>input_sequence_62709
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-------------------------------------------TTATAACAAAC--GGGCTTCTTAATTAGTCCTCCGTT
CTCCCGCGAGAAAAAAAAAATAGTCCTCCATCGATTCGCCGGCCGGGTTCTCAGATGAAGACTACTGCCTTCGATGGCAG
CTGCAGGTACATAAAAACGAGGGTTGTTTATTTGTGCTTTTATAAATAAAAAATTGAGCTGTTCATGCATGTATATTCCA
GTACGCCTTTTTCTTGCCTATTTACTACTGGCTCGTAGGGGTCTTCTTTGAGAGATCATTGGATGTTAATTTAGAATGTT
CATGTCATACACAGGACCAAACGCCAACCGAAGAATTCGACGAAGATGTTCTTATTTGTTTTCAAGCAGAAGGTTGGGTC
TCTAGTTTTTGGAAAAGATCACAAGGTTAGCATACCAAAGAAGATGTTCAGGTTATGTATTCGTGACGAGTATGGCATGA
GGGCGTTGGCTAAACCTACAGTTGTACTTAAGTCAACGGCACTGTACCACGAAATACAGCTTCGTGAGGGCAGATGGAGG
CTTGTCGCGTTCATTGACGACCACATGATCCATACATGGCCGATTTATAGGGAAAAATACGGACCAATTGGAAAAGCATC
CTGCACAATAAACAATGCGCTTAGAAAATACAGCGAGCGTCGACTTGAAGCTGGTTTGTTTTATTTGGTCAGGGACAAGA
AACGTTACTTGTCATTTACAACTAGGAGTCACCTCTACGGTGATGAATTCTTGAAGGACCTATGGAGAAAGAAAAGACTG
GAGCGAACCATGCAAAAACATAATCAAGAGTTATTAACGTGTTCTGCAAGTGTCTCCGAAACCAACATACCTGAAGACAG
AAACCTTTTCTCCATACTCATCAGGACATTGAGATTGTGTGGCATGAGACATGTGTTTTACTTGTTGCTTGTTATCTCCG
TAGCTTTGGCGATTGTATATCTGTGAAAGATCATTCATTGTATCTTGGTTGACTTTGTACTATATATGCATAAGGTGTGA
ATCGTATTTCTCTCTCTCATGGGTTCGCTAACGA----------------------------------------------
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>chr2B_1_TraesCS2B01G373800
CGCCAGCCGCATGCCGCTCCGGCGGAGGGCGGCGGCGGGGTTCCCCCGTTCTGCGGGGCGTTCTCTGGTGGAGGGAGGCT
CGCTCCCGCTCGTCATGGCAGCCATGGCGCCTGGTGGATTCAGCTCCATTGAGGTCCACCAAACACCACCCTGCAACACA
TTCACCTCGTCGACAAGGGGTCCGACCTCCGTTTCCGGGCCGCGTCCTCAAAACCCCATATCTGCCCACCGCACCACATC
AGGGCGCCATTAGGCAGGACTCAGATCCCTA-CTTGCCGCCCTCGCAGACCAGAGCCGCAACCATGTCTCCCCTCGCCTG
GAGTCACCGCGCCAGCTTCCCGACGCCTCTGTCCGCACCAGCCCTTGCGGGACGAGCGGATCCGCAGCCCGCAAAAAGCC
GATCGAGACCCAGCCTGTTCCTCCACCGTCACAGCGCCGCAACGCCGGCACCACGACCCCTCCGCGTCGCCCAACAGCTT
GCACTTCAGCACGGCTTGTGCCTCGGACTTCCATCGCCACCGCACGCGCACTGCAGGCCACTCCGATCCTCTGCTTCCCT
GTGCACAGTGACAACGCGCCCTCCGACGTGCAGCAGCCGTAGCACACGCCTCCACGACACCGCCACGCAACCTCGCGTGA
GCTCCCAGTCGCTGCGCCGCTGACGAACAGCCGCAGCAGCACGAACGGAACGGCCATGGCTCTGCGTGTACGCGTGTGCT
GTTCTGGTCTCTTGTGTTGGATGCGCCACGGCCCAACGGGCGTGCGTGTGTACGTTGGTTTTC--TAGTTTCAGTTTTCC
TGTTCGTACACGTCCTATGATTCTCCTATCACGCGCAGGCTTCCGTACAAAAAGAGAACTAACCTATCACGCGCAGGCTT
CCGTACCAGATCATTGATGTGCTTCTAATCAGACTCGTCTGATTGAAAGTAGGGGATCAATAGTCTGATTCGGGCGTATG
TGCCCTTCCTTAAATATTAGAGAGGCAAGAACAAAACGTGTTATTATAACAAAC--GGGCTTCTTAATTAGTCCTCCGTT
CTCCCGCGAGAAAAAAAAAATAGTCCTCCATCGATTCGCCGGCCGGGTTCTCAGATGAAGACTACTGCCTTCGATGGCAG
CTGCAGGTACATAAAAACGAGGGTTGTTTATTTGTGCTTTTATAAATAAAAAATTGAGCTGTTCATGCATGTATATTCCA
GTACGCCTTTTTCTTGCCTATTTACTACTGGCTCGTAGGGGTCTTCTTTGAGAGATCATTGGATGTTAATTTAGAATGTT
CATGTCATACACAGGACCAAACGCCAACCGAAGAATTCGACGAAGATGTTCTTATTTGTTTTCAAGCAGAAGGTTGGGTC
TCTAGTTTTTGGAAAAGATCACAAGGTTAGCATACCAAAGAAGATGTTCAGGTTATGTATTCGTGACGAGTATGGCATGA
GGGCGTTGGCTAAACCTACAGTTGTACTTAAGTCAACGGCACTGTACCACGAAATACAGCTTCGTGAGGGCAGATGGAGG
CTTGTCGCGTTCATTGACGACCACATGATCCATACATGGCCGATTTATAGGGAAAAATACGGACCAATTGGAAAAGCATC
CTGCACAATAAACAATGCGCTTAGAAAATACAGCGAGCGTCGACTTGAAGCTGGTTTGTTTTATTTGGTCAGGGACAAGA
AACGTTACTTGTCATTTACAACTAGGAGTCACCTCTACGGTGATGAATTCTTGAAGGACCTATGGAGAAAGAAAAGACTG
GAGCGAACCATGCAAAAACATAATCAAGAGTTATTAACGTGTTCTGCAAGTGTCTCCGAAACCAACATACCTGAAGACAG
AAACCTTTTCTCCATACTCATCAGGACATTGAGATTGTGTGGCATGAGACATGTGTTTTACTTGTTGCTTGTTATCTCCG
TAGCTTTGGCGATTGTATATCTGTGAAAGATCATTCATTGTATCTTGGTTGACTTTGTACTATATATGCATAAGGTGTGA
ATCGTATTTCTCTCTCTCATGGGTTCGCTAACGAATAATCGTGAAGTCATTGTGTAGTGATGTTATGATGTACTTGTACT
ACAGTCTGAGAATATATTTGGTGCTACCATGCTCTATACAATGATGGCACAACAAAACATTTGCCCAAAATTTCAAAAGA
AGAGAGTGTAGTTGGTACAAGCCATG---TACATCAGTAAAGCCTCTATTTCTCGTACAGATAGATTTTGCTTGTTTTGG
GAAGTTTAGGCCTCCGGGGAATTTTTTAGGAGGCACTAATGCAATGGCCGCGATTATCGAGTTTCCAGTGTACTCGACAA
AGCACAGAAAAAACTCGGCATTTCGTTTGCTAAGTTATGTTGTTGGCAAACAGGACTCGGCTGGACACACATCGACAATC
ATTTACTCCGCCGAGTTATTATCAGGCGCTCGACAAACACTTAAAT----------------------------------
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-------------------------------------------------AGTAATTGCCAAGTTTTGGCAAATGAGAACA
CGGCAAACCATCATGTTAGATGGAATGACTGTTTAATGGGCATTCATATGGCCAGACCTTTGTCGAGTCCTT------GT
CCGACCAAACTCCGCAACCTATCAACGAGTAGGGGCTCAACACGTGGCACGTCCTTTTGTTGAGTTGTCGTTTGTTGAAA
CTTGGCATAGCTTTGACGAGTGTGGTATTTCGCAGACCTTTGACGAGCAACTTCTCGACGCATGCACAAGCTTATGCCAA
GTTTTGGTCCGATGAAACTCTGCAATATGAGTAGATGCTAGCTTTTGCCGAGTGTGGTGCTCATCAAATATTAACAAAGC
TCATGCTTCTGCCAGGCATCCCTCTTTACCGAGTACTACTCTCACCAAATGCTCCACGGAATTTTCGCCAAGTGTTGAAA
CTCGGCAAACTGTCAACCATGTTTTTACCGTAACATAACACACCCCAAGACAAATATTGAACCATCCCAAAATTGTCACA
AATAGTCCCAGAGATTGTACTATGTAGTGATTATTTGATGCAGTTTGAGGGATTATCATTATGTTCAATTATGTTAATGA
TGTTGA
>chr2A_124
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-------------------------------------------CTCCATTGAGGTCCACCAAACACCAACCTGCAACACA
TTCACCTCGCCGACAAGAGGTCCGACCTCCGTTTCGGGGCCGCGTCCTCAAAACCCCATATCTGCCCA----------TC
AGGGTGCCATTAGGCAGGACCCAGATCCCGCTCTTGCCGCCCTCGCAGACCAGAGCCGCAGCCATGCCTCCCCTCGCCTG
GAGTCACCG-------------ACGCCTCTGTCCGCACCAGCCCTTGCGGGATGAGCGGATCTGCAGCCCGCAAACAGCG
GATCGAGACCCAGCCTGTTCCTCCACGGTCACCGCGCCGCAACGCCGGCACCACGACCCCTCCGCGTCGCCCAACATCTT
GCGCTTCAGCACGGCTCGTGCCTCGGACTTCCATCGCCACCGCACGCGCGCTGCAGGCCACCGATCG--TCTGCTTCCCT
GTGCACAGCGACAACGCGCCCTCCGACGTGCC------------------------------CCACGCAACCTCGCGTGA
GCTCCCGGTCGCTGCGCCGCTGACGAACAGCCGCAGCAGCACGAACGGAACGGCCATGGCTCTGCGTGTACGCGTGTGCT
GTTCTGGTCTCTTGTGTTGGATGCGCCACGGTCCCACGTGTGTG--------CGTTGGTTTTC--TAGTTTCAGTTTTCC
TGTTCGTACACGTCCTATGATTCTCCTATCACGCGCAGGCTTCCGTACAAAAAGAGAACTAACATATCACGCGCAGGCTT
CTGTACCAGATCCTTGATGTGCTTCTAATCCGACTCATCTGATTGAAAGTAACGGATCAATAGTCTGATTCGGGCGTATG
TGCCCTTCCTTAAATATTAGAGAGGCAAGAACAAAACGTGTTATTATAACACAAAAGGGCTTCTTAATTAGTCCTCCGTT
CTCCCCCGAGAAAAAA---ATAGTCCTCCATCGATTCGCCGGCCGGGTTCTCAGATGAAGACTACTGCCTTCGTTGGCAG
CTGCAGGTACATAAAAACAAGGGTTGTTTATTTGTGCTTTTATATTTTT----TTGAGCTGTTCATGCATGTATATTCCA
GTACGCCTTTTTCTTGCCTATTTACTACTGGCTCGTAGGGGTCTTCTTTGAGAGATCATTGAATGTTAATTTAGAATGTT
CATGTCATACACAGGACCAAACGCCAACCGAAGAATTCGACGAAGATGTTCTTATTTGTTTTCAAGCAGAAGGTTGGGTC
TCTAGTTTTAGGAAAAGATCACAAGGTTAGCAGACCAAAGAAGATGTTCAGGCTATGTATTCGTGACGAGTATGGCATGA
GGGCGTTGGCTAAACCTACAGTTGTACTTAAGTCAACGGCACTGTACCACGAAAGACAGCTTCATGAGGGCAGATGGAGG
CTTGTCACGTTCATTGACGACCACATGATCCATACATGGCCGATTTATAGGGAAAAATACGGACCAATTGAAAAAGCATC
CTGCACAATAAACAATGCGCTTAGAAAATACAGCGAGCGCCGACTTGAAGCTGGTTTGTTTTATTTGGTCAGTGACAAGA
AACGTTACTTGTCATTTACAACTAGGAGTCGCCTCCATGGTGATGAATTCTTGAAGGATCTATGGAGAAAGAAAAGACTG
GAGCGCACCATGCAAAAACATAATCAAGAGTTATTAACGTGTTCTGCAAGTGTCTCCGAAACCTACATACCGGAAGACAG
AAACCTTTTCTCCATACTCATCAGGACATTGAGATTGTGTGGCACGAGACATGTGTTTTACTTGTTGCTTGTTATTTCCT
TAGCTTTGGTGATTGTATATCTGTCAAAGATCATTCATTGTATATTGGTTGACTTT------------------------
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>chr2D_622
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--------------------------------------------------------------CCACGCAACCTCGCGTGA
GCTCCCAGTCGCTGCGCCGCTGACGAACAGCCGCAGCAGCACGAACGGAACGGCCATGGCTCTGCGTGTACGCGTGTGCT
GTTCTGGTCTCTTGTGTTGGATGCGCCACGGCCCCACGGGCGTGCGTGTGTACGTTGGTTTTCTATAGTTTCAGTTTTCC
TGTTCGTACACGTCCTATGATTCTCCTATCACGCGCAGGCTTCGGTACAAAAAGAGAACTAACCTATCACGCGCAGGCTT
CCGTACCAGATCATTGATGTGCTTCTAATCCGACTCGTCTGATTGAAAGTAGGGGGTCAATAGTCTGATTCGGGCGTATG
TGCCCTTCCTTAAATATTAGAGAGGCAAGAACAAAACGTGTTATTATA--ACAAAAGGGCTTCTTAATTAGTCCTCCGTT
CTCCCGCGAGAAAAAA---ATAGTCCTCCATCGATTCGCCCGGCGGGTTCTCAGATGAAGACTACTGCCTTAGATGGCAG
CTGCAGGTACATAAAAACGAGGGTTGTTTATTTGTGCTTTTATAAATAAAAAATTGAGCTGTTCATGCATGTATATTCCA
GTACGCCTTTTTCTTGCCTATTTACTACTGGCTCGTAGGGGTCTTCTTTGAGAGATCATTGGATGTTAATTTAGAATGTT
CATGTCATACACAGGACCAAATGCCAACCGAAGAATTCGACGAAGATGTTCTTATTTGTTTTCAAGCAGAAGGTTGGGTC
TCTAGTTTTTGGAAAAGATCACAAGGTTAGCAGACCAAAGAAGATGTTCAGGCTATGTATTCGTGACGAGTATGGCATGA
GGGCGTTGGCTAAACCTACAGTTGTACTTAAGTCAACGGCACTGTACCACGAAATACAGCTTCGTGAGGGCAGATGGAGG
CTTGTCACGTTCATTGACGACCACATGATCCATACATGGCCGATTTATAGGGAAAAATACGGACCAATTGGAAAAGCATC
CTGCACAATAAACAATGCGCTTAGAAAATACAGCGAGCGTCGACTTGAAGCTGGTTTGTTTTATTTGGTCAGGGACAAGA
AACGTTACTTGTCATTTACAACTAGGAGTCACCTGTACGGTGACGAATTCTTGAAGGGTCTATGGAGAAAGAAAAGACTG
GAGCGAACCATGCAAAAACATAATCAAGAGTTATTAACGTGTTCTGCAAGTGTCTCCGAAACCAATATACCTGAAGACAG
AAACCTTTTCTCCATACTCATCACGACATTGAGAGTGTGCGGCATGAGACATGTGTTTTACATGTTGCTTGTTATCTCCT
TAGCTTTGGCGATTGTATATCTGTGAAAGATCATTCATTGTATCTTGGTTGACTTAGTACTATATATGCATAAGGTGTGA
ATCGTATTTT--TCTCTCATGGGTTCGCTAACGAATAATCGTGAAGTCATTGTGTAGTGATGTTATGATGTACTTGTACT
ACAGTCTGAGAATATATTTGGTGCTACCATGCTCTATACAATGATGGCACAACAAAACATTTGCCCAAAATTTCAAAAGA
AGAGAGTGTGGTTGGTACAAGCCATGTACTACATCAGTAAAGCCTCTATTTCTCATATAGATAGATTTTGCTTGTTTTGG
GTAGTTTAGGCTTCCGGGGAATTTTTTAGGAGGCACTAATGCAATGGCCACAATTATCGAGTTTCCAGTGTACTCGGCAA
AGCACAGAAAAAACCCGGCATTTCGTTTGCTAAGTTCTGTTCTTGGCAAACAGGACTCGGCTGGACACACATCGACAATC
ATTTACTCCGCCGAGTTATTATCAGGCACTCGACAAACACTTAAATAGTACTCCCTCCGTTTCAAAATATAAATCTTTGT
AGAAATTTCAATACGTGACTACATACGGAGCAAAATGAATGAATCTACACTCTAAAATATGTCTACATACATCCGTATGT
TGTATACCATTTGAAATGTCTAAAAAAACTTATATTTTGGAATGAAGGAAGTAATTGCCAAGTTTTGGCAAATGAGAACA
CGGCAAACCATCATGTTAGATGGAATGACCGTTTAATGGGCATTCATGTGGCCAGACCTTTGTCGAGTCCTCGTCCTCGT
CCGACCAAACTCGGCAACCCATCAACGAGTAGGGGCTCAACACGTGGCACGTCCGTTTGTTGAGTTGTTGTTTGTTGAAA
CTTGGCATAGCTTTGACGAGTGTGGTATTCCGCAGAGCTTTGACGAGCAACTTCTCAACGTATGCACAAGCTTATGCCAA
GTTTTGGTCCGATGAAACTCTCCAATACGAGTAGATGCTAGATTT-----------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------S-----------
---------S-------S-----------------S--------------------------------SSSSSSSSSS--
----S---------------S--------SS-----------------------------S-----S-------------
---------SSSSSSSSSSSSS------------------------------S---------S------------S---S
--------------------------S-----S-------------------------------------------S---
--S-------------S--------------------------------S-----------SSSSSSSS-----------
--------S----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
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----------------------------------S---------------------------------------------
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------------------------------S-------------------------------------------------
---------------------------------------------------S-S--------------------------
----------------SSS-------------------------------------------------------------
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--------------------------------S-------------------S---------------------------
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------S-------------------------------------------------------------------------
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----------------------------------------------------------S---------------------
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-------------------------------------------------------------------------------S
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---------SSS--------------------------------------------------------------------
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---------S--------------------------------------------S--S----------------------
-S---------S-------------------------------------S-S------------------------S---
--------------S---------------------S----S--------------------------------------
---------------------------S----------------------------------------------------
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-----------------------------S-----------------S-----------------------S--------
------------S------S----------------------------------S-------------S-----------
-----------------------------S------S-------------------S---S-------------------
---------------------S-----S-------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_149
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-------------------------------------------------TGAGGTCCACCAAACACCAC-----------
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>reverse_1527
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------GCGTTCATTGACGACCACAT------------------------------------------------------
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>forward_230
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--------------------------------------------------AAACCCCATATCTGCCCACC----------
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>reverse_2010
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---------CTCTCTCTCATGGGTTCGCT---------------------------------------------------
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>forward_270
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----------TAGGCAGGACTCAGATCCCT--------------------------------------------------
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>reverse_2011
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----------TCTCTCTCATGGGTTCGCTAAC------------------------------------------------
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>forward_569
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----------------------------------------------------------------------CTGCTTCCCT
GTGCACAGT-----------------------------------------------------------------------
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>reverse_2688
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-----------------------------------------------ATGGCCAGACCTTTGTCGAG-------------
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