Multiple sequence alignment - TraesCS2B01G368300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G368300 chr2B 100.000 2210 0 0 1 2210 525523275 525521066 0.000000e+00 4082.0
1 TraesCS2B01G368300 chr2B 97.748 222 3 1 1 220 525560137 525560358 4.450000e-102 381.0
2 TraesCS2B01G368300 chr2B 95.798 119 4 1 1 119 690994643 690994760 8.050000e-45 191.0
3 TraesCS2B01G368300 chr2B 98.131 107 2 0 334 440 525569282 525569176 1.040000e-43 187.0
4 TraesCS2B01G368300 chr2B 94.017 117 4 2 228 342 525628337 525628222 8.110000e-40 174.0
5 TraesCS2B01G368300 chr2B 83.893 149 7 9 424 555 525569136 525568988 2.300000e-25 126.0
6 TraesCS2B01G368300 chr2B 85.333 75 11 0 1276 1350 571215072 571214998 6.540000e-11 78.7
7 TraesCS2B01G368300 chr2D 88.027 1946 139 44 281 2210 446261175 446259308 0.000000e+00 2217.0
8 TraesCS2B01G368300 chr2A 90.993 1188 69 20 281 1446 589693530 589692359 0.000000e+00 1567.0
9 TraesCS2B01G368300 chr2A 91.581 582 31 8 1639 2210 589692214 589691641 0.000000e+00 787.0
10 TraesCS2B01G368300 chr2A 97.778 45 1 0 1497 1541 589692344 589692300 6.540000e-11 78.7
11 TraesCS2B01G368300 chr3B 96.129 155 4 1 75 227 228211095 228210941 3.640000e-63 252.0
12 TraesCS2B01G368300 chr3B 96.639 119 3 1 1 119 814605329 814605212 1.730000e-46 196.0
13 TraesCS2B01G368300 chr3B 94.167 120 5 2 1 119 228211256 228211138 4.850000e-42 182.0
14 TraesCS2B01G368300 chr3A 97.297 148 1 2 75 220 94165134 94164988 4.710000e-62 248.0
15 TraesCS2B01G368300 chr3A 95.798 119 4 1 1 119 94165294 94165177 8.050000e-45 191.0
16 TraesCS2B01G368300 chr1B 96.078 153 4 1 77 227 323956154 323956002 4.710000e-62 248.0
17 TraesCS2B01G368300 chr1B 95.000 120 5 1 1 119 323956318 323956199 1.040000e-43 187.0
18 TraesCS2B01G368300 chr6B 94.969 159 5 2 75 231 695449591 695449434 1.690000e-61 246.0
19 TraesCS2B01G368300 chr6B 94.872 156 6 1 75 228 516261520 516261675 2.190000e-60 243.0
20 TraesCS2B01G368300 chr7B 94.839 155 6 1 75 227 436089467 436089621 7.880000e-60 241.0
21 TraesCS2B01G368300 chr7B 94.839 155 6 1 75 227 614417311 614417465 7.880000e-60 241.0
22 TraesCS2B01G368300 chr5B 94.839 155 6 1 75 227 611486812 611486658 7.880000e-60 241.0
23 TraesCS2B01G368300 chrUn 95.798 119 4 1 1 119 352658007 352658124 8.050000e-45 191.0
24 TraesCS2B01G368300 chrUn 95.798 119 4 1 1 119 449510347 449510230 8.050000e-45 191.0
25 TraesCS2B01G368300 chrUn 94.118 119 5 2 1 119 47863820 47863704 1.740000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G368300 chr2B 525521066 525523275 2209 True 4082.0 4082 100.000000 1 2210 1 chr2B.!!$R1 2209
1 TraesCS2B01G368300 chr2D 446259308 446261175 1867 True 2217.0 2217 88.027000 281 2210 1 chr2D.!!$R1 1929
2 TraesCS2B01G368300 chr2A 589691641 589693530 1889 True 810.9 1567 93.450667 281 2210 3 chr2A.!!$R1 1929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 599 0.031449 CCTAGCTAGAAGCCAGCGAC 59.969 60.0 22.7 0.0 43.77 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 1746 0.114364 TCAGCCTCTACCTCACACCA 59.886 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.559958 AAGAAAGTATTATTGCATCAAGAAACG 57.440 29.630 0.00 0.00 28.49 3.60
46 47 8.730680 AGAAAGTATTATTGCATCAAGAAACGT 58.269 29.630 0.00 0.00 28.49 3.99
47 48 8.895932 AAAGTATTATTGCATCAAGAAACGTC 57.104 30.769 0.00 0.00 28.49 4.34
48 49 7.016361 AGTATTATTGCATCAAGAAACGTCC 57.984 36.000 0.00 0.00 28.49 4.79
49 50 2.900122 ATTGCATCAAGAAACGTCCG 57.100 45.000 0.00 0.00 0.00 4.79
50 51 1.872388 TTGCATCAAGAAACGTCCGA 58.128 45.000 0.00 0.00 0.00 4.55
51 52 1.872388 TGCATCAAGAAACGTCCGAA 58.128 45.000 0.00 0.00 0.00 4.30
52 53 1.798223 TGCATCAAGAAACGTCCGAAG 59.202 47.619 0.00 0.00 0.00 3.79
53 54 2.066262 GCATCAAGAAACGTCCGAAGA 58.934 47.619 0.00 0.00 0.00 2.87
54 55 2.478894 GCATCAAGAAACGTCCGAAGAA 59.521 45.455 0.00 0.00 0.00 2.52
55 56 3.059188 GCATCAAGAAACGTCCGAAGAAA 60.059 43.478 0.00 0.00 0.00 2.52
56 57 4.455124 CATCAAGAAACGTCCGAAGAAAC 58.545 43.478 0.00 0.00 0.00 2.78
57 58 3.788937 TCAAGAAACGTCCGAAGAAACT 58.211 40.909 0.00 0.00 0.00 2.66
58 59 4.186159 TCAAGAAACGTCCGAAGAAACTT 58.814 39.130 0.00 0.00 0.00 2.66
59 60 4.632688 TCAAGAAACGTCCGAAGAAACTTT 59.367 37.500 0.00 0.00 0.00 2.66
60 61 5.122711 TCAAGAAACGTCCGAAGAAACTTTT 59.877 36.000 0.00 0.00 0.00 2.27
61 62 5.556355 AGAAACGTCCGAAGAAACTTTTT 57.444 34.783 0.00 0.00 0.00 1.94
86 87 9.462174 TTTTGAAGCACTGAAGTATTATTGTTG 57.538 29.630 0.00 0.00 0.00 3.33
87 88 7.744087 TGAAGCACTGAAGTATTATTGTTGT 57.256 32.000 0.00 0.00 0.00 3.32
88 89 7.806690 TGAAGCACTGAAGTATTATTGTTGTC 58.193 34.615 0.00 0.00 0.00 3.18
89 90 6.408858 AGCACTGAAGTATTATTGTTGTCG 57.591 37.500 0.00 0.00 0.00 4.35
90 91 6.163476 AGCACTGAAGTATTATTGTTGTCGA 58.837 36.000 0.00 0.00 0.00 4.20
91 92 6.818644 AGCACTGAAGTATTATTGTTGTCGAT 59.181 34.615 0.00 0.00 0.00 3.59
92 93 6.901887 GCACTGAAGTATTATTGTTGTCGATG 59.098 38.462 0.00 0.00 0.00 3.84
93 94 7.401860 CACTGAAGTATTATTGTTGTCGATGG 58.598 38.462 0.00 0.00 0.00 3.51
94 95 7.277760 CACTGAAGTATTATTGTTGTCGATGGA 59.722 37.037 0.00 0.00 0.00 3.41
95 96 7.492669 ACTGAAGTATTATTGTTGTCGATGGAG 59.507 37.037 0.00 0.00 0.00 3.86
96 97 7.327975 TGAAGTATTATTGTTGTCGATGGAGT 58.672 34.615 0.00 0.00 0.00 3.85
97 98 7.491372 TGAAGTATTATTGTTGTCGATGGAGTC 59.509 37.037 0.00 0.00 0.00 3.36
98 99 6.873997 AGTATTATTGTTGTCGATGGAGTCA 58.126 36.000 0.00 0.00 0.00 3.41
99 100 6.980978 AGTATTATTGTTGTCGATGGAGTCAG 59.019 38.462 0.00 0.00 0.00 3.51
100 101 3.685139 ATTGTTGTCGATGGAGTCAGT 57.315 42.857 0.00 0.00 0.00 3.41
101 102 3.469008 TTGTTGTCGATGGAGTCAGTT 57.531 42.857 0.00 0.00 0.00 3.16
102 103 3.026630 TGTTGTCGATGGAGTCAGTTC 57.973 47.619 0.00 0.00 0.00 3.01
103 104 2.364002 TGTTGTCGATGGAGTCAGTTCA 59.636 45.455 0.00 0.00 0.00 3.18
104 105 3.181470 TGTTGTCGATGGAGTCAGTTCAA 60.181 43.478 0.00 0.00 0.00 2.69
105 106 3.744238 TGTCGATGGAGTCAGTTCAAA 57.256 42.857 0.00 0.00 0.00 2.69
106 107 4.271696 TGTCGATGGAGTCAGTTCAAAT 57.728 40.909 0.00 0.00 0.00 2.32
107 108 4.641396 TGTCGATGGAGTCAGTTCAAATT 58.359 39.130 0.00 0.00 0.00 1.82
108 109 5.063204 TGTCGATGGAGTCAGTTCAAATTT 58.937 37.500 0.00 0.00 0.00 1.82
109 110 6.227522 TGTCGATGGAGTCAGTTCAAATTTA 58.772 36.000 0.00 0.00 0.00 1.40
110 111 6.368791 TGTCGATGGAGTCAGTTCAAATTTAG 59.631 38.462 0.00 0.00 0.00 1.85
111 112 6.369065 GTCGATGGAGTCAGTTCAAATTTAGT 59.631 38.462 0.00 0.00 0.00 2.24
112 113 6.934645 TCGATGGAGTCAGTTCAAATTTAGTT 59.065 34.615 0.00 0.00 0.00 2.24
113 114 8.092068 TCGATGGAGTCAGTTCAAATTTAGTTA 58.908 33.333 0.00 0.00 0.00 2.24
114 115 8.883731 CGATGGAGTCAGTTCAAATTTAGTTAT 58.116 33.333 0.00 0.00 0.00 1.89
132 133 9.661563 TTTAGTTATTATTGTTGTCGATGGAGT 57.338 29.630 0.00 0.00 0.00 3.85
133 134 7.772332 AGTTATTATTGTTGTCGATGGAGTC 57.228 36.000 0.00 0.00 0.00 3.36
134 135 7.327975 AGTTATTATTGTTGTCGATGGAGTCA 58.672 34.615 0.00 0.00 0.00 3.41
135 136 7.492669 AGTTATTATTGTTGTCGATGGAGTCAG 59.507 37.037 0.00 0.00 0.00 3.51
136 137 3.685139 ATTGTTGTCGATGGAGTCAGT 57.315 42.857 0.00 0.00 0.00 3.41
137 138 3.469008 TTGTTGTCGATGGAGTCAGTT 57.531 42.857 0.00 0.00 0.00 3.16
138 139 2.754472 TGTTGTCGATGGAGTCAGTTG 58.246 47.619 0.00 0.00 0.00 3.16
139 140 2.364002 TGTTGTCGATGGAGTCAGTTGA 59.636 45.455 0.00 0.00 0.00 3.18
140 141 3.181470 TGTTGTCGATGGAGTCAGTTGAA 60.181 43.478 0.00 0.00 0.00 2.69
141 142 3.961480 TGTCGATGGAGTCAGTTGAAT 57.039 42.857 0.00 0.00 0.00 2.57
142 143 4.271696 TGTCGATGGAGTCAGTTGAATT 57.728 40.909 0.00 0.00 0.00 2.17
143 144 5.400066 TGTCGATGGAGTCAGTTGAATTA 57.600 39.130 0.00 0.00 0.00 1.40
144 145 5.977635 TGTCGATGGAGTCAGTTGAATTAT 58.022 37.500 0.00 0.00 0.00 1.28
145 146 6.406370 TGTCGATGGAGTCAGTTGAATTATT 58.594 36.000 0.00 0.00 0.00 1.40
146 147 7.552459 TGTCGATGGAGTCAGTTGAATTATTA 58.448 34.615 0.00 0.00 0.00 0.98
147 148 7.706607 TGTCGATGGAGTCAGTTGAATTATTAG 59.293 37.037 0.00 0.00 0.00 1.73
148 149 7.707035 GTCGATGGAGTCAGTTGAATTATTAGT 59.293 37.037 0.00 0.00 0.00 2.24
149 150 7.921214 TCGATGGAGTCAGTTGAATTATTAGTC 59.079 37.037 0.00 0.00 0.00 2.59
150 151 7.706607 CGATGGAGTCAGTTGAATTATTAGTCA 59.293 37.037 0.00 0.00 0.00 3.41
151 152 9.383519 GATGGAGTCAGTTGAATTATTAGTCAA 57.616 33.333 0.00 0.00 36.13 3.18
152 153 9.739276 ATGGAGTCAGTTGAATTATTAGTCAAA 57.261 29.630 0.00 0.00 39.75 2.69
153 154 9.739276 TGGAGTCAGTTGAATTATTAGTCAAAT 57.261 29.630 0.00 0.00 39.75 2.32
177 178 6.987403 TTGGTTGAAATTTATATAGGGGCC 57.013 37.500 0.00 0.00 0.00 5.80
178 179 5.399113 TGGTTGAAATTTATATAGGGGCCC 58.601 41.667 17.12 17.12 0.00 5.80
179 180 5.103043 TGGTTGAAATTTATATAGGGGCCCA 60.103 40.000 27.72 11.59 0.00 5.36
180 181 6.022958 GGTTGAAATTTATATAGGGGCCCAT 58.977 40.000 27.72 21.79 0.00 4.00
181 182 6.070824 GGTTGAAATTTATATAGGGGCCCATG 60.071 42.308 27.72 0.00 0.00 3.66
182 183 6.226272 TGAAATTTATATAGGGGCCCATGT 57.774 37.500 27.72 19.13 0.00 3.21
183 184 6.252995 TGAAATTTATATAGGGGCCCATGTC 58.747 40.000 27.72 12.54 0.00 3.06
184 185 5.876691 AATTTATATAGGGGCCCATGTCA 57.123 39.130 27.72 6.50 0.00 3.58
185 186 4.650972 TTTATATAGGGGCCCATGTCAC 57.349 45.455 27.72 4.38 0.00 3.67
186 187 1.372501 ATATAGGGGCCCATGTCACC 58.627 55.000 27.72 3.49 0.00 4.02
187 188 1.125093 TATAGGGGCCCATGTCACCG 61.125 60.000 27.72 0.00 0.00 4.94
188 189 2.907482 ATAGGGGCCCATGTCACCGA 62.907 60.000 27.72 0.00 0.00 4.69
189 190 4.489771 GGGGCCCATGTCACCGAG 62.490 72.222 26.86 0.00 0.00 4.63
190 191 3.717294 GGGCCCATGTCACCGAGT 61.717 66.667 19.95 0.00 0.00 4.18
191 192 2.351276 GGCCCATGTCACCGAGTT 59.649 61.111 0.00 0.00 0.00 3.01
192 193 1.745489 GGCCCATGTCACCGAGTTC 60.745 63.158 0.00 0.00 0.00 3.01
193 194 2.100631 GCCCATGTCACCGAGTTCG 61.101 63.158 0.00 0.00 39.44 3.95
194 195 2.100631 CCCATGTCACCGAGTTCGC 61.101 63.158 0.00 0.00 38.18 4.70
195 196 2.100631 CCATGTCACCGAGTTCGCC 61.101 63.158 0.00 0.00 38.18 5.54
196 197 1.079819 CATGTCACCGAGTTCGCCT 60.080 57.895 0.00 0.00 38.18 5.52
197 198 0.172578 CATGTCACCGAGTTCGCCTA 59.827 55.000 0.00 0.00 38.18 3.93
198 199 0.456221 ATGTCACCGAGTTCGCCTAG 59.544 55.000 0.00 0.00 38.18 3.02
199 200 1.139095 GTCACCGAGTTCGCCTAGG 59.861 63.158 3.67 3.67 41.46 3.02
200 201 2.050350 TCACCGAGTTCGCCTAGGG 61.050 63.158 11.72 0.44 40.09 3.53
201 202 3.459063 ACCGAGTTCGCCTAGGGC 61.459 66.667 11.72 1.76 46.75 5.19
211 212 2.579878 GCCTAGGGCCTTCCAAAAC 58.420 57.895 13.45 0.00 44.06 2.43
212 213 0.251608 GCCTAGGGCCTTCCAAAACA 60.252 55.000 13.45 0.00 44.06 2.83
213 214 1.545841 CCTAGGGCCTTCCAAAACAC 58.454 55.000 13.45 0.00 38.24 3.32
214 215 1.203001 CCTAGGGCCTTCCAAAACACA 60.203 52.381 13.45 0.00 38.24 3.72
215 216 2.162681 CTAGGGCCTTCCAAAACACAG 58.837 52.381 13.45 0.00 38.24 3.66
216 217 0.469892 AGGGCCTTCCAAAACACAGG 60.470 55.000 0.00 0.00 38.24 4.00
217 218 1.471829 GGGCCTTCCAAAACACAGGG 61.472 60.000 0.84 0.00 35.00 4.45
218 219 1.367471 GCCTTCCAAAACACAGGGC 59.633 57.895 0.00 0.00 0.00 5.19
219 220 2.049435 CCTTCCAAAACACAGGGCC 58.951 57.895 0.00 0.00 0.00 5.80
220 221 0.758685 CCTTCCAAAACACAGGGCCA 60.759 55.000 6.18 0.00 0.00 5.36
221 222 0.675633 CTTCCAAAACACAGGGCCAG 59.324 55.000 6.18 0.00 0.00 4.85
222 223 1.398958 TTCCAAAACACAGGGCCAGC 61.399 55.000 6.18 0.00 0.00 4.85
223 224 2.132996 CCAAAACACAGGGCCAGCA 61.133 57.895 6.18 0.00 0.00 4.41
224 225 1.067916 CAAAACACAGGGCCAGCAC 59.932 57.895 6.18 0.00 0.00 4.40
225 226 1.076044 AAAACACAGGGCCAGCACT 60.076 52.632 6.18 0.00 0.00 4.40
240 241 2.743636 GCACTGTGCTCTTAGGTACA 57.256 50.000 24.68 0.00 40.96 2.90
241 242 3.252974 GCACTGTGCTCTTAGGTACAT 57.747 47.619 24.68 0.00 40.96 2.29
242 243 2.932614 GCACTGTGCTCTTAGGTACATG 59.067 50.000 24.68 0.00 40.96 3.21
243 244 3.525537 CACTGTGCTCTTAGGTACATGG 58.474 50.000 0.00 0.00 32.00 3.66
244 245 3.195610 CACTGTGCTCTTAGGTACATGGA 59.804 47.826 0.00 0.00 32.00 3.41
245 246 3.449018 ACTGTGCTCTTAGGTACATGGAG 59.551 47.826 0.00 1.72 32.00 3.86
246 247 3.701542 CTGTGCTCTTAGGTACATGGAGA 59.298 47.826 13.75 6.06 32.00 3.71
247 248 4.290093 TGTGCTCTTAGGTACATGGAGAT 58.710 43.478 13.75 0.00 0.00 2.75
248 249 5.454966 TGTGCTCTTAGGTACATGGAGATA 58.545 41.667 13.75 2.73 0.00 1.98
249 250 5.536538 TGTGCTCTTAGGTACATGGAGATAG 59.463 44.000 13.75 0.00 0.00 2.08
250 251 5.770663 GTGCTCTTAGGTACATGGAGATAGA 59.229 44.000 13.75 0.00 0.00 1.98
251 252 6.265649 GTGCTCTTAGGTACATGGAGATAGAA 59.734 42.308 13.75 0.00 0.00 2.10
252 253 6.265649 TGCTCTTAGGTACATGGAGATAGAAC 59.734 42.308 13.75 0.19 0.00 3.01
253 254 6.492087 GCTCTTAGGTACATGGAGATAGAACT 59.508 42.308 13.75 0.00 0.00 3.01
254 255 7.523052 GCTCTTAGGTACATGGAGATAGAACTG 60.523 44.444 13.75 0.00 0.00 3.16
255 256 6.778069 TCTTAGGTACATGGAGATAGAACTGG 59.222 42.308 0.00 0.00 0.00 4.00
256 257 3.643792 AGGTACATGGAGATAGAACTGGC 59.356 47.826 0.00 0.00 0.00 4.85
257 258 3.388024 GGTACATGGAGATAGAACTGGCA 59.612 47.826 0.00 0.00 0.00 4.92
258 259 4.141711 GGTACATGGAGATAGAACTGGCAA 60.142 45.833 0.00 0.00 0.00 4.52
259 260 4.785346 ACATGGAGATAGAACTGGCAAT 57.215 40.909 0.00 0.00 0.00 3.56
260 261 5.121380 ACATGGAGATAGAACTGGCAATT 57.879 39.130 0.00 0.00 0.00 2.32
261 262 5.513233 ACATGGAGATAGAACTGGCAATTT 58.487 37.500 0.00 0.00 0.00 1.82
262 263 5.359009 ACATGGAGATAGAACTGGCAATTTG 59.641 40.000 0.00 0.00 0.00 2.32
263 264 4.272489 TGGAGATAGAACTGGCAATTTGG 58.728 43.478 0.00 0.00 0.00 3.28
264 265 3.633986 GGAGATAGAACTGGCAATTTGGG 59.366 47.826 0.00 0.00 0.00 4.12
265 266 4.526970 GAGATAGAACTGGCAATTTGGGA 58.473 43.478 0.00 0.00 0.00 4.37
266 267 5.134725 AGATAGAACTGGCAATTTGGGAT 57.865 39.130 0.00 0.00 0.00 3.85
267 268 6.266131 AGATAGAACTGGCAATTTGGGATA 57.734 37.500 0.00 0.00 0.00 2.59
268 269 6.064717 AGATAGAACTGGCAATTTGGGATAC 58.935 40.000 0.00 0.00 0.00 2.24
291 292 7.556733 ACCAGTTTACGAATTAGAAACACAA 57.443 32.000 10.34 0.00 35.88 3.33
298 299 5.584442 ACGAATTAGAAACACAAAACCCAC 58.416 37.500 0.00 0.00 0.00 4.61
299 300 4.673311 CGAATTAGAAACACAAAACCCACG 59.327 41.667 0.00 0.00 0.00 4.94
323 327 5.284660 GCAAAATAAACTGCTGAAGACATCG 59.715 40.000 0.00 0.00 35.62 3.84
354 358 2.191786 CTACCACCCATCACCGCCAA 62.192 60.000 0.00 0.00 0.00 4.52
382 387 2.951642 TCTTGCTCTTTGGTTCTTGGTG 59.048 45.455 0.00 0.00 0.00 4.17
388 393 2.023673 CTTTGGTTCTTGGTGCACTCA 58.976 47.619 17.98 10.37 0.00 3.41
416 421 5.138800 GCAATGCAGAAACAATATTGCTG 57.861 39.130 15.48 14.61 46.03 4.41
423 428 4.002982 AGAAACAATATTGCTGCGTCTCA 58.997 39.130 15.48 0.00 0.00 3.27
439 444 1.816835 TCTCAGTCATACGGTCGCTTT 59.183 47.619 0.00 0.00 0.00 3.51
440 445 1.920574 CTCAGTCATACGGTCGCTTTG 59.079 52.381 0.00 0.00 0.00 2.77
458 463 5.163953 CGCTTTGACTCAACAATATTCGACT 60.164 40.000 0.00 0.00 0.00 4.18
474 479 1.204228 GACTTGAACACGCGACGACA 61.204 55.000 15.93 4.80 0.00 4.35
478 502 0.872451 TGAACACGCGACGACAACAT 60.872 50.000 15.93 0.00 0.00 2.71
497 521 4.460263 ACATAACACACCGCCATTGATAT 58.540 39.130 0.00 0.00 0.00 1.63
498 522 5.616270 ACATAACACACCGCCATTGATATA 58.384 37.500 0.00 0.00 0.00 0.86
552 578 3.510360 TCCAGTTCTTTCTAAGACTCCCG 59.490 47.826 0.00 0.00 37.23 5.14
564 590 1.845143 AGACTCCCGTCCTAGCTAGAA 59.155 52.381 22.70 0.00 41.16 2.10
573 599 0.031449 CCTAGCTAGAAGCCAGCGAC 59.969 60.000 22.70 0.00 43.77 5.19
619 646 2.511373 CGCAGCCGCAGAACCATA 60.511 61.111 0.00 0.00 38.40 2.74
620 647 2.813179 CGCAGCCGCAGAACCATAC 61.813 63.158 0.00 0.00 38.40 2.39
634 662 1.647084 CATACTAAAAGGGCGCCGC 59.353 57.895 22.54 13.90 0.00 6.53
663 691 4.007644 CGTGCAGGACCAGAGCCA 62.008 66.667 0.00 0.00 0.00 4.75
666 694 4.025858 GCAGGACCAGAGCCAGCA 62.026 66.667 0.00 0.00 37.79 4.41
680 708 3.233355 CAGCAGGTGGTGGTCTTAC 57.767 57.895 1.04 0.00 39.67 2.34
681 709 0.321653 CAGCAGGTGGTGGTCTTACC 60.322 60.000 1.04 0.00 39.67 2.85
750 778 2.747855 GCCCGCTCTTTCCACAGG 60.748 66.667 0.00 0.00 0.00 4.00
753 781 1.078848 CCGCTCTTTCCACAGGAGG 60.079 63.158 0.00 0.00 31.21 4.30
756 784 0.035915 GCTCTTTCCACAGGAGGTCC 60.036 60.000 0.00 0.00 31.21 4.46
810 838 0.041135 CGTAGAGGGCGACGAAGATC 60.041 60.000 0.00 0.00 44.41 2.75
840 868 1.296715 GGCTATCCCGGCGATGATT 59.703 57.895 9.30 0.00 31.92 2.57
842 870 1.139058 GGCTATCCCGGCGATGATTAT 59.861 52.381 9.30 0.00 31.92 1.28
846 874 3.634397 ATCCCGGCGATGATTATGAAT 57.366 42.857 9.30 0.00 0.00 2.57
849 877 2.813754 CCCGGCGATGATTATGAATGTT 59.186 45.455 9.30 0.00 0.00 2.71
879 907 3.075005 ACCCACCCCACGATCGAG 61.075 66.667 24.34 14.64 0.00 4.04
1074 1102 4.711949 AGCACGCCTTGGCAGGAG 62.712 66.667 12.45 1.60 44.19 3.69
1140 1168 4.451150 GCCGTGGCGAGGATGACA 62.451 66.667 0.00 0.00 0.00 3.58
1230 1258 0.245539 TTCCGACGATGGTTCCACTC 59.754 55.000 0.00 0.00 0.00 3.51
1260 1288 3.249687 GGCAACGATGAGGGAAAGT 57.750 52.632 0.00 0.00 0.00 2.66
1350 1378 3.825585 TGTTGATGCCAGTAAATTGCTGA 59.174 39.130 12.62 0.00 36.12 4.26
1378 1406 6.352222 GGCCTGCATAGTTCCATATGTATACT 60.352 42.308 4.17 4.66 35.87 2.12
1397 1425 9.727859 TGTATACTTGTTAGAAAAAGTGCCATA 57.272 29.630 7.91 0.00 37.23 2.74
1426 1454 6.822442 TGTCAACTTGATGTTCCTACTGTAA 58.178 36.000 0.00 0.00 36.63 2.41
1446 1474 6.298361 TGTAACATGCATTCAGGTAGCATAT 58.702 36.000 0.00 0.00 46.39 1.78
1447 1475 7.449247 TGTAACATGCATTCAGGTAGCATATA 58.551 34.615 0.00 0.00 46.39 0.86
1448 1476 6.808008 AACATGCATTCAGGTAGCATATAC 57.192 37.500 0.00 0.00 46.39 1.47
1449 1477 6.119240 ACATGCATTCAGGTAGCATATACT 57.881 37.500 0.00 0.00 46.39 2.12
1450 1478 7.244886 ACATGCATTCAGGTAGCATATACTA 57.755 36.000 0.00 0.00 46.39 1.82
1451 1479 7.855375 ACATGCATTCAGGTAGCATATACTAT 58.145 34.615 0.00 0.00 46.39 2.12
1452 1480 7.984050 ACATGCATTCAGGTAGCATATACTATC 59.016 37.037 0.00 0.00 46.39 2.08
1453 1481 6.878317 TGCATTCAGGTAGCATATACTATCC 58.122 40.000 0.00 0.00 32.55 2.59
1454 1482 6.669591 TGCATTCAGGTAGCATATACTATCCT 59.330 38.462 0.00 0.00 32.55 3.24
1455 1483 6.983307 GCATTCAGGTAGCATATACTATCCTG 59.017 42.308 17.32 17.32 39.83 3.86
1457 1485 5.580022 TCAGGTAGCATATACTATCCTGCA 58.420 41.667 18.02 10.21 39.15 4.41
1458 1486 6.197903 TCAGGTAGCATATACTATCCTGCAT 58.802 40.000 18.02 0.00 39.15 3.96
1466 1500 8.327271 AGCATATACTATCCTGCATTTTCTGAT 58.673 33.333 0.00 0.00 37.09 2.90
1536 1570 1.923356 TGGCACTCCCAAAAGGATTC 58.077 50.000 0.00 0.00 46.33 2.52
1544 1578 5.048713 CACTCCCAAAAGGATTCAGTAACAC 60.049 44.000 0.00 0.00 46.33 3.32
1545 1579 5.163088 ACTCCCAAAAGGATTCAGTAACACT 60.163 40.000 0.00 0.00 46.33 3.55
1546 1580 5.070001 TCCCAAAAGGATTCAGTAACACTG 58.930 41.667 0.00 0.00 43.22 3.66
1547 1581 4.321230 CCCAAAAGGATTCAGTAACACTGC 60.321 45.833 1.34 0.00 41.53 4.40
1548 1582 4.278170 CCAAAAGGATTCAGTAACACTGCA 59.722 41.667 1.34 0.00 45.54 4.41
1549 1583 5.221224 CCAAAAGGATTCAGTAACACTGCAA 60.221 40.000 1.34 0.00 45.54 4.08
1550 1584 5.438761 AAAGGATTCAGTAACACTGCAAC 57.561 39.130 1.34 0.00 45.54 4.17
1551 1585 4.085357 AGGATTCAGTAACACTGCAACA 57.915 40.909 1.34 0.00 45.54 3.33
1558 1605 3.792956 CAGTAACACTGCAACAGCAAAAG 59.207 43.478 0.00 0.00 39.62 2.27
1569 1616 4.274950 GCAACAGCAAAAGGTCTAGTTACA 59.725 41.667 0.00 0.00 0.00 2.41
1595 1642 3.079578 CTGACACTGACATGCCAGAATT 58.920 45.455 16.61 0.00 37.59 2.17
1596 1643 4.256110 CTGACACTGACATGCCAGAATTA 58.744 43.478 16.61 0.00 37.59 1.40
1597 1644 4.847198 TGACACTGACATGCCAGAATTAT 58.153 39.130 16.61 0.00 37.59 1.28
1600 1647 6.209192 TGACACTGACATGCCAGAATTATTTT 59.791 34.615 16.61 0.00 37.59 1.82
1620 1667 3.624326 TTTTGAAACCGAGCTGACATG 57.376 42.857 0.00 0.00 0.00 3.21
1621 1668 0.874390 TTGAAACCGAGCTGACATGC 59.126 50.000 0.00 0.00 0.00 4.06
1622 1669 0.955428 TGAAACCGAGCTGACATGCC 60.955 55.000 0.00 0.00 0.00 4.40
1623 1670 0.955428 GAAACCGAGCTGACATGCCA 60.955 55.000 0.00 0.00 0.00 4.92
1624 1671 0.957395 AAACCGAGCTGACATGCCAG 60.957 55.000 4.40 4.40 37.23 4.85
1625 1672 1.830587 AACCGAGCTGACATGCCAGA 61.831 55.000 13.82 0.00 36.29 3.86
1626 1673 1.078918 CCGAGCTGACATGCCAGAA 60.079 57.895 13.82 0.00 36.29 3.02
1627 1674 0.463295 CCGAGCTGACATGCCAGAAT 60.463 55.000 13.82 0.00 36.29 2.40
1628 1675 0.656259 CGAGCTGACATGCCAGAATG 59.344 55.000 13.82 0.00 36.29 2.67
1629 1676 1.741394 CGAGCTGACATGCCAGAATGA 60.741 52.381 13.82 0.00 39.69 2.57
1630 1677 2.362736 GAGCTGACATGCCAGAATGAA 58.637 47.619 13.82 0.00 39.69 2.57
1631 1678 2.950309 GAGCTGACATGCCAGAATGAAT 59.050 45.455 13.82 0.00 39.69 2.57
1632 1679 3.362706 AGCTGACATGCCAGAATGAATT 58.637 40.909 13.82 0.00 39.69 2.17
1633 1680 4.529897 AGCTGACATGCCAGAATGAATTA 58.470 39.130 13.82 0.00 39.69 1.40
1634 1681 5.138276 AGCTGACATGCCAGAATGAATTAT 58.862 37.500 13.82 0.00 39.69 1.28
1635 1682 5.241064 AGCTGACATGCCAGAATGAATTATC 59.759 40.000 13.82 0.00 39.69 1.75
1636 1683 5.241064 GCTGACATGCCAGAATGAATTATCT 59.759 40.000 13.82 0.00 39.69 1.98
1637 1684 6.238953 GCTGACATGCCAGAATGAATTATCTT 60.239 38.462 13.82 0.00 39.69 2.40
1663 1710 1.606994 CCAGTGTACAAGCGCCTTACA 60.607 52.381 2.29 6.51 0.00 2.41
1672 1719 2.510768 AGCGCCTTACATAGCAGTAC 57.489 50.000 2.29 0.00 0.00 2.73
1692 1739 7.463383 GCAGTACTCTCAATTATCAAACGACAG 60.463 40.741 0.00 0.00 0.00 3.51
1696 1743 6.929049 ACTCTCAATTATCAAACGACAGTGAA 59.071 34.615 0.00 0.00 0.00 3.18
1698 1745 7.963981 TCTCAATTATCAAACGACAGTGAATC 58.036 34.615 0.00 0.00 0.00 2.52
1699 1746 7.819415 TCTCAATTATCAAACGACAGTGAATCT 59.181 33.333 0.00 0.00 0.00 2.40
1709 1756 2.847327 CAGTGAATCTGGTGTGAGGT 57.153 50.000 0.00 0.00 40.23 3.85
1731 1778 3.511477 AGAGGCTGAAAGTACCTGAAGA 58.489 45.455 0.00 0.00 35.30 2.87
1955 2002 5.604565 AGAAAACAAAAGCAGATCAAAGGG 58.395 37.500 0.00 0.00 0.00 3.95
1963 2010 5.441718 AAGCAGATCAAAGGGATAAGACA 57.558 39.130 0.00 0.00 36.00 3.41
1964 2011 5.643421 AGCAGATCAAAGGGATAAGACAT 57.357 39.130 0.00 0.00 36.00 3.06
2056 2113 2.495155 ACTGTATGATTGCTGGCACA 57.505 45.000 0.00 0.00 0.00 4.57
2103 2160 1.906574 TGTCCCAGGAACCTATGACAC 59.093 52.381 15.72 2.36 33.65 3.67
2104 2161 1.134788 GTCCCAGGAACCTATGACACG 60.135 57.143 13.45 0.00 0.00 4.49
2108 2165 3.021695 CCAGGAACCTATGACACGTAGA 58.978 50.000 0.00 0.00 0.00 2.59
2164 2223 3.433615 GCAGCTTATAAATAGCTCCACCG 59.566 47.826 0.00 0.00 45.52 4.94
2165 2224 3.997021 CAGCTTATAAATAGCTCCACCGG 59.003 47.826 0.00 0.00 45.52 5.28
2171 2230 0.620700 AATAGCTCCACCGGACCCTT 60.621 55.000 9.46 0.00 0.00 3.95
2176 2235 0.981943 CTCCACCGGACCCTTTTAGT 59.018 55.000 9.46 0.00 0.00 2.24
2177 2236 1.350019 CTCCACCGGACCCTTTTAGTT 59.650 52.381 9.46 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.559958 CGTTTCTTGATGCAATAATACTTTCTT 57.440 29.630 0.00 0.00 0.00 2.52
20 21 8.730680 ACGTTTCTTGATGCAATAATACTTTCT 58.269 29.630 0.00 0.00 0.00 2.52
21 22 8.895932 ACGTTTCTTGATGCAATAATACTTTC 57.104 30.769 0.00 0.00 0.00 2.62
22 23 7.968405 GGACGTTTCTTGATGCAATAATACTTT 59.032 33.333 0.00 0.00 0.00 2.66
23 24 7.472543 GGACGTTTCTTGATGCAATAATACTT 58.527 34.615 0.00 0.00 0.00 2.24
24 25 6.238103 CGGACGTTTCTTGATGCAATAATACT 60.238 38.462 0.00 0.00 0.00 2.12
25 26 5.901884 CGGACGTTTCTTGATGCAATAATAC 59.098 40.000 0.00 0.00 0.00 1.89
26 27 5.813157 TCGGACGTTTCTTGATGCAATAATA 59.187 36.000 0.00 0.00 0.00 0.98
27 28 4.634004 TCGGACGTTTCTTGATGCAATAAT 59.366 37.500 0.00 0.00 0.00 1.28
28 29 3.997681 TCGGACGTTTCTTGATGCAATAA 59.002 39.130 0.00 0.00 0.00 1.40
29 30 3.591023 TCGGACGTTTCTTGATGCAATA 58.409 40.909 0.00 0.00 0.00 1.90
30 31 2.422597 TCGGACGTTTCTTGATGCAAT 58.577 42.857 0.00 0.00 0.00 3.56
31 32 1.872388 TCGGACGTTTCTTGATGCAA 58.128 45.000 0.00 0.00 0.00 4.08
32 33 1.798223 CTTCGGACGTTTCTTGATGCA 59.202 47.619 0.00 0.00 0.00 3.96
33 34 2.066262 TCTTCGGACGTTTCTTGATGC 58.934 47.619 0.00 0.00 0.00 3.91
34 35 4.211374 AGTTTCTTCGGACGTTTCTTGATG 59.789 41.667 0.00 0.00 0.00 3.07
35 36 4.377897 AGTTTCTTCGGACGTTTCTTGAT 58.622 39.130 0.00 0.00 0.00 2.57
36 37 3.788937 AGTTTCTTCGGACGTTTCTTGA 58.211 40.909 0.00 0.00 0.00 3.02
37 38 4.531659 AAGTTTCTTCGGACGTTTCTTG 57.468 40.909 0.00 0.00 0.00 3.02
38 39 5.556355 AAAAGTTTCTTCGGACGTTTCTT 57.444 34.783 0.00 0.00 0.00 2.52
39 40 5.556355 AAAAAGTTTCTTCGGACGTTTCT 57.444 34.783 0.00 0.00 29.45 2.52
60 61 9.462174 CAACAATAATACTTCAGTGCTTCAAAA 57.538 29.630 0.00 0.00 0.00 2.44
61 62 8.629158 ACAACAATAATACTTCAGTGCTTCAAA 58.371 29.630 0.00 0.00 0.00 2.69
62 63 8.165239 ACAACAATAATACTTCAGTGCTTCAA 57.835 30.769 0.00 0.00 0.00 2.69
63 64 7.360017 CGACAACAATAATACTTCAGTGCTTCA 60.360 37.037 0.00 0.00 0.00 3.02
64 65 6.955963 CGACAACAATAATACTTCAGTGCTTC 59.044 38.462 0.00 0.00 0.00 3.86
65 66 6.649141 TCGACAACAATAATACTTCAGTGCTT 59.351 34.615 0.00 0.00 0.00 3.91
66 67 6.163476 TCGACAACAATAATACTTCAGTGCT 58.837 36.000 0.00 0.00 0.00 4.40
67 68 6.403333 TCGACAACAATAATACTTCAGTGC 57.597 37.500 0.00 0.00 0.00 4.40
68 69 7.277760 TCCATCGACAACAATAATACTTCAGTG 59.722 37.037 0.00 0.00 0.00 3.66
69 70 7.327975 TCCATCGACAACAATAATACTTCAGT 58.672 34.615 0.00 0.00 0.00 3.41
70 71 7.492669 ACTCCATCGACAACAATAATACTTCAG 59.507 37.037 0.00 0.00 0.00 3.02
71 72 7.327975 ACTCCATCGACAACAATAATACTTCA 58.672 34.615 0.00 0.00 0.00 3.02
72 73 7.491372 TGACTCCATCGACAACAATAATACTTC 59.509 37.037 0.00 0.00 0.00 3.01
73 74 7.327975 TGACTCCATCGACAACAATAATACTT 58.672 34.615 0.00 0.00 0.00 2.24
74 75 6.873997 TGACTCCATCGACAACAATAATACT 58.126 36.000 0.00 0.00 0.00 2.12
75 76 6.757010 ACTGACTCCATCGACAACAATAATAC 59.243 38.462 0.00 0.00 0.00 1.89
76 77 6.873997 ACTGACTCCATCGACAACAATAATA 58.126 36.000 0.00 0.00 0.00 0.98
77 78 5.734720 ACTGACTCCATCGACAACAATAAT 58.265 37.500 0.00 0.00 0.00 1.28
78 79 5.147330 ACTGACTCCATCGACAACAATAA 57.853 39.130 0.00 0.00 0.00 1.40
79 80 4.801330 ACTGACTCCATCGACAACAATA 57.199 40.909 0.00 0.00 0.00 1.90
80 81 3.685139 ACTGACTCCATCGACAACAAT 57.315 42.857 0.00 0.00 0.00 2.71
81 82 3.181470 TGAACTGACTCCATCGACAACAA 60.181 43.478 0.00 0.00 0.00 2.83
82 83 2.364002 TGAACTGACTCCATCGACAACA 59.636 45.455 0.00 0.00 0.00 3.33
83 84 3.026630 TGAACTGACTCCATCGACAAC 57.973 47.619 0.00 0.00 0.00 3.32
84 85 3.744238 TTGAACTGACTCCATCGACAA 57.256 42.857 0.00 0.00 0.00 3.18
85 86 3.744238 TTTGAACTGACTCCATCGACA 57.256 42.857 0.00 0.00 0.00 4.35
86 87 5.613358 AAATTTGAACTGACTCCATCGAC 57.387 39.130 0.00 0.00 0.00 4.20
87 88 6.464222 ACTAAATTTGAACTGACTCCATCGA 58.536 36.000 0.00 0.00 0.00 3.59
88 89 6.727824 ACTAAATTTGAACTGACTCCATCG 57.272 37.500 0.00 0.00 0.00 3.84
106 107 9.661563 ACTCCATCGACAACAATAATAACTAAA 57.338 29.630 0.00 0.00 0.00 1.85
107 108 9.309516 GACTCCATCGACAACAATAATAACTAA 57.690 33.333 0.00 0.00 0.00 2.24
108 109 8.471609 TGACTCCATCGACAACAATAATAACTA 58.528 33.333 0.00 0.00 0.00 2.24
109 110 7.327975 TGACTCCATCGACAACAATAATAACT 58.672 34.615 0.00 0.00 0.00 2.24
110 111 7.277981 ACTGACTCCATCGACAACAATAATAAC 59.722 37.037 0.00 0.00 0.00 1.89
111 112 7.327975 ACTGACTCCATCGACAACAATAATAA 58.672 34.615 0.00 0.00 0.00 1.40
112 113 6.873997 ACTGACTCCATCGACAACAATAATA 58.126 36.000 0.00 0.00 0.00 0.98
113 114 5.734720 ACTGACTCCATCGACAACAATAAT 58.265 37.500 0.00 0.00 0.00 1.28
114 115 5.147330 ACTGACTCCATCGACAACAATAA 57.853 39.130 0.00 0.00 0.00 1.40
115 116 4.801330 ACTGACTCCATCGACAACAATA 57.199 40.909 0.00 0.00 0.00 1.90
116 117 3.685139 ACTGACTCCATCGACAACAAT 57.315 42.857 0.00 0.00 0.00 2.71
117 118 3.130633 CAACTGACTCCATCGACAACAA 58.869 45.455 0.00 0.00 0.00 2.83
118 119 2.364002 TCAACTGACTCCATCGACAACA 59.636 45.455 0.00 0.00 0.00 3.33
119 120 3.026630 TCAACTGACTCCATCGACAAC 57.973 47.619 0.00 0.00 0.00 3.32
120 121 3.744238 TTCAACTGACTCCATCGACAA 57.256 42.857 0.00 0.00 0.00 3.18
121 122 3.961480 ATTCAACTGACTCCATCGACA 57.039 42.857 0.00 0.00 0.00 4.35
122 123 6.910536 AATAATTCAACTGACTCCATCGAC 57.089 37.500 0.00 0.00 0.00 4.20
123 124 7.782049 ACTAATAATTCAACTGACTCCATCGA 58.218 34.615 0.00 0.00 0.00 3.59
124 125 7.706607 TGACTAATAATTCAACTGACTCCATCG 59.293 37.037 0.00 0.00 0.00 3.84
125 126 8.948631 TGACTAATAATTCAACTGACTCCATC 57.051 34.615 0.00 0.00 0.00 3.51
126 127 9.739276 TTTGACTAATAATTCAACTGACTCCAT 57.261 29.630 0.00 0.00 31.42 3.41
127 128 9.739276 ATTTGACTAATAATTCAACTGACTCCA 57.261 29.630 0.00 0.00 31.42 3.86
151 152 8.436778 GGCCCCTATATAAATTTCAACCAAATT 58.563 33.333 0.00 0.00 45.15 1.82
152 153 7.017155 GGGCCCCTATATAAATTTCAACCAAAT 59.983 37.037 12.23 0.00 36.12 2.32
153 154 6.327887 GGGCCCCTATATAAATTTCAACCAAA 59.672 38.462 12.23 0.00 0.00 3.28
154 155 5.841783 GGGCCCCTATATAAATTTCAACCAA 59.158 40.000 12.23 0.00 0.00 3.67
155 156 5.103043 TGGGCCCCTATATAAATTTCAACCA 60.103 40.000 22.27 0.00 0.00 3.67
156 157 5.399113 TGGGCCCCTATATAAATTTCAACC 58.601 41.667 22.27 0.00 0.00 3.77
157 158 6.496911 ACATGGGCCCCTATATAAATTTCAAC 59.503 38.462 22.27 0.00 0.00 3.18
158 159 6.629156 ACATGGGCCCCTATATAAATTTCAA 58.371 36.000 22.27 0.00 0.00 2.69
159 160 6.183361 TGACATGGGCCCCTATATAAATTTCA 60.183 38.462 22.27 9.26 0.00 2.69
160 161 6.152831 GTGACATGGGCCCCTATATAAATTTC 59.847 42.308 22.27 6.50 0.00 2.17
161 162 6.016555 GTGACATGGGCCCCTATATAAATTT 58.983 40.000 22.27 0.00 0.00 1.82
162 163 5.518367 GGTGACATGGGCCCCTATATAAATT 60.518 44.000 22.27 0.00 0.00 1.82
163 164 4.017499 GGTGACATGGGCCCCTATATAAAT 60.017 45.833 22.27 0.00 0.00 1.40
164 165 3.332485 GGTGACATGGGCCCCTATATAAA 59.668 47.826 22.27 0.00 0.00 1.40
165 166 2.916934 GGTGACATGGGCCCCTATATAA 59.083 50.000 22.27 0.00 0.00 0.98
166 167 2.557869 GGTGACATGGGCCCCTATATA 58.442 52.381 22.27 0.00 0.00 0.86
167 168 1.372501 GGTGACATGGGCCCCTATAT 58.627 55.000 22.27 1.99 0.00 0.86
168 169 1.125093 CGGTGACATGGGCCCCTATA 61.125 60.000 22.27 0.00 0.00 1.31
169 170 2.452064 CGGTGACATGGGCCCCTAT 61.452 63.158 22.27 3.40 0.00 2.57
170 171 3.087253 CGGTGACATGGGCCCCTA 61.087 66.667 22.27 0.09 0.00 3.53
172 173 4.489771 CTCGGTGACATGGGCCCC 62.490 72.222 22.27 3.54 0.00 5.80
173 174 3.268103 AACTCGGTGACATGGGCCC 62.268 63.158 17.59 17.59 0.00 5.80
174 175 1.745489 GAACTCGGTGACATGGGCC 60.745 63.158 0.00 0.00 0.00 5.80
175 176 2.100631 CGAACTCGGTGACATGGGC 61.101 63.158 0.00 0.00 35.37 5.36
176 177 2.100631 GCGAACTCGGTGACATGGG 61.101 63.158 0.00 0.00 40.23 4.00
177 178 2.100631 GGCGAACTCGGTGACATGG 61.101 63.158 0.00 0.00 40.23 3.66
178 179 0.172578 TAGGCGAACTCGGTGACATG 59.827 55.000 0.69 0.00 40.23 3.21
179 180 0.456221 CTAGGCGAACTCGGTGACAT 59.544 55.000 0.69 0.00 40.23 3.06
180 181 1.592400 CCTAGGCGAACTCGGTGACA 61.592 60.000 0.00 0.00 40.23 3.58
181 182 1.139095 CCTAGGCGAACTCGGTGAC 59.861 63.158 0.00 0.00 40.23 3.67
182 183 2.050350 CCCTAGGCGAACTCGGTGA 61.050 63.158 2.05 0.00 40.23 4.02
183 184 2.494918 CCCTAGGCGAACTCGGTG 59.505 66.667 2.05 0.00 40.23 4.94
184 185 3.459063 GCCCTAGGCGAACTCGGT 61.459 66.667 2.05 0.00 39.62 4.69
194 195 1.203001 TGTGTTTTGGAAGGCCCTAGG 60.203 52.381 0.06 0.06 35.38 3.02
195 196 2.162681 CTGTGTTTTGGAAGGCCCTAG 58.837 52.381 0.00 0.00 35.38 3.02
196 197 1.203001 CCTGTGTTTTGGAAGGCCCTA 60.203 52.381 0.00 0.00 35.38 3.53
197 198 0.469892 CCTGTGTTTTGGAAGGCCCT 60.470 55.000 0.00 0.00 35.38 5.19
198 199 1.471829 CCCTGTGTTTTGGAAGGCCC 61.472 60.000 0.00 0.00 0.00 5.80
199 200 2.049435 CCCTGTGTTTTGGAAGGCC 58.951 57.895 0.00 0.00 0.00 5.19
200 201 1.367471 GCCCTGTGTTTTGGAAGGC 59.633 57.895 0.00 0.00 0.00 4.35
201 202 0.758685 TGGCCCTGTGTTTTGGAAGG 60.759 55.000 0.00 0.00 0.00 3.46
202 203 0.675633 CTGGCCCTGTGTTTTGGAAG 59.324 55.000 0.00 0.00 0.00 3.46
203 204 1.398958 GCTGGCCCTGTGTTTTGGAA 61.399 55.000 0.00 0.00 0.00 3.53
204 205 1.832167 GCTGGCCCTGTGTTTTGGA 60.832 57.895 0.00 0.00 0.00 3.53
205 206 2.132996 TGCTGGCCCTGTGTTTTGG 61.133 57.895 0.00 0.00 0.00 3.28
206 207 1.067916 GTGCTGGCCCTGTGTTTTG 59.932 57.895 0.00 0.00 0.00 2.44
207 208 1.076044 AGTGCTGGCCCTGTGTTTT 60.076 52.632 0.00 0.00 0.00 2.43
208 209 1.829533 CAGTGCTGGCCCTGTGTTT 60.830 57.895 0.00 0.00 0.00 2.83
209 210 2.203394 CAGTGCTGGCCCTGTGTT 60.203 61.111 0.00 0.00 0.00 3.32
210 211 3.492353 ACAGTGCTGGCCCTGTGT 61.492 61.111 11.13 0.00 40.30 3.72
212 213 4.962836 GCACAGTGCTGGCCCTGT 62.963 66.667 18.92 6.56 42.47 4.00
221 222 2.743636 TGTACCTAAGAGCACAGTGC 57.256 50.000 18.55 18.55 45.46 4.40
222 223 3.195610 TCCATGTACCTAAGAGCACAGTG 59.804 47.826 0.00 0.00 0.00 3.66
223 224 3.441101 TCCATGTACCTAAGAGCACAGT 58.559 45.455 0.00 0.00 0.00 3.55
224 225 3.701542 TCTCCATGTACCTAAGAGCACAG 59.298 47.826 0.00 0.00 0.00 3.66
225 226 3.708451 TCTCCATGTACCTAAGAGCACA 58.292 45.455 0.00 0.00 0.00 4.57
226 227 4.946478 ATCTCCATGTACCTAAGAGCAC 57.054 45.455 0.00 0.00 0.00 4.40
227 228 5.953571 TCTATCTCCATGTACCTAAGAGCA 58.046 41.667 0.00 0.00 0.00 4.26
228 229 6.492087 AGTTCTATCTCCATGTACCTAAGAGC 59.508 42.308 0.00 0.00 0.00 4.09
229 230 7.040062 CCAGTTCTATCTCCATGTACCTAAGAG 60.040 44.444 0.00 0.00 0.00 2.85
230 231 6.778069 CCAGTTCTATCTCCATGTACCTAAGA 59.222 42.308 0.00 0.00 0.00 2.10
231 232 6.517529 GCCAGTTCTATCTCCATGTACCTAAG 60.518 46.154 0.00 0.00 0.00 2.18
232 233 5.304614 GCCAGTTCTATCTCCATGTACCTAA 59.695 44.000 0.00 0.00 0.00 2.69
233 234 4.833380 GCCAGTTCTATCTCCATGTACCTA 59.167 45.833 0.00 0.00 0.00 3.08
234 235 3.643792 GCCAGTTCTATCTCCATGTACCT 59.356 47.826 0.00 0.00 0.00 3.08
235 236 3.388024 TGCCAGTTCTATCTCCATGTACC 59.612 47.826 0.00 0.00 0.00 3.34
236 237 4.672587 TGCCAGTTCTATCTCCATGTAC 57.327 45.455 0.00 0.00 0.00 2.90
237 238 5.894298 ATTGCCAGTTCTATCTCCATGTA 57.106 39.130 0.00 0.00 0.00 2.29
238 239 4.785346 ATTGCCAGTTCTATCTCCATGT 57.215 40.909 0.00 0.00 0.00 3.21
239 240 5.221185 CCAAATTGCCAGTTCTATCTCCATG 60.221 44.000 0.00 0.00 0.00 3.66
240 241 4.891756 CCAAATTGCCAGTTCTATCTCCAT 59.108 41.667 0.00 0.00 0.00 3.41
241 242 4.272489 CCAAATTGCCAGTTCTATCTCCA 58.728 43.478 0.00 0.00 0.00 3.86
242 243 3.633986 CCCAAATTGCCAGTTCTATCTCC 59.366 47.826 0.00 0.00 0.00 3.71
243 244 4.526970 TCCCAAATTGCCAGTTCTATCTC 58.473 43.478 0.00 0.00 0.00 2.75
244 245 4.591321 TCCCAAATTGCCAGTTCTATCT 57.409 40.909 0.00 0.00 0.00 1.98
245 246 5.241728 GGTATCCCAAATTGCCAGTTCTATC 59.758 44.000 0.00 0.00 0.00 2.08
246 247 5.140454 GGTATCCCAAATTGCCAGTTCTAT 58.860 41.667 0.00 0.00 0.00 1.98
247 248 4.017958 TGGTATCCCAAATTGCCAGTTCTA 60.018 41.667 0.00 0.00 37.98 2.10
248 249 3.245586 TGGTATCCCAAATTGCCAGTTCT 60.246 43.478 0.00 0.00 37.98 3.01
249 250 3.096092 TGGTATCCCAAATTGCCAGTTC 58.904 45.455 0.00 0.00 37.98 3.01
250 251 3.099141 CTGGTATCCCAAATTGCCAGTT 58.901 45.455 7.98 0.00 41.27 3.16
251 252 2.738743 CTGGTATCCCAAATTGCCAGT 58.261 47.619 7.98 0.00 41.27 4.00
252 253 2.738743 ACTGGTATCCCAAATTGCCAG 58.261 47.619 12.84 12.84 46.32 4.85
253 254 2.917713 ACTGGTATCCCAAATTGCCA 57.082 45.000 0.00 0.00 41.27 4.92
254 255 4.439563 CGTAAACTGGTATCCCAAATTGCC 60.440 45.833 0.00 0.00 41.27 4.52
255 256 4.396790 TCGTAAACTGGTATCCCAAATTGC 59.603 41.667 0.00 0.00 41.27 3.56
256 257 6.503589 TTCGTAAACTGGTATCCCAAATTG 57.496 37.500 0.00 0.00 41.27 2.32
257 258 7.712204 AATTCGTAAACTGGTATCCCAAATT 57.288 32.000 0.00 0.00 41.27 1.82
258 259 8.269317 TCTAATTCGTAAACTGGTATCCCAAAT 58.731 33.333 0.00 0.00 41.27 2.32
259 260 7.622713 TCTAATTCGTAAACTGGTATCCCAAA 58.377 34.615 0.00 0.00 41.27 3.28
260 261 7.185318 TCTAATTCGTAAACTGGTATCCCAA 57.815 36.000 0.00 0.00 41.27 4.12
261 262 6.795144 TCTAATTCGTAAACTGGTATCCCA 57.205 37.500 0.00 0.00 38.87 4.37
262 263 7.550196 TGTTTCTAATTCGTAAACTGGTATCCC 59.450 37.037 10.01 0.00 34.84 3.85
263 264 8.385858 GTGTTTCTAATTCGTAAACTGGTATCC 58.614 37.037 10.01 0.00 34.84 2.59
264 265 8.928733 TGTGTTTCTAATTCGTAAACTGGTATC 58.071 33.333 10.01 0.00 34.84 2.24
265 266 8.836268 TGTGTTTCTAATTCGTAAACTGGTAT 57.164 30.769 10.01 0.00 34.84 2.73
266 267 8.659925 TTGTGTTTCTAATTCGTAAACTGGTA 57.340 30.769 10.01 0.00 34.84 3.25
267 268 7.556733 TTGTGTTTCTAATTCGTAAACTGGT 57.443 32.000 10.01 0.00 34.84 4.00
268 269 8.739461 GTTTTGTGTTTCTAATTCGTAAACTGG 58.261 33.333 10.01 0.00 34.84 4.00
269 270 8.739461 GGTTTTGTGTTTCTAATTCGTAAACTG 58.261 33.333 10.01 0.00 34.84 3.16
270 271 7.916977 GGGTTTTGTGTTTCTAATTCGTAAACT 59.083 33.333 10.01 0.00 34.84 2.66
271 272 7.701501 TGGGTTTTGTGTTTCTAATTCGTAAAC 59.298 33.333 0.00 0.00 34.45 2.01
272 273 7.701501 GTGGGTTTTGTGTTTCTAATTCGTAAA 59.298 33.333 0.00 0.00 0.00 2.01
273 274 7.194962 GTGGGTTTTGTGTTTCTAATTCGTAA 58.805 34.615 0.00 0.00 0.00 3.18
274 275 6.511444 CGTGGGTTTTGTGTTTCTAATTCGTA 60.511 38.462 0.00 0.00 0.00 3.43
275 276 5.584442 GTGGGTTTTGTGTTTCTAATTCGT 58.416 37.500 0.00 0.00 0.00 3.85
276 277 4.673311 CGTGGGTTTTGTGTTTCTAATTCG 59.327 41.667 0.00 0.00 0.00 3.34
277 278 4.443063 GCGTGGGTTTTGTGTTTCTAATTC 59.557 41.667 0.00 0.00 0.00 2.17
278 279 4.142138 TGCGTGGGTTTTGTGTTTCTAATT 60.142 37.500 0.00 0.00 0.00 1.40
279 280 3.381908 TGCGTGGGTTTTGTGTTTCTAAT 59.618 39.130 0.00 0.00 0.00 1.73
291 292 3.127589 GCAGTTTATTTTGCGTGGGTTT 58.872 40.909 0.00 0.00 0.00 3.27
298 299 4.536065 TGTCTTCAGCAGTTTATTTTGCG 58.464 39.130 0.00 0.00 44.80 4.85
299 300 5.284660 CGATGTCTTCAGCAGTTTATTTTGC 59.715 40.000 0.00 0.00 40.57 3.68
323 327 2.224917 TGGGTGGTAGATGGACAAAACC 60.225 50.000 0.00 0.00 0.00 3.27
388 393 1.216178 GTTTCTGCATTGCCGGCAT 59.784 52.632 33.25 17.83 41.06 4.40
415 420 0.450583 GACCGTATGACTGAGACGCA 59.549 55.000 0.00 0.00 37.98 5.24
416 421 0.589229 CGACCGTATGACTGAGACGC 60.589 60.000 0.00 0.00 37.98 5.19
418 423 0.733729 AGCGACCGTATGACTGAGAC 59.266 55.000 0.00 0.00 0.00 3.36
423 428 1.544691 AGTCAAAGCGACCGTATGACT 59.455 47.619 15.53 15.53 46.69 3.41
439 444 6.704050 TGTTCAAGTCGAATATTGTTGAGTCA 59.296 34.615 0.00 0.00 35.63 3.41
440 445 7.010023 GTGTTCAAGTCGAATATTGTTGAGTC 58.990 38.462 0.00 0.00 35.63 3.36
448 453 3.060363 GTCGCGTGTTCAAGTCGAATATT 59.940 43.478 5.77 0.00 35.63 1.28
458 463 1.077089 TGTTGTCGTCGCGTGTTCAA 61.077 50.000 5.77 5.76 0.00 2.69
474 479 2.509569 TCAATGGCGGTGTGTTATGTT 58.490 42.857 0.00 0.00 0.00 2.71
478 502 5.024785 TGTATATCAATGGCGGTGTGTTA 57.975 39.130 0.00 0.00 0.00 2.41
497 521 4.156373 TCATACACGAATCACGAACCTGTA 59.844 41.667 0.00 0.00 45.77 2.74
498 522 3.057104 TCATACACGAATCACGAACCTGT 60.057 43.478 0.00 0.00 45.77 4.00
614 641 0.463116 CGGCGCCCTTTTAGTATGGT 60.463 55.000 23.46 0.00 0.00 3.55
663 691 0.473886 AGGTAAGACCACCACCTGCT 60.474 55.000 0.00 0.00 41.95 4.24
666 694 2.417719 AAGAGGTAAGACCACCACCT 57.582 50.000 0.00 0.00 45.42 4.00
672 700 0.813184 CGCCGTAAGAGGTAAGACCA 59.187 55.000 0.00 0.00 41.95 4.02
673 701 0.527169 GCGCCGTAAGAGGTAAGACC 60.527 60.000 0.00 0.00 43.02 3.85
674 702 0.171903 TGCGCCGTAAGAGGTAAGAC 59.828 55.000 4.18 0.00 43.02 3.01
675 703 0.454600 CTGCGCCGTAAGAGGTAAGA 59.545 55.000 4.18 0.00 43.02 2.10
676 704 1.146358 GCTGCGCCGTAAGAGGTAAG 61.146 60.000 4.18 0.00 43.02 2.34
677 705 1.153706 GCTGCGCCGTAAGAGGTAA 60.154 57.895 4.18 0.00 43.02 2.85
678 706 2.344981 TGCTGCGCCGTAAGAGGTA 61.345 57.895 4.18 0.00 43.02 3.08
679 707 3.691342 TGCTGCGCCGTAAGAGGT 61.691 61.111 4.18 0.00 43.02 3.85
680 708 3.188786 GTGCTGCGCCGTAAGAGG 61.189 66.667 4.18 0.00 43.02 3.69
681 709 3.188786 GGTGCTGCGCCGTAAGAG 61.189 66.667 17.46 0.00 43.02 2.85
737 765 0.035915 GGACCTCCTGTGGAAAGAGC 60.036 60.000 0.00 0.00 0.00 4.09
741 769 0.401395 AGGTGGACCTCCTGTGGAAA 60.401 55.000 14.48 0.00 44.77 3.13
753 781 1.251527 TGAGCTTCGAGGAGGTGGAC 61.252 60.000 0.00 0.00 0.00 4.02
756 784 1.515020 CCTGAGCTTCGAGGAGGTG 59.485 63.158 0.00 0.00 0.00 4.00
795 823 0.528684 CCTTGATCTTCGTCGCCCTC 60.529 60.000 0.00 0.00 0.00 4.30
801 829 1.936547 GTGATGGCCTTGATCTTCGTC 59.063 52.381 3.32 0.00 0.00 4.20
825 853 4.081142 ACATTCATAATCATCGCCGGGATA 60.081 41.667 2.18 0.00 32.85 2.59
840 868 1.034838 GCACCGGCCCAACATTCATA 61.035 55.000 0.00 0.00 0.00 2.15
842 870 2.988684 GCACCGGCCCAACATTCA 60.989 61.111 0.00 0.00 0.00 2.57
879 907 3.112709 GTGGCGCAGACGTTCCTC 61.113 66.667 10.83 0.00 41.59 3.71
1104 1132 2.216898 GCCTTCATACTGCAGTCATCC 58.783 52.381 25.56 2.84 0.00 3.51
1140 1168 3.003763 GGGGTCGTGCTCTCCCTT 61.004 66.667 13.06 0.00 40.88 3.95
1245 1273 2.093447 CCTGCTACTTTCCCTCATCGTT 60.093 50.000 0.00 0.00 0.00 3.85
1350 1378 2.834638 ATGGAACTATGCAGGCCTTT 57.165 45.000 0.00 0.00 0.00 3.11
1378 1406 8.200792 ACAAATGTATGGCACTTTTTCTAACAA 58.799 29.630 0.00 0.00 33.48 2.83
1397 1425 6.772716 AGTAGGAACATCAAGTTGACAAATGT 59.227 34.615 7.96 5.86 41.51 2.71
1426 1454 6.119240 AGTATATGCTACCTGAATGCATGT 57.881 37.500 0.00 5.92 45.52 3.21
1473 1507 7.046292 TGCTGTTTCTTGTCAAGTACTAGTA 57.954 36.000 12.30 0.00 33.29 1.82
1474 1508 5.914033 TGCTGTTTCTTGTCAAGTACTAGT 58.086 37.500 12.30 0.00 33.29 2.57
1475 1509 6.480320 ACTTGCTGTTTCTTGTCAAGTACTAG 59.520 38.462 12.30 11.56 43.60 2.57
1476 1510 6.346096 ACTTGCTGTTTCTTGTCAAGTACTA 58.654 36.000 12.30 3.65 43.60 1.82
1477 1511 5.186198 ACTTGCTGTTTCTTGTCAAGTACT 58.814 37.500 12.30 0.00 43.60 2.73
1478 1512 5.485662 ACTTGCTGTTTCTTGTCAAGTAC 57.514 39.130 12.30 11.72 43.60 2.73
1479 1513 6.509418 AAACTTGCTGTTTCTTGTCAAGTA 57.491 33.333 12.30 0.00 44.81 2.24
1495 1529 2.544486 CCAGGTCAAGCAAGAAACTTGC 60.544 50.000 23.31 23.31 43.40 4.01
1546 1580 3.990318 AACTAGACCTTTTGCTGTTGC 57.010 42.857 0.00 0.00 40.20 4.17
1547 1581 5.748592 GTGTAACTAGACCTTTTGCTGTTG 58.251 41.667 0.00 0.00 0.00 3.33
1569 1616 2.368548 TGGCATGTCAGTGTCAGTAAGT 59.631 45.455 0.00 0.00 0.00 2.24
1600 1647 2.287547 GCATGTCAGCTCGGTTTCAAAA 60.288 45.455 0.00 0.00 0.00 2.44
1602 1649 0.874390 GCATGTCAGCTCGGTTTCAA 59.126 50.000 0.00 0.00 0.00 2.69
1604 1651 0.955428 TGGCATGTCAGCTCGGTTTC 60.955 55.000 0.00 0.00 34.17 2.78
1605 1652 0.957395 CTGGCATGTCAGCTCGGTTT 60.957 55.000 15.56 0.00 34.17 3.27
1608 1655 0.463295 ATTCTGGCATGTCAGCTCGG 60.463 55.000 22.73 0.00 34.91 4.63
1609 1656 0.656259 CATTCTGGCATGTCAGCTCG 59.344 55.000 22.73 8.72 34.91 5.03
1611 1658 2.502142 TTCATTCTGGCATGTCAGCT 57.498 45.000 22.73 9.34 34.91 4.24
1613 1660 6.879276 AGATAATTCATTCTGGCATGTCAG 57.121 37.500 21.57 21.57 36.17 3.51
1614 1661 6.829811 TGAAGATAATTCATTCTGGCATGTCA 59.170 34.615 0.00 0.00 0.00 3.58
1615 1662 7.268199 TGAAGATAATTCATTCTGGCATGTC 57.732 36.000 0.00 0.00 0.00 3.06
1616 1663 7.834881 ATGAAGATAATTCATTCTGGCATGT 57.165 32.000 0.00 0.00 35.79 3.21
1617 1664 9.193133 GAAATGAAGATAATTCATTCTGGCATG 57.807 33.333 14.32 0.00 45.36 4.06
1618 1665 8.365647 GGAAATGAAGATAATTCATTCTGGCAT 58.634 33.333 14.32 0.78 45.36 4.40
1619 1666 7.342541 TGGAAATGAAGATAATTCATTCTGGCA 59.657 33.333 14.32 0.00 45.36 4.92
1620 1667 7.719483 TGGAAATGAAGATAATTCATTCTGGC 58.281 34.615 14.32 6.60 45.36 4.85
1621 1668 8.910944 ACTGGAAATGAAGATAATTCATTCTGG 58.089 33.333 14.32 8.96 45.36 3.86
1622 1669 9.731819 CACTGGAAATGAAGATAATTCATTCTG 57.268 33.333 14.32 10.14 45.36 3.02
1623 1670 9.471702 ACACTGGAAATGAAGATAATTCATTCT 57.528 29.630 14.32 6.90 45.36 2.40
1626 1673 9.685276 TGTACACTGGAAATGAAGATAATTCAT 57.315 29.630 0.00 0.00 40.57 2.57
1627 1674 9.513906 TTGTACACTGGAAATGAAGATAATTCA 57.486 29.630 0.00 0.00 0.00 2.57
1628 1675 9.994432 CTTGTACACTGGAAATGAAGATAATTC 57.006 33.333 0.00 0.00 0.00 2.17
1629 1676 8.462016 GCTTGTACACTGGAAATGAAGATAATT 58.538 33.333 0.00 0.00 0.00 1.40
1630 1677 7.201644 CGCTTGTACACTGGAAATGAAGATAAT 60.202 37.037 0.00 0.00 0.00 1.28
1631 1678 6.092122 CGCTTGTACACTGGAAATGAAGATAA 59.908 38.462 0.00 0.00 0.00 1.75
1632 1679 5.580691 CGCTTGTACACTGGAAATGAAGATA 59.419 40.000 0.00 0.00 0.00 1.98
1633 1680 4.393062 CGCTTGTACACTGGAAATGAAGAT 59.607 41.667 0.00 0.00 0.00 2.40
1634 1681 3.745975 CGCTTGTACACTGGAAATGAAGA 59.254 43.478 0.00 0.00 0.00 2.87
1635 1682 3.667960 GCGCTTGTACACTGGAAATGAAG 60.668 47.826 0.00 0.00 0.00 3.02
1636 1683 2.225491 GCGCTTGTACACTGGAAATGAA 59.775 45.455 0.00 0.00 0.00 2.57
1637 1684 1.804151 GCGCTTGTACACTGGAAATGA 59.196 47.619 0.00 0.00 0.00 2.57
1663 1710 8.414003 TCGTTTGATAATTGAGAGTACTGCTAT 58.586 33.333 0.00 0.00 0.00 2.97
1672 1719 6.951256 TCACTGTCGTTTGATAATTGAGAG 57.049 37.500 0.00 0.00 0.00 3.20
1692 1739 3.118956 CCTCTACCTCACACCAGATTCAC 60.119 52.174 0.00 0.00 0.00 3.18
1696 1743 1.007721 AGCCTCTACCTCACACCAGAT 59.992 52.381 0.00 0.00 0.00 2.90
1698 1745 0.534412 CAGCCTCTACCTCACACCAG 59.466 60.000 0.00 0.00 0.00 4.00
1699 1746 0.114364 TCAGCCTCTACCTCACACCA 59.886 55.000 0.00 0.00 0.00 4.17
1702 1749 2.609747 ACTTTCAGCCTCTACCTCACA 58.390 47.619 0.00 0.00 0.00 3.58
1709 1756 4.463186 GTCTTCAGGTACTTTCAGCCTCTA 59.537 45.833 0.00 0.00 34.60 2.43
1943 1990 6.995091 AGTTATGTCTTATCCCTTTGATCTGC 59.005 38.462 0.00 0.00 34.76 4.26
1945 1992 8.324191 TCAGTTATGTCTTATCCCTTTGATCT 57.676 34.615 0.00 0.00 34.76 2.75
1955 2002 8.564574 TGGTGTTTGTTTCAGTTATGTCTTATC 58.435 33.333 0.00 0.00 0.00 1.75
1963 2010 8.245195 AGGTTATTGGTGTTTGTTTCAGTTAT 57.755 30.769 0.00 0.00 0.00 1.89
1964 2011 7.648039 AGGTTATTGGTGTTTGTTTCAGTTA 57.352 32.000 0.00 0.00 0.00 2.24
2056 2113 1.739049 GATGCTCGGAGTAGCTGCT 59.261 57.895 3.08 3.08 43.19 4.24
2062 2119 3.120105 CGCTGGATGCTCGGAGTA 58.880 61.111 6.90 1.95 40.11 2.59
2086 2143 0.902531 ACGTGTCATAGGTTCCTGGG 59.097 55.000 1.12 0.00 0.00 4.45
2177 2236 7.816995 GTCATATGGCACCATTCTTGTTAAAAA 59.183 33.333 7.63 0.00 37.82 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.