>input_sequence_83780
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----------------------------------------------------------------ATGGCGCTCCGGCGGC
GGCTCTACGTGCCCCTCCTTCTCCTCCTCCTGGCCGTCGCTTTTCTGGCGTCGCCCGCCGTCGGCCTCCCTCCGGGCGGC
TGCTACGAGACGGCGACGAAGGTGTCCAGGCGGTGCTCGGGGGAGTTCATCAAGGCGCTCTTCTCCGACGACTTGCACGG
GGTCAGCCGTAAATGCTGCGATGAGCTGACCTGCGTCCGCGAGCAGTCCTGCTTCAGCGTGCTCCTGTGGTACTGCCCGC
CCGAGGCGTGGGCGCACTGTTATGGCGGTAAAGCGGCCGCCTGGGTGCCATTACAAGGGAGCCCCTGA------------
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>chr2B_1_TraesCS2B01G362100
GATGGCAGTCTTTGTTTATTAAGAGATGCCATTTTTATTTTAAGAGATAACATTTTATATTTTTTTATAAGAGATGGCAT
TTTTTTTTATTTAAGAGATGACATGTTTTTAGGAGATGGCATTTCTGTTTACTAAGAGATGTCATTTTTTATCATGACAT
TTTTACATAAGGACTTTTTTGTTTGTTTTTGGTCTATGAAAATAATGTTCTCTACACAGCATGGTATTTTTAATTATTTT
CAGATAATTGTGTAGTCGGGCCTGGGGGTTCACGAGCTCTCCAGCAAACAAAAATGTTCGCTGGTGGATCGACCAGCCAG
CGAACGAAACGATCGCTTGAGTCTCCCTCACTGGCGTTTTGTCGCTCTTTTCTAGTACTTCCTCCATCCGTGATTCAACT
TTATACTAGCTTACAAAGTCGAGTCACTTATTTTGGGATGGAGAAAATATTATATAAGGCGTGTATATTGATGTTGTCTT
GAAATAAATGCATAGGCGGAAAAAAGAGAAATCAAGAGAATAAAATTAACTTACTAATTAACAAAAAAAATGTACATCTC
TAAATCAGTAAGAAA-AAAACAAATTACTAATTATGTGAATATAAAACTAAGGCATTCAGTTGGAGGAAGTGTTCTGCCG
AGTTTATTGCTGTACCCGTTGTGCTCTTCTCTCTCCACCTATATATTCTCTGCGCGCGCGGTGCGGAGGATCGAGCTTGG
CGCGTCAGACTAGACTAGAGAGATTATAGGAGGCCAGAAGCCAGATCACTCGTTATCTTATCCATGCATGATCGTGTGCG
CGCAGAAGAATAGGTCATGGAGTTAGTTAGTTGATTGACGAAGGAGCAAGTCGTACGGCCGGTGTGTGTGGCATAATTAA
GAACCGGGCGGGTAGTTCAATTTATCGAAGG---------TGTGTGCCTCGAGTACGTGAAAGTGAAACAACCGAGAGAG
ATAGG---------ACCAGCTC-----CTACTACAACTTAATCGATCTAGTGCTGCGGCCAACAATGGCGCTCCGGCGGC
GGCTCTACGTGCCCCTCCTTCTCCTCCTCCTGGCCGTCGCTTTTCTGGCGTCGCCCGCCGTCGGCCTCCCTCCGGGCGGC
TGCTACGAGACGGCGACGAAGGTGTCCAGGCGGTGCTCGGGGGAGTTCATCAAGGCGCTCTTCTCCGACGACTTGCACGG
GGTCAGCCGTAAATGCTGCGATGAGCTGACCTGCGTCCGCGAGCAGTCCTGCTTCAGCGTGCTCCTGTGGTACTGCCCGC
CCGAGGCGTGGGCGCACTGTTATGGCGGTAAAGCGGCCGCCTGGGTGCCATTACAAGGGAGCCCCTGAGC----GCCGGC
CGCCGTCAATCCCGACGG-GCGATGTCTACGGAGTACGGGCACCAACAATAGGGTGACGTGCACATGAATGAAATAAACC
AATTAGGTGATGTGGCGTGCGTGCACCGGCCTGCTCCTTCTTGCTGCTCCGG-----------------------AGAAC
GTTGTGCGCGCGTGCTTCGTTGCGATTCTGTTTCTGCGTGCGTAATGTTTTTAGATCACGCGTGTGTAA--TTTCCACTT
GATATTTGCTTTTGTAATTGGGCATAGCACTAGCCGGTCATTTTAGAGTCGTGCAATTGCATTTATTTCGTACCACTTTT
TGTCTATGGATTTTTGTTTTTAGAGATGAATTCTAAAATTAAACATGTTTATTACTCCCTCCAATCTATACACTTACTAA
GCTCCTTTGAAATGCTCTCCTGGTCCTGGCGAATGCA-GGGGTGTG-AAAAGTGCATGGGCCCTTGGTGAGAGTGGGTGA
GACGTGTTGGTGGGCAGCTCAGTCCCTTGCGTGTCCAGTTTTCTTGTATACATAGGCAGTTGGCTAGCTAGTCCCTTGCA
GGTTGGTTTGTCTAGCCAAGAAAGAAAAAGACCGTTACCACACCTAGCCAATAAAACACTCTCAACAGGCAAAACTGATT
GAACAGACAAAATGTTAGAAATAAATTAGGATGTGTC--------------CTAAAATGTTAGAAATATATTAGGATGCT
CTTATATTATGAGACAGA-GGGGAATTTATTAATAAATCATCATTTGTGTGTCCAATCCTAAGTAGTGATGTTCC-TTTT
CTTTTAACATG--TAACTGCCATCGCTTGGAGGCAGCTTCCCCCTATGTATATATACCTTTTCTATTAATGGAATTAGAG
AGGTTAGCTCTCTTCCTCCCCCC------TCTCTCGCTCTTACTTGCATTTTTCAGATATATGT----------------
-AATTTTCAGTTTTTTAA---TTTTTTGTTGCTATTCATGAATATTTATTTTCAGAACAAGTGTGAACATTTTTAAAATA
TCTCACTAACTATTTTTAAATTTT
>chr2A_483
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--AATAAATGCAGAGGCGGTGGAAAGATAAGTCAGGAGAATAAAATTAACTTACTAATTAACCAC-----TGTACATCTC
TAAATCAGGAAGAAAGAAAATAAATTACTAATTATGTGAATATAA---TAAGGCATTCGGCTGGAGGTAGTGTGCTGCCG
AGTTTATTGCTGTCCCCGCTGTGCTCTTCTCTCTCCACCTATATATTCCCTGCGCGTGCGGTGCGGGGGATCGAGCTTCG
CGCGTCAGACTAGACTAGAGAGATTATAGGAGGCCAGA-------TCACTCGTTATCTTATCCATGCATGATCGTGTGCG
CGCAGAGGAATAGGTCATGCAGTTAC-TGGTT-------GAAGGAGCAAGTCGTACGGCCGGCGTGAT--GCATAACTAA
GAGCCGGGCGGCTAGTTCAATTTATCGAAGGCATTGCGCTTGTGTGCCTTGAGTACGTGAAAGCGAAACAACCGAGAGAG
ATACAGGTGAGAGAACCAGCTC-----CTACTACAACTTAATCGATCTAGTGCTCCGGTCAACAATGGCGCTCCGGCGGC
GGCTCCACGTGCCCCTCTTCCTCCTCCTCCTGGCCGTCGCTTTTCTTGCGTCGCCCGTCGTCGGCCTCCCTCCCGGCGGC
TGCTACGAGACGGCGACGAAGGTGTCCAGGCGGTGCTCGGGGGAGTTCATCAAGGCGCTCTTCTCCGACGACTTGCACGG
GGTCAGCCGTAAATGCTGCGATGAGCTGACCTGCGTCCGCGAGCAGTCGTGCTTCAGCGTGCTCCTGTGGTACTGCCCGC
CCGAGGCGTGGGCGCACTGTTACGGTGGTAAAGCGGCCGCCGGGGTGCCATTACAGGGGAGCCCCTGAGCGCCGGCCGGC
CGCCGTCAATCCCGACGGCGCGATGTCTACGGAGTACGGGCACCAACAATAGGGTGACGTGCAC----ATAAAATAAACC
AATTAGGTGACGTGGCGTGCGTGCA-----------------------CCGG-----------------------AGAAC
GTTGTGCGCGCGTGCTTCGTTGCGATTCTGTTTCTGCGTGCGTAATGTTTTTAGATCACGCGTGTGTCGTGTTTCCACTT
GATATTTGCTTCTGTAATTGGGCATAGCACTAGCCGGTCATTTTAGAGTCGTGCAATTGCATTTCTTTCGTACCACTTTT
TGTCTATGAATTTTTGTTTTTAGAAATGAATTCTAAGATTAAACATGT--------------------------------
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>chr2D_684
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--------------------------------------------ATTCTCCGCGCGTGCGGTGCGGGGGATCGGGCTTCG
CGCGTCAGACTAGACTAGAGAGATTATAGGAGGCAAGA-------TCACTCGTTATCTTATCCATGCAACATCGTGCGCG
CGCAGAGGAATAGGTCATGGAGTTTGTTGGTT-------GAAGGAGCAAGTCGTACGGTCGGTGTGTGGT--ATAATTAA
GAGCCGGGCGGGTACTTCAATTTATC-AAGGCATTGTGCTTGTGTGCCTTGTGTACGT------GAAACAACCGAGAGAG
ATACAAGTGAGAGAATCAGCTCTCCTCCTACCACAACTTAATCGATCTAGTGCTCCGGTCAACAATGGCGCTCCGGCGGC
GGCTCCACGTGTCCCTCTTCCTCCTCCTCCTGGCCGTCGCTTTTCTTGCGTCGCCGGCCGTCGGCCTCCCTCCCGGCGGC
TGCTACGAGACGGCGACGAAGGTGTCCAGGCGGTGCTCGGGGGAGTTCATCAAGGCGCTCTTCTCCGACGACTTGCACGG
GGTCAGCCGTAAATGCTGCGATGAGCTGACCTGCGTCCGCGAGCAGTCGTGCTTCAGCGTGCTCCTGTGGTACTGCCCGC
CCGAGGCGTGGGCGCACTGTTATGGCGGTAAAGCGGCCGCCGGGGTGCCATTACAAGGGAGCCCCTGAGC----GCCGCC
CGCCGTCAATCCCGACGG-GCGATGTCTACGGAGTACGGGCACCAACAATAGGGTGACGTGCACATGAATGAAATAAACC
AATTAGGTGACGTGGCGTGCGTGCA-----------------------CCGGCCTGCTCCTTCTTGCTGCTCCGGAGAAC
GTTGTGCGCGCGTGCTTCGTTGCGATTCTGTTTCTGCGTGCGTAATGTTTTTAGATCACGCGTGTGTAA--TTTCCACTT
GATATTTGCTTTTGTAATTGGGCATAGCACTAGCCGGTCATTTTAGAGTCGTGCAATTGCATTTATTTCGTACAACTTTT
TGTCTATGGATTTTTGTTTTTAGAGATGAATTCTAAAATTAAACATGTTTATTACTCCCTCCAATCTATA----------
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>chr3B_1690
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---------------------------------------------------------------ATCTATACAGTTACTAA
GGTCCCTTGAAATAAGGTC----TCCTAGTGAATCCA-GC-GTTTG-AAAAGTGCATGGGCCTTGGGTGACAGTGGGTGA
GGCATGTTGGTTGGAATCTCGGTCCCTTGTGTGTCCAGTTTTCTTGTGTACATGCGCAGTTCGCCTGCTGGACCCTTGCA
TGTTGGTTCATCTAGCAAAGAAAGAAAAAGACCGTTACCACACCTAGCTAATAAAAGAATCTCAATGAGCAAAACTGATT
GAACAAAGAAAATGTTAGGAATAAATTAGGATGTGTCTATTATATTGATAACTAAAATG---------------------
-----------------------TATTAATTAACGAATCATCATTCTTGTGACCAATCCAAAGTAGTGATGTCCCTTTTT
CTTTTAACATTTATAACTGCCATCTCTTGGAGGCAGCTTCTCCCTATGTATAGATACCTTTTCTATCAATGGAATTAGAG
AGGGTAGCACTCT-CTCCGTCCCCTCACTATT-------TTACTTGCATTTTTCAGATATATGTTGTTTTACTTTT----
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>chr2D_1693
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------------------------------------------------------------------TATACAGTTACTAA
GCTCCTTTGAAATAAGCTC----TCCTGGTGAATGCA-GGGGTGTG-AAAAGTGCATGGGCCCTTGATGAGAGTGGGTGA
GACGTGTTGGTGGGCAGCTCAGTCCCTTGCTTGTCCAGTTTTCTTGTATACATAGGCAGTTGGCTAGCTGGTCCCTTGCA
GGTCGGTTTGTCTAGCCAAGAAAGAAAAAGACCGTTACCACACCTAGCTAATAAAACACTCTCAACAGGCAAAACTGATT
GAACAGACAAAATGTTAGAAATAAATTAGGATGTGTC--------------CTAAAATGTTAGAAATATATTAGGATGCT
CTTATATTATGAGACAAA-GGGGAATTTATTAATAAATCATCATTTGTGTGTCCAATCCTAAGTAGTGATGTTCC-TTTT
CTTTTAACATG--TAACTGCCATCGCTTGGAGGCAGCTTCCCCCTATGTATATATATCTTTTCTATTAATGGAATTAGAG
AGGTTAGCTCTCC-CCTCCCCCC------TCTCTCGCTCTTACTTGCATTTTTCAGATATATGG----------------
-AATTTTCAGTTTTTAAA---TTTTTTGTTGCTATACATGAATATTTATTATCAGAACAAGTGTGAACATTTTTAAAATA
TCTCACTAACTATTTTTAAATCTT
>chr6B_1693
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------------------------------------------------------------------TATACAGTTACTAA
GCTCCCTGGAAATAAGCTC----TGCTAGTGAATCTAGGGGGTGTGAAAAAGTGCATGGGTCCTTGGTGACAGTGGGTGA
GACGTGTTGGTGGGCAGCTCGGT-CCTTGCGTTTCCAGTTTACTCGTGAACATAAGCAGTTGACCAGCTGGTCCCTTGCA
CGTCGGTTTGTCTAGTGAAGAAAGAAAAAGACCGTTACCACACCCAGCCAATAAAAGACTCTCGACGGGCAAACCTGATT
GAACAGAGAAAATGTGAGGAATAAATTAGGATGTGTCTATTAT-----TAACTAAAATGTTAGGAATAAATTAGGATATT
TTTATATTATGAGACGGAGGGGGTATTAATTAATGAATCATCATTCATGTGTCCAATCCTAAGTAGCGATGTTCCTTTTT
CTTTTAACATG--TAACTGCCATCGCTTGGAGGCAGCTG-CCCCTATGTATATATACCTTTTCTATCAATGGAATTAGAG
AGGTTAGTCCCCC-CCCCCCACCACCACTTCTCTCACTCTTACTTGCATATTTCAGATATATGTTCTTTTACTTTTGTTT
AAATTTTCAGTTTTATTTTTGTTTTTTGTTGCTATTCACAAATATTTCTTTTCAAAACAAGTGTGATCTTTTTTTAAACA
TCTCACTAACTACTTTTAAAT---
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS----------S------SSS-----S--S---S---------------------------S-SSSSSS----------
--------S-----------S------------------------SSS----------S-S------S-----S------
-------------S----S-------------------------------------S---------S-----------S-
--------------------------------------SSSSSSS-----------------------------------
------S---------------------S---SSSSSSS-----------------------------SS----------
--S----------------------------------------------S-------------S----------------
---SS-------------------------------------------------S---S---------------------
-----S-----------S-S--------------------------S--------------------------S------
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-----------------------------------------S--------------------------------------
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----------S--------------SSSSSSSSSSSSSSSSSSSSSSS--------------------------------
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------------------------------------------------------------------------S-------
-------------SSS---SSSS------S--------------------------------------------------
---------------------------------------------------------------------S----------
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-------------S------------------------------------------------------------------
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---------------------S--
>forward_349
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---------CGATCGCTTGAGTCTCCCTC---------------------------------------------------
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>reverse_1477
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------------------------------------CTTCTTGCTGCTCCGGAGAA------------------------
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