>input_sequence_86876
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-------------------------------------------------------------------ATGCCCGGAGAGA
AGAAGGCGATGTACAGAGCGAGCCCTCCGACCGCGAACCACCCCAGCACGCCTTGGCAGGAGCCGCTGAACAGGCTCCCG
CAGAGGCTGGAGGATGACTGCAGTATGAAGGCCGTGGCGAGGATGACAAGGGAGAGCACGACCCCGGCTAGGCTTGTAAG
GGCCAGGCGGCGGCGGCCACAACGGTCGATGAGGTAG-------------------------------------------
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>chr2B_1_TraesCS2B01G368300
GAAAAAAGGAGAAGAAAGAAAGAAAGTATTATTGCATCAAGAAACGTCCGAAGAAACTTTTTTTGAAGCACTGAAGTATT
ATTGTTGTCGATGGAGTCAGTTCAAATTTAGTTATTATTGTTGTCGATGGAGTCAGTTGAATTATTAGTCAAATTTGGTT
GAAATTTATATAGGGGCCCATGTCACCGAGTTCGCCTAGGGCCTTCCAAAACACAGGGCCAGCACTGTGCTCTTAGGTAC
ATGGAGATAGAACTGGCAATTTGGGATACCAGTTTACGAATTAGAAACACAAAACCCACGC--AAA-ATAAACTGCTGAA
GACATCGGTTTTGTCCATCTACCACCCATCACCGCCAACGGAGCTCTTGCTCTTTGGTTCTTGG-TGCACTCATGCCGGC
AATGCAGAAACAATATTGCTGCGTCTCAGTCATACGGTCGCTTTGACTCAACAATATTCGACTTGAACACGCGACGACA-
------------------ACATAACACACCGCCATTGATATACAGGTTCGTGATTCGTGTATGATATT--GTCCATCCAG
TTCTTTCTAAGACTCCCGTCCTAGCTAGAAGCCAGCGACCGCCGCGAGCCAGCC-AGGCGCGGCGGGGCGCAGCCGCAGA
ACCATACTAAAAGGG-CGCCGCCGATGCACCGCCGTGCAGGACCAGAGCCAGCAGGTGGTGGTCTTACCTCTTACGGCGC
AGCACCCAGGAGGCTCTCGTGGCTGCCCTGGCTTCCCCAGGCCCGCTCTTTCCACAGGAGGTCCACCTCCTCGAAGCTCA
GGCCCTTGGTCTCCGGCACGTAGAGGGCGACGAAGATCAAGGCCATCACGGCTATCCCGGCGATGATTATGAATGTTGGG
CCGGTGCCGACCCACCCCACGATCGAGAGGAACGTCTGCGCCACGATCAGGTTGGAGATCCAGTTGACGGTGGCCGACAT
GCCGCCGCACATGCCGCGGTAGGCCTCGGGGTAGATCTCCGAGTTCACGGCCCATGGCACCGGCCCCATGCCCGGAGAGA
AGAAGGCGATGTACAGAGCGAGCCCTCCGACCGCGAACCACCCCAGCACGCCTTGGCAGGAGCCGCTGAACAGGCTCCCG
CAGAGGCTGGAGGATGACTGCAGTATGAAGGCCGTGGCGAGGATGACAAGGGAGAGCACGACCCCGGCTAGGCTTGTAAG
GGCCAGGCGGCGGCGGCCACAACGGTCGATGAGGTAGATTCCGACGATGGTTCCACTCGCATTCATGGCGGCAACGATGA
GGGAAAGTAGCAGGGCCAGCCTGTTGGAAGTGAACCCAGCCATCTGGACGATCGTGGGGCTGTAGTACATGACGGTGTTG
ATGCCAGTAAATTGCTGAAAGGCCTGCATAGTTCCATATGTATACTTGTTAGAAAAAGTGCCATACATTTGTCAACTTGA
TGTTCCTACTGTAACATGCATTCAGGTAGCATATACTATCCTGCAT------TTTCTGATAATAAATACTAGTACTTGAC
AAGAAACAGCAAGTTTCTTGCTTGACCTGGTGGCACTCCCAAAAGGATTCAGTAACACTGCAACAGC-------------
AAAAGGTCTAGTTACACTTACTGACACTGACATGCCAGAATTATTTTTTTGAAACCGAGCTGACATGCCAGAATGAATTA
TCTTCATTTCCAGTGTACAAGCGCCTTACATAGCAGTACTCTCAATTATCAAACGACAGTGAATCTGGTGTGAGGTAGAG
GCTGAAAGTACCTGAAGACCAGCTCCAGCAAAAAAAGCTAGCCTTAATTCCTTCAACCTGAATATGTCCAAATAGCTCCC
AGTACAGTTAGACTGGAATTCATGCATGGAAGCCGACGCAAGCAGCTCAACCTCTTCCTCCAGACGACCAGAGTCATATA
TCTGCTCCAGGACAGCAATAGCTTTTGCTTTCTCATCCTGTACAGAAAAATCAAGATAAGAAAACAAAAGCAGATCAAAG
GGATAAGACATAA----------CTGAAACAAACACCAATAACCTTCCGGTAAAGCCAGCGGGGAGATTCTGGCAGAAAA
AGCATCAGCACAAACTGTATGATTGCTGGCACAGCAGCTACTCCGAGCATCCAGCGCCATGTCCCAGGAACCTATGACAC
GTAGAGTGCATATT-ATTGCAACATAATACTAATACAAAG-CAGCTTATAAATAGCTCCACCGGACCCTTTTAGTTTTTT
AACAAGAATGGTGCCATATGACCATACC
>chr2D_281
TTAGA---------------------------------------------------------------------------
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----------------------------------------------ACACAGAACCCAAACGAAAACATAAACTGCTGAA
GACATCAGTTTTGTCCATCTACCACCCATCACCGCCAGCGGAGCTCTTGCTCTTTGGTTCTTGG-TACACTCGTGCCGGC
AATGCAGAAACAATATT---------------TACGGTCGC---------------TTCGACGTGAACACGCGACGACGA
CGACATATATAACCAGGCACAGAACACACCGCCATTGATA--CAGGTTCGTAGTTCGTGTATGATATT--GTCCATCCAG
TTCTTTCCAAGACTCCCTTCCTAGCTAGAGGCCAGCGTTCGGCGCGAGCCAGCCAAGGCGCGGCGGGGCGCAGCCGCAGA
GCCATGTTAAAAGGGGCGCCGGCGACGCGCCGCCGTGCAGGACCAGAGCCGGCGGCTGG----------TCTTACGGCGC
AGAACCCAGGAGGCTCTCGTGGCTGCCCTGGCCTCCCCAGGCCCTCTCCTTCCACAGCAGATCGACCTCCTCGAAGCTCA
GGCCCTTGGTCTCCGGCACGTACAGGGCCACGAAGATGAAGGCCATCACGGCGATCCCGGCGATGATCAGGAACGTGGGG
CCGGTGCCGACCCACCCCACGATCGACAGGAACGTCTGTGCCACGATCAGGTTGGAGATCCAGTTGACGGTGGCCGACAT
GCCGCCGCACATGCCGCGGTAGGCCTCGGGGTAGATCTCTGAGTTCACGGCCCATGGCACCGGCCCCATGCCCGGAGAGA
AGAAGGCGATGTACAGAGCGAGCCCTCCGACCGCGAACCACCCCAGCACGCCTTGGCAGGAACCGCTGAACAGGCTCCCG
CAGAGGCTGGACGACGACTGCAGTATGAAGGCCGTGGCGAGGATGACGAGGGAAAGCACGACGCCGGCTAGGCTTGTGAG
GGCCAGGCGGCGGCGGCCACAACGGTCGATGAGGTAGATCCCGACGATGGTTCCGCTGGCGTTCATGGCGGCGACGATGA
GGGAAAGCAGCAGGGCCAGCCTGTTGGAAGTGAACCCAGCCATCTGGACGATCGTGGGGCTGTAGTACATGACGGTGTTG
ATGCCAGTAAATTGCTGGAAGGCCTGCACGGTTCAATGTGTATACATGTTAGAAAAAGTGCCATGCATTTGTCAACTTGA
TGTTCCTACTGTATCATGCACTCAGGTAGCATAGCAAGGTAGACTATCTGCATTTCTGACAATAAAC------ACTTGAC
AAGAAACACAAAGTTGAGT------CCTGGTGGCACCCCCAAAAGGATTTAGTAACA--------GC-------------
AAAATGTCTAATTACGCTTAGTGACAATGACATGCCAGAATGGATTATCTTGAAAGGTG---------------------
----AATTTCCAGTGTACAAGCGCCTTACTTAGCGGTATTCTTAATTATCAAACTACAATGACTAAGGAGTGAGGCAGTG
GCTGAAAGTACCTGAAGGCCAGCTCCAGCAAAAAAAGCTAGCCTTAATTCCTTCAACCTGAATATGTCCAAATAGCTCCC
AGTACAGTTAGACTGGAATTCATGCATGGAAGCCGACGCAAGCAGCTCGACCTCTTCCTCCAGACGACCAGAGTCATATA
TCTGCTCCAGCACAGCAATAGCTTTGGCTTTCTCATCCTGTACAGAAAAATCAAGATAAGAACACAAAAACGGATCAAAG
GAATAAGAC--AA----------CTGAAACAAACGCCAATAACCTTCCGGTAAAGCCAGCGGGGAGATTCTGGCAGAAAA
AGCATCAGCACAAACTGTATGATTGCTGGCACGGCAGCAACTCCGAGCATCCACCGCCATGTTCCAGGAACCTATGACAA
TTAGCGTGAATA-T-ATTGCAACAAAATACTGATACAAAAACAGCTTAAAAATAACTCCACCAAACCCTATTAG--TTTT
AACAAGGATGGCGCCATCTGACCATTCC
>chr2A_281
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----------------------------------------TTAGAAACACAGAACCCAAACGAAAA-ATAAACTGCTGAA
GACATCAGTTTTGTCCATCTACCAACCATCACTGCCAGCGGAGCTCTTGCTCTTTGGTTCTTGGGTACACTCGTGCCGGC
AATGCACAAACAATACTGCCACTTCTCGGTCATACGGTCGCTTCAACTCAACCATATTCGAAGTGAACACGCGACTACGA
CAACATATATAACGAGGCACAGAACACACCGCCATTGATA--CAGGTTCGTGATTTGTGTATGATATTGCGTCCATCCAG
TTCTTTCTAAGACTCCCTTCCTAGCTAGAGGCCAGCGATCACCGCGAGCCAGCC-AGGCGCGGCGGGGCGCAGCCGCGGA
GCCATGTTAT-------GCCTGCGACGCGCCGCCGTGCAGGACCAGAGCCGGCGGGTGG----------TCTTACGGCGC
AGCACCCAGGAGGCTCTCGTGGCTGCCCTGGCTTCCCCAGGCCCTCTCCTTCCACAGCAGATCGACCTCCTCGAAGCTCA
GGCCCTTGGTCTCCGGCACGTACAGGGCCACGAAGATGAAGGCCAGCACGGCGATCCCGGCGATGATCAGGAACGTGGGG
CCGGTGCCGACCCACCCCACGATCGACAGGAACGTCTGCGCCACGATCAGGTTGGAGATCCAGTTGACGGTGGCCGACAT
GCCGCCGCACATGCCGCGGTACGCCTCGGGGTAGATCTCCGAGTTCACGGCCCACGGCACCGGCCCCATGCCCGGAGAGA
AGAAGGCGATGTACAGAGCGAGCCCTCCGACCGCGAACCACCCCAGCACGCCTTGGCAGGAACCGCTGAACAGGCTCCCG
CAGAGGCTGGACGATGACTGCAGTATGAAGGCCGTGGCGAGGATGACGAGGGAGAGCACGACCCCGGCTAGGCTTGTAAG
GGCCAGGCGGCGGCGGCCACAACGGTCGATGAGGTAGATTCCGACGATGGTTCCACTGGCATTCATGGCGGCGACGACGA
GGGACAGCAGCAGGGCCAGCCTGTTGGAAGTGAACCCAGCCATCTGGACGATCGTGGGGCTGTAGTACATGACAGTGTTG
ATGCCGGTAAATTGCTGGAAGGCCTGCATAGTTCCATATGTATACATGTCAGAAAAAGTGCCATGCATTTGTCAACTTGA
TGTTCCTACTGTATGATGCATTCAGGTAGCATAGCAAGGTAGACTAC---------------------------------
---------CAAGTTTCTTGCTTGACCTGGTGGCACTCCCAAAAGGATTTAGTACCGAAAAGTGTCTAGTTGTGTTAAAA
AAAGTGTCTAGTTACGCTTCCTGATACTGAAATGCCAAAATGGATTATCTTGGAAGGTG---------------------
----CATTTCCAGTGTACAAGCGC----CTTAGCAGTATTCGCAATTATCACACGACAATGACTGA-GAGTGAGGCAGAG
GTTAAAAGTACCTGAAGGCCAGCCCCAGCAAAAAAAGCTAGCCTTAATTCCTTCAACCTGAATATGTCCAAATAGCTCCC
AGTACAGTTAGACTGGAATTCATGCATGGAAGCCGACGCAAGCAGCTCAACCTCTTCCTCCAGACGACCAGAGTCATATA
TCTGCTCCAGGACAGCAATAGCTTTTGCTTTCTCATCCTGTACAGAAAAATCAAGATAAGAAAACAAAAACGGATCAAAG
GAATAAGAC--ATGACTGAAAGTCTGAAACAAACACCAATAACCTTCCGGTAAAGCCAGCGGGGAGATTCTGGCAGAAAA
AGCATCAGCACAAACTGTATGATTGCTGGCACGGCAGCAACTCCGAGCATCCAGCGCCATGTTCCAGGAACCTATGACAA
TTAGCGTGAATA-TTATTGCAACAAAATACTGATACAAAAACAGCTTAAAAATAACTCCACCAAACCCTATTAG--TTTT
AACAAGGATGGCGCCATATGACCATTCC
>SNPs
SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S------SS--------------------
------S------------------------------S----------------------------S-----S-------
-------------------SS-S----S---------------SS-------S---------S---------------S-
---------------------S------------------SS--------------------------------------
-----------------S-----------S--------S-----------------------------------------
S----SS--------------S---S--S---------------------S--S-----SSSSSSSSSS-----------
--------------------------------------------S---S--------S--S--S----------------
----------------------S-----S--------S--------------S--------------S-S---S--S---
--------------------------S-----------------------------------------------------
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-------------------------------------------------------------S------------------
-----------S-----------------------------------S--------------------------------
---------------------------------------------------------S--------------S-------
-------S------------------------------------------------------------------------
-----------------S---------------------------S------------------S---------------
-------------S-------------------SSSSSSSSSS-SS-------------S------SSSSSSS-------
--------S----------------------------------------S-------SSSSSSSS---------------
----S----------S-------------------------SSS--S-S-SS--SS-S-SSSSSSSSSSSSSSSSSSSSS
SSSS-------------------------S--------S-------------------S---S-SS--S------S----
-----------------S--------------------------------------------------------------
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---------------------------------------------------------------------S-S--------
-S-------SS---------------------------------------------------------------------
--------------------------------S-----S-----------------------S----------------S
S---S---S---S-----------S------S-------S--------S-----S-------SS-----S----SS----
------S----S-------------S--
>forward_599
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-------------------CCTAGCTAGAAGCCAGCGAC-----------------------------------------
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>reverse_1746
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-----------------------------------------------------------------TGGTGTGAGGTAGAG
GCTGA---------------------------------------------------------------------------
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