000 0.00 0.00 0.00 4.18
177 178 1.336887 ACATTCACCTCGTCGACAAGG 60.337 52.381 21.14 21.14 38.70 3.61
195 196 2.263852 GGTCCGACCTCCGTTTCC 59.736 66.667 10.59 0.00 34.73 3.13
228 229 1.756538 CAAAACCCCATATCTGCCCAC 59.243 52.381 0.00 0.00 0.00 4.61
229 230 0.261696 AAACCCCATATCTGCCCACC 59.738 55.000 0.00 0.00 0.00 4.61
230 231 1.994885 AACCCCATATCTGCCCACCG 61.995 60.000 0.00 0.00 0.00 4.94
231 232 2.281761 CCCATATCTGCCCACCGC 60.282 66.667 0.00 0.00 38.31 5.68
233 234 1.893808 CCATATCTGCCCACCGCAC 60.894 63.158 0.00 0.00 44.64 5.34
234 235 1.893808 CATATCTGCCCACCGCACC 60.894 63.158 0.00 0.00 44.64 5.01
235 236 2.374525 ATATCTGCCCACCGCACCA 61.375 57.895 0.00 0.00 44.64 4.17
236 237 2.608970 ATATCTGCCCACCGCACCAC 62.609 60.000 0.00 0.00 44.64 4.16
244 245 4.722700 ACCGCACCACATCAGGGC 62.723 66.667 0.00 0.00 0.00 5.19
269 270 0.937441 TAGGCAGGACTCAGATCCCT 59.063 55.000 0.00 0.00 39.91 4.20
270 271 0.937441 AGGCAGGACTCAGATCCCTA 59.063 55.000 0.00 0.00 39.91 3.53
305 307 2.360350 CCAGAGCCGCAACCATGT 60.360 61.111 0.00 0.00 0.00 3.21
328 330 4.803426 CTCGCCTGGAGTCACCGC 62.803 72.222 0.00 0.00 42.61 5.68
394 396 3.439540 GATCCGCAGCCCGCAAAA 61.440 61.111 0.00 0.00 42.60 2.44
425 427 2.352805 CCAGCCTGTTCCTCCACC 59.647 66.667 0.00 0.00 0.00 4.61
431 433 1.745890 CTGTTCCTCCACCGTCACA 59.254 57.895 0.00 0.00 0.00 3.58
481 483 3.286751 GTCGCCCAACAGCTTGCA 61.287 61.111 0.00 0.00 0.00 4.08
495 497 1.789078 CTTGCACTTCAGCACGGCTT 61.789 55.000 0.00 0.00 45.61 4.35
544 546 4.007644 CACTGCAGGCCACTCCGA 62.008 66.667 19.93 0.00 40.77 4.55
545 547 3.005539 ACTGCAGGCCACTCCGAT 61.006 61.111 19.93 0.00 40.77 4.18
546 548 2.202987 CTGCAGGCCACTCCGATC 60.203 66.667 5.01 0.00 40.77 3.69
547 549 3.746949 CTGCAGGCCACTCCGATCC 62.747 68.421 5.01 0.00 40.77 3.36
567 569 1.228063 CTGCTTCCCTGTGCACAGT 60.228 57.895 37.55 0.00 42.27 3.55
600 602 3.181967 GACGTGCAGCAGCCGTAG 61.182 66.667 15.27 0.18 43.98 3.51
604 606 4.312941 TGCAGCAGCCGTAGCACA 62.313 61.111 0.00 0.00 43.56 4.57
605 607 3.793144 GCAGCAGCCGTAGCACAC 61.793 66.667 0.00 0.00 43.56 3.82
613 615 2.809601 CGTAGCACACGCCTCCAC 60.810 66.667 0.00 0.00 45.03 4.02
614 616 2.809601 GTAGCACACGCCTCCACG 60.810 66.667 0.00 0.00 39.83 4.94
615 617 2.986979 TAGCACACGCCTCCACGA 60.987 61.111 0.00 0.00 39.83 4.35
616 618 3.277211 TAGCACACGCCTCCACGAC 62.277 63.158 0.00 0.00 39.83 4.34
617 619 4.961511 GCACACGCCTCCACGACA 62.962 66.667 0.00 0.00 36.70 4.35
618 620 3.036084 CACACGCCTCCACGACAC 61.036 66.667 0.00 0.00 36.70 3.67
619 621 4.295119 ACACGCCTCCACGACACC 62.295 66.667 0.00 0.00 36.70 4.16
907 911 6.485648 CCAGATCATTGATGTGCTTCTAATCA 59.514 38.462 16.30 0.00 32.88 2.57
1387 1393 5.324409 TGGAAAAGATCACAAGGTTAGCAT 58.676 37.500 0.00 0.00 0.00 3.79
1407 1413 4.702131 GCATACCAAAGAAGATGTTCAGGT 59.298 41.667 15.33 15.33 37.91 4.00
1521 1527 1.817099 GGCAGATGGAGGCTTGTCG 60.817 63.158 0.00 0.00 0.00 4.35
1733 1739 4.003648 ACGGTGATGAATTCTTGAAGGAC 58.996 43.478 7.05 0.00 0.00 3.85
1914 1920 5.856126 TTACTTGTTGCTTGTTATCTCCG 57.144 39.130 0.00 0.00 0.00 4.63
2004 2010 6.358118 TGCATAAGGTGTGAATCGTATTTC 57.642 37.500 0.00 0.00 0.00 2.17
2005 2011 6.112734 TGCATAAGGTGTGAATCGTATTTCT 58.887 36.000 0.00 0.00 0.00 2.52
2006 2012 6.257849 TGCATAAGGTGTGAATCGTATTTCTC 59.742 38.462 0.00 0.00 0.00 2.87
2164 2170 8.413229 CCCAAAATTTCAAAAGAAGAGAGTGTA 58.587 33.333 0.00 0.00 0.00 2.90
2206 2215 6.276847 ACATCAGTAAAGCCTCTATTTCTCG 58.723 40.000 0.00 0.00 0.00 4.04
2209 2218 6.793349 TCAGTAAAGCCTCTATTTCTCGTAC 58.207 40.000 0.00 0.00 0.00 3.67
2233 2242 6.267471 ACAGATAGATTTTGCTTGTTTTGGGA 59.733 34.615 0.00 0.00 0.00 4.37
2243 2252 3.802329 GCTTGTTTTGGGAAGTTTAGGCC 60.802 47.826 0.00 0.00 0.00 5.19
2283 2292 1.298563 CACTAATGCAATGGCCGCG 60.299 57.895 0.00 0.00 40.13 6.46
2348 2357 3.747010 TCGGCATTTCGTTTGCTAAGTTA 59.253 39.130 6.87 0.00 40.03 2.24
2353 2362 6.183359 GGCATTTCGTTTGCTAAGTTATGTTG 60.183 38.462 6.87 0.00 40.03 3.33
2516 2688 7.201902 GGAATGACTGTTTAATGGGCATTCATA 60.202 37.037 21.82 0.00 40.91 2.15
2540 2712 1.344763 CCAGACCTTTGTCGAGTCCTT 59.655 52.381 0.00 0.00 46.51 3.36
2555 2733 0.395312 TCCTTGTCCGACCAAACTCC 59.605 55.000 0.00 0.00 0.00 3.85
2562 2740 1.597027 CGACCAAACTCCGCAACCT 60.597 57.895 0.00 0.00 0.00 3.50
2611 2789 3.680789 CACGTCCTTTTGTTGAGTTGTC 58.319 45.455 0.00 0.00 0.00 3.18
2652 2830 3.740115 AGCTTTGACGAGTGTGGTATTT 58.260 40.909 0.00 0.00 0.00 1.40
2659 2837 1.654105 CGAGTGTGGTATTTCGCAGAC 59.346 52.381 0.00 0.00 34.32 3.51
2724 2902 3.815401 AGTTTTGGTCCGATGAAACTCTG 59.185 43.478 6.65 0.00 37.70 3.35
2730 2908 4.130118 GGTCCGATGAAACTCTGCAATAT 58.870 43.478 0.00 0.00 0.00 1.28
2744 2922 5.718146 TCTGCAATATGAGTAGATGCTAGC 58.282 41.667 8.10 8.10 37.86 3.42
2748 2926 6.994496 TGCAATATGAGTAGATGCTAGCTTTT 59.006 34.615 17.23 7.60 37.86 2.27
2749 2927 7.041576 TGCAATATGAGTAGATGCTAGCTTTTG 60.042 37.037 17.23 8.58 37.86 2.44
2750 2928 8.043767 GCAATATGAGTAGATGCTAGCTTTTGC 61.044 40.741 17.23 14.14 38.67 3.68
2760 2938 3.432186 GCTTTTGCCGAGTGTGGT 58.568 55.556 0.00 0.00 40.15 4.16
2761 2939 1.008538 GCTTTTGCCGAGTGTGGTG 60.009 57.895 0.00 0.00 40.15 4.17
2762 2940 1.008538 CTTTTGCCGAGTGTGGTGC 60.009 57.895 0.00 0.00 0.00 5.01
2763 2941 1.447317 CTTTTGCCGAGTGTGGTGCT 61.447 55.000 0.00 0.00 0.00 4.40
2764 2942 1.444119 TTTTGCCGAGTGTGGTGCTC 61.444 55.000 0.00 0.00 0.00 4.26
2765 2943 2.601194 TTTGCCGAGTGTGGTGCTCA 62.601 55.000 0.00 0.00 33.45 4.26
2766 2944 2.046892 GCCGAGTGTGGTGCTCAT 60.047 61.111 0.00 0.00 33.45 2.90
2767 2945 2.103042 GCCGAGTGTGGTGCTCATC 61.103 63.158 0.00 0.00 33.45 2.92
2768 2946 1.293179 CCGAGTGTGGTGCTCATCA 59.707 57.895 0.00 0.00 33.45 3.07
2769 2947 0.320683 CCGAGTGTGGTGCTCATCAA 60.321 55.000 0.00 0.00 33.45 2.57
2770 2948 1.511850 CGAGTGTGGTGCTCATCAAA 58.488 50.000 0.00 0.00 33.45 2.69
2771 2949 2.079158 CGAGTGTGGTGCTCATCAAAT 58.921 47.619 0.00 0.00 33.45 2.32
2772 2950 3.261580 CGAGTGTGGTGCTCATCAAATA 58.738 45.455 0.00 0.00 33.45 1.40
2773 2951 3.873361 CGAGTGTGGTGCTCATCAAATAT 59.127 43.478 0.00 0.00 33.45 1.28
2774 2952 4.333649 CGAGTGTGGTGCTCATCAAATATT 59.666 41.667 0.00 0.00 33.45 1.28
2775 2953 5.523552 CGAGTGTGGTGCTCATCAAATATTA 59.476 40.000 0.00 0.00 33.45 0.98
2776 2954 6.037062 CGAGTGTGGTGCTCATCAAATATTAA 59.963 38.462 0.00 0.00 33.45 1.40
2777 2955 7.088589 AGTGTGGTGCTCATCAAATATTAAC 57.911 36.000 0.00 0.00 0.00 2.01
2778 2956 6.658816 AGTGTGGTGCTCATCAAATATTAACA 59.341 34.615 0.00 0.00 0.00 2.41
2779 2957 7.176515 AGTGTGGTGCTCATCAAATATTAACAA 59.823 33.333 0.00 0.00 0.00 2.83
2780 2958 7.812191 GTGTGGTGCTCATCAAATATTAACAAA 59.188 33.333 0.00 0.00 0.00 2.83
2781 2959 8.028354 TGTGGTGCTCATCAAATATTAACAAAG 58.972 33.333 0.00 0.00 0.00 2.77
2782 2960 7.009540 GTGGTGCTCATCAAATATTAACAAAGC 59.990 37.037 0.00 0.00 0.00 3.51
2783 2961 7.093814 TGGTGCTCATCAAATATTAACAAAGCT 60.094 33.333 11.17 0.00 0.00 3.74
2784 2962 7.433425 GGTGCTCATCAAATATTAACAAAGCTC 59.567 37.037 11.17 8.52 0.00 4.09
2785 2963 7.970061 GTGCTCATCAAATATTAACAAAGCTCA 59.030 33.333 11.17 0.00 0.00 4.26
2786 2964 8.689061 TGCTCATCAAATATTAACAAAGCTCAT 58.311 29.630 11.17 0.00 0.00 2.90
2787 2965 8.965172 GCTCATCAAATATTAACAAAGCTCATG 58.035 33.333 0.00 0.00 0.00 3.07
2788 2966 8.861033 TCATCAAATATTAACAAAGCTCATGC 57.139 30.769 0.00 0.00 40.05 4.06
2798 2976 3.510846 GCTCATGCTTCTGCCAGG 58.489 61.111 0.00 0.00 38.71 4.45
2799 2977 2.772691 GCTCATGCTTCTGCCAGGC 61.773 63.158 3.66 3.66 38.71 4.85
2800 2978 1.378119 CTCATGCTTCTGCCAGGCA 60.378 57.895 15.23 15.23 40.32 4.75
2801 2979 0.752009 CTCATGCTTCTGCCAGGCAT 60.752 55.000 16.64 2.99 45.91 4.40
2802 2980 0.750546 TCATGCTTCTGCCAGGCATC 60.751 55.000 16.64 5.40 43.62 3.91
2803 2981 1.455217 ATGCTTCTGCCAGGCATCC 60.455 57.895 16.64 4.20 42.07 3.51
2804 2982 2.832201 GCTTCTGCCAGGCATCCC 60.832 66.667 16.64 0.00 38.13 3.85
2805 2983 3.004951 CTTCTGCCAGGCATCCCT 58.995 61.111 16.64 0.00 44.25 4.20
2806 2984 1.153005 CTTCTGCCAGGCATCCCTC 60.153 63.158 16.64 0.00 40.33 4.30
2807 2985 1.617536 TTCTGCCAGGCATCCCTCT 60.618 57.895 16.64 0.00 40.33 3.69
2808 2986 1.210204 TTCTGCCAGGCATCCCTCTT 61.210 55.000 16.64 0.00 40.33 2.85
2809 2987 1.210204 TCTGCCAGGCATCCCTCTTT 61.210 55.000 16.64 0.00 40.33 2.52
2810 2988 0.548031 CTGCCAGGCATCCCTCTTTA 59.452 55.000 16.64 0.00 40.33 1.85
2811 2989 0.255890 TGCCAGGCATCCCTCTTTAC 59.744 55.000 11.22 0.00 40.33 2.01
2812 2990 0.466372 GCCAGGCATCCCTCTTTACC 60.466 60.000 6.55 0.00 40.33 2.85
2813 2991 0.179045 CCAGGCATCCCTCTTTACCG 60.179 60.000 0.00 0.00 40.33 4.02
2814 2992 0.830648 CAGGCATCCCTCTTTACCGA 59.169 55.000 0.00 0.00 40.33 4.69
2815 2993 1.123928 AGGCATCCCTCTTTACCGAG 58.876 55.000 0.00 0.00 36.46 4.63
2816 2994 0.831307 GGCATCCCTCTTTACCGAGT 59.169 55.000 0.00 0.00 0.00 4.18
2817 2995 2.037144 GGCATCCCTCTTTACCGAGTA 58.963 52.381 0.00 0.00 0.00 2.59
2818 2996 2.223994 GGCATCCCTCTTTACCGAGTAC 60.224 54.545 0.00 0.00 0.00 2.73
2819 2997 2.694109 GCATCCCTCTTTACCGAGTACT 59.306 50.000 0.00 0.00 0.00 2.73
2820 2998 3.887716 GCATCCCTCTTTACCGAGTACTA 59.112 47.826 0.00 0.00 0.00 1.82
2821 2999 4.261530 GCATCCCTCTTTACCGAGTACTAC 60.262 50.000 0.00 0.00 0.00 2.73
2822 3000 4.851639 TCCCTCTTTACCGAGTACTACT 57.148 45.455 0.00 0.00 0.00 2.57
2823 3001 4.775236 TCCCTCTTTACCGAGTACTACTC 58.225 47.826 6.18 6.18 41.71 2.59
2824 3002 4.472833 TCCCTCTTTACCGAGTACTACTCT 59.527 45.833 13.28 0.00 42.92 3.24
2825 3003 4.815846 CCCTCTTTACCGAGTACTACTCTC 59.184 50.000 13.28 0.00 42.92 3.20
2826 3004 5.426504 CCTCTTTACCGAGTACTACTCTCA 58.573 45.833 13.28 0.00 42.92 3.27
2827 3005 5.294060 CCTCTTTACCGAGTACTACTCTCAC 59.706 48.000 13.28 0.00 42.92 3.51
2828 3006 5.181748 TCTTTACCGAGTACTACTCTCACC 58.818 45.833 13.28 0.00 42.92 4.02
2829 3007 4.558226 TTACCGAGTACTACTCTCACCA 57.442 45.455 13.28 0.00 42.92 4.17
2830 3008 3.430042 ACCGAGTACTACTCTCACCAA 57.570 47.619 13.28 0.00 42.92 3.67
2831 3009 3.759581 ACCGAGTACTACTCTCACCAAA 58.240 45.455 13.28 0.00 42.92 3.28
2832 3010 4.342359 ACCGAGTACTACTCTCACCAAAT 58.658 43.478 13.28 0.00 42.92 2.32
2833 3011 4.158025 ACCGAGTACTACTCTCACCAAATG 59.842 45.833 13.28 0.00 42.92 2.32
2834 3012 4.106197 CGAGTACTACTCTCACCAAATGC 58.894 47.826 13.28 0.00 42.92 3.56
2835 3013 4.142359 CGAGTACTACTCTCACCAAATGCT 60.142 45.833 13.28 0.00 42.92 3.79
2836 3014 5.331876 AGTACTACTCTCACCAAATGCTC 57.668 43.478 0.00 0.00 0.00 4.26
2837 3015 3.618690 ACTACTCTCACCAAATGCTCC 57.381 47.619 0.00 0.00 0.00 4.70
2838 3016 2.906389 ACTACTCTCACCAAATGCTCCA 59.094 45.455 0.00 0.00 0.00 3.86
2839 3017 2.191128 ACTCTCACCAAATGCTCCAC 57.809 50.000 0.00 0.00 0.00 4.02
2840 3018 1.081892 CTCTCACCAAATGCTCCACG 58.918 55.000 0.00 0.00 0.00 4.94
2841 3019 0.321564 TCTCACCAAATGCTCCACGG 60.322 55.000 0.00 0.00 0.00 4.94
2842 3020 0.321564 CTCACCAAATGCTCCACGGA 60.322 55.000 0.00 0.00 0.00 4.69
2843 3021 0.109532 TCACCAAATGCTCCACGGAA 59.890 50.000 0.00 0.00 0.00 4.30
2844 3022 1.176527 CACCAAATGCTCCACGGAAT 58.823 50.000 0.00 0.00 0.00 3.01
2845 3023 1.545582 CACCAAATGCTCCACGGAATT 59.454 47.619 0.00 0.00 0.00 2.17
2846 3024 2.029110 CACCAAATGCTCCACGGAATTT 60.029 45.455 0.00 0.00 0.00 1.82
2847 3025 2.632512 ACCAAATGCTCCACGGAATTTT 59.367 40.909 0.00 0.00 0.00 1.82
2848 3026 3.253230 CCAAATGCTCCACGGAATTTTC 58.747 45.455 0.00 0.00 0.00 2.29
2849 3027 2.916716 CAAATGCTCCACGGAATTTTCG 59.083 45.455 0.00 0.00 0.00 3.46
2850 3028 0.451783 ATGCTCCACGGAATTTTCGC 59.548 50.000 0.00 0.00 0.00 4.70
2851 3029 1.136774 GCTCCACGGAATTTTCGCC 59.863 57.895 0.00 0.00 0.00 5.54
2852 3030 1.582610 GCTCCACGGAATTTTCGCCA 61.583 55.000 0.00 0.00 0.00 5.69
2853 3031 0.878416 CTCCACGGAATTTTCGCCAA 59.122 50.000 0.00 0.00 0.00 4.52
2854 3032 0.878416 TCCACGGAATTTTCGCCAAG 59.122 50.000 0.00 0.00 0.00 3.61
2855 3033 0.596082 CCACGGAATTTTCGCCAAGT 59.404 50.000 0.00 0.00 0.00 3.16
2856 3034 1.665735 CCACGGAATTTTCGCCAAGTG 60.666 52.381 0.00 0.00 0.00 3.16
2857 3035 1.001815 CACGGAATTTTCGCCAAGTGT 60.002 47.619 0.00 0.00 0.00 3.55
2858 3036 1.679153 ACGGAATTTTCGCCAAGTGTT 59.321 42.857 0.00 0.00 0.00 3.32
2859 3037 2.050691 CGGAATTTTCGCCAAGTGTTG 58.949 47.619 0.00 0.00 0.00 3.33
2860 3038 2.287308 CGGAATTTTCGCCAAGTGTTGA 60.287 45.455 0.00 0.00 0.00 3.18
2861 3039 3.712187 GGAATTTTCGCCAAGTGTTGAA 58.288 40.909 0.00 0.00 0.00 2.69
2862 3040 4.116238 GGAATTTTCGCCAAGTGTTGAAA 58.884 39.130 0.00 0.00 0.00 2.69
2863 3041 4.026062 GGAATTTTCGCCAAGTGTTGAAAC 60.026 41.667 0.00 0.00 30.66 2.78
2864 3042 3.859411 TTTTCGCCAAGTGTTGAAACT 57.141 38.095 0.00 0.00 30.66 2.66
2865 3043 3.414549 TTTCGCCAAGTGTTGAAACTC 57.585 42.857 0.00 0.00 0.00 3.01
2866 3044 0.934496 TCGCCAAGTGTTGAAACTCG 59.066 50.000 0.00 0.00 0.00 4.18
2867 3045 0.041312 CGCCAAGTGTTGAAACTCGG 60.041 55.000 0.00 0.00 0.00 4.63
2868 3046 0.317854 GCCAAGTGTTGAAACTCGGC 60.318 55.000 0.00 0.00 0.00 5.54
2869 3047 1.021202 CCAAGTGTTGAAACTCGGCA 58.979 50.000 0.00 0.00 0.00 5.69
2870 3048 1.403679 CCAAGTGTTGAAACTCGGCAA 59.596 47.619 0.00 0.00 0.00 4.52
2871 3049 2.159310 CCAAGTGTTGAAACTCGGCAAA 60.159 45.455 0.00 0.00 0.00 3.68
2872 3050 2.844122 AGTGTTGAAACTCGGCAAAC 57.156 45.000 0.00 0.00 0.00 2.93
2873 3051 2.365582 AGTGTTGAAACTCGGCAAACT 58.634 42.857 0.00 0.00 0.00 2.66
2874 3052 2.097466 AGTGTTGAAACTCGGCAAACTG 59.903 45.455 0.00 0.00 0.00 3.16
2875 3053 2.088423 TGTTGAAACTCGGCAAACTGT 58.912 42.857 0.00 0.00 0.00 3.55
2876 3054 2.096819 TGTTGAAACTCGGCAAACTGTC 59.903 45.455 0.00 0.00 0.00 3.51
2877 3055 2.031258 TGAAACTCGGCAAACTGTCA 57.969 45.000 0.00 0.00 0.00 3.58
2878 3056 2.360844 TGAAACTCGGCAAACTGTCAA 58.639 42.857 0.00 0.00 0.00 3.18
2879 3057 2.096819 TGAAACTCGGCAAACTGTCAAC 59.903 45.455 0.00 0.00 0.00 3.18
2880 3058 1.021968 AACTCGGCAAACTGTCAACC 58.978 50.000 0.00 0.00 0.00 3.77
2881 3059 0.107410 ACTCGGCAAACTGTCAACCA 60.107 50.000 0.00 0.00 0.00 3.67
2882 3060 1.238439 CTCGGCAAACTGTCAACCAT 58.762 50.000 0.00 0.00 0.00 3.55
2883 3061 0.950836 TCGGCAAACTGTCAACCATG 59.049 50.000 0.00 0.00 0.00 3.66
2884 3062 0.667993 CGGCAAACTGTCAACCATGT 59.332 50.000 0.00 0.00 0.00 3.21
2885 3063 1.066908 CGGCAAACTGTCAACCATGTT 59.933 47.619 0.00 0.00 0.00 2.71
2886 3064 2.481104 CGGCAAACTGTCAACCATGTTT 60.481 45.455 0.00 0.00 33.56 2.83
2887 3065 3.530535 GGCAAACTGTCAACCATGTTTT 58.469 40.909 0.00 0.00 31.30 2.43
2888 3066 3.938334 GGCAAACTGTCAACCATGTTTTT 59.062 39.130 0.00 0.00 31.30 1.94
2889 3067 5.112686 GGCAAACTGTCAACCATGTTTTTA 58.887 37.500 0.00 0.00 31.30 1.52
2890 3068 5.006261 GGCAAACTGTCAACCATGTTTTTAC 59.994 40.000 0.00 0.00 31.30 2.01
2891 3069 5.006261 GCAAACTGTCAACCATGTTTTTACC 59.994 40.000 0.00 0.00 31.30 2.85
2892 3070 4.561735 ACTGTCAACCATGTTTTTACCG 57.438 40.909 0.00 0.00 0.00 4.02
2893 3071 3.949113 ACTGTCAACCATGTTTTTACCGT 59.051 39.130 0.00 0.00 0.00 4.83
2894 3072 5.124645 ACTGTCAACCATGTTTTTACCGTA 58.875 37.500 0.00 0.00 0.00 4.02
2895 3073 5.589452 ACTGTCAACCATGTTTTTACCGTAA 59.411 36.000 0.00 0.00 0.00 3.18
2896 3074 5.819059 TGTCAACCATGTTTTTACCGTAAC 58.181 37.500 0.00 0.00 0.00 2.50
2897 3075 5.356190 TGTCAACCATGTTTTTACCGTAACA 59.644 36.000 0.00 0.00 38.50 2.41
2898 3076 6.039493 TGTCAACCATGTTTTTACCGTAACAT 59.961 34.615 0.00 0.00 43.70 2.71
2899 3077 7.228108 TGTCAACCATGTTTTTACCGTAACATA 59.772 33.333 0.00 0.00 41.65 2.29
2900 3078 8.074972 GTCAACCATGTTTTTACCGTAACATAA 58.925 33.333 0.00 0.00 41.65 1.90
2901 3079 8.074972 TCAACCATGTTTTTACCGTAACATAAC 58.925 33.333 0.00 2.08 41.65 1.89
2902 3080 7.507733 ACCATGTTTTTACCGTAACATAACA 57.492 32.000 11.95 11.95 41.65 2.41
2903 3081 7.361894 ACCATGTTTTTACCGTAACATAACAC 58.638 34.615 11.87 0.00 41.65 3.32
2904 3082 7.013083 ACCATGTTTTTACCGTAACATAACACA 59.987 33.333 11.87 0.80 41.65 3.72
2905 3083 7.324135 CCATGTTTTTACCGTAACATAACACAC 59.676 37.037 11.87 0.00 41.65 3.82
2906 3084 6.723282 TGTTTTTACCGTAACATAACACACC 58.277 36.000 7.96 0.00 29.82 4.16
2907 3085 5.938438 TTTTACCGTAACATAACACACCC 57.062 39.130 0.00 0.00 0.00 4.61
2908 3086 2.477845 ACCGTAACATAACACACCCC 57.522 50.000 0.00 0.00 0.00 4.95
2909 3087 1.698532 ACCGTAACATAACACACCCCA 59.301 47.619 0.00 0.00 0.00 4.96
2910 3088 2.106166 ACCGTAACATAACACACCCCAA 59.894 45.455 0.00 0.00 0.00 4.12
2911 3089 2.745281 CCGTAACATAACACACCCCAAG 59.255 50.000 0.00 0.00 0.00 3.61
2912 3090 3.557475 CCGTAACATAACACACCCCAAGA 60.557 47.826 0.00 0.00 0.00 3.02
2913 3091 3.434299 CGTAACATAACACACCCCAAGAC 59.566 47.826 0.00 0.00 0.00 3.01
2914 3092 3.586470 AACATAACACACCCCAAGACA 57.414 42.857 0.00 0.00 0.00 3.41
2915 3093 3.586470 ACATAACACACCCCAAGACAA 57.414 42.857 0.00 0.00 0.00 3.18
2916 3094 3.904717 ACATAACACACCCCAAGACAAA 58.095 40.909 0.00 0.00 0.00 2.83
2917 3095 4.479158 ACATAACACACCCCAAGACAAAT 58.521 39.130 0.00 0.00 0.00 2.32
2918 3096 5.636123 ACATAACACACCCCAAGACAAATA 58.364 37.500 0.00 0.00 0.00 1.40
2919 3097 6.252995 ACATAACACACCCCAAGACAAATAT 58.747 36.000 0.00 0.00 0.00 1.28
2920 3098 6.723977 ACATAACACACCCCAAGACAAATATT 59.276 34.615 0.00 0.00 0.00 1.28
2921 3099 5.467035 AACACACCCCAAGACAAATATTG 57.533 39.130 0.00 0.00 0.00 1.90
2922 3100 4.735369 ACACACCCCAAGACAAATATTGA 58.265 39.130 0.00 0.00 0.00 2.57
2923 3101 5.144100 ACACACCCCAAGACAAATATTGAA 58.856 37.500 0.00 0.00 0.00 2.69
2924 3102 5.010617 ACACACCCCAAGACAAATATTGAAC 59.989 40.000 0.00 0.00 0.00 3.18
2925 3103 4.526650 ACACCCCAAGACAAATATTGAACC 59.473 41.667 0.00 0.00 0.00 3.62
2926 3104 4.526262 CACCCCAAGACAAATATTGAACCA 59.474 41.667 0.00 0.00 0.00 3.67
2927 3105 5.187576 CACCCCAAGACAAATATTGAACCAT 59.812 40.000 0.00 0.00 0.00 3.55
2928 3106 5.422012 ACCCCAAGACAAATATTGAACCATC 59.578 40.000 0.00 0.00 0.00 3.51
2929 3107 5.163416 CCCCAAGACAAATATTGAACCATCC 60.163 44.000 0.00 0.00 0.00 3.51
2930 3108 5.163416 CCCAAGACAAATATTGAACCATCCC 60.163 44.000 0.00 0.00 0.00 3.85
2931 3109 5.421693 CCAAGACAAATATTGAACCATCCCA 59.578 40.000 0.00 0.00 0.00 4.37
2932 3110 6.070881 CCAAGACAAATATTGAACCATCCCAA 60.071 38.462 0.00 0.00 0.00 4.12
2933 3111 7.385267 CAAGACAAATATTGAACCATCCCAAA 58.615 34.615 0.00 0.00 0.00 3.28
2934 3112 7.552050 AGACAAATATTGAACCATCCCAAAA 57.448 32.000 0.00 0.00 0.00 2.44
2935 3113 8.149631 AGACAAATATTGAACCATCCCAAAAT 57.850 30.769 0.00 0.00 0.00 1.82
2936 3114 8.605065 AGACAAATATTGAACCATCCCAAAATT 58.395 29.630 0.00 0.00 0.00 1.82
2937 3115 8.564509 ACAAATATTGAACCATCCCAAAATTG 57.435 30.769 0.00 0.00 0.00 2.32
2938 3116 8.162746 ACAAATATTGAACCATCCCAAAATTGT 58.837 29.630 0.00 0.00 0.00 2.71
2939 3117 8.667463 CAAATATTGAACCATCCCAAAATTGTC 58.333 33.333 0.00 0.00 0.00 3.18
2940 3118 5.822132 ATTGAACCATCCCAAAATTGTCA 57.178 34.783 0.00 0.00 0.00 3.58
2941 3119 4.599047 TGAACCATCCCAAAATTGTCAC 57.401 40.909 0.00 0.00 0.00 3.67
2942 3120 3.963374 TGAACCATCCCAAAATTGTCACA 59.037 39.130 0.00 0.00 0.00 3.58
2943 3121 4.406972 TGAACCATCCCAAAATTGTCACAA 59.593 37.500 0.00 0.00 0.00 3.33
2944 3122 5.104776 TGAACCATCCCAAAATTGTCACAAA 60.105 36.000 0.00 0.00 0.00 2.83
2945 3123 5.565455 ACCATCCCAAAATTGTCACAAAT 57.435 34.783 0.00 0.00 0.00 2.32
2946 3124 6.678568 ACCATCCCAAAATTGTCACAAATA 57.321 33.333 0.00 0.00 0.00 1.40
2947 3125 6.700352 ACCATCCCAAAATTGTCACAAATAG 58.300 36.000 0.00 0.00 0.00 1.73
2948 3126 6.269769 ACCATCCCAAAATTGTCACAAATAGT 59.730 34.615 0.00 0.00 0.00 2.12
2949 3127 6.813152 CCATCCCAAAATTGTCACAAATAGTC 59.187 38.462 0.00 0.00 0.00 2.59
2950 3128 6.339587 TCCCAAAATTGTCACAAATAGTCC 57.660 37.500 0.00 0.00 0.00 3.85
2951 3129 5.245075 TCCCAAAATTGTCACAAATAGTCCC 59.755 40.000 0.00 0.00 0.00 4.46
2952 3130 5.011533 CCCAAAATTGTCACAAATAGTCCCA 59.988 40.000 0.00 0.00 0.00 4.37
2953 3131 6.158598 CCAAAATTGTCACAAATAGTCCCAG 58.841 40.000 0.00 0.00 0.00 4.45
2954 3132 6.015519 CCAAAATTGTCACAAATAGTCCCAGA 60.016 38.462 0.00 0.00 0.00 3.86
2955 3133 6.824305 AAATTGTCACAAATAGTCCCAGAG 57.176 37.500 0.00 0.00 0.00 3.35
2956 3134 5.762179 ATTGTCACAAATAGTCCCAGAGA 57.238 39.130 0.00 0.00 0.00 3.10
2957 3135 5.762179 TTGTCACAAATAGTCCCAGAGAT 57.238 39.130 0.00 0.00 0.00 2.75
2958 3136 5.762179 TGTCACAAATAGTCCCAGAGATT 57.238 39.130 0.00 0.00 0.00 2.40
2959 3137 5.491070 TGTCACAAATAGTCCCAGAGATTG 58.509 41.667 0.00 0.00 0.00 2.67
2960 3138 5.013079 TGTCACAAATAGTCCCAGAGATTGT 59.987 40.000 0.00 0.00 0.00 2.71
2961 3139 6.212589 TGTCACAAATAGTCCCAGAGATTGTA 59.787 38.462 0.00 0.00 0.00 2.41
2962 3140 6.535508 GTCACAAATAGTCCCAGAGATTGTAC 59.464 42.308 0.00 0.00 0.00 2.90
2963 3141 6.440647 TCACAAATAGTCCCAGAGATTGTACT 59.559 38.462 0.00 0.00 0.00 2.73
2964 3142 7.618117 TCACAAATAGTCCCAGAGATTGTACTA 59.382 37.037 0.00 0.00 31.69 1.82
2965 3143 8.424918 CACAAATAGTCCCAGAGATTGTACTAT 58.575 37.037 0.00 0.00 36.44 2.12
2966 3144 8.424918 ACAAATAGTCCCAGAGATTGTACTATG 58.575 37.037 0.00 0.00 35.71 2.23
2967 3145 8.424918 CAAATAGTCCCAGAGATTGTACTATGT 58.575 37.037 0.00 0.00 35.71 2.29
2968 3146 9.656323 AAATAGTCCCAGAGATTGTACTATGTA 57.344 33.333 0.00 0.00 35.71 2.29
2969 3147 8.871629 ATAGTCCCAGAGATTGTACTATGTAG 57.128 38.462 0.00 0.00 34.92 2.74
2970 3148 6.674573 AGTCCCAGAGATTGTACTATGTAGT 58.325 40.000 0.00 0.00 40.24 2.73
2971 3149 6.547880 AGTCCCAGAGATTGTACTATGTAGTG 59.452 42.308 3.00 0.00 37.10 2.74
2972 3150 6.546403 GTCCCAGAGATTGTACTATGTAGTGA 59.454 42.308 3.00 0.00 37.10 3.41
2973 3151 7.231722 GTCCCAGAGATTGTACTATGTAGTGAT 59.768 40.741 3.00 0.00 37.10 3.06
2974 3152 7.785028 TCCCAGAGATTGTACTATGTAGTGATT 59.215 37.037 3.00 0.00 37.10 2.57
2975 3153 9.078990 CCCAGAGATTGTACTATGTAGTGATTA 57.921 37.037 3.00 0.00 37.10 1.75
2987 3165 9.618890 ACTATGTAGTGATTATTTGATGCAGTT 57.381 29.630 0.00 0.00 34.72 3.16
2990 3168 8.334263 TGTAGTGATTATTTGATGCAGTTTGA 57.666 30.769 0.00 0.00 0.00 2.69
2991 3169 8.453320 TGTAGTGATTATTTGATGCAGTTTGAG 58.547 33.333 0.00 0.00 0.00 3.02
2992 3170 6.860080 AGTGATTATTTGATGCAGTTTGAGG 58.140 36.000 0.00 0.00 0.00 3.86
2993 3171 6.038356 GTGATTATTTGATGCAGTTTGAGGG 58.962 40.000 0.00 0.00 0.00 4.30
2994 3172 5.951148 TGATTATTTGATGCAGTTTGAGGGA 59.049 36.000 0.00 0.00 0.00 4.20
2995 3173 6.608405 TGATTATTTGATGCAGTTTGAGGGAT 59.392 34.615 0.00 0.00 0.00 3.85
2996 3174 6.855763 TTATTTGATGCAGTTTGAGGGATT 57.144 33.333 0.00 0.00 0.00 3.01
2997 3175 7.953005 TTATTTGATGCAGTTTGAGGGATTA 57.047 32.000 0.00 0.00 0.00 1.75
2998 3176 8.537728 TTATTTGATGCAGTTTGAGGGATTAT 57.462 30.769 0.00 0.00 0.00 1.28
2999 3177 6.455360 TTTGATGCAGTTTGAGGGATTATC 57.545 37.500 0.00 0.00 0.00 1.75
3000 3178 5.114764 TGATGCAGTTTGAGGGATTATCA 57.885 39.130 0.00 0.00 0.00 2.15
3001 3179 5.698104 TGATGCAGTTTGAGGGATTATCAT 58.302 37.500 0.00 0.00 0.00 2.45
3002 3180 6.131264 TGATGCAGTTTGAGGGATTATCATT 58.869 36.000 0.00 0.00 0.00 2.57
3003 3181 7.289310 TGATGCAGTTTGAGGGATTATCATTA 58.711 34.615 0.00 0.00 0.00 1.90
3004 3182 7.946219 TGATGCAGTTTGAGGGATTATCATTAT 59.054 33.333 0.00 0.00 0.00 1.28
3005 3183 7.514784 TGCAGTTTGAGGGATTATCATTATG 57.485 36.000 0.00 0.00 0.00 1.90
3006 3184 7.062322 TGCAGTTTGAGGGATTATCATTATGT 58.938 34.615 0.00 0.00 0.00 2.29
3007 3185 7.560991 TGCAGTTTGAGGGATTATCATTATGTT 59.439 33.333 0.00 0.00 0.00 2.71
3008 3186 8.078596 GCAGTTTGAGGGATTATCATTATGTTC 58.921 37.037 0.00 0.00 0.00 3.18
3009 3187 9.123902 CAGTTTGAGGGATTATCATTATGTTCA 57.876 33.333 0.00 0.00 0.00 3.18
3010 3188 9.699410 AGTTTGAGGGATTATCATTATGTTCAA 57.301 29.630 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.119096 GAGAACGCCCCGCAGAAC 61.119 66.667 0.00 0.00 0.00 3.01
48 49 3.311110 AGAGAACGCCCCGCAGAA 61.311 61.111 0.00 0.00 0.00 3.02
49 50 4.069232 CAGAGAACGCCCCGCAGA 62.069 66.667 0.00 0.00 0.00 4.26
53 54 4.760047 CCACCAGAGAACGCCCCG 62.760 72.222 0.00 0.00 0.00 5.73
54 55 3.316573 CTCCACCAGAGAACGCCCC 62.317 68.421 0.00 0.00 46.50 5.80
55 56 2.266055 CTCCACCAGAGAACGCCC 59.734 66.667 0.00 0.00 46.50 6.13
56 57 2.266055 CCTCCACCAGAGAACGCC 59.734 66.667 0.00 0.00 46.50 5.68
57 58 2.232298 CTCCCTCCACCAGAGAACGC 62.232 65.000 0.00 0.00 46.50 4.84
58 59 1.608717 CCTCCCTCCACCAGAGAACG 61.609 65.000 0.00 0.00 46.50 3.95
59 60 1.904990 GCCTCCCTCCACCAGAGAAC 61.905 65.000 0.00 0.00 46.50 3.01
60 61 1.613630 GCCTCCCTCCACCAGAGAA 60.614 63.158 0.00 0.00 46.50 2.87
61 62 2.039624 GCCTCCCTCCACCAGAGA 59.960 66.667 0.00 0.00 46.50 3.10
62 63 2.040278 AGCCTCCCTCCACCAGAG 59.960 66.667 0.00 0.00 42.83 3.35
63 64 2.039624 GAGCCTCCCTCCACCAGA 59.960 66.667 0.00 0.00 34.35 3.86
64 65 3.465403 CGAGCCTCCCTCCACCAG 61.465 72.222 0.00 0.00 37.27 4.00
67 68 3.844090 GAGCGAGCCTCCCTCCAC 61.844 72.222 0.00 0.00 37.27 4.02
82 83 4.147449 TGCCATGACGAGCGGGAG 62.147 66.667 0.00 0.00 0.00 4.30
83 84 4.147449 CTGCCATGACGAGCGGGA 62.147 66.667 0.00 0.00 0.00 5.14
87 88 2.515523 ATGGCTGCCATGACGAGC 60.516 61.111 32.12 0.00 43.39 5.03
101 102 4.511246 ATCCACCAGGCGCCATGG 62.511 66.667 31.25 31.25 43.87 3.66
102 103 2.440796 AATCCACCAGGCGCCATG 60.441 61.111 31.54 22.70 33.74 3.66
103 104 2.124151 GAATCCACCAGGCGCCAT 60.124 61.111 31.54 11.14 33.74 4.40
104 105 3.626996 CTGAATCCACCAGGCGCCA 62.627 63.158 31.54 6.82 33.74 5.69
105 106 2.825836 CTGAATCCACCAGGCGCC 60.826 66.667 21.89 21.89 33.74 6.53
106 107 3.512516 GCTGAATCCACCAGGCGC 61.513 66.667 0.00 0.00 33.74 6.53
107 108 1.817099 GAGCTGAATCCACCAGGCG 60.817 63.158 0.00 0.00 33.74 5.52
108 109 1.452833 GGAGCTGAATCCACCAGGC 60.453 63.158 0.00 0.00 39.34 4.85
109 110 1.993653 TGGAGCTGAATCCACCAGG 59.006 57.895 0.00 0.00 44.56 4.45
115 116 2.570135 GACCTCAATGGAGCTGAATCC 58.430 52.381 0.00 0.00 39.96 3.01
116 117 2.092753 TGGACCTCAATGGAGCTGAATC 60.093 50.000 0.00 0.00 39.96 2.52
117 118 1.918262 TGGACCTCAATGGAGCTGAAT 59.082 47.619 0.00 0.00 39.96 2.57
118 119 1.003580 GTGGACCTCAATGGAGCTGAA 59.996 52.381 0.00 0.00 39.96 3.02
119 120 0.615331 GTGGACCTCAATGGAGCTGA 59.385 55.000 0.00 0.00 39.96 4.26
120 121 0.393537 GGTGGACCTCAATGGAGCTG 60.394 60.000 0.00 0.00 39.96 4.24
121 122 0.842030 TGGTGGACCTCAATGGAGCT 60.842 55.000 0.00 0.00 39.96 4.09
122 123 0.038166 TTGGTGGACCTCAATGGAGC 59.962 55.000 0.00 0.00 39.96 4.70
148 149 0.883833 GAGGTGAATGTGTTGCAGGG 59.116 55.000 0.00 0.00 0.00 4.45
169 170 2.993264 GGTCGGACCCCTTGTCGA 60.993 66.667 16.55 0.00 45.46 4.20
177 178 2.263852 GAAACGGAGGTCGGACCC 59.736 66.667 23.21 14.29 44.45 4.46
231 232 4.720902 TGGCGCCCTGATGTGGTG 62.721 66.667 26.77 0.00 36.44 4.17
232 233 1.920734 TAATGGCGCCCTGATGTGGT 61.921 55.000 26.77 0.00 0.00 4.16
233 234 1.152984 TAATGGCGCCCTGATGTGG 60.153 57.895 26.77 0.00 0.00 4.17
234 235 1.168407 CCTAATGGCGCCCTGATGTG 61.168 60.000 26.77 7.41 0.00 3.21
235 236 1.149174 CCTAATGGCGCCCTGATGT 59.851 57.895 26.77 0.61 0.00 3.06
236 237 4.069869 CCTAATGGCGCCCTGATG 57.930 61.111 26.77 10.26 0.00 3.07
260 261 1.686325 GGCGGCAAGTAGGGATCTGA 61.686 60.000 3.07 0.00 0.00 3.27
269 270 4.451150 CTGCGAGGGCGGCAAGTA 62.451 66.667 12.47 0.00 44.10 2.24
299 301 3.083997 GGCGAGGGGAGACATGGT 61.084 66.667 0.00 0.00 0.00 3.55
330 332 4.821589 GAGGCGTCGGGAAGCTGG 62.822 72.222 6.56 0.00 36.09 4.85
331 333 3.764466 AGAGGCGTCGGGAAGCTG 61.764 66.667 6.56 0.00 36.09 4.24
332 334 3.764466 CAGAGGCGTCGGGAAGCT 61.764 66.667 6.56 0.00 36.09 3.74
333 335 3.991536 GACAGAGGCGTCGGGAAGC 62.992 68.421 11.18 0.00 35.05 3.86
334 336 2.182030 GACAGAGGCGTCGGGAAG 59.818 66.667 11.18 0.00 0.00 3.46
335 337 3.379445 GGACAGAGGCGTCGGGAA 61.379 66.667 11.18 0.00 36.73 3.97
394 396 3.082579 GCTGGGTCTCGATCGGCTT 62.083 63.158 16.41 0.00 0.00 4.35
398 400 1.949847 AACAGGCTGGGTCTCGATCG 61.950 60.000 20.34 9.36 0.00 3.69
475 477 2.253452 CCGTGCTGAAGTGCAAGC 59.747 61.111 1.00 1.00 45.12 4.01
481 483 3.736483 CACAAGCCGTGCTGAAGT 58.264 55.556 0.00 0.00 39.62 3.01
495 497 1.596934 GATGGAAGTCCGAGGCACA 59.403 57.895 0.00 0.00 39.43 4.57
528 530 3.005539 ATCGGAGTGGCCTGCAGT 61.006 61.111 13.81 0.00 0.00 4.40
540 542 1.045350 CAGGGAAGCAGAGGATCGGA 61.045 60.000 0.00 0.00 42.67 4.55
541 543 1.333636 ACAGGGAAGCAGAGGATCGG 61.334 60.000 0.00 0.00 42.67 4.18
542 544 0.179089 CACAGGGAAGCAGAGGATCG 60.179 60.000 0.00 0.00 42.67 3.69
543 545 0.463474 GCACAGGGAAGCAGAGGATC 60.463 60.000 0.00 0.00 0.00 3.36
544 546 1.203441 TGCACAGGGAAGCAGAGGAT 61.203 55.000 0.00 0.00 35.51 3.24
545 547 1.842920 TGCACAGGGAAGCAGAGGA 60.843 57.895 0.00 0.00 35.51 3.71
546 548 1.673665 GTGCACAGGGAAGCAGAGG 60.674 63.158 13.17 0.00 42.14 3.69
547 549 0.954449 CTGTGCACAGGGAAGCAGAG 60.954 60.000 34.65 9.83 44.08 3.35
597 599 2.809601 CGTGGAGGCGTGTGCTAC 60.810 66.667 0.00 0.00 42.25 3.58
598 600 2.986979 TCGTGGAGGCGTGTGCTA 60.987 61.111 0.00 0.00 42.25 3.49
599 601 4.664677 GTCGTGGAGGCGTGTGCT 62.665 66.667 0.00 0.00 42.25 4.40
600 602 4.961511 TGTCGTGGAGGCGTGTGC 62.962 66.667 0.00 0.00 41.71 4.57
601 603 3.036084 GTGTCGTGGAGGCGTGTG 61.036 66.667 0.00 0.00 0.00 3.82
602 604 4.295119 GGTGTCGTGGAGGCGTGT 62.295 66.667 0.00 0.00 0.00 4.49
753 755 4.588854 TACACACGCACGCCCGTT 62.589 61.111 0.00 0.00 39.83 4.44
907 911 4.158764 CCCTACTTTCAATCAGACGAGTCT 59.841 45.833 0.00 0.00 41.37 3.24
1008 1012 4.383880 GGAGGACTAATTAAGAAGCCCGTT 60.384 45.833 0.00 0.00 0.00 4.44
1010 1014 3.729966 GGAGGACTAATTAAGAAGCCCG 58.270 50.000 0.00 0.00 0.00 6.13
1051 1057 4.058817 GCGAATCGATGGAGGACTATTTT 58.941 43.478 6.91 0.00 0.00 1.82
1052 1058 3.555168 GGCGAATCGATGGAGGACTATTT 60.555 47.826 6.91 0.00 0.00 1.40
1053 1059 2.028930 GGCGAATCGATGGAGGACTATT 60.029 50.000 6.91 0.00 0.00 1.73
1387 1393 7.458397 ACATAACCTGAACATCTTCTTTGGTA 58.542 34.615 0.00 0.00 30.47 3.25
1407 1413 5.217393 GCCATACTCGTCACGAATACATAA 58.783 41.667 0.00 0.00 34.74 1.90
1521 1527 0.796312 ATGTGGTCGTCAATGAACGC 59.204 50.000 0.00 0.00 42.31 4.84
1733 1739 6.054860 TCCAGTCTTTTCTTTCTCCATAGG 57.945 41.667 0.00 0.00 0.00 2.57
1914 1920 5.696724 ACAGATATACAATCGCCAAAGCTAC 59.303 40.000 0.00 0.00 36.60 3.58
2004 2010 1.110442 AGCGAACCCATGAGAGAGAG 58.890 55.000 0.00 0.00 0.00 3.20
2005 2011 2.427453 GTTAGCGAACCCATGAGAGAGA 59.573 50.000 0.00 0.00 0.00 3.10
2006 2012 2.796383 CGTTAGCGAACCCATGAGAGAG 60.796 54.545 3.98 0.00 41.33 3.20
2206 2215 7.542130 CCCAAAACAAGCAAAATCTATCTGTAC 59.458 37.037 0.00 0.00 0.00 2.90
2209 2218 6.690530 TCCCAAAACAAGCAAAATCTATCTG 58.309 36.000 0.00 0.00 0.00 2.90
2281 2290 3.187700 ACACTGGAAACTCGATAATCGC 58.812 45.455 0.00 0.00 40.21 4.58
2326 2335 2.147958 ACTTAGCAAACGAAATGCCGA 58.852 42.857 7.91 0.00 44.91 5.54
2348 2357 2.362077 GAGTCCTGTTTGCCAACAACAT 59.638 45.455 4.76 0.00 42.53 2.71
2353 2362 1.949257 CCGAGTCCTGTTTGCCAAC 59.051 57.895 0.00 0.00 0.00 3.77
2419 2428 9.262472 CAATTACTATTTAAGTGTTTGTCGAGC 57.738 33.333 0.00 0.00 39.39 5.03
2498 2670 4.040217 GGCCATATGAATGCCCATTAAACA 59.960 41.667 3.65 0.00 30.72 2.83
2516 2688 0.036010 CTCGACAAAGGTCTGGCCAT 60.036 55.000 5.51 0.00 42.05 4.40
2540 2712 2.029964 GCGGAGTTTGGTCGGACA 59.970 61.111 10.76 0.00 0.00 4.02
2555 2733 2.460918 CCTACTCGTTGATAGGTTGCG 58.539 52.381 0.00 0.00 34.36 4.85
2562 2740 2.429610 GTTGAGCCCCTACTCGTTGATA 59.570 50.000 0.00 0.00 39.68 2.15
2597 2775 5.520632 TCAACAAACGACAACTCAACAAAA 58.479 33.333 0.00 0.00 0.00 2.44
2611 2789 3.425193 GCTATGCCAAGTTTCAACAAACG 59.575 43.478 0.00 0.00 45.81 3.60
2652 2830 1.372997 GCTCGTCAAAGGTCTGCGA 60.373 57.895 0.00 0.00 0.00 5.10
2679 2857 1.818850 CATAAGCTTGTGCATGCGTC 58.181 50.000 14.09 9.43 42.74 5.19
2683 2861 2.094390 ACTTGGCATAAGCTTGTGCATG 60.094 45.455 38.11 29.60 45.65 4.06
2724 2902 7.296660 CAAAAGCTAGCATCTACTCATATTGC 58.703 38.462 18.83 0.00 0.00 3.56
2730 2908 3.535561 GGCAAAAGCTAGCATCTACTCA 58.464 45.455 18.83 0.00 0.00 3.41
2744 2922 1.008538 GCACCACACTCGGCAAAAG 60.009 57.895 0.00 0.00 0.00 2.27
2748 2926 2.786539 GATGAGCACCACACTCGGCA 62.787 60.000 0.00 0.00 36.94 5.69
2749 2927 2.046892 ATGAGCACCACACTCGGC 60.047 61.111 0.00 0.00 36.94 5.54
2750 2928 0.320683 TTGATGAGCACCACACTCGG 60.321 55.000 0.00 0.00 36.94 4.63
2751 2929 1.511850 TTTGATGAGCACCACACTCG 58.488 50.000 0.00 0.00 36.94 4.18
2752 2930 5.824904 AATATTTGATGAGCACCACACTC 57.175 39.130 0.00 0.00 34.62 3.51
2753 2931 6.658816 TGTTAATATTTGATGAGCACCACACT 59.341 34.615 0.00 0.00 0.00 3.55
2754 2932 6.851609 TGTTAATATTTGATGAGCACCACAC 58.148 36.000 0.00 0.00 0.00 3.82
2755 2933 7.459795 TTGTTAATATTTGATGAGCACCACA 57.540 32.000 0.00 0.00 0.00 4.17
2756 2934 7.009540 GCTTTGTTAATATTTGATGAGCACCAC 59.990 37.037 0.00 0.00 0.00 4.16
2757 2935 7.035004 GCTTTGTTAATATTTGATGAGCACCA 58.965 34.615 0.00 0.00 0.00 4.17
2758 2936 7.260603 AGCTTTGTTAATATTTGATGAGCACC 58.739 34.615 12.36 0.00 0.00 5.01
2759 2937 7.970061 TGAGCTTTGTTAATATTTGATGAGCAC 59.030 33.333 12.36 8.41 0.00 4.40
2760 2938 8.054152 TGAGCTTTGTTAATATTTGATGAGCA 57.946 30.769 12.36 0.00 0.00 4.26
2761 2939 8.965172 CATGAGCTTTGTTAATATTTGATGAGC 58.035 33.333 0.00 0.00 0.00 4.26
2762 2940 8.965172 GCATGAGCTTTGTTAATATTTGATGAG 58.035 33.333 0.00 0.00 37.91 2.90
2763 2941 8.861033 GCATGAGCTTTGTTAATATTTGATGA 57.139 30.769 0.00 0.00 37.91 2.92
2781 2959 2.772691 GCCTGGCAGAAGCATGAGC 61.773 63.158 17.94 4.03 44.61 4.26
2782 2960 0.752009 ATGCCTGGCAGAAGCATGAG 60.752 55.000 27.20 4.84 45.20 2.90
2783 2961 0.750546 GATGCCTGGCAGAAGCATGA 60.751 55.000 28.27 6.38 46.81 3.07
2784 2962 1.734137 GATGCCTGGCAGAAGCATG 59.266 57.895 28.27 8.62 46.81 4.06
2786 2964 2.044650 GGATGCCTGGCAGAAGCA 60.045 61.111 27.20 18.30 43.65 3.91
2787 2965 2.832201 GGGATGCCTGGCAGAAGC 60.832 66.667 27.20 12.60 43.65 3.86
2788 2966 1.153005 GAGGGATGCCTGGCAGAAG 60.153 63.158 27.20 0.41 43.65 2.85
2789 2967 1.210204 AAGAGGGATGCCTGGCAGAA 61.210 55.000 27.20 3.16 43.65 3.02
2790 2968 1.210204 AAAGAGGGATGCCTGGCAGA 61.210 55.000 27.20 4.02 43.65 4.26
2791 2969 0.548031 TAAAGAGGGATGCCTGGCAG 59.452 55.000 27.20 7.75 43.65 4.85
2792 2970 0.255890 GTAAAGAGGGATGCCTGGCA 59.744 55.000 25.65 25.65 44.86 4.92
2793 2971 0.466372 GGTAAAGAGGGATGCCTGGC 60.466 60.000 12.02 12.87 0.00 4.85
2794 2972 0.179045 CGGTAAAGAGGGATGCCTGG 60.179 60.000 12.02 0.00 0.00 4.45
2795 2973 0.830648 TCGGTAAAGAGGGATGCCTG 59.169 55.000 12.02 0.00 0.00 4.85
2796 2974 1.123928 CTCGGTAAAGAGGGATGCCT 58.876 55.000 4.97 4.97 34.74 4.75
2797 2975 0.831307 ACTCGGTAAAGAGGGATGCC 59.169 55.000 0.00 0.00 42.31 4.40
2798 2976 2.694109 AGTACTCGGTAAAGAGGGATGC 59.306 50.000 0.00 0.00 42.31 3.91
2799 2977 5.131784 AGTAGTACTCGGTAAAGAGGGATG 58.868 45.833 0.00 0.00 42.31 3.51
2800 2978 5.375773 GAGTAGTACTCGGTAAAGAGGGAT 58.624 45.833 14.40 0.00 42.31 3.85
2801 2979 4.775236 GAGTAGTACTCGGTAAAGAGGGA 58.225 47.826 14.40 0.00 42.31 4.20
2813 2991 5.331876 AGCATTTGGTGAGAGTAGTACTC 57.668 43.478 20.73 20.73 45.38 2.59
2814 2992 4.160626 GGAGCATTTGGTGAGAGTAGTACT 59.839 45.833 1.37 1.37 0.00 2.73
2815 2993 4.081642 TGGAGCATTTGGTGAGAGTAGTAC 60.082 45.833 0.00 0.00 0.00 2.73
2816 2994 4.081642 GTGGAGCATTTGGTGAGAGTAGTA 60.082 45.833 0.00 0.00 0.00 1.82
2817 2995 2.906389 TGGAGCATTTGGTGAGAGTAGT 59.094 45.455 0.00 0.00 0.00 2.73
2818 2996 3.265791 GTGGAGCATTTGGTGAGAGTAG 58.734 50.000 0.00 0.00 0.00 2.57
2819 2997 2.353704 CGTGGAGCATTTGGTGAGAGTA 60.354 50.000 0.00 0.00 0.00 2.59
2820 2998 1.609061 CGTGGAGCATTTGGTGAGAGT 60.609 52.381 0.00 0.00 0.00 3.24
2821 2999 1.081892 CGTGGAGCATTTGGTGAGAG 58.918 55.000 0.00 0.00 0.00 3.20
2822 3000 0.321564 CCGTGGAGCATTTGGTGAGA 60.322 55.000 0.00 0.00 0.00 3.27
2823 3001 0.321564 TCCGTGGAGCATTTGGTGAG 60.322 55.000 0.00 0.00 0.00 3.51
2824 3002 0.109532 TTCCGTGGAGCATTTGGTGA 59.890 50.000 0.00 0.00 0.00 4.02
2825 3003 1.176527 ATTCCGTGGAGCATTTGGTG 58.823 50.000 0.00 0.00 0.00 4.17
2826 3004 1.923356 AATTCCGTGGAGCATTTGGT 58.077 45.000 0.00 0.00 0.00 3.67
2827 3005 3.253230 GAAAATTCCGTGGAGCATTTGG 58.747 45.455 0.53 0.00 0.00 3.28
2828 3006 2.916716 CGAAAATTCCGTGGAGCATTTG 59.083 45.455 0.53 0.00 0.00 2.32
2829 3007 2.671070 GCGAAAATTCCGTGGAGCATTT 60.671 45.455 0.00 0.00 0.00 2.32
2830 3008 1.135402 GCGAAAATTCCGTGGAGCATT 60.135 47.619 0.00 0.00 0.00 3.56
2831 3009 0.451783 GCGAAAATTCCGTGGAGCAT 59.548 50.000 0.00 0.00 0.00 3.79
2832 3010 1.582610 GGCGAAAATTCCGTGGAGCA 61.583 55.000 0.00 0.00 0.00 4.26
2833 3011 1.136774 GGCGAAAATTCCGTGGAGC 59.863 57.895 0.00 0.00 0.00 4.70
2834 3012 0.878416 TTGGCGAAAATTCCGTGGAG 59.122 50.000 0.00 0.00 0.00 3.86
2835 3013 0.878416 CTTGGCGAAAATTCCGTGGA 59.122 50.000 0.00 0.00 0.00 4.02
2836 3014 0.596082 ACTTGGCGAAAATTCCGTGG 59.404 50.000 0.00 0.00 0.00 4.94
2837 3015 1.001815 ACACTTGGCGAAAATTCCGTG 60.002 47.619 0.00 0.00 0.00 4.94
2838 3016 1.314730 ACACTTGGCGAAAATTCCGT 58.685 45.000 0.00 0.00 0.00 4.69
2839 3017 2.050691 CAACACTTGGCGAAAATTCCG 58.949 47.619 0.00 0.00 0.00 4.30
2840 3018 3.363341 TCAACACTTGGCGAAAATTCC 57.637 42.857 0.00 0.00 0.00 3.01
2841 3019 4.803613 AGTTTCAACACTTGGCGAAAATTC 59.196 37.500 0.00 0.00 0.00 2.17
2842 3020 4.754322 AGTTTCAACACTTGGCGAAAATT 58.246 34.783 0.00 0.00 0.00 1.82
2843 3021 4.359706 GAGTTTCAACACTTGGCGAAAAT 58.640 39.130 0.00 0.00 0.00 1.82
2844 3022 3.729462 CGAGTTTCAACACTTGGCGAAAA 60.729 43.478 0.00 0.00 0.00 2.29
2845 3023 2.223157 CGAGTTTCAACACTTGGCGAAA 60.223 45.455 0.00 0.00 0.00 3.46
2846 3024 1.329292 CGAGTTTCAACACTTGGCGAA 59.671 47.619 0.00 0.00 0.00 4.70
2847 3025 0.934496 CGAGTTTCAACACTTGGCGA 59.066 50.000 0.00 0.00 0.00 5.54
2848 3026 0.041312 CCGAGTTTCAACACTTGGCG 60.041 55.000 0.00 0.00 40.79 5.69
2849 3027 3.845625 CCGAGTTTCAACACTTGGC 57.154 52.632 0.00 0.00 40.79 4.52
2851 3029 2.842208 TTGCCGAGTTTCAACACTTG 57.158 45.000 0.00 0.00 0.00 3.16
2852 3030 2.752903 AGTTTGCCGAGTTTCAACACTT 59.247 40.909 0.00 0.00 0.00 3.16
2853 3031 2.097466 CAGTTTGCCGAGTTTCAACACT 59.903 45.455 0.00 0.00 0.00 3.55
2854 3032 2.159435 ACAGTTTGCCGAGTTTCAACAC 60.159 45.455 0.00 0.00 0.00 3.32
2855 3033 2.088423 ACAGTTTGCCGAGTTTCAACA 58.912 42.857 0.00 0.00 0.00 3.33
2856 3034 2.096819 TGACAGTTTGCCGAGTTTCAAC 59.903 45.455 0.00 0.00 0.00 3.18
2857 3035 2.360844 TGACAGTTTGCCGAGTTTCAA 58.639 42.857 0.00 0.00 0.00 2.69
2858 3036 2.031258 TGACAGTTTGCCGAGTTTCA 57.969 45.000 0.00 0.00 0.00 2.69
2859 3037 2.540973 GGTTGACAGTTTGCCGAGTTTC 60.541 50.000 0.00 0.00 0.00 2.78
2860 3038 1.404035 GGTTGACAGTTTGCCGAGTTT 59.596 47.619 0.00 0.00 0.00 2.66
2861 3039 1.021968 GGTTGACAGTTTGCCGAGTT 58.978 50.000 0.00 0.00 0.00 3.01
2862 3040 0.107410 TGGTTGACAGTTTGCCGAGT 60.107 50.000 0.00 0.00 0.00 4.18
2863 3041 1.069022 CATGGTTGACAGTTTGCCGAG 60.069 52.381 0.00 0.00 0.00 4.63
2864 3042 0.950836 CATGGTTGACAGTTTGCCGA 59.049 50.000 0.00 0.00 0.00 5.54
2865 3043 0.667993 ACATGGTTGACAGTTTGCCG 59.332 50.000 0.00 0.00 0.00 5.69
2866 3044 2.888834 AACATGGTTGACAGTTTGCC 57.111 45.000 0.00 0.00 0.00 4.52
2867 3045 5.006261 GGTAAAAACATGGTTGACAGTTTGC 59.994 40.000 0.00 0.00 33.64 3.68
2868 3046 5.231147 CGGTAAAAACATGGTTGACAGTTTG 59.769 40.000 0.00 0.00 33.64 2.93
2869 3047 5.105675 ACGGTAAAAACATGGTTGACAGTTT 60.106 36.000 0.00 0.00 34.28 2.66
2870 3048 4.399934 ACGGTAAAAACATGGTTGACAGTT 59.600 37.500 0.00 0.00 0.00 3.16
2871 3049 3.949113 ACGGTAAAAACATGGTTGACAGT 59.051 39.130 0.00 2.68 0.00 3.55
2872 3050 4.561735 ACGGTAAAAACATGGTTGACAG 57.438 40.909 0.00 2.01 0.00 3.51
2873 3051 5.356190 TGTTACGGTAAAAACATGGTTGACA 59.644 36.000 0.00 0.00 30.88 3.58
2874 3052 5.819059 TGTTACGGTAAAAACATGGTTGAC 58.181 37.500 0.00 0.00 30.88 3.18
2875 3053 6.636562 ATGTTACGGTAAAAACATGGTTGA 57.363 33.333 0.00 0.00 43.01 3.18
2876 3054 7.861372 TGTTATGTTACGGTAAAAACATGGTTG 59.139 33.333 14.84 0.00 44.05 3.77
2877 3055 7.861872 GTGTTATGTTACGGTAAAAACATGGTT 59.138 33.333 19.16 0.00 44.05 3.67
2878 3056 7.013083 TGTGTTATGTTACGGTAAAAACATGGT 59.987 33.333 19.16 0.00 44.05 3.55
2879 3057 7.324135 GTGTGTTATGTTACGGTAAAAACATGG 59.676 37.037 19.16 0.00 44.05 3.66
2880 3058 7.324135 GGTGTGTTATGTTACGGTAAAAACATG 59.676 37.037 19.16 0.00 44.05 3.21
2881 3059 7.361894 GGTGTGTTATGTTACGGTAAAAACAT 58.638 34.615 19.16 15.68 45.66 2.71
2882 3060 6.238593 GGGTGTGTTATGTTACGGTAAAAACA 60.239 38.462 15.23 15.23 39.73 2.83
2883 3061 6.142139 GGGTGTGTTATGTTACGGTAAAAAC 58.858 40.000 1.47 8.24 0.00 2.43
2884 3062 5.240403 GGGGTGTGTTATGTTACGGTAAAAA 59.760 40.000 1.47 0.00 0.00 1.94
2885 3063 4.759183 GGGGTGTGTTATGTTACGGTAAAA 59.241 41.667 1.47 0.00 0.00 1.52
2886 3064 4.202398 TGGGGTGTGTTATGTTACGGTAAA 60.202 41.667 1.47 0.00 0.00 2.01
2887 3065 3.326006 TGGGGTGTGTTATGTTACGGTAA 59.674 43.478 0.00 0.00 0.00 2.85
2888 3066 2.902486 TGGGGTGTGTTATGTTACGGTA 59.098 45.455 0.00 0.00 0.00 4.02
2889 3067 1.698532 TGGGGTGTGTTATGTTACGGT 59.301 47.619 0.00 0.00 0.00 4.83
2890 3068 2.476126 TGGGGTGTGTTATGTTACGG 57.524 50.000 0.00 0.00 0.00 4.02
2891 3069 3.434299 GTCTTGGGGTGTGTTATGTTACG 59.566 47.826 0.00 0.00 0.00 3.18
2892 3070 4.391155 TGTCTTGGGGTGTGTTATGTTAC 58.609 43.478 0.00 0.00 0.00 2.50
2893 3071 4.708576 TGTCTTGGGGTGTGTTATGTTA 57.291 40.909 0.00 0.00 0.00 2.41
2894 3072 3.586470 TGTCTTGGGGTGTGTTATGTT 57.414 42.857 0.00 0.00 0.00 2.71
2895 3073 3.586470 TTGTCTTGGGGTGTGTTATGT 57.414 42.857 0.00 0.00 0.00 2.29
2896 3074 6.773976 ATATTTGTCTTGGGGTGTGTTATG 57.226 37.500 0.00 0.00 0.00 1.90
2897 3075 6.951198 TCAATATTTGTCTTGGGGTGTGTTAT 59.049 34.615 0.00 0.00 0.00 1.89
2898 3076 6.307776 TCAATATTTGTCTTGGGGTGTGTTA 58.692 36.000 0.00 0.00 0.00 2.41
2899 3077 5.144100 TCAATATTTGTCTTGGGGTGTGTT 58.856 37.500 0.00 0.00 0.00 3.32
2900 3078 4.735369 TCAATATTTGTCTTGGGGTGTGT 58.265 39.130 0.00 0.00 0.00 3.72
2901 3079 5.469479 GTTCAATATTTGTCTTGGGGTGTG 58.531 41.667 0.00 0.00 0.00 3.82
2902 3080 4.526650 GGTTCAATATTTGTCTTGGGGTGT 59.473 41.667 0.00 0.00 0.00 4.16
2903 3081 4.526262 TGGTTCAATATTTGTCTTGGGGTG 59.474 41.667 0.00 0.00 0.00 4.61
2904 3082 4.746466 TGGTTCAATATTTGTCTTGGGGT 58.254 39.130 0.00 0.00 0.00 4.95
2905 3083 5.163416 GGATGGTTCAATATTTGTCTTGGGG 60.163 44.000 0.00 0.00 0.00 4.96
2906 3084 5.163416 GGGATGGTTCAATATTTGTCTTGGG 60.163 44.000 0.00 0.00 0.00 4.12
2907 3085 5.421693 TGGGATGGTTCAATATTTGTCTTGG 59.578 40.000 0.00 0.00 0.00 3.61
2908 3086 6.528537 TGGGATGGTTCAATATTTGTCTTG 57.471 37.500 0.00 0.00 0.00 3.02
2909 3087 7.552050 TTTGGGATGGTTCAATATTTGTCTT 57.448 32.000 0.00 0.00 0.00 3.01
2910 3088 7.552050 TTTTGGGATGGTTCAATATTTGTCT 57.448 32.000 0.00 0.00 0.00 3.41
2911 3089 8.667463 CAATTTTGGGATGGTTCAATATTTGTC 58.333 33.333 0.00 0.00 0.00 3.18
2912 3090 8.162746 ACAATTTTGGGATGGTTCAATATTTGT 58.837 29.630 0.00 0.00 0.00 2.83
2913 3091 8.564509 ACAATTTTGGGATGGTTCAATATTTG 57.435 30.769 0.00 0.00 0.00 2.32
2914 3092 8.381636 TGACAATTTTGGGATGGTTCAATATTT 58.618 29.630 0.00 0.00 0.00 1.40
2915 3093 7.823799 GTGACAATTTTGGGATGGTTCAATATT 59.176 33.333 0.00 0.00 0.00 1.28
2916 3094 7.038445 TGTGACAATTTTGGGATGGTTCAATAT 60.038 33.333 0.00 0.00 0.00 1.28
2917 3095 6.268617 TGTGACAATTTTGGGATGGTTCAATA 59.731 34.615 0.00 0.00 0.00 1.90
2918 3096 5.071519 TGTGACAATTTTGGGATGGTTCAAT 59.928 36.000 0.00 0.00 0.00 2.57
2919 3097 4.406972 TGTGACAATTTTGGGATGGTTCAA 59.593 37.500 0.00 0.00 0.00 2.69
2920 3098 3.963374 TGTGACAATTTTGGGATGGTTCA 59.037 39.130 0.00 0.00 0.00 3.18
2921 3099 4.599047 TGTGACAATTTTGGGATGGTTC 57.401 40.909 0.00 0.00 0.00 3.62
2922 3100 5.365021 TTTGTGACAATTTTGGGATGGTT 57.635 34.783 0.00 0.00 0.00 3.67
2923 3101 5.565455 ATTTGTGACAATTTTGGGATGGT 57.435 34.783 0.00 0.00 0.00 3.55
2924 3102 6.700352 ACTATTTGTGACAATTTTGGGATGG 58.300 36.000 0.00 0.00 0.00 3.51
2925 3103 6.813152 GGACTATTTGTGACAATTTTGGGATG 59.187 38.462 0.00 0.00 0.00 3.51
2926 3104 6.070824 GGGACTATTTGTGACAATTTTGGGAT 60.071 38.462 0.00 0.00 0.00 3.85
2927 3105 5.245075 GGGACTATTTGTGACAATTTTGGGA 59.755 40.000 0.00 0.00 0.00 4.37
2928 3106 5.011533 TGGGACTATTTGTGACAATTTTGGG 59.988 40.000 0.00 0.00 0.00 4.12
2929 3107 6.015519 TCTGGGACTATTTGTGACAATTTTGG 60.016 38.462 0.00 0.00 0.00 3.28
2930 3108 6.980593 TCTGGGACTATTTGTGACAATTTTG 58.019 36.000 0.00 0.00 0.00 2.44
2931 3109 7.004086 TCTCTGGGACTATTTGTGACAATTTT 58.996 34.615 0.00 0.00 0.00 1.82
2932 3110 6.542821 TCTCTGGGACTATTTGTGACAATTT 58.457 36.000 0.00 0.00 0.00 1.82
2933 3111 6.126863 TCTCTGGGACTATTTGTGACAATT 57.873 37.500 0.00 0.00 0.00 2.32
2934 3112 5.762179 TCTCTGGGACTATTTGTGACAAT 57.238 39.130 0.00 0.00 0.00 2.71
2935 3113 5.762179 ATCTCTGGGACTATTTGTGACAA 57.238 39.130 0.00 0.00 0.00 3.18
2936 3114 5.013079 ACAATCTCTGGGACTATTTGTGACA 59.987 40.000 0.00 0.00 0.00 3.58
2937 3115 5.491982 ACAATCTCTGGGACTATTTGTGAC 58.508 41.667 0.00 0.00 0.00 3.67
2938 3116 5.762179 ACAATCTCTGGGACTATTTGTGA 57.238 39.130 0.00 0.00 0.00 3.58
2939 3117 6.644347 AGTACAATCTCTGGGACTATTTGTG 58.356 40.000 4.85 0.00 0.00 3.33
2940 3118 6.875972 AGTACAATCTCTGGGACTATTTGT 57.124 37.500 0.00 0.50 0.00 2.83
2941 3119 8.424918 ACATAGTACAATCTCTGGGACTATTTG 58.575 37.037 0.00 0.00 36.71 2.32
2942 3120 8.554490 ACATAGTACAATCTCTGGGACTATTT 57.446 34.615 0.00 0.00 36.71 1.40
2943 3121 9.303116 CTACATAGTACAATCTCTGGGACTATT 57.697 37.037 0.00 0.00 36.71 1.73
2944 3122 8.449625 ACTACATAGTACAATCTCTGGGACTAT 58.550 37.037 0.00 0.00 38.16 2.12
2945 3123 7.720074 CACTACATAGTACAATCTCTGGGACTA 59.280 40.741 0.00 0.00 34.13 2.59
2946 3124 6.547880 CACTACATAGTACAATCTCTGGGACT 59.452 42.308 0.00 0.00 34.13 3.85
2947 3125 6.546403 TCACTACATAGTACAATCTCTGGGAC 59.454 42.308 0.00 0.00 34.13 4.46
2948 3126 6.669631 TCACTACATAGTACAATCTCTGGGA 58.330 40.000 0.00 0.00 34.13 4.37
2949 3127 6.961360 TCACTACATAGTACAATCTCTGGG 57.039 41.667 0.00 0.00 34.13 4.45
2961 3139 9.618890 AACTGCATCAAATAATCACTACATAGT 57.381 29.630 0.00 0.00 36.90 2.12
2964 3142 8.959548 TCAAACTGCATCAAATAATCACTACAT 58.040 29.630 0.00 0.00 0.00 2.29
2965 3143 8.334263 TCAAACTGCATCAAATAATCACTACA 57.666 30.769 0.00 0.00 0.00 2.74
2966 3144 7.912250 CCTCAAACTGCATCAAATAATCACTAC 59.088 37.037 0.00 0.00 0.00 2.73
2967 3145 7.067372 CCCTCAAACTGCATCAAATAATCACTA 59.933 37.037 0.00 0.00 0.00 2.74
2968 3146 6.127535 CCCTCAAACTGCATCAAATAATCACT 60.128 38.462 0.00 0.00 0.00 3.41
2969 3147 6.038356 CCCTCAAACTGCATCAAATAATCAC 58.962 40.000 0.00 0.00 0.00 3.06
2970 3148 5.951148 TCCCTCAAACTGCATCAAATAATCA 59.049 36.000 0.00 0.00 0.00 2.57
2971 3149 6.455360 TCCCTCAAACTGCATCAAATAATC 57.545 37.500 0.00 0.00 0.00 1.75
2972 3150 7.427989 AATCCCTCAAACTGCATCAAATAAT 57.572 32.000 0.00 0.00 0.00 1.28
2973 3151 6.855763 AATCCCTCAAACTGCATCAAATAA 57.144 33.333 0.00 0.00 0.00 1.40
2974 3152 7.779326 TGATAATCCCTCAAACTGCATCAAATA 59.221 33.333 0.00 0.00 0.00 1.40
2975 3153 6.608405 TGATAATCCCTCAAACTGCATCAAAT 59.392 34.615 0.00 0.00 0.00 2.32
2976 3154 5.951148 TGATAATCCCTCAAACTGCATCAAA 59.049 36.000 0.00 0.00 0.00 2.69
2977 3155 5.508567 TGATAATCCCTCAAACTGCATCAA 58.491 37.500 0.00 0.00 0.00 2.57
2978 3156 5.114764 TGATAATCCCTCAAACTGCATCA 57.885 39.130 0.00 0.00 0.00 3.07
2979 3157 6.645790 AATGATAATCCCTCAAACTGCATC 57.354 37.500 0.00 0.00 0.00 3.91
2980 3158 7.727186 ACATAATGATAATCCCTCAAACTGCAT 59.273 33.333 0.00 0.00 0.00 3.96
2981 3159 7.062322 ACATAATGATAATCCCTCAAACTGCA 58.938 34.615 0.00 0.00 0.00 4.41
2982 3160 7.516198 ACATAATGATAATCCCTCAAACTGC 57.484 36.000 0.00 0.00 0.00 4.40
2983 3161 9.123902 TGAACATAATGATAATCCCTCAAACTG 57.876 33.333 0.00 0.00 0.00 3.16
2984 3162 9.699410 TTGAACATAATGATAATCCCTCAAACT 57.301 29.630 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.