Multiple sequence alignment - TraesCS2B01G362100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G362100 chr2B 100.000 2324 0 0 1 2324 515011543 515013866 0.000000e+00 4292.0
1 TraesCS2B01G362100 chr2B 95.238 84 2 2 2070 2151 17118272 17118355 5.210000e-27 132.0
2 TraesCS2B01G362100 chr2B 84.615 65 6 4 383 444 737625494 737625557 6.930000e-06 62.1
3 TraesCS2B01G362100 chr2B 100.000 32 0 0 412 443 712655360 712655391 2.490000e-05 60.2
4 TraesCS2B01G362100 chr2D 92.919 1031 37 15 684 1696 436018851 436017839 0.000000e+00 1467.0
5 TraesCS2B01G362100 chr2D 96.372 634 14 4 1693 2324 436003487 436002861 0.000000e+00 1035.0
6 TraesCS2B01G362100 chr2D 82.775 209 17 6 482 678 436024525 436024324 3.970000e-38 169.0
7 TraesCS2B01G362100 chr2A 89.327 1218 52 21 483 1674 550203205 550202040 0.000000e+00 1458.0
8 TraesCS2B01G362100 chr6B 83.508 667 66 20 1693 2321 43739649 43740309 1.200000e-162 582.0
9 TraesCS2B01G362100 chr3B 79.820 555 64 29 1690 2237 30885553 30886066 6.100000e-96 361.0
10 TraesCS2B01G362100 chr3B 85.616 292 37 4 1690 1981 30858421 30858707 3.750000e-78 302.0
11 TraesCS2B01G362100 chr4A 86.288 299 32 4 1685 1981 615165082 615165373 1.340000e-82 316.0
12 TraesCS2B01G362100 chr4A 94.286 105 6 0 2034 2138 615165392 615165496 6.650000e-36 161.0
13 TraesCS2B01G362100 chrUn 82.468 308 31 14 2034 2323 228908999 228909301 4.960000e-62 248.0
14 TraesCS2B01G362100 chrUn 82.468 308 31 14 2034 2323 266693297 266693599 4.960000e-62 248.0
15 TraesCS2B01G362100 chr3A 80.523 344 36 11 1984 2302 95893641 95893304 3.860000e-58 235.0
16 TraesCS2B01G362100 chr3A 89.474 57 3 2 390 443 207218918 207218974 4.140000e-08 69.4
17 TraesCS2B01G362100 chr5D 88.636 132 13 2 2034 2163 538525748 538525879 2.390000e-35 159.0
18 TraesCS2B01G362100 chr5D 86.567 134 13 5 1851 1982 538525614 538525744 2.410000e-30 143.0
19 TraesCS2B01G362100 chr7D 85.915 71 6 2 390 456 85006763 85006693 3.200000e-09 73.1
20 TraesCS2B01G362100 chr7D 87.931 58 3 1 390 443 85006722 85006779 5.360000e-07 65.8
21 TraesCS2B01G362100 chr7D 87.931 58 3 1 390 443 237391213 237391156 5.360000e-07 65.8
22 TraesCS2B01G362100 chr7B 84.722 72 7 2 390 457 610556330 610556401 4.140000e-08 69.4
23 TraesCS2B01G362100 chr1B 85.938 64 5 2 390 449 377836988 377836925 5.360000e-07 65.8
24 TraesCS2B01G362100 chr3D 91.304 46 3 1 412 456 604826100 604826055 6.930000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G362100 chr2B 515011543 515013866 2323 False 4292 4292 100.000 1 2324 1 chr2B.!!$F2 2323
1 TraesCS2B01G362100 chr2D 436017839 436018851 1012 True 1467 1467 92.919 684 1696 1 chr2D.!!$R2 1012
2 TraesCS2B01G362100 chr2D 436002861 436003487 626 True 1035 1035 96.372 1693 2324 1 chr2D.!!$R1 631
3 TraesCS2B01G362100 chr2A 550202040 550203205 1165 True 1458 1458 89.327 483 1674 1 chr2A.!!$R1 1191
4 TraesCS2B01G362100 chr6B 43739649 43740309 660 False 582 582 83.508 1693 2321 1 chr6B.!!$F1 628
5 TraesCS2B01G362100 chr3B 30885553 30886066 513 False 361 361 79.820 1690 2237 1 chr3B.!!$F2 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
348 349 0.030101 CGATCGCTTGAGTCTCCCTC 59.97 60.0 0.26 0.0 40.89 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1447 1477 0.036952 TTCTCCGGAGCAGCAAGAAG 60.037 55.0 27.39 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.268850 GATGGCAGTCTTTGTTTATTAAGAGA 57.731 34.615 0.00 0.00 31.45 3.10
26 27 8.814038 ATGGCAGTCTTTGTTTATTAAGAGAT 57.186 30.769 0.00 0.00 31.45 2.75
27 28 8.044060 TGGCAGTCTTTGTTTATTAAGAGATG 57.956 34.615 0.00 0.00 31.45 2.90
28 29 6.969473 GGCAGTCTTTGTTTATTAAGAGATGC 59.031 38.462 0.00 0.00 40.30 3.91
29 30 6.969473 GCAGTCTTTGTTTATTAAGAGATGCC 59.031 38.462 0.00 0.00 37.82 4.40
30 31 7.362056 GCAGTCTTTGTTTATTAAGAGATGCCA 60.362 37.037 0.00 0.00 37.82 4.92
31 32 8.680903 CAGTCTTTGTTTATTAAGAGATGCCAT 58.319 33.333 0.00 0.00 31.45 4.40
32 33 9.247861 AGTCTTTGTTTATTAAGAGATGCCATT 57.752 29.630 0.00 0.00 31.45 3.16
33 34 9.860898 GTCTTTGTTTATTAAGAGATGCCATTT 57.139 29.630 0.00 0.00 31.45 2.32
117 118 8.503458 AAGAGATGACATGTTTTTAGGAGATG 57.497 34.615 0.00 0.00 0.00 2.90
118 119 7.052873 AGAGATGACATGTTTTTAGGAGATGG 58.947 38.462 0.00 0.00 0.00 3.51
119 120 5.591877 AGATGACATGTTTTTAGGAGATGGC 59.408 40.000 0.00 0.00 0.00 4.40
120 121 4.661222 TGACATGTTTTTAGGAGATGGCA 58.339 39.130 0.00 0.00 33.84 4.92
121 122 5.263599 TGACATGTTTTTAGGAGATGGCAT 58.736 37.500 0.00 0.00 31.55 4.40
122 123 5.716228 TGACATGTTTTTAGGAGATGGCATT 59.284 36.000 0.00 0.00 31.55 3.56
123 124 6.211184 TGACATGTTTTTAGGAGATGGCATTT 59.789 34.615 0.00 0.00 31.55 2.32
124 125 6.633856 ACATGTTTTTAGGAGATGGCATTTC 58.366 36.000 9.41 9.41 0.00 2.17
125 126 6.438425 ACATGTTTTTAGGAGATGGCATTTCT 59.562 34.615 16.52 4.10 0.00 2.52
126 127 6.271488 TGTTTTTAGGAGATGGCATTTCTG 57.729 37.500 16.52 0.00 0.00 3.02
127 128 5.774690 TGTTTTTAGGAGATGGCATTTCTGT 59.225 36.000 16.52 8.00 0.00 3.41
128 129 6.267471 TGTTTTTAGGAGATGGCATTTCTGTT 59.733 34.615 16.52 6.69 0.00 3.16
129 130 6.916360 TTTTAGGAGATGGCATTTCTGTTT 57.084 33.333 16.52 4.60 0.00 2.83
130 131 8.303876 GTTTTTAGGAGATGGCATTTCTGTTTA 58.696 33.333 16.52 3.79 0.00 2.01
131 132 7.391148 TTTAGGAGATGGCATTTCTGTTTAC 57.609 36.000 16.52 0.57 0.00 2.01
132 133 5.184892 AGGAGATGGCATTTCTGTTTACT 57.815 39.130 16.52 2.76 0.00 2.24
133 134 6.313519 AGGAGATGGCATTTCTGTTTACTA 57.686 37.500 16.52 0.00 0.00 1.82
134 135 6.721318 AGGAGATGGCATTTCTGTTTACTAA 58.279 36.000 16.52 0.00 0.00 2.24
135 136 6.825721 AGGAGATGGCATTTCTGTTTACTAAG 59.174 38.462 16.52 0.00 0.00 2.18
136 137 6.823689 GGAGATGGCATTTCTGTTTACTAAGA 59.176 38.462 16.52 0.00 0.00 2.10
137 138 7.011857 GGAGATGGCATTTCTGTTTACTAAGAG 59.988 40.741 16.52 0.00 0.00 2.85
138 139 7.624549 AGATGGCATTTCTGTTTACTAAGAGA 58.375 34.615 0.00 0.00 32.33 3.10
139 140 8.270744 AGATGGCATTTCTGTTTACTAAGAGAT 58.729 33.333 0.00 0.00 34.07 2.75
140 141 7.615582 TGGCATTTCTGTTTACTAAGAGATG 57.384 36.000 0.00 0.00 37.82 2.90
141 142 7.168219 TGGCATTTCTGTTTACTAAGAGATGT 58.832 34.615 5.45 0.00 37.36 3.06
142 143 7.334421 TGGCATTTCTGTTTACTAAGAGATGTC 59.666 37.037 1.97 1.97 39.09 3.06
143 144 7.334421 GGCATTTCTGTTTACTAAGAGATGTCA 59.666 37.037 3.69 0.00 38.71 3.58
144 145 8.887717 GCATTTCTGTTTACTAAGAGATGTCAT 58.112 33.333 0.00 0.00 37.36 3.06
220 221 7.977789 TGAAAATAATGTTCTCTACACAGCA 57.022 32.000 0.00 0.00 40.19 4.41
221 222 8.565896 TGAAAATAATGTTCTCTACACAGCAT 57.434 30.769 0.00 0.00 40.19 3.79
222 223 8.453320 TGAAAATAATGTTCTCTACACAGCATG 58.547 33.333 0.00 0.00 40.19 4.06
223 224 6.932356 AATAATGTTCTCTACACAGCATGG 57.068 37.500 0.00 0.00 43.62 3.66
224 225 3.988976 ATGTTCTCTACACAGCATGGT 57.011 42.857 0.00 0.00 43.62 3.55
225 226 5.420725 AATGTTCTCTACACAGCATGGTA 57.579 39.130 0.00 0.00 43.62 3.25
226 227 5.620738 ATGTTCTCTACACAGCATGGTAT 57.379 39.130 0.00 0.00 43.62 2.73
227 228 5.420725 TGTTCTCTACACAGCATGGTATT 57.579 39.130 0.00 0.00 43.62 1.89
228 229 5.804639 TGTTCTCTACACAGCATGGTATTT 58.195 37.500 0.00 0.00 43.62 1.40
229 230 6.237901 TGTTCTCTACACAGCATGGTATTTT 58.762 36.000 0.00 0.00 43.62 1.82
230 231 6.714810 TGTTCTCTACACAGCATGGTATTTTT 59.285 34.615 0.00 0.00 43.62 1.94
231 232 7.880713 TGTTCTCTACACAGCATGGTATTTTTA 59.119 33.333 0.00 0.00 43.62 1.52
232 233 8.726988 GTTCTCTACACAGCATGGTATTTTTAA 58.273 33.333 0.00 0.00 43.62 1.52
233 234 9.461312 TTCTCTACACAGCATGGTATTTTTAAT 57.539 29.630 0.00 0.00 43.62 1.40
234 235 9.461312 TCTCTACACAGCATGGTATTTTTAATT 57.539 29.630 0.00 0.00 43.62 1.40
259 260 6.978343 TTTTCAGATAATTGTGTAGTCGGG 57.022 37.500 0.00 0.00 0.00 5.14
260 261 4.054780 TCAGATAATTGTGTAGTCGGGC 57.945 45.455 0.00 0.00 0.00 6.13
261 262 3.131396 CAGATAATTGTGTAGTCGGGCC 58.869 50.000 0.00 0.00 0.00 5.80
262 263 3.039011 AGATAATTGTGTAGTCGGGCCT 58.961 45.455 0.84 0.00 0.00 5.19
263 264 2.684001 TAATTGTGTAGTCGGGCCTG 57.316 50.000 4.71 4.71 0.00 4.85
264 265 0.035439 AATTGTGTAGTCGGGCCTGG 60.035 55.000 12.87 0.00 0.00 4.45
265 266 1.910580 ATTGTGTAGTCGGGCCTGGG 61.911 60.000 12.87 0.00 0.00 4.45
266 267 3.782443 GTGTAGTCGGGCCTGGGG 61.782 72.222 12.87 0.00 0.00 4.96
269 270 4.342086 TAGTCGGGCCTGGGGGTT 62.342 66.667 12.87 0.00 34.45 4.11
275 276 4.410400 GGCCTGGGGGTTCACGAG 62.410 72.222 0.00 0.00 34.45 4.18
277 278 3.322466 CCTGGGGGTTCACGAGCT 61.322 66.667 0.00 0.00 0.00 4.09
278 279 2.266055 CTGGGGGTTCACGAGCTC 59.734 66.667 2.73 2.73 0.00 4.09
279 280 2.203788 TGGGGGTTCACGAGCTCT 60.204 61.111 12.85 0.00 0.00 4.09
280 281 2.232298 CTGGGGGTTCACGAGCTCTC 62.232 65.000 12.85 0.00 0.00 3.20
281 282 2.579738 GGGGTTCACGAGCTCTCC 59.420 66.667 12.85 6.23 0.00 3.71
282 283 2.283529 GGGGTTCACGAGCTCTCCA 61.284 63.158 12.85 0.00 0.00 3.86
283 284 1.216710 GGGTTCACGAGCTCTCCAG 59.783 63.158 12.85 0.00 0.00 3.86
296 297 3.721035 GCTCTCCAGCAAACAAAAATGT 58.279 40.909 0.00 0.00 46.06 2.71
297 298 4.122046 GCTCTCCAGCAAACAAAAATGTT 58.878 39.130 0.00 0.00 46.06 2.71
298 299 4.209911 GCTCTCCAGCAAACAAAAATGTTC 59.790 41.667 0.00 0.00 46.06 3.18
299 300 4.358851 TCTCCAGCAAACAAAAATGTTCG 58.641 39.130 0.00 0.00 0.00 3.95
300 301 2.863137 TCCAGCAAACAAAAATGTTCGC 59.137 40.909 0.00 0.00 32.35 4.70
301 302 2.865551 CCAGCAAACAAAAATGTTCGCT 59.134 40.909 1.52 1.52 42.09 4.93
303 304 2.865551 AGCAAACAAAAATGTTCGCTGG 59.134 40.909 6.36 0.00 40.14 4.85
304 305 2.607180 GCAAACAAAAATGTTCGCTGGT 59.393 40.909 0.00 0.00 29.84 4.00
305 306 3.543852 GCAAACAAAAATGTTCGCTGGTG 60.544 43.478 0.00 0.00 29.84 4.17
306 307 2.507339 ACAAAAATGTTCGCTGGTGG 57.493 45.000 0.00 0.00 0.00 4.61
307 308 2.028130 ACAAAAATGTTCGCTGGTGGA 58.972 42.857 0.00 0.00 0.00 4.02
308 309 2.627699 ACAAAAATGTTCGCTGGTGGAT 59.372 40.909 0.00 0.00 0.00 3.41
309 310 3.244976 CAAAAATGTTCGCTGGTGGATC 58.755 45.455 0.00 0.00 0.00 3.36
310 311 1.086696 AAATGTTCGCTGGTGGATCG 58.913 50.000 0.00 0.00 0.00 3.69
311 312 0.249120 AATGTTCGCTGGTGGATCGA 59.751 50.000 0.00 0.00 0.00 3.59
312 313 0.460284 ATGTTCGCTGGTGGATCGAC 60.460 55.000 0.00 0.00 31.48 4.20
313 314 1.810030 GTTCGCTGGTGGATCGACC 60.810 63.158 19.29 19.29 39.54 4.79
321 322 4.147449 TGGATCGACCAGCCAGCG 62.147 66.667 3.02 0.00 44.64 5.18
322 323 3.838271 GGATCGACCAGCCAGCGA 61.838 66.667 0.00 0.00 38.79 4.93
323 324 2.184322 GATCGACCAGCCAGCGAA 59.816 61.111 0.00 0.00 37.60 4.70
324 325 2.125512 ATCGACCAGCCAGCGAAC 60.126 61.111 0.00 0.00 37.60 3.95
325 326 3.989698 ATCGACCAGCCAGCGAACG 62.990 63.158 0.00 0.00 37.60 3.95
326 327 4.717629 CGACCAGCCAGCGAACGA 62.718 66.667 0.00 0.00 0.00 3.85
327 328 2.357034 GACCAGCCAGCGAACGAA 60.357 61.111 0.00 0.00 0.00 3.85
328 329 1.959226 GACCAGCCAGCGAACGAAA 60.959 57.895 0.00 0.00 0.00 3.46
329 330 2.171489 GACCAGCCAGCGAACGAAAC 62.171 60.000 0.00 0.00 0.00 2.78
330 331 2.170985 CAGCCAGCGAACGAAACG 59.829 61.111 0.00 0.00 0.00 3.60
331 332 2.028484 AGCCAGCGAACGAAACGA 59.972 55.556 0.00 0.00 0.00 3.85
332 333 1.374252 AGCCAGCGAACGAAACGAT 60.374 52.632 0.00 0.00 0.00 3.73
333 334 1.058903 GCCAGCGAACGAAACGATC 59.941 57.895 0.00 0.00 0.00 3.69
343 344 1.618861 CGAAACGATCGCTTGAGTCT 58.381 50.000 16.60 0.00 45.89 3.24
344 345 1.579808 CGAAACGATCGCTTGAGTCTC 59.420 52.381 16.60 2.63 45.89 3.36
345 346 1.921230 GAAACGATCGCTTGAGTCTCC 59.079 52.381 16.60 0.00 0.00 3.71
346 347 0.173708 AACGATCGCTTGAGTCTCCC 59.826 55.000 16.60 0.00 0.00 4.30
347 348 0.681564 ACGATCGCTTGAGTCTCCCT 60.682 55.000 16.60 0.00 0.00 4.20
348 349 0.030101 CGATCGCTTGAGTCTCCCTC 59.970 60.000 0.26 0.00 40.89 4.30
354 355 4.120244 TGAGTCTCCCTCACTGGC 57.880 61.111 0.00 0.00 45.34 4.85
355 356 1.979155 TGAGTCTCCCTCACTGGCG 60.979 63.158 0.00 0.00 45.34 5.69
356 357 1.979693 GAGTCTCCCTCACTGGCGT 60.980 63.158 0.00 0.00 40.17 5.68
357 358 1.534235 AGTCTCCCTCACTGGCGTT 60.534 57.895 0.00 0.00 0.00 4.84
358 359 1.122019 AGTCTCCCTCACTGGCGTTT 61.122 55.000 0.00 0.00 0.00 3.60
359 360 0.250338 GTCTCCCTCACTGGCGTTTT 60.250 55.000 0.00 0.00 0.00 2.43
360 361 0.250295 TCTCCCTCACTGGCGTTTTG 60.250 55.000 0.00 0.00 0.00 2.44
361 362 0.535102 CTCCCTCACTGGCGTTTTGT 60.535 55.000 0.00 0.00 0.00 2.83
362 363 0.534203 TCCCTCACTGGCGTTTTGTC 60.534 55.000 0.00 0.00 0.00 3.18
363 364 1.569493 CCTCACTGGCGTTTTGTCG 59.431 57.895 0.00 0.00 0.00 4.35
375 376 4.710528 CGTTTTGTCGCTCTTTTCTAGT 57.289 40.909 0.00 0.00 0.00 2.57
376 377 5.817616 CGTTTTGTCGCTCTTTTCTAGTA 57.182 39.130 0.00 0.00 0.00 1.82
377 378 5.596922 CGTTTTGTCGCTCTTTTCTAGTAC 58.403 41.667 0.00 0.00 0.00 2.73
378 379 5.401674 CGTTTTGTCGCTCTTTTCTAGTACT 59.598 40.000 0.00 0.00 0.00 2.73
379 380 6.074463 CGTTTTGTCGCTCTTTTCTAGTACTT 60.074 38.462 0.00 0.00 0.00 2.24
380 381 7.282200 GTTTTGTCGCTCTTTTCTAGTACTTC 58.718 38.462 0.00 0.00 0.00 3.01
381 382 5.056894 TGTCGCTCTTTTCTAGTACTTCC 57.943 43.478 0.00 0.00 0.00 3.46
382 383 4.765856 TGTCGCTCTTTTCTAGTACTTCCT 59.234 41.667 0.00 0.00 0.00 3.36
383 384 5.106237 TGTCGCTCTTTTCTAGTACTTCCTC 60.106 44.000 0.00 0.00 0.00 3.71
384 385 4.398673 TCGCTCTTTTCTAGTACTTCCTCC 59.601 45.833 0.00 0.00 0.00 4.30
385 386 4.158025 CGCTCTTTTCTAGTACTTCCTCCA 59.842 45.833 0.00 0.00 0.00 3.86
386 387 5.163499 CGCTCTTTTCTAGTACTTCCTCCAT 60.163 44.000 0.00 0.00 0.00 3.41
387 388 6.277605 GCTCTTTTCTAGTACTTCCTCCATC 58.722 44.000 0.00 0.00 0.00 3.51
388 389 6.684362 GCTCTTTTCTAGTACTTCCTCCATCC 60.684 46.154 0.00 0.00 0.00 3.51
389 390 5.360144 TCTTTTCTAGTACTTCCTCCATCCG 59.640 44.000 0.00 0.00 0.00 4.18
390 391 3.947612 TCTAGTACTTCCTCCATCCGT 57.052 47.619 0.00 0.00 0.00 4.69
391 392 3.552875 TCTAGTACTTCCTCCATCCGTG 58.447 50.000 0.00 0.00 0.00 4.94
392 393 2.526888 AGTACTTCCTCCATCCGTGA 57.473 50.000 0.00 0.00 0.00 4.35
393 394 3.033659 AGTACTTCCTCCATCCGTGAT 57.966 47.619 0.00 0.00 0.00 3.06
394 395 3.375699 AGTACTTCCTCCATCCGTGATT 58.624 45.455 0.00 0.00 0.00 2.57
395 396 2.990066 ACTTCCTCCATCCGTGATTC 57.010 50.000 0.00 0.00 0.00 2.52
396 397 2.187958 ACTTCCTCCATCCGTGATTCA 58.812 47.619 0.00 0.00 0.00 2.57
397 398 2.571653 ACTTCCTCCATCCGTGATTCAA 59.428 45.455 0.00 0.00 0.00 2.69
398 399 2.691409 TCCTCCATCCGTGATTCAAC 57.309 50.000 0.00 0.00 0.00 3.18
399 400 2.187958 TCCTCCATCCGTGATTCAACT 58.812 47.619 0.00 0.00 0.00 3.16
400 401 2.571653 TCCTCCATCCGTGATTCAACTT 59.428 45.455 0.00 0.00 0.00 2.66
401 402 3.009033 TCCTCCATCCGTGATTCAACTTT 59.991 43.478 0.00 0.00 0.00 2.66
402 403 4.224147 TCCTCCATCCGTGATTCAACTTTA 59.776 41.667 0.00 0.00 0.00 1.85
403 404 5.104527 TCCTCCATCCGTGATTCAACTTTAT 60.105 40.000 0.00 0.00 0.00 1.40
404 405 6.099125 TCCTCCATCCGTGATTCAACTTTATA 59.901 38.462 0.00 0.00 0.00 0.98
405 406 6.202954 CCTCCATCCGTGATTCAACTTTATAC 59.797 42.308 0.00 0.00 0.00 1.47
406 407 6.884832 TCCATCCGTGATTCAACTTTATACT 58.115 36.000 0.00 0.00 0.00 2.12
407 408 8.014070 TCCATCCGTGATTCAACTTTATACTA 57.986 34.615 0.00 0.00 0.00 1.82
408 409 8.141909 TCCATCCGTGATTCAACTTTATACTAG 58.858 37.037 0.00 0.00 0.00 2.57
409 410 7.095607 CCATCCGTGATTCAACTTTATACTAGC 60.096 40.741 0.00 0.00 0.00 3.42
410 411 7.108841 TCCGTGATTCAACTTTATACTAGCT 57.891 36.000 0.00 0.00 0.00 3.32
411 412 7.553334 TCCGTGATTCAACTTTATACTAGCTT 58.447 34.615 0.00 0.00 0.00 3.74
412 413 8.689061 TCCGTGATTCAACTTTATACTAGCTTA 58.311 33.333 0.00 0.00 0.00 3.09
413 414 8.753175 CCGTGATTCAACTTTATACTAGCTTAC 58.247 37.037 0.00 0.00 0.00 2.34
414 415 9.297586 CGTGATTCAACTTTATACTAGCTTACA 57.702 33.333 0.00 0.00 0.00 2.41
420 421 9.350357 TCAACTTTATACTAGCTTACAAAGTCG 57.650 33.333 3.02 0.00 35.71 4.18
421 422 9.350357 CAACTTTATACTAGCTTACAAAGTCGA 57.650 33.333 3.02 0.00 35.71 4.20
422 423 9.570488 AACTTTATACTAGCTTACAAAGTCGAG 57.430 33.333 3.02 0.00 35.71 4.04
423 424 8.738106 ACTTTATACTAGCTTACAAAGTCGAGT 58.262 33.333 0.00 0.00 32.31 4.18
424 425 9.224058 CTTTATACTAGCTTACAAAGTCGAGTC 57.776 37.037 0.00 0.00 0.00 3.36
425 426 6.754702 ATACTAGCTTACAAAGTCGAGTCA 57.245 37.500 0.00 0.00 0.00 3.41
426 427 4.796369 ACTAGCTTACAAAGTCGAGTCAC 58.204 43.478 0.00 0.00 0.00 3.67
427 428 4.519730 ACTAGCTTACAAAGTCGAGTCACT 59.480 41.667 0.00 0.00 0.00 3.41
428 429 4.323553 AGCTTACAAAGTCGAGTCACTT 57.676 40.909 0.00 3.11 38.30 3.16
429 430 5.449107 AGCTTACAAAGTCGAGTCACTTA 57.551 39.130 0.00 0.00 35.45 2.24
430 431 6.026947 AGCTTACAAAGTCGAGTCACTTAT 57.973 37.500 0.00 4.10 35.45 1.73
431 432 6.456501 AGCTTACAAAGTCGAGTCACTTATT 58.543 36.000 0.00 2.93 35.45 1.40
432 433 6.929606 AGCTTACAAAGTCGAGTCACTTATTT 59.070 34.615 0.00 1.15 35.45 1.40
433 434 7.441458 AGCTTACAAAGTCGAGTCACTTATTTT 59.559 33.333 0.00 0.00 35.45 1.82
434 435 7.530861 GCTTACAAAGTCGAGTCACTTATTTTG 59.469 37.037 0.00 7.24 35.45 2.44
435 436 6.300354 ACAAAGTCGAGTCACTTATTTTGG 57.700 37.500 11.39 0.00 35.45 3.28
436 437 5.238650 ACAAAGTCGAGTCACTTATTTTGGG 59.761 40.000 11.39 0.00 35.45 4.12
437 438 4.884668 AGTCGAGTCACTTATTTTGGGA 57.115 40.909 0.00 0.00 0.00 4.37
438 439 5.422214 AGTCGAGTCACTTATTTTGGGAT 57.578 39.130 0.00 0.00 0.00 3.85
439 440 5.178797 AGTCGAGTCACTTATTTTGGGATG 58.821 41.667 0.00 0.00 0.00 3.51
440 441 4.332819 GTCGAGTCACTTATTTTGGGATGG 59.667 45.833 0.00 0.00 0.00 3.51
441 442 4.224147 TCGAGTCACTTATTTTGGGATGGA 59.776 41.667 0.00 0.00 0.00 3.41
442 443 4.572389 CGAGTCACTTATTTTGGGATGGAG 59.428 45.833 0.00 0.00 0.00 3.86
443 444 5.626809 CGAGTCACTTATTTTGGGATGGAGA 60.627 44.000 0.00 0.00 0.00 3.71
444 445 6.139679 AGTCACTTATTTTGGGATGGAGAA 57.860 37.500 0.00 0.00 0.00 2.87
445 446 6.552008 AGTCACTTATTTTGGGATGGAGAAA 58.448 36.000 0.00 0.00 0.00 2.52
446 447 7.010160 AGTCACTTATTTTGGGATGGAGAAAA 58.990 34.615 0.00 0.00 0.00 2.29
447 448 7.675619 AGTCACTTATTTTGGGATGGAGAAAAT 59.324 33.333 0.00 0.00 34.49 1.82
448 449 8.966868 GTCACTTATTTTGGGATGGAGAAAATA 58.033 33.333 0.00 0.00 32.78 1.40
449 450 9.713684 TCACTTATTTTGGGATGGAGAAAATAT 57.286 29.630 0.00 0.00 33.64 1.28
459 460 9.920946 TGGGATGGAGAAAATATTATATAAGGC 57.079 33.333 1.02 0.00 0.00 4.35
460 461 9.057089 GGGATGGAGAAAATATTATATAAGGCG 57.943 37.037 1.02 0.00 0.00 5.52
461 462 9.614792 GGATGGAGAAAATATTATATAAGGCGT 57.385 33.333 1.02 0.00 0.00 5.68
463 464 9.959721 ATGGAGAAAATATTATATAAGGCGTGT 57.040 29.630 1.02 0.00 0.00 4.49
477 478 5.734855 AAGGCGTGTATATTGATGTTGTC 57.265 39.130 0.00 0.00 0.00 3.18
478 479 5.023533 AGGCGTGTATATTGATGTTGTCT 57.976 39.130 0.00 0.00 0.00 3.41
479 480 5.428253 AGGCGTGTATATTGATGTTGTCTT 58.572 37.500 0.00 0.00 0.00 3.01
480 481 5.294306 AGGCGTGTATATTGATGTTGTCTTG 59.706 40.000 0.00 0.00 0.00 3.02
481 482 5.293324 GGCGTGTATATTGATGTTGTCTTGA 59.707 40.000 0.00 0.00 0.00 3.02
492 493 9.661563 ATTGATGTTGTCTTGAAATAAATGCAT 57.338 25.926 0.00 0.00 0.00 3.96
499 500 5.008613 GTCTTGAAATAAATGCATAGGCGGA 59.991 40.000 0.00 0.00 45.35 5.54
500 501 5.592282 TCTTGAAATAAATGCATAGGCGGAA 59.408 36.000 0.00 0.00 45.35 4.30
501 502 5.843673 TGAAATAAATGCATAGGCGGAAA 57.156 34.783 0.00 0.00 45.35 3.13
619 621 9.461312 TGTGAATATAAAACTAAGGCATTCAGT 57.539 29.630 0.00 0.00 33.08 3.41
626 628 2.912956 ACTAAGGCATTCAGTTGGAGGA 59.087 45.455 0.00 0.00 0.00 3.71
632 634 2.887152 GCATTCAGTTGGAGGAAGTGTT 59.113 45.455 0.00 0.00 36.50 3.32
652 654 3.603158 TCTGCCGAGTTTATTGCTGTA 57.397 42.857 0.00 0.00 0.00 2.74
657 659 2.613691 CGAGTTTATTGCTGTACCCGT 58.386 47.619 0.00 0.00 0.00 5.28
695 697 2.854777 CACCTATATATTCTCTGCGCGC 59.145 50.000 27.26 27.26 0.00 6.86
717 719 1.880340 GTGCGGAGGATCGAGCTTG 60.880 63.158 0.00 0.00 39.60 4.01
757 759 5.346782 AGAGAGATTATAGGAGGCCAGAA 57.653 43.478 5.01 0.00 0.00 3.02
758 760 5.332743 AGAGAGATTATAGGAGGCCAGAAG 58.667 45.833 5.01 0.00 0.00 2.85
759 761 3.837731 AGAGATTATAGGAGGCCAGAAGC 59.162 47.826 5.01 0.00 42.60 3.86
805 807 3.478394 GATCGTGTGCGCGCAGAA 61.478 61.111 37.44 23.78 38.14 3.02
827 829 8.696374 CAGAAGAATAGGTCATGGAGTTAGTTA 58.304 37.037 0.00 0.00 0.00 2.24
831 833 8.478877 AGAATAGGTCATGGAGTTAGTTAGTTG 58.521 37.037 0.00 0.00 0.00 3.16
832 834 7.973048 ATAGGTCATGGAGTTAGTTAGTTGA 57.027 36.000 0.00 0.00 0.00 3.18
833 835 6.875972 AGGTCATGGAGTTAGTTAGTTGAT 57.124 37.500 0.00 0.00 0.00 2.57
834 836 7.259088 AGGTCATGGAGTTAGTTAGTTGATT 57.741 36.000 0.00 0.00 0.00 2.57
835 837 7.106239 AGGTCATGGAGTTAGTTAGTTGATTG 58.894 38.462 0.00 0.00 0.00 2.67
836 838 7.038302 AGGTCATGGAGTTAGTTAGTTGATTGA 60.038 37.037 0.00 0.00 0.00 2.57
837 839 7.064728 GGTCATGGAGTTAGTTAGTTGATTGAC 59.935 40.741 0.00 0.00 0.00 3.18
867 869 4.651008 CGTACGGCCGGTGTGTGT 62.651 66.667 31.76 9.01 0.00 3.72
868 870 3.039588 GTACGGCCGGTGTGTGTG 61.040 66.667 31.76 0.00 0.00 3.82
881 883 4.155099 CGGTGTGTGTGGCATAATTAAGAA 59.845 41.667 0.00 0.00 0.00 2.52
919 930 2.380084 TTATCGAAGGTGTGTGCCTC 57.620 50.000 0.00 0.00 38.03 4.70
933 944 0.956633 TGCCTCGAGTACGTGAAAGT 59.043 50.000 12.31 0.00 40.69 2.66
953 964 5.317733 AGTGAAACAACCGAGAGAGATAG 57.682 43.478 0.00 0.00 41.43 2.08
954 965 4.158764 AGTGAAACAACCGAGAGAGATAGG 59.841 45.833 0.00 0.00 41.43 2.57
990 1015 7.197017 ACTACAACTTAATCGATCTAGTGCTG 58.803 38.462 11.73 10.06 0.00 4.41
994 1019 0.598680 AATCGATCTAGTGCTGCGGC 60.599 55.000 11.65 11.65 39.26 6.53
1033 1058 3.851128 GGCTCTACGTGCCCCTCC 61.851 72.222 4.06 0.00 44.32 4.30
1035 1060 2.359967 GCTCTACGTGCCCCTCCTT 61.360 63.158 0.00 0.00 0.00 3.36
1062 1087 2.680913 CCTGGCCGTCGCTTTTCTG 61.681 63.158 0.00 0.00 34.44 3.02
1436 1466 4.741781 GATGTGGCGTGCGTGCAC 62.742 66.667 14.81 14.81 43.01 4.57
1451 1481 3.710722 CACCGGCCTGCTCCTTCT 61.711 66.667 0.00 0.00 0.00 2.85
1452 1482 2.930562 ACCGGCCTGCTCCTTCTT 60.931 61.111 0.00 0.00 0.00 2.52
1453 1483 2.437359 CCGGCCTGCTCCTTCTTG 60.437 66.667 0.00 0.00 0.00 3.02
1454 1484 3.130160 CGGCCTGCTCCTTCTTGC 61.130 66.667 0.00 0.00 0.00 4.01
1455 1485 2.354343 GGCCTGCTCCTTCTTGCT 59.646 61.111 0.00 0.00 0.00 3.91
1456 1486 2.045131 GGCCTGCTCCTTCTTGCTG 61.045 63.158 0.00 0.00 0.00 4.41
1457 1487 2.698763 GCCTGCTCCTTCTTGCTGC 61.699 63.158 0.00 0.00 0.00 5.25
1458 1488 1.002379 CCTGCTCCTTCTTGCTGCT 60.002 57.895 0.00 0.00 0.00 4.24
1698 1753 9.708092 GTTTATTACTCCCTCCAATCTATACAC 57.292 37.037 0.00 0.00 0.00 2.90
1719 1774 7.440523 ACACTTACTAAGCTCCTTTGAAATG 57.559 36.000 0.00 0.00 0.00 2.32
1720 1775 6.072452 ACACTTACTAAGCTCCTTTGAAATGC 60.072 38.462 0.00 0.00 0.00 3.56
1721 1776 6.150140 CACTTACTAAGCTCCTTTGAAATGCT 59.850 38.462 0.00 0.00 35.30 3.79
1725 1780 2.720915 AGCTCCTTTGAAATGCTCTCC 58.279 47.619 0.00 0.00 0.00 3.71
1726 1781 2.308275 AGCTCCTTTGAAATGCTCTCCT 59.692 45.455 0.00 0.00 0.00 3.69
1727 1782 2.422832 GCTCCTTTGAAATGCTCTCCTG 59.577 50.000 0.00 0.00 0.00 3.86
1728 1783 3.015327 CTCCTTTGAAATGCTCTCCTGG 58.985 50.000 0.00 0.00 0.00 4.45
1735 1790 1.919600 AATGCTCTCCTGGTCCTGGC 61.920 60.000 9.96 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.268850 TCTCTTAATAAACAAAGACTGCCATC 57.731 34.615 0.00 0.00 0.00 3.51
1 2 8.680903 CATCTCTTAATAAACAAAGACTGCCAT 58.319 33.333 0.00 0.00 0.00 4.40
2 3 7.362056 GCATCTCTTAATAAACAAAGACTGCCA 60.362 37.037 0.00 0.00 0.00 4.92
3 4 6.969473 GCATCTCTTAATAAACAAAGACTGCC 59.031 38.462 0.00 0.00 0.00 4.85
4 5 6.969473 GGCATCTCTTAATAAACAAAGACTGC 59.031 38.462 0.00 0.00 0.00 4.40
5 6 8.044060 TGGCATCTCTTAATAAACAAAGACTG 57.956 34.615 0.00 0.00 0.00 3.51
6 7 8.814038 ATGGCATCTCTTAATAAACAAAGACT 57.186 30.769 0.00 0.00 0.00 3.24
7 8 9.860898 AAATGGCATCTCTTAATAAACAAAGAC 57.139 29.630 0.00 0.00 0.00 3.01
91 92 9.605275 CATCTCCTAAAAACATGTCATCTCTTA 57.395 33.333 0.00 0.00 0.00 2.10
92 93 7.555554 CCATCTCCTAAAAACATGTCATCTCTT 59.444 37.037 0.00 0.00 0.00 2.85
93 94 7.052873 CCATCTCCTAAAAACATGTCATCTCT 58.947 38.462 0.00 0.00 0.00 3.10
94 95 6.238593 GCCATCTCCTAAAAACATGTCATCTC 60.239 42.308 0.00 0.00 0.00 2.75
95 96 5.591877 GCCATCTCCTAAAAACATGTCATCT 59.408 40.000 0.00 0.00 0.00 2.90
96 97 5.357878 TGCCATCTCCTAAAAACATGTCATC 59.642 40.000 0.00 0.00 0.00 2.92
97 98 5.263599 TGCCATCTCCTAAAAACATGTCAT 58.736 37.500 0.00 0.00 0.00 3.06
98 99 4.661222 TGCCATCTCCTAAAAACATGTCA 58.339 39.130 0.00 0.00 0.00 3.58
99 100 5.841957 ATGCCATCTCCTAAAAACATGTC 57.158 39.130 0.00 0.00 0.00 3.06
100 101 6.438425 AGAAATGCCATCTCCTAAAAACATGT 59.562 34.615 0.00 0.00 0.00 3.21
101 102 6.755141 CAGAAATGCCATCTCCTAAAAACATG 59.245 38.462 0.00 0.00 0.00 3.21
102 103 6.438425 ACAGAAATGCCATCTCCTAAAAACAT 59.562 34.615 0.00 0.00 0.00 2.71
103 104 5.774690 ACAGAAATGCCATCTCCTAAAAACA 59.225 36.000 0.00 0.00 0.00 2.83
104 105 6.272822 ACAGAAATGCCATCTCCTAAAAAC 57.727 37.500 0.00 0.00 0.00 2.43
105 106 6.916360 AACAGAAATGCCATCTCCTAAAAA 57.084 33.333 0.00 0.00 0.00 1.94
106 107 6.916360 AAACAGAAATGCCATCTCCTAAAA 57.084 33.333 0.00 0.00 0.00 1.52
107 108 7.175104 AGTAAACAGAAATGCCATCTCCTAAA 58.825 34.615 0.00 0.00 0.00 1.85
108 109 6.721318 AGTAAACAGAAATGCCATCTCCTAA 58.279 36.000 0.00 0.00 0.00 2.69
109 110 6.313519 AGTAAACAGAAATGCCATCTCCTA 57.686 37.500 0.00 0.00 0.00 2.94
110 111 5.184892 AGTAAACAGAAATGCCATCTCCT 57.815 39.130 0.00 0.00 0.00 3.69
111 112 6.823689 TCTTAGTAAACAGAAATGCCATCTCC 59.176 38.462 0.00 0.00 0.00 3.71
112 113 7.766278 TCTCTTAGTAAACAGAAATGCCATCTC 59.234 37.037 0.00 0.00 0.00 2.75
113 114 7.624549 TCTCTTAGTAAACAGAAATGCCATCT 58.375 34.615 0.00 0.00 0.00 2.90
114 115 7.849804 TCTCTTAGTAAACAGAAATGCCATC 57.150 36.000 0.00 0.00 0.00 3.51
115 116 7.831193 ACATCTCTTAGTAAACAGAAATGCCAT 59.169 33.333 0.00 0.00 0.00 4.40
116 117 7.168219 ACATCTCTTAGTAAACAGAAATGCCA 58.832 34.615 0.00 0.00 0.00 4.92
117 118 7.334421 TGACATCTCTTAGTAAACAGAAATGCC 59.666 37.037 0.00 0.00 0.00 4.40
118 119 8.256611 TGACATCTCTTAGTAAACAGAAATGC 57.743 34.615 0.00 0.00 0.00 3.56
194 195 9.665719 TGCTGTGTAGAGAACATTATTTTCATA 57.334 29.630 0.00 0.00 41.10 2.15
195 196 8.565896 TGCTGTGTAGAGAACATTATTTTCAT 57.434 30.769 0.00 0.00 41.10 2.57
196 197 7.977789 TGCTGTGTAGAGAACATTATTTTCA 57.022 32.000 0.00 0.00 41.10 2.69
197 198 7.912250 CCATGCTGTGTAGAGAACATTATTTTC 59.088 37.037 0.00 0.00 41.10 2.29
198 199 7.394359 ACCATGCTGTGTAGAGAACATTATTTT 59.606 33.333 0.00 0.00 41.10 1.82
199 200 6.886459 ACCATGCTGTGTAGAGAACATTATTT 59.114 34.615 0.00 0.00 41.10 1.40
200 201 6.418101 ACCATGCTGTGTAGAGAACATTATT 58.582 36.000 0.00 0.00 41.10 1.40
201 202 5.994250 ACCATGCTGTGTAGAGAACATTAT 58.006 37.500 0.00 0.00 41.10 1.28
202 203 5.420725 ACCATGCTGTGTAGAGAACATTA 57.579 39.130 0.00 0.00 41.10 1.90
203 204 4.292186 ACCATGCTGTGTAGAGAACATT 57.708 40.909 0.00 0.00 41.10 2.71
204 205 3.988976 ACCATGCTGTGTAGAGAACAT 57.011 42.857 0.00 0.00 41.10 2.71
205 206 5.420725 AATACCATGCTGTGTAGAGAACA 57.579 39.130 0.00 0.00 35.06 3.18
206 207 6.743575 AAAATACCATGCTGTGTAGAGAAC 57.256 37.500 0.00 0.00 0.00 3.01
207 208 8.856153 TTAAAAATACCATGCTGTGTAGAGAA 57.144 30.769 0.00 0.00 0.00 2.87
208 209 9.461312 AATTAAAAATACCATGCTGTGTAGAGA 57.539 29.630 0.00 0.00 0.00 3.10
233 234 9.104965 CCCGACTACACAATTATCTGAAAATAA 57.895 33.333 0.00 0.00 0.00 1.40
234 235 7.225931 GCCCGACTACACAATTATCTGAAAATA 59.774 37.037 0.00 0.00 0.00 1.40
235 236 6.038271 GCCCGACTACACAATTATCTGAAAAT 59.962 38.462 0.00 0.00 0.00 1.82
236 237 5.353123 GCCCGACTACACAATTATCTGAAAA 59.647 40.000 0.00 0.00 0.00 2.29
237 238 4.873827 GCCCGACTACACAATTATCTGAAA 59.126 41.667 0.00 0.00 0.00 2.69
238 239 4.439057 GCCCGACTACACAATTATCTGAA 58.561 43.478 0.00 0.00 0.00 3.02
239 240 3.181469 GGCCCGACTACACAATTATCTGA 60.181 47.826 0.00 0.00 0.00 3.27
240 241 3.131396 GGCCCGACTACACAATTATCTG 58.869 50.000 0.00 0.00 0.00 2.90
241 242 3.039011 AGGCCCGACTACACAATTATCT 58.961 45.455 0.00 0.00 0.00 1.98
242 243 3.131396 CAGGCCCGACTACACAATTATC 58.869 50.000 0.00 0.00 0.00 1.75
243 244 2.158813 CCAGGCCCGACTACACAATTAT 60.159 50.000 0.00 0.00 0.00 1.28
244 245 1.208535 CCAGGCCCGACTACACAATTA 59.791 52.381 0.00 0.00 0.00 1.40
245 246 0.035439 CCAGGCCCGACTACACAATT 60.035 55.000 0.00 0.00 0.00 2.32
246 247 1.602237 CCAGGCCCGACTACACAAT 59.398 57.895 0.00 0.00 0.00 2.71
247 248 2.589157 CCCAGGCCCGACTACACAA 61.589 63.158 0.00 0.00 0.00 3.33
248 249 3.000819 CCCAGGCCCGACTACACA 61.001 66.667 0.00 0.00 0.00 3.72
249 250 3.782443 CCCCAGGCCCGACTACAC 61.782 72.222 0.00 0.00 0.00 2.90
252 253 4.342086 AACCCCCAGGCCCGACTA 62.342 66.667 0.00 0.00 36.11 2.59
258 259 4.410400 CTCGTGAACCCCCAGGCC 62.410 72.222 0.00 0.00 36.11 5.19
260 261 3.316573 GAGCTCGTGAACCCCCAGG 62.317 68.421 0.00 0.00 40.04 4.45
261 262 2.232298 GAGAGCTCGTGAACCCCCAG 62.232 65.000 8.37 0.00 0.00 4.45
262 263 2.203788 AGAGCTCGTGAACCCCCA 60.204 61.111 8.37 0.00 0.00 4.96
263 264 2.579738 GAGAGCTCGTGAACCCCC 59.420 66.667 8.37 0.00 0.00 5.40
264 265 2.232298 CTGGAGAGCTCGTGAACCCC 62.232 65.000 8.37 3.19 0.00 4.95
265 266 1.216710 CTGGAGAGCTCGTGAACCC 59.783 63.158 8.37 4.90 0.00 4.11
266 267 1.446966 GCTGGAGAGCTCGTGAACC 60.447 63.158 8.37 8.75 42.52 3.62
267 268 0.319900 TTGCTGGAGAGCTCGTGAAC 60.320 55.000 8.37 0.00 46.39 3.18
268 269 0.392706 TTTGCTGGAGAGCTCGTGAA 59.607 50.000 8.37 0.00 46.39 3.18
269 270 0.319900 GTTTGCTGGAGAGCTCGTGA 60.320 55.000 8.37 0.00 46.39 4.35
270 271 0.601046 TGTTTGCTGGAGAGCTCGTG 60.601 55.000 8.37 1.09 46.39 4.35
271 272 0.106708 TTGTTTGCTGGAGAGCTCGT 59.893 50.000 8.37 0.00 46.39 4.18
272 273 1.229428 TTTGTTTGCTGGAGAGCTCG 58.771 50.000 8.37 0.00 46.39 5.03
273 274 3.715628 TTTTTGTTTGCTGGAGAGCTC 57.284 42.857 5.27 5.27 46.39 4.09
274 275 3.385755 ACATTTTTGTTTGCTGGAGAGCT 59.614 39.130 0.00 0.00 46.39 4.09
275 276 3.721035 ACATTTTTGTTTGCTGGAGAGC 58.279 40.909 0.00 0.00 46.44 4.09
276 277 4.442073 CGAACATTTTTGTTTGCTGGAGAG 59.558 41.667 0.00 0.00 31.35 3.20
277 278 4.358851 CGAACATTTTTGTTTGCTGGAGA 58.641 39.130 0.00 0.00 31.35 3.71
278 279 4.697300 CGAACATTTTTGTTTGCTGGAG 57.303 40.909 0.00 0.00 31.35 3.86
284 285 3.001127 CCACCAGCGAACATTTTTGTTTG 59.999 43.478 2.39 2.39 36.51 2.93
285 286 3.118956 TCCACCAGCGAACATTTTTGTTT 60.119 39.130 0.00 0.00 31.35 2.83
286 287 2.428890 TCCACCAGCGAACATTTTTGTT 59.571 40.909 0.00 0.00 34.29 2.83
287 288 2.028130 TCCACCAGCGAACATTTTTGT 58.972 42.857 0.00 0.00 0.00 2.83
288 289 2.791383 TCCACCAGCGAACATTTTTG 57.209 45.000 0.00 0.00 0.00 2.44
289 290 2.095263 CGATCCACCAGCGAACATTTTT 60.095 45.455 0.00 0.00 0.00 1.94
290 291 1.468520 CGATCCACCAGCGAACATTTT 59.531 47.619 0.00 0.00 0.00 1.82
291 292 1.086696 CGATCCACCAGCGAACATTT 58.913 50.000 0.00 0.00 0.00 2.32
292 293 0.249120 TCGATCCACCAGCGAACATT 59.751 50.000 0.00 0.00 0.00 2.71
293 294 0.460284 GTCGATCCACCAGCGAACAT 60.460 55.000 0.00 0.00 35.66 2.71
294 295 1.080093 GTCGATCCACCAGCGAACA 60.080 57.895 0.00 0.00 35.66 3.18
295 296 1.810030 GGTCGATCCACCAGCGAAC 60.810 63.158 4.40 0.00 36.32 3.95
296 297 2.279810 TGGTCGATCCACCAGCGAA 61.280 57.895 8.27 0.00 41.84 4.70
297 298 2.678580 TGGTCGATCCACCAGCGA 60.679 61.111 8.27 0.00 41.84 4.93
301 302 2.606213 TGGCTGGTCGATCCACCA 60.606 61.111 11.98 11.98 44.69 4.17
302 303 2.187946 CTGGCTGGTCGATCCACC 59.812 66.667 1.97 1.97 41.93 4.61
303 304 2.512515 GCTGGCTGGTCGATCCAC 60.513 66.667 0.00 0.00 41.93 4.02
304 305 4.147449 CGCTGGCTGGTCGATCCA 62.147 66.667 0.00 0.00 45.01 3.41
305 306 3.371097 TTCGCTGGCTGGTCGATCC 62.371 63.158 0.00 0.00 31.96 3.36
306 307 2.167861 GTTCGCTGGCTGGTCGATC 61.168 63.158 0.00 0.00 31.96 3.69
307 308 2.125512 GTTCGCTGGCTGGTCGAT 60.126 61.111 0.00 0.00 31.96 3.59
308 309 4.717629 CGTTCGCTGGCTGGTCGA 62.718 66.667 0.00 0.00 0.00 4.20
309 310 4.717629 TCGTTCGCTGGCTGGTCG 62.718 66.667 0.00 0.00 0.00 4.79
310 311 1.959226 TTTCGTTCGCTGGCTGGTC 60.959 57.895 0.00 0.00 0.00 4.02
311 312 2.110213 TTTCGTTCGCTGGCTGGT 59.890 55.556 0.00 0.00 0.00 4.00
312 313 2.556287 GTTTCGTTCGCTGGCTGG 59.444 61.111 0.00 0.00 0.00 4.85
313 314 1.626654 ATCGTTTCGTTCGCTGGCTG 61.627 55.000 0.00 0.00 0.00 4.85
314 315 1.352156 GATCGTTTCGTTCGCTGGCT 61.352 55.000 0.00 0.00 0.00 4.75
315 316 1.058903 GATCGTTTCGTTCGCTGGC 59.941 57.895 0.00 0.00 0.00 4.85
316 317 1.340465 CGATCGTTTCGTTCGCTGG 59.660 57.895 7.03 0.00 40.94 4.85
317 318 4.905085 CGATCGTTTCGTTCGCTG 57.095 55.556 7.03 0.00 40.94 5.18
325 326 1.921230 GGAGACTCAAGCGATCGTTTC 59.079 52.381 14.67 3.75 0.00 2.78
326 327 1.404315 GGGAGACTCAAGCGATCGTTT 60.404 52.381 17.81 14.75 0.00 3.60
327 328 0.173708 GGGAGACTCAAGCGATCGTT 59.826 55.000 17.81 8.05 0.00 3.85
328 329 0.681564 AGGGAGACTCAAGCGATCGT 60.682 55.000 17.81 0.26 0.00 3.73
329 330 0.030101 GAGGGAGACTCAAGCGATCG 59.970 60.000 11.69 11.69 45.85 3.69
330 331 3.957383 GAGGGAGACTCAAGCGATC 57.043 57.895 4.53 0.00 45.85 3.69
338 339 1.536943 AACGCCAGTGAGGGAGACTC 61.537 60.000 0.00 0.00 46.78 3.36
339 340 1.122019 AAACGCCAGTGAGGGAGACT 61.122 55.000 0.00 0.00 38.09 3.24
340 341 0.250338 AAAACGCCAGTGAGGGAGAC 60.250 55.000 0.00 0.00 38.09 3.36
341 342 0.250295 CAAAACGCCAGTGAGGGAGA 60.250 55.000 0.00 0.00 38.09 3.71
342 343 0.535102 ACAAAACGCCAGTGAGGGAG 60.535 55.000 0.00 0.00 38.09 4.30
343 344 0.534203 GACAAAACGCCAGTGAGGGA 60.534 55.000 0.00 0.00 38.09 4.20
344 345 1.841663 CGACAAAACGCCAGTGAGGG 61.842 60.000 0.00 0.00 38.09 4.30
345 346 1.569493 CGACAAAACGCCAGTGAGG 59.431 57.895 0.00 0.00 41.84 3.86
354 355 4.710528 ACTAGAAAAGAGCGACAAAACG 57.289 40.909 0.00 0.00 0.00 3.60
355 356 6.766452 AGTACTAGAAAAGAGCGACAAAAC 57.234 37.500 0.00 0.00 0.00 2.43
356 357 6.423001 GGAAGTACTAGAAAAGAGCGACAAAA 59.577 38.462 0.00 0.00 0.00 2.44
357 358 5.924825 GGAAGTACTAGAAAAGAGCGACAAA 59.075 40.000 0.00 0.00 0.00 2.83
358 359 5.243283 AGGAAGTACTAGAAAAGAGCGACAA 59.757 40.000 0.00 0.00 0.00 3.18
359 360 4.765856 AGGAAGTACTAGAAAAGAGCGACA 59.234 41.667 0.00 0.00 0.00 4.35
360 361 5.313520 AGGAAGTACTAGAAAAGAGCGAC 57.686 43.478 0.00 0.00 0.00 5.19
361 362 4.398673 GGAGGAAGTACTAGAAAAGAGCGA 59.601 45.833 0.00 0.00 0.00 4.93
362 363 4.158025 TGGAGGAAGTACTAGAAAAGAGCG 59.842 45.833 0.00 0.00 0.00 5.03
363 364 5.662674 TGGAGGAAGTACTAGAAAAGAGC 57.337 43.478 0.00 0.00 0.00 4.09
364 365 6.460399 CGGATGGAGGAAGTACTAGAAAAGAG 60.460 46.154 0.00 0.00 0.00 2.85
365 366 5.360144 CGGATGGAGGAAGTACTAGAAAAGA 59.640 44.000 0.00 0.00 0.00 2.52
366 367 5.127356 ACGGATGGAGGAAGTACTAGAAAAG 59.873 44.000 0.00 0.00 0.00 2.27
367 368 5.021458 ACGGATGGAGGAAGTACTAGAAAA 58.979 41.667 0.00 0.00 0.00 2.29
368 369 4.401519 CACGGATGGAGGAAGTACTAGAAA 59.598 45.833 0.00 0.00 0.00 2.52
369 370 3.952323 CACGGATGGAGGAAGTACTAGAA 59.048 47.826 0.00 0.00 0.00 2.10
370 371 3.201487 TCACGGATGGAGGAAGTACTAGA 59.799 47.826 0.00 0.00 0.00 2.43
371 372 3.552875 TCACGGATGGAGGAAGTACTAG 58.447 50.000 0.00 0.00 0.00 2.57
372 373 3.657398 TCACGGATGGAGGAAGTACTA 57.343 47.619 0.00 0.00 0.00 1.82
373 374 2.526888 TCACGGATGGAGGAAGTACT 57.473 50.000 0.00 0.00 0.00 2.73
374 375 3.132289 TGAATCACGGATGGAGGAAGTAC 59.868 47.826 0.00 0.00 0.00 2.73
375 376 3.371034 TGAATCACGGATGGAGGAAGTA 58.629 45.455 0.00 0.00 0.00 2.24
376 377 2.187958 TGAATCACGGATGGAGGAAGT 58.812 47.619 0.00 0.00 0.00 3.01
377 378 2.939103 GTTGAATCACGGATGGAGGAAG 59.061 50.000 0.00 0.00 0.00 3.46
378 379 2.571653 AGTTGAATCACGGATGGAGGAA 59.428 45.455 0.00 0.00 0.00 3.36
379 380 2.187958 AGTTGAATCACGGATGGAGGA 58.812 47.619 0.00 0.00 0.00 3.71
380 381 2.698855 AGTTGAATCACGGATGGAGG 57.301 50.000 0.00 0.00 0.00 4.30
381 382 6.986817 AGTATAAAGTTGAATCACGGATGGAG 59.013 38.462 0.00 0.00 0.00 3.86
382 383 6.884832 AGTATAAAGTTGAATCACGGATGGA 58.115 36.000 0.00 0.00 0.00 3.41
383 384 7.095607 GCTAGTATAAAGTTGAATCACGGATGG 60.096 40.741 0.00 0.00 0.00 3.51
384 385 7.653713 AGCTAGTATAAAGTTGAATCACGGATG 59.346 37.037 0.00 0.00 0.00 3.51
385 386 7.727181 AGCTAGTATAAAGTTGAATCACGGAT 58.273 34.615 0.00 0.00 0.00 4.18
386 387 7.108841 AGCTAGTATAAAGTTGAATCACGGA 57.891 36.000 0.00 0.00 0.00 4.69
387 388 7.772332 AAGCTAGTATAAAGTTGAATCACGG 57.228 36.000 0.00 0.00 0.00 4.94
388 389 9.297586 TGTAAGCTAGTATAAAGTTGAATCACG 57.702 33.333 0.00 0.00 0.00 4.35
394 395 9.350357 CGACTTTGTAAGCTAGTATAAAGTTGA 57.650 33.333 20.21 0.00 43.00 3.18
395 396 9.350357 TCGACTTTGTAAGCTAGTATAAAGTTG 57.650 33.333 19.45 19.45 42.21 3.16
396 397 9.570488 CTCGACTTTGTAAGCTAGTATAAAGTT 57.430 33.333 16.69 5.95 42.21 2.66
397 398 8.738106 ACTCGACTTTGTAAGCTAGTATAAAGT 58.262 33.333 15.96 15.96 43.77 2.66
398 399 9.224058 GACTCGACTTTGTAAGCTAGTATAAAG 57.776 37.037 11.17 11.17 37.87 1.85
399 400 8.733458 TGACTCGACTTTGTAAGCTAGTATAAA 58.267 33.333 0.00 0.00 0.00 1.40
400 401 8.180267 GTGACTCGACTTTGTAAGCTAGTATAA 58.820 37.037 0.00 0.00 0.00 0.98
401 402 7.551974 AGTGACTCGACTTTGTAAGCTAGTATA 59.448 37.037 0.00 0.00 0.00 1.47
402 403 6.374894 AGTGACTCGACTTTGTAAGCTAGTAT 59.625 38.462 0.00 0.00 0.00 2.12
403 404 5.704515 AGTGACTCGACTTTGTAAGCTAGTA 59.295 40.000 0.00 0.00 0.00 1.82
404 405 4.519730 AGTGACTCGACTTTGTAAGCTAGT 59.480 41.667 0.00 0.00 0.00 2.57
405 406 5.049398 AGTGACTCGACTTTGTAAGCTAG 57.951 43.478 0.00 0.00 0.00 3.42
406 407 5.449107 AAGTGACTCGACTTTGTAAGCTA 57.551 39.130 0.00 0.00 31.92 3.32
407 408 4.323553 AAGTGACTCGACTTTGTAAGCT 57.676 40.909 0.00 0.00 31.92 3.74
408 409 6.707599 AATAAGTGACTCGACTTTGTAAGC 57.292 37.500 0.00 0.00 37.38 3.09
409 410 8.009974 CCAAAATAAGTGACTCGACTTTGTAAG 58.990 37.037 0.00 0.00 37.38 2.34
410 411 7.041644 CCCAAAATAAGTGACTCGACTTTGTAA 60.042 37.037 0.00 0.00 37.38 2.41
411 412 6.425721 CCCAAAATAAGTGACTCGACTTTGTA 59.574 38.462 0.00 0.00 37.38 2.41
412 413 5.238650 CCCAAAATAAGTGACTCGACTTTGT 59.761 40.000 0.00 0.00 37.38 2.83
413 414 5.468746 TCCCAAAATAAGTGACTCGACTTTG 59.531 40.000 0.00 0.00 37.38 2.77
414 415 5.617252 TCCCAAAATAAGTGACTCGACTTT 58.383 37.500 0.00 0.00 37.38 2.66
415 416 5.223449 TCCCAAAATAAGTGACTCGACTT 57.777 39.130 0.00 0.00 39.54 3.01
416 417 4.884668 TCCCAAAATAAGTGACTCGACT 57.115 40.909 0.00 0.00 0.00 4.18
417 418 4.332819 CCATCCCAAAATAAGTGACTCGAC 59.667 45.833 0.00 0.00 0.00 4.20
418 419 4.224147 TCCATCCCAAAATAAGTGACTCGA 59.776 41.667 0.00 0.00 0.00 4.04
419 420 4.513442 TCCATCCCAAAATAAGTGACTCG 58.487 43.478 0.00 0.00 0.00 4.18
420 421 5.745227 TCTCCATCCCAAAATAAGTGACTC 58.255 41.667 0.00 0.00 0.00 3.36
421 422 5.779241 TCTCCATCCCAAAATAAGTGACT 57.221 39.130 0.00 0.00 0.00 3.41
422 423 6.834168 TTTCTCCATCCCAAAATAAGTGAC 57.166 37.500 0.00 0.00 0.00 3.67
423 424 9.713684 ATATTTTCTCCATCCCAAAATAAGTGA 57.286 29.630 0.00 0.00 36.21 3.41
433 434 9.920946 GCCTTATATAATATTTTCTCCATCCCA 57.079 33.333 0.00 0.00 0.00 4.37
434 435 9.057089 CGCCTTATATAATATTTTCTCCATCCC 57.943 37.037 0.00 0.00 0.00 3.85
435 436 9.614792 ACGCCTTATATAATATTTTCTCCATCC 57.385 33.333 0.00 0.00 0.00 3.51
437 438 9.959721 ACACGCCTTATATAATATTTTCTCCAT 57.040 29.630 0.00 0.00 0.00 3.41
451 452 9.151471 GACAACATCAATATACACGCCTTATAT 57.849 33.333 0.00 0.00 0.00 0.86
452 453 8.364894 AGACAACATCAATATACACGCCTTATA 58.635 33.333 0.00 0.00 0.00 0.98
453 454 7.217200 AGACAACATCAATATACACGCCTTAT 58.783 34.615 0.00 0.00 0.00 1.73
454 455 6.578944 AGACAACATCAATATACACGCCTTA 58.421 36.000 0.00 0.00 0.00 2.69
455 456 5.428253 AGACAACATCAATATACACGCCTT 58.572 37.500 0.00 0.00 0.00 4.35
456 457 5.023533 AGACAACATCAATATACACGCCT 57.976 39.130 0.00 0.00 0.00 5.52
457 458 5.293324 TCAAGACAACATCAATATACACGCC 59.707 40.000 0.00 0.00 0.00 5.68
458 459 6.344572 TCAAGACAACATCAATATACACGC 57.655 37.500 0.00 0.00 0.00 5.34
466 467 9.661563 ATGCATTTATTTCAAGACAACATCAAT 57.338 25.926 0.00 0.00 0.00 2.57
468 469 9.791820 CTATGCATTTATTTCAAGACAACATCA 57.208 29.630 3.54 0.00 0.00 3.07
469 470 9.241317 CCTATGCATTTATTTCAAGACAACATC 57.759 33.333 3.54 0.00 0.00 3.06
470 471 7.707893 GCCTATGCATTTATTTCAAGACAACAT 59.292 33.333 3.54 0.00 37.47 2.71
471 472 7.035004 GCCTATGCATTTATTTCAAGACAACA 58.965 34.615 3.54 0.00 37.47 3.33
472 473 6.197096 CGCCTATGCATTTATTTCAAGACAAC 59.803 38.462 3.54 0.00 37.32 3.32
473 474 6.264832 CGCCTATGCATTTATTTCAAGACAA 58.735 36.000 3.54 0.00 37.32 3.18
474 475 5.221028 CCGCCTATGCATTTATTTCAAGACA 60.221 40.000 3.54 0.00 37.32 3.41
475 476 5.008613 TCCGCCTATGCATTTATTTCAAGAC 59.991 40.000 3.54 0.00 37.32 3.01
476 477 5.129634 TCCGCCTATGCATTTATTTCAAGA 58.870 37.500 3.54 0.00 37.32 3.02
477 478 5.437289 TCCGCCTATGCATTTATTTCAAG 57.563 39.130 3.54 0.00 37.32 3.02
478 479 5.843673 TTCCGCCTATGCATTTATTTCAA 57.156 34.783 3.54 0.00 37.32 2.69
479 480 5.843673 TTTCCGCCTATGCATTTATTTCA 57.156 34.783 3.54 0.00 37.32 2.69
604 606 3.330701 TCCTCCAACTGAATGCCTTAGTT 59.669 43.478 0.00 0.00 35.18 2.24
605 607 2.912956 TCCTCCAACTGAATGCCTTAGT 59.087 45.455 0.00 0.00 0.00 2.24
606 608 3.634397 TCCTCCAACTGAATGCCTTAG 57.366 47.619 0.00 0.00 0.00 2.18
617 619 1.202818 GGCAGAACACTTCCTCCAACT 60.203 52.381 0.00 0.00 0.00 3.16
619 621 0.250295 CGGCAGAACACTTCCTCCAA 60.250 55.000 0.00 0.00 0.00 3.53
626 628 3.058224 GCAATAAACTCGGCAGAACACTT 60.058 43.478 0.00 0.00 0.00 3.16
632 634 2.472695 ACAGCAATAAACTCGGCAGA 57.527 45.000 0.00 0.00 0.00 4.26
652 654 0.318762 GAGAGAAGAGCACAACGGGT 59.681 55.000 0.00 0.00 0.00 5.28
657 659 1.620819 GGTGGAGAGAGAAGAGCACAA 59.379 52.381 0.00 0.00 0.00 3.33
705 707 4.880537 CGCGCCAAGCTCGATCCT 62.881 66.667 0.00 0.00 45.59 3.24
717 719 0.305313 CTAGTCTAGTCTGACGCGCC 59.695 60.000 5.73 0.00 41.47 6.53
757 759 5.047660 GGATAAGATAACGAGTGATCTGGCT 60.048 44.000 3.97 0.00 32.66 4.75
758 760 5.164954 GGATAAGATAACGAGTGATCTGGC 58.835 45.833 3.97 0.00 32.66 4.85
759 761 6.332735 TGGATAAGATAACGAGTGATCTGG 57.667 41.667 3.97 0.00 32.66 3.86
760 762 6.309980 GCATGGATAAGATAACGAGTGATCTG 59.690 42.308 3.97 0.00 32.66 2.90
761 763 6.015095 TGCATGGATAAGATAACGAGTGATCT 60.015 38.462 0.00 0.00 33.75 2.75
762 764 6.159293 TGCATGGATAAGATAACGAGTGATC 58.841 40.000 0.00 0.00 0.00 2.92
763 765 6.101650 TGCATGGATAAGATAACGAGTGAT 57.898 37.500 0.00 0.00 0.00 3.06
805 807 8.478877 CAACTAACTAACTCCATGACCTATTCT 58.521 37.037 0.00 0.00 0.00 2.40
827 829 2.839486 TGCTCCTTCGTCAATCAACT 57.161 45.000 0.00 0.00 0.00 3.16
831 833 1.656095 CGACTTGCTCCTTCGTCAATC 59.344 52.381 0.00 0.00 0.00 2.67
832 834 1.000955 ACGACTTGCTCCTTCGTCAAT 59.999 47.619 0.00 0.00 42.11 2.57
833 835 0.387929 ACGACTTGCTCCTTCGTCAA 59.612 50.000 0.00 0.00 42.11 3.18
834 836 1.068748 GTACGACTTGCTCCTTCGTCA 60.069 52.381 0.00 0.00 44.53 4.35
835 837 1.615502 GTACGACTTGCTCCTTCGTC 58.384 55.000 0.00 0.00 44.53 4.20
837 839 0.797249 CCGTACGACTTGCTCCTTCG 60.797 60.000 18.76 0.00 38.73 3.79
867 869 2.303175 GCCCGGTTCTTAATTATGCCA 58.697 47.619 0.00 0.00 0.00 4.92
868 870 1.265905 CGCCCGGTTCTTAATTATGCC 59.734 52.381 0.00 0.00 0.00 4.40
919 930 4.502558 GTTGTTTCACTTTCACGTACTCG 58.497 43.478 0.00 0.00 43.34 4.18
933 944 4.158025 GTCCTATCTCTCTCGGTTGTTTCA 59.842 45.833 0.00 0.00 0.00 2.69
954 965 5.656213 TTAAGTTGTAGTAGGAGCTGGTC 57.344 43.478 0.00 0.00 0.00 4.02
994 1019 3.814268 CCGGAGCGCCATTGTTGG 61.814 66.667 7.44 0.00 46.66 3.77
1021 1046 1.684734 GGAGAAGGAGGGGCACGTA 60.685 63.158 0.00 0.00 0.00 3.57
1033 1058 2.430610 CGGCCAGGAGGAGGAGAAG 61.431 68.421 2.24 0.00 36.89 2.85
1035 1060 3.663815 GACGGCCAGGAGGAGGAGA 62.664 68.421 2.24 0.00 36.89 3.71
1089 1114 4.874977 GTCTCGTAGCAGCCGCCC 62.875 72.222 0.00 0.00 39.83 6.13
1224 1249 2.047465 AGGAGCACGCTGAAGCAG 60.047 61.111 0.00 0.00 42.21 4.24
1297 1322 0.331278 CTCCCTTGTAATGGCACCCA 59.669 55.000 0.00 0.00 38.19 4.51
1436 1466 2.437359 CAAGAAGGAGCAGGCCGG 60.437 66.667 0.00 0.00 0.00 6.13
1437 1467 3.130160 GCAAGAAGGAGCAGGCCG 61.130 66.667 0.00 0.00 0.00 6.13
1438 1468 2.045131 CAGCAAGAAGGAGCAGGCC 61.045 63.158 0.00 0.00 0.00 5.19
1439 1469 2.698763 GCAGCAAGAAGGAGCAGGC 61.699 63.158 0.00 0.00 0.00 4.85
1440 1470 1.002379 AGCAGCAAGAAGGAGCAGG 60.002 57.895 0.00 0.00 0.00 4.85
1441 1471 1.025647 GGAGCAGCAAGAAGGAGCAG 61.026 60.000 0.00 0.00 0.00 4.24
1442 1472 1.002868 GGAGCAGCAAGAAGGAGCA 60.003 57.895 0.00 0.00 0.00 4.26
1443 1473 2.105466 CGGAGCAGCAAGAAGGAGC 61.105 63.158 0.00 0.00 0.00 4.70
1444 1474 1.449246 CCGGAGCAGCAAGAAGGAG 60.449 63.158 0.00 0.00 0.00 3.69
1445 1475 1.892819 CTCCGGAGCAGCAAGAAGGA 61.893 60.000 20.67 0.00 0.00 3.36
1446 1476 1.449246 CTCCGGAGCAGCAAGAAGG 60.449 63.158 20.67 0.00 0.00 3.46
1447 1477 0.036952 TTCTCCGGAGCAGCAAGAAG 60.037 55.000 27.39 0.00 0.00 2.85
1448 1478 0.320771 GTTCTCCGGAGCAGCAAGAA 60.321 55.000 27.39 11.27 0.00 2.52
1449 1479 1.293498 GTTCTCCGGAGCAGCAAGA 59.707 57.895 27.39 4.72 0.00 3.02
1450 1480 2.097038 CGTTCTCCGGAGCAGCAAG 61.097 63.158 27.39 10.29 0.00 4.01
1451 1481 2.048222 CGTTCTCCGGAGCAGCAA 60.048 61.111 27.39 12.98 0.00 3.91
1452 1482 2.867855 AACGTTCTCCGGAGCAGCA 61.868 57.895 27.39 6.53 42.24 4.41
1453 1483 2.048127 AACGTTCTCCGGAGCAGC 60.048 61.111 27.39 16.71 42.24 5.25
1454 1484 1.006102 ACAACGTTCTCCGGAGCAG 60.006 57.895 27.39 20.60 42.24 4.24
1455 1485 1.300620 CACAACGTTCTCCGGAGCA 60.301 57.895 27.39 14.29 42.24 4.26
1456 1486 2.668280 GCACAACGTTCTCCGGAGC 61.668 63.158 27.39 12.82 42.24 4.70
1457 1487 2.372690 CGCACAACGTTCTCCGGAG 61.373 63.158 26.32 26.32 42.24 4.63
1458 1488 2.355363 CGCACAACGTTCTCCGGA 60.355 61.111 2.93 2.93 42.24 5.14
1698 1753 6.597280 AGAGCATTTCAAAGGAGCTTAGTAAG 59.403 38.462 5.47 5.47 35.36 2.34
1719 1774 4.154347 CGCCAGGACCAGGAGAGC 62.154 72.222 7.20 0.00 0.00 4.09
1720 1775 1.333636 ATTCGCCAGGACCAGGAGAG 61.334 60.000 7.20 0.00 36.32 3.20
1721 1776 1.306141 ATTCGCCAGGACCAGGAGA 60.306 57.895 7.20 6.14 32.93 3.71
1725 1780 2.046023 TGCATTCGCCAGGACCAG 60.046 61.111 0.00 0.00 37.32 4.00
1726 1781 2.046023 CTGCATTCGCCAGGACCA 60.046 61.111 0.00 0.00 37.32 4.02
1727 1782 2.825836 CCTGCATTCGCCAGGACC 60.826 66.667 1.23 0.00 38.16 4.46
1728 1783 2.825836 CCCTGCATTCGCCAGGAC 60.826 66.667 8.92 0.00 38.16 3.85
1735 1790 0.958091 TTTTCACACCCCTGCATTCG 59.042 50.000 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.