Multiple sequence alignment - TraesCS2B01G348100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G348100 chr2B 100.000 2463 0 0 1 2463 494876152 494878614 0.000000e+00 4549.0
1 TraesCS2B01G348100 chr2B 79.368 601 68 23 1192 1780 494860412 494860968 2.990000e-99 372.0
2 TraesCS2B01G348100 chr2B 96.111 180 6 1 533 711 64891595 64891774 2.400000e-75 292.0
3 TraesCS2B01G348100 chr2B 96.089 179 7 0 533 711 405271873 405271695 2.400000e-75 292.0
4 TraesCS2B01G348100 chr2B 94.652 187 7 3 526 711 170394656 170394472 1.110000e-73 287.0
5 TraesCS2B01G348100 chr2D 88.538 1265 79 32 712 1946 422323991 422325219 0.000000e+00 1472.0
6 TraesCS2B01G348100 chr2D 95.015 341 9 5 2128 2463 422325255 422325592 1.680000e-146 529.0
7 TraesCS2B01G348100 chr2D 90.102 394 21 6 1 382 422323278 422323665 1.700000e-136 496.0
8 TraesCS2B01G348100 chr2D 90.964 166 6 3 371 535 422323846 422324003 5.330000e-52 215.0
9 TraesCS2B01G348100 chr2D 100.000 29 0 0 2023 2051 608530509 608530537 1.000000e-03 54.7
10 TraesCS2B01G348100 chr2A 83.990 787 65 34 1192 1946 568578317 568579074 0.000000e+00 699.0
11 TraesCS2B01G348100 chr2A 87.686 471 39 7 1 460 568575734 568576196 4.660000e-147 531.0
12 TraesCS2B01G348100 chr2A 92.059 340 16 6 2128 2463 568579110 568579442 3.710000e-128 468.0
13 TraesCS2B01G348100 chr2A 86.622 299 22 8 813 1111 568577904 568578184 5.110000e-82 315.0
14 TraesCS2B01G348100 chr2A 91.667 72 5 1 2067 2138 194162118 194162188 5.610000e-17 99.0
15 TraesCS2B01G348100 chr2A 100.000 45 0 0 472 516 568577799 568577843 1.570000e-12 84.2
16 TraesCS2B01G348100 chr5B 97.740 177 3 1 535 711 532890468 532890293 1.110000e-78 303.0
17 TraesCS2B01G348100 chr5B 96.667 180 5 1 533 711 45709981 45710160 5.150000e-77 298.0
18 TraesCS2B01G348100 chr5B 95.082 183 8 1 533 714 352140545 352140363 1.110000e-73 287.0
19 TraesCS2B01G348100 chr4B 96.667 180 5 1 533 712 666696785 666696963 5.150000e-77 298.0
20 TraesCS2B01G348100 chr4B 96.133 181 6 1 533 712 666660159 666660339 6.660000e-76 294.0
21 TraesCS2B01G348100 chr3B 92.893 197 9 4 517 711 817585423 817585616 5.190000e-72 281.0
22 TraesCS2B01G348100 chr3B 92.754 69 3 2 2067 2134 255294328 255294261 5.610000e-17 99.0
23 TraesCS2B01G348100 chr3B 93.846 65 3 1 2067 2131 61103179 61103242 2.020000e-16 97.1
24 TraesCS2B01G348100 chr7B 94.118 68 3 1 2067 2134 612224372 612224438 4.330000e-18 102.0
25 TraesCS2B01G348100 chr7B 93.939 66 2 1 2067 2130 575815894 575815959 5.610000e-17 99.0
26 TraesCS2B01G348100 chr1D 94.118 68 2 2 2067 2133 436709415 436709481 4.330000e-18 102.0
27 TraesCS2B01G348100 chr5D 95.312 64 2 1 2067 2130 76234070 76234132 1.560000e-17 100.0
28 TraesCS2B01G348100 chr6B 93.939 66 2 1 2067 2130 241356562 241356497 5.610000e-17 99.0
29 TraesCS2B01G348100 chr1B 93.939 66 2 1 2067 2130 80410399 80410464 5.610000e-17 99.0
30 TraesCS2B01G348100 chr3A 88.312 77 8 1 1991 2066 663444718 663444642 9.380000e-15 91.6
31 TraesCS2B01G348100 chr3A 93.617 47 2 1 170 216 296306130 296306175 4.390000e-08 69.4
32 TraesCS2B01G348100 chr1A 91.071 56 5 0 2016 2071 513933135 513933190 2.630000e-10 76.8
33 TraesCS2B01G348100 chr3D 100.000 30 0 0 209 238 542739778 542739807 3.420000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G348100 chr2B 494876152 494878614 2462 False 4549.00 4549 100.00000 1 2463 1 chr2B.!!$F3 2462
1 TraesCS2B01G348100 chr2B 494860412 494860968 556 False 372.00 372 79.36800 1192 1780 1 chr2B.!!$F2 588
2 TraesCS2B01G348100 chr2D 422323278 422325592 2314 False 678.00 1472 91.15475 1 2463 4 chr2D.!!$F2 2462
3 TraesCS2B01G348100 chr2A 568575734 568579442 3708 False 419.44 699 90.07140 1 2463 5 chr2A.!!$F2 2462

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
526 2327 0.036765 TGGGTTGATACTCACCACGC 60.037 55.0 0.0 0.0 26.97 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2009 3906 0.321671 GTAGCTGCCAGTCCACTCAA 59.678 55.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.684853 AGGGATTTGATGAATTGGGGATA 57.315 39.130 0.00 0.00 0.00 2.59
33 34 6.237127 AGGGATTTGATGAATTGGGGATAT 57.763 37.500 0.00 0.00 0.00 1.63
34 35 6.636985 AGGGATTTGATGAATTGGGGATATT 58.363 36.000 0.00 0.00 0.00 1.28
35 36 7.084285 AGGGATTTGATGAATTGGGGATATTT 58.916 34.615 0.00 0.00 0.00 1.40
36 37 7.573616 AGGGATTTGATGAATTGGGGATATTTT 59.426 33.333 0.00 0.00 0.00 1.82
62 63 9.760077 TTTTTGACTTTTTACACAAAACACCTA 57.240 25.926 0.00 0.00 40.33 3.08
82 83 4.586001 CCTACATGCAAGATTGGCCTAATT 59.414 41.667 3.32 0.00 0.00 1.40
126 127 2.242043 CAAGTGATCAAACCAGGCCTT 58.758 47.619 0.00 0.00 0.00 4.35
137 138 2.824041 AGGCCTTTATGCACCGCG 60.824 61.111 0.00 0.00 0.00 6.46
184 185 9.524106 TTTTCACGTCAAATCGTATATAGTGAT 57.476 29.630 0.00 0.00 42.27 3.06
185 186 9.524106 TTTCACGTCAAATCGTATATAGTGATT 57.476 29.630 4.90 4.90 42.27 2.57
186 187 8.502161 TCACGTCAAATCGTATATAGTGATTG 57.498 34.615 9.71 2.80 42.27 2.67
387 591 0.831307 ATCCTTCAGGGCCGACTTAC 59.169 55.000 0.00 0.00 35.41 2.34
468 2269 6.070251 ACATTGTAAGGACCATCACATACTGA 60.070 38.462 0.00 0.00 0.00 3.41
469 2270 5.598416 TGTAAGGACCATCACATACTGAG 57.402 43.478 0.00 0.00 30.20 3.35
470 2271 5.023452 TGTAAGGACCATCACATACTGAGT 58.977 41.667 0.00 0.00 30.20 3.41
471 2272 5.483937 TGTAAGGACCATCACATACTGAGTT 59.516 40.000 0.00 0.00 30.20 3.01
472 2273 6.666113 TGTAAGGACCATCACATACTGAGTTA 59.334 38.462 0.00 0.00 30.20 2.24
473 2274 5.599999 AGGACCATCACATACTGAGTTAC 57.400 43.478 0.00 0.00 30.20 2.50
474 2275 5.273208 AGGACCATCACATACTGAGTTACT 58.727 41.667 0.00 0.00 30.20 2.24
475 2276 5.127845 AGGACCATCACATACTGAGTTACTG 59.872 44.000 0.00 0.00 30.20 2.74
523 2324 5.338871 GGATACTTTGGGTTGATACTCACCA 60.339 44.000 0.00 0.00 33.50 4.17
524 2325 3.751518 ACTTTGGGTTGATACTCACCAC 58.248 45.455 0.00 0.00 33.50 4.16
525 2326 2.465860 TTGGGTTGATACTCACCACG 57.534 50.000 0.00 0.00 33.50 4.94
526 2327 0.036765 TGGGTTGATACTCACCACGC 60.037 55.000 0.00 0.00 26.97 5.34
527 2328 0.743345 GGGTTGATACTCACCACGCC 60.743 60.000 0.00 0.00 0.00 5.68
528 2329 0.036765 GGTTGATACTCACCACGCCA 60.037 55.000 0.00 0.00 0.00 5.69
529 2330 1.359848 GTTGATACTCACCACGCCAG 58.640 55.000 0.00 0.00 0.00 4.85
530 2331 0.249120 TTGATACTCACCACGCCAGG 59.751 55.000 0.00 0.00 0.00 4.45
531 2332 1.521681 GATACTCACCACGCCAGGC 60.522 63.158 0.00 0.00 0.00 4.85
532 2333 2.925162 GATACTCACCACGCCAGGCC 62.925 65.000 5.63 0.00 0.00 5.19
534 2335 4.641645 CTCACCACGCCAGGCCAA 62.642 66.667 5.01 0.00 0.00 4.52
535 2336 4.196778 TCACCACGCCAGGCCAAA 62.197 61.111 5.01 0.00 0.00 3.28
536 2337 3.222855 CACCACGCCAGGCCAAAA 61.223 61.111 5.01 0.00 0.00 2.44
537 2338 2.443016 ACCACGCCAGGCCAAAAA 60.443 55.556 5.01 0.00 0.00 1.94
538 2339 1.836604 ACCACGCCAGGCCAAAAAT 60.837 52.632 5.01 0.00 0.00 1.82
539 2340 1.374505 CCACGCCAGGCCAAAAATG 60.375 57.895 5.01 0.00 0.00 2.32
540 2341 2.028733 CACGCCAGGCCAAAAATGC 61.029 57.895 5.01 0.00 0.00 3.56
541 2342 2.209315 ACGCCAGGCCAAAAATGCT 61.209 52.632 5.01 0.00 0.00 3.79
542 2343 0.897863 ACGCCAGGCCAAAAATGCTA 60.898 50.000 5.01 0.00 0.00 3.49
543 2344 0.179129 CGCCAGGCCAAAAATGCTAG 60.179 55.000 5.01 0.00 0.00 3.42
544 2345 1.185315 GCCAGGCCAAAAATGCTAGA 58.815 50.000 5.01 0.00 0.00 2.43
545 2346 1.134995 GCCAGGCCAAAAATGCTAGAC 60.135 52.381 5.01 0.00 0.00 2.59
546 2347 2.170166 CCAGGCCAAAAATGCTAGACA 58.830 47.619 5.01 0.00 0.00 3.41
547 2348 2.762327 CCAGGCCAAAAATGCTAGACAT 59.238 45.455 5.01 0.00 42.30 3.06
548 2349 3.953612 CCAGGCCAAAAATGCTAGACATA 59.046 43.478 5.01 0.00 38.34 2.29
549 2350 4.202050 CCAGGCCAAAAATGCTAGACATAC 60.202 45.833 5.01 0.00 38.34 2.39
550 2351 4.398988 CAGGCCAAAAATGCTAGACATACA 59.601 41.667 5.01 0.00 38.34 2.29
551 2352 5.016173 AGGCCAAAAATGCTAGACATACAA 58.984 37.500 5.01 0.00 38.34 2.41
552 2353 5.480073 AGGCCAAAAATGCTAGACATACAAA 59.520 36.000 5.01 0.00 38.34 2.83
553 2354 5.807011 GGCCAAAAATGCTAGACATACAAAG 59.193 40.000 0.00 0.00 38.34 2.77
554 2355 6.350110 GGCCAAAAATGCTAGACATACAAAGA 60.350 38.462 0.00 0.00 38.34 2.52
555 2356 6.528072 GCCAAAAATGCTAGACATACAAAGAC 59.472 38.462 0.00 0.00 38.34 3.01
556 2357 7.575720 GCCAAAAATGCTAGACATACAAAGACT 60.576 37.037 0.00 0.00 38.34 3.24
557 2358 8.299570 CCAAAAATGCTAGACATACAAAGACTT 58.700 33.333 0.00 0.00 38.34 3.01
560 2361 9.502091 AAAATGCTAGACATACAAAGACTTACA 57.498 29.630 0.00 0.00 38.34 2.41
561 2362 8.480643 AATGCTAGACATACAAAGACTTACAC 57.519 34.615 0.00 0.00 38.34 2.90
562 2363 6.090783 TGCTAGACATACAAAGACTTACACG 58.909 40.000 0.00 0.00 0.00 4.49
563 2364 5.004535 GCTAGACATACAAAGACTTACACGC 59.995 44.000 0.00 0.00 0.00 5.34
564 2365 5.135508 AGACATACAAAGACTTACACGCT 57.864 39.130 0.00 0.00 0.00 5.07
565 2366 5.539048 AGACATACAAAGACTTACACGCTT 58.461 37.500 0.00 0.00 0.00 4.68
566 2367 5.989777 AGACATACAAAGACTTACACGCTTT 59.010 36.000 0.00 0.00 32.46 3.51
567 2368 6.482308 AGACATACAAAGACTTACACGCTTTT 59.518 34.615 0.00 0.00 30.00 2.27
568 2369 7.654520 AGACATACAAAGACTTACACGCTTTTA 59.345 33.333 0.00 0.00 30.00 1.52
569 2370 7.570161 ACATACAAAGACTTACACGCTTTTAC 58.430 34.615 0.00 0.00 30.00 2.01
570 2371 7.225145 ACATACAAAGACTTACACGCTTTTACA 59.775 33.333 0.00 0.00 30.00 2.41
571 2372 5.803118 ACAAAGACTTACACGCTTTTACAC 58.197 37.500 0.00 0.00 30.00 2.90
572 2373 4.703899 AAGACTTACACGCTTTTACACG 57.296 40.909 0.00 0.00 0.00 4.49
573 2374 2.473984 AGACTTACACGCTTTTACACGC 59.526 45.455 0.00 0.00 0.00 5.34
574 2375 2.473984 GACTTACACGCTTTTACACGCT 59.526 45.455 0.00 0.00 0.00 5.07
575 2376 2.473984 ACTTACACGCTTTTACACGCTC 59.526 45.455 0.00 0.00 0.00 5.03
576 2377 1.421382 TACACGCTTTTACACGCTCC 58.579 50.000 0.00 0.00 0.00 4.70
577 2378 0.249741 ACACGCTTTTACACGCTCCT 60.250 50.000 0.00 0.00 0.00 3.69
578 2379 0.865769 CACGCTTTTACACGCTCCTT 59.134 50.000 0.00 0.00 0.00 3.36
579 2380 1.136336 CACGCTTTTACACGCTCCTTC 60.136 52.381 0.00 0.00 0.00 3.46
580 2381 0.442699 CGCTTTTACACGCTCCTTCC 59.557 55.000 0.00 0.00 0.00 3.46
581 2382 1.519408 GCTTTTACACGCTCCTTCCA 58.481 50.000 0.00 0.00 0.00 3.53
582 2383 2.084546 GCTTTTACACGCTCCTTCCAT 58.915 47.619 0.00 0.00 0.00 3.41
583 2384 2.096013 GCTTTTACACGCTCCTTCCATC 59.904 50.000 0.00 0.00 0.00 3.51
584 2385 3.600388 CTTTTACACGCTCCTTCCATCT 58.400 45.455 0.00 0.00 0.00 2.90
585 2386 4.755411 CTTTTACACGCTCCTTCCATCTA 58.245 43.478 0.00 0.00 0.00 1.98
586 2387 4.811969 TTTACACGCTCCTTCCATCTAA 57.188 40.909 0.00 0.00 0.00 2.10
587 2388 2.674796 ACACGCTCCTTCCATCTAAC 57.325 50.000 0.00 0.00 0.00 2.34
588 2389 1.899814 ACACGCTCCTTCCATCTAACA 59.100 47.619 0.00 0.00 0.00 2.41
589 2390 2.301870 ACACGCTCCTTCCATCTAACAA 59.698 45.455 0.00 0.00 0.00 2.83
590 2391 2.673368 CACGCTCCTTCCATCTAACAAC 59.327 50.000 0.00 0.00 0.00 3.32
591 2392 2.280628 CGCTCCTTCCATCTAACAACC 58.719 52.381 0.00 0.00 0.00 3.77
592 2393 2.354704 CGCTCCTTCCATCTAACAACCA 60.355 50.000 0.00 0.00 0.00 3.67
593 2394 3.686016 GCTCCTTCCATCTAACAACCAA 58.314 45.455 0.00 0.00 0.00 3.67
594 2395 4.273318 GCTCCTTCCATCTAACAACCAAT 58.727 43.478 0.00 0.00 0.00 3.16
595 2396 4.336713 GCTCCTTCCATCTAACAACCAATC 59.663 45.833 0.00 0.00 0.00 2.67
596 2397 5.500234 CTCCTTCCATCTAACAACCAATCA 58.500 41.667 0.00 0.00 0.00 2.57
597 2398 5.253330 TCCTTCCATCTAACAACCAATCAC 58.747 41.667 0.00 0.00 0.00 3.06
598 2399 5.009631 CCTTCCATCTAACAACCAATCACA 58.990 41.667 0.00 0.00 0.00 3.58
599 2400 5.476599 CCTTCCATCTAACAACCAATCACAA 59.523 40.000 0.00 0.00 0.00 3.33
600 2401 6.015519 CCTTCCATCTAACAACCAATCACAAA 60.016 38.462 0.00 0.00 0.00 2.83
601 2402 6.325919 TCCATCTAACAACCAATCACAAAC 57.674 37.500 0.00 0.00 0.00 2.93
602 2403 5.242838 TCCATCTAACAACCAATCACAAACC 59.757 40.000 0.00 0.00 0.00 3.27
603 2404 5.243730 CCATCTAACAACCAATCACAAACCT 59.756 40.000 0.00 0.00 0.00 3.50
604 2405 6.381801 CATCTAACAACCAATCACAAACCTC 58.618 40.000 0.00 0.00 0.00 3.85
605 2406 5.690865 TCTAACAACCAATCACAAACCTCT 58.309 37.500 0.00 0.00 0.00 3.69
606 2407 4.918810 AACAACCAATCACAAACCTCTC 57.081 40.909 0.00 0.00 0.00 3.20
607 2408 3.222603 ACAACCAATCACAAACCTCTCC 58.777 45.455 0.00 0.00 0.00 3.71
608 2409 2.558359 CAACCAATCACAAACCTCTCCC 59.442 50.000 0.00 0.00 0.00 4.30
609 2410 1.075536 ACCAATCACAAACCTCTCCCC 59.924 52.381 0.00 0.00 0.00 4.81
610 2411 1.616994 CCAATCACAAACCTCTCCCCC 60.617 57.143 0.00 0.00 0.00 5.40
631 2432 2.236146 CCCTGATTTTTAAAGGGTGGGC 59.764 50.000 1.46 0.00 44.95 5.36
632 2433 2.236146 CCTGATTTTTAAAGGGTGGGCC 59.764 50.000 0.00 0.00 0.00 5.80
633 2434 1.896465 TGATTTTTAAAGGGTGGGCCG 59.104 47.619 0.00 0.00 34.97 6.13
634 2435 0.611200 ATTTTTAAAGGGTGGGCCGC 59.389 50.000 9.05 9.05 34.97 6.53
635 2436 1.473497 TTTTTAAAGGGTGGGCCGCC 61.473 55.000 28.36 28.36 34.97 6.13
648 2449 3.861797 CCGCCCCGCTCACCTATT 61.862 66.667 0.00 0.00 0.00 1.73
649 2450 2.588877 CGCCCCGCTCACCTATTG 60.589 66.667 0.00 0.00 0.00 1.90
650 2451 2.908015 GCCCCGCTCACCTATTGA 59.092 61.111 0.00 0.00 0.00 2.57
651 2452 1.523938 GCCCCGCTCACCTATTGAC 60.524 63.158 0.00 0.00 0.00 3.18
652 2453 1.146263 CCCCGCTCACCTATTGACC 59.854 63.158 0.00 0.00 0.00 4.02
653 2454 1.622607 CCCCGCTCACCTATTGACCA 61.623 60.000 0.00 0.00 0.00 4.02
654 2455 0.251916 CCCGCTCACCTATTGACCAA 59.748 55.000 0.00 0.00 0.00 3.67
655 2456 1.134098 CCCGCTCACCTATTGACCAAT 60.134 52.381 0.64 0.64 34.93 3.16
656 2457 2.213499 CCGCTCACCTATTGACCAATC 58.787 52.381 0.00 0.00 32.50 2.67
657 2458 2.419990 CCGCTCACCTATTGACCAATCA 60.420 50.000 0.00 0.00 32.50 2.57
670 2471 6.773976 TTGACCAATCAAGATTAACCATCC 57.226 37.500 0.00 0.00 40.01 3.51
671 2472 6.078456 TGACCAATCAAGATTAACCATCCT 57.922 37.500 0.00 0.00 31.20 3.24
672 2473 5.887598 TGACCAATCAAGATTAACCATCCTG 59.112 40.000 0.00 0.00 31.20 3.86
673 2474 5.831103 ACCAATCAAGATTAACCATCCTGT 58.169 37.500 0.00 0.00 31.20 4.00
674 2475 6.969043 ACCAATCAAGATTAACCATCCTGTA 58.031 36.000 0.00 0.00 31.20 2.74
675 2476 7.410174 ACCAATCAAGATTAACCATCCTGTAA 58.590 34.615 0.00 0.00 31.20 2.41
676 2477 7.893302 ACCAATCAAGATTAACCATCCTGTAAA 59.107 33.333 0.00 0.00 31.20 2.01
677 2478 8.748412 CCAATCAAGATTAACCATCCTGTAAAA 58.252 33.333 0.00 0.00 31.20 1.52
678 2479 9.793252 CAATCAAGATTAACCATCCTGTAAAAG 57.207 33.333 0.00 0.00 31.20 2.27
679 2480 7.391148 TCAAGATTAACCATCCTGTAAAAGC 57.609 36.000 0.00 0.00 31.20 3.51
680 2481 7.175104 TCAAGATTAACCATCCTGTAAAAGCT 58.825 34.615 0.00 0.00 31.20 3.74
681 2482 7.669722 TCAAGATTAACCATCCTGTAAAAGCTT 59.330 33.333 0.00 0.00 31.20 3.74
682 2483 7.396540 AGATTAACCATCCTGTAAAAGCTTG 57.603 36.000 0.00 0.00 31.20 4.01
683 2484 6.948309 AGATTAACCATCCTGTAAAAGCTTGT 59.052 34.615 0.00 0.00 31.20 3.16
684 2485 8.107095 AGATTAACCATCCTGTAAAAGCTTGTA 58.893 33.333 0.00 0.00 31.20 2.41
685 2486 8.644374 ATTAACCATCCTGTAAAAGCTTGTAA 57.356 30.769 0.00 0.00 0.00 2.41
686 2487 6.969993 AACCATCCTGTAAAAGCTTGTAAA 57.030 33.333 0.00 0.00 0.00 2.01
687 2488 7.539034 AACCATCCTGTAAAAGCTTGTAAAT 57.461 32.000 0.00 0.00 0.00 1.40
688 2489 7.158099 ACCATCCTGTAAAAGCTTGTAAATC 57.842 36.000 0.00 0.00 0.00 2.17
689 2490 6.128007 ACCATCCTGTAAAAGCTTGTAAATCG 60.128 38.462 0.00 0.00 0.00 3.34
690 2491 6.128007 CCATCCTGTAAAAGCTTGTAAATCGT 60.128 38.462 0.00 0.00 0.00 3.73
691 2492 6.870971 TCCTGTAAAAGCTTGTAAATCGTT 57.129 33.333 0.00 0.00 0.00 3.85
692 2493 7.266922 TCCTGTAAAAGCTTGTAAATCGTTT 57.733 32.000 0.00 0.00 29.64 3.60
693 2494 7.136119 TCCTGTAAAAGCTTGTAAATCGTTTG 58.864 34.615 0.00 0.00 27.69 2.93
694 2495 6.915843 CCTGTAAAAGCTTGTAAATCGTTTGT 59.084 34.615 0.00 0.00 27.69 2.83
695 2496 8.071368 CCTGTAAAAGCTTGTAAATCGTTTGTA 58.929 33.333 0.00 0.00 27.69 2.41
696 2497 8.770850 TGTAAAAGCTTGTAAATCGTTTGTAC 57.229 30.769 0.00 0.00 27.69 2.90
708 2509 2.492001 CGTTTGTACGTGTAGCATTGC 58.508 47.619 0.00 0.00 42.72 3.56
709 2510 2.723618 CGTTTGTACGTGTAGCATTGCC 60.724 50.000 4.70 0.00 42.72 4.52
710 2511 1.072391 TTGTACGTGTAGCATTGCCG 58.928 50.000 4.70 4.23 0.00 5.69
753 2554 2.744202 AGAGCATTAAACAAGTCCTGCG 59.256 45.455 0.00 0.00 34.89 5.18
865 2666 3.309265 CCCTAGACCCCATACTAGCTAGG 60.309 56.522 24.35 9.19 42.81 3.02
896 2697 1.269723 GCCTAAAAACACTGGCCACTC 59.730 52.381 0.00 0.00 39.49 3.51
897 2698 2.582052 CCTAAAAACACTGGCCACTCA 58.418 47.619 0.00 0.00 0.00 3.41
898 2699 2.293399 CCTAAAAACACTGGCCACTCAC 59.707 50.000 0.00 0.00 0.00 3.51
899 2700 2.143876 AAAAACACTGGCCACTCACT 57.856 45.000 0.00 0.00 0.00 3.41
903 2704 0.322975 ACACTGGCCACTCACTGATC 59.677 55.000 0.00 0.00 0.00 2.92
907 2708 0.252421 TGGCCACTCACTGATCTCCT 60.252 55.000 0.00 0.00 0.00 3.69
968 2769 4.641396 TCCAACTCCTATTGACACACAAG 58.359 43.478 0.00 0.00 42.02 3.16
1030 2831 1.830587 AAGGATCAGCGGTGCAGTCA 61.831 55.000 10.38 0.00 0.00 3.41
1067 2868 0.107410 TTCGCCCCGTTATTGCTCAT 60.107 50.000 0.00 0.00 0.00 2.90
1133 2947 6.373774 CCTCTCCAATCTCCATATATGTTTGC 59.626 42.308 11.73 0.00 0.00 3.68
1134 2948 7.083062 TCTCCAATCTCCATATATGTTTGCT 57.917 36.000 11.73 0.00 0.00 3.91
1193 3053 2.729156 GCTTGCTAAATCGTTGCACTCC 60.729 50.000 0.00 0.00 36.37 3.85
1252 3112 4.864334 GGAGGAGGCCGGCATGTG 62.864 72.222 30.85 0.00 0.00 3.21
1253 3113 4.864334 GAGGAGGCCGGCATGTGG 62.864 72.222 30.85 0.00 0.00 4.17
1298 3158 2.572284 CTGTCCCCGTCTCGAACC 59.428 66.667 0.00 0.00 0.00 3.62
1299 3159 2.203523 TGTCCCCGTCTCGAACCA 60.204 61.111 0.00 0.00 0.00 3.67
1461 3321 4.498520 ACGCGACGATGAGCCCTG 62.499 66.667 15.93 0.00 0.00 4.45
1466 3326 1.380403 CGACGATGAGCCCTGAGTCT 61.380 60.000 0.00 0.00 0.00 3.24
1519 3388 8.411683 GGTACATAGTTACAAGAAGCTTAGCTA 58.588 37.037 7.32 0.00 38.25 3.32
1520 3389 9.453325 GTACATAGTTACAAGAAGCTTAGCTAG 57.547 37.037 7.32 0.66 38.25 3.42
1547 3422 6.631962 AGATCAGTGTTTTACTACTGCTACC 58.368 40.000 0.00 0.00 43.02 3.18
1548 3423 4.801891 TCAGTGTTTTACTACTGCTACCG 58.198 43.478 0.00 0.00 43.02 4.02
1569 3455 2.615912 GCTACTAGATTTGCAGGCTTGG 59.384 50.000 0.00 0.00 0.00 3.61
1592 3478 7.253421 TGGAGGATACCCAAATATAGCTTAGA 58.747 38.462 0.00 0.00 34.49 2.10
1594 3480 8.207545 GGAGGATACCCAAATATAGCTTAGATG 58.792 40.741 0.00 0.00 33.88 2.90
1603 3489 8.462016 CCAAATATAGCTTAGATGCCCAAATAC 58.538 37.037 0.00 0.00 0.00 1.89
1612 3498 7.362401 GCTTAGATGCCCAAATACTATGGAATG 60.362 40.741 0.00 0.00 40.56 2.67
1623 3509 4.030314 ACTATGGAATGATGATGCCCTG 57.970 45.455 0.00 0.00 0.00 4.45
1628 3514 2.381911 GAATGATGATGCCCTGGTTGT 58.618 47.619 0.00 0.00 0.00 3.32
1642 3528 1.989586 TGGTTGTGGTTGGCTAGGTAT 59.010 47.619 0.00 0.00 0.00 2.73
1643 3529 3.182976 TGGTTGTGGTTGGCTAGGTATA 58.817 45.455 0.00 0.00 0.00 1.47
1645 3531 4.141574 TGGTTGTGGTTGGCTAGGTATATC 60.142 45.833 0.00 0.00 0.00 1.63
1650 3536 7.004555 TGTGGTTGGCTAGGTATATCATTAG 57.995 40.000 0.00 0.00 0.00 1.73
1652 3538 7.071950 TGTGGTTGGCTAGGTATATCATTAGTT 59.928 37.037 0.00 0.00 0.00 2.24
1654 3540 6.879458 GGTTGGCTAGGTATATCATTAGTTGG 59.121 42.308 0.00 0.00 0.00 3.77
1656 3542 7.241042 TGGCTAGGTATATCATTAGTTGGTC 57.759 40.000 0.00 0.00 0.00 4.02
1657 3543 6.785466 TGGCTAGGTATATCATTAGTTGGTCA 59.215 38.462 0.00 0.00 0.00 4.02
1658 3544 7.039011 TGGCTAGGTATATCATTAGTTGGTCAG 60.039 40.741 0.00 0.00 0.00 3.51
1660 3546 7.310113 GCTAGGTATATCATTAGTTGGTCAGCT 60.310 40.741 0.00 0.00 0.00 4.24
1671 3557 3.118223 AGTTGGTCAGCTAGCCTTAATCC 60.118 47.826 12.13 6.57 0.00 3.01
1701 3587 7.620555 CCAAGATGGACATCAGGTTTAGCCT 62.621 48.000 14.16 0.00 44.92 4.58
1780 3668 3.590466 GATGTGCAGGCTTGGGGGT 62.590 63.158 0.00 0.00 0.00 4.95
1781 3669 2.210144 GATGTGCAGGCTTGGGGGTA 62.210 60.000 0.00 0.00 0.00 3.69
1782 3670 2.361230 GTGCAGGCTTGGGGGTAC 60.361 66.667 0.00 0.00 0.00 3.34
1824 3720 2.483014 TCCACCGGTAATCAGTTTGG 57.517 50.000 6.87 0.05 0.00 3.28
1825 3721 0.808755 CCACCGGTAATCAGTTTGGC 59.191 55.000 6.87 0.00 0.00 4.52
1827 3723 0.675522 ACCGGTAATCAGTTTGGCGG 60.676 55.000 4.49 0.00 0.00 6.13
1835 3731 3.845781 ATCAGTTTGGCGGATATCAGT 57.154 42.857 4.83 0.00 30.30 3.41
1837 3733 1.331756 CAGTTTGGCGGATATCAGTGC 59.668 52.381 4.83 5.24 0.00 4.40
1844 3740 1.667724 GCGGATATCAGTGCCATATGC 59.332 52.381 4.83 0.00 41.77 3.14
1857 3754 3.373748 TGCCATATGCGTGTCAAACTTAG 59.626 43.478 0.00 0.00 45.60 2.18
1858 3755 3.374058 GCCATATGCGTGTCAAACTTAGT 59.626 43.478 0.00 0.00 0.00 2.24
1859 3756 4.569162 GCCATATGCGTGTCAAACTTAGTA 59.431 41.667 0.00 0.00 0.00 1.82
1860 3757 5.064198 GCCATATGCGTGTCAAACTTAGTAA 59.936 40.000 0.00 0.00 0.00 2.24
1861 3758 6.238374 GCCATATGCGTGTCAAACTTAGTAAT 60.238 38.462 0.00 0.00 0.00 1.89
1862 3759 7.042321 GCCATATGCGTGTCAAACTTAGTAATA 60.042 37.037 0.00 0.00 0.00 0.98
1863 3760 8.273557 CCATATGCGTGTCAAACTTAGTAATAC 58.726 37.037 0.00 0.00 0.00 1.89
1872 3769 8.065407 TGTCAAACTTAGTAATACTTTGTTGCG 58.935 33.333 0.00 1.22 0.00 4.85
1874 3771 8.277713 TCAAACTTAGTAATACTTTGTTGCGTC 58.722 33.333 0.00 0.00 0.00 5.19
1882 3779 6.795098 AATACTTTGTTGCGTCTTCACATA 57.205 33.333 0.00 0.00 0.00 2.29
1888 3785 0.319083 TGCGTCTTCACATACGGGTT 59.681 50.000 0.00 0.00 39.46 4.11
1895 3792 2.613026 TCACATACGGGTTATGGCAG 57.387 50.000 0.00 0.00 41.93 4.85
1903 3800 1.751437 GGGTTATGGCAGACTGAACC 58.249 55.000 6.65 10.68 39.09 3.62
1916 3813 1.971357 ACTGAACCTCGTTCTGGTGAT 59.029 47.619 13.68 0.00 42.83 3.06
1928 3825 6.170506 TCGTTCTGGTGATTGTAATAGCTTT 58.829 36.000 0.00 0.00 0.00 3.51
1930 3827 6.555315 GTTCTGGTGATTGTAATAGCTTTGG 58.445 40.000 0.00 0.00 0.00 3.28
1946 3843 3.636381 CTTTGGCTCTTGCTCTGTTTTC 58.364 45.455 0.00 0.00 39.59 2.29
1947 3844 2.645838 TGGCTCTTGCTCTGTTTTCT 57.354 45.000 0.00 0.00 39.59 2.52
1948 3845 2.498167 TGGCTCTTGCTCTGTTTTCTC 58.502 47.619 0.00 0.00 39.59 2.87
1950 3847 2.551938 GGCTCTTGCTCTGTTTTCTCCT 60.552 50.000 0.00 0.00 39.59 3.69
1952 3849 3.188254 GCTCTTGCTCTGTTTTCTCCTTC 59.812 47.826 0.00 0.00 36.03 3.46
1953 3850 4.640364 CTCTTGCTCTGTTTTCTCCTTCT 58.360 43.478 0.00 0.00 0.00 2.85
1954 3851 5.788450 CTCTTGCTCTGTTTTCTCCTTCTA 58.212 41.667 0.00 0.00 0.00 2.10
1955 3852 6.174720 TCTTGCTCTGTTTTCTCCTTCTAA 57.825 37.500 0.00 0.00 0.00 2.10
1956 3853 5.992217 TCTTGCTCTGTTTTCTCCTTCTAAC 59.008 40.000 0.00 0.00 0.00 2.34
1957 3854 5.290493 TGCTCTGTTTTCTCCTTCTAACA 57.710 39.130 0.00 0.00 0.00 2.41
1958 3855 5.057149 TGCTCTGTTTTCTCCTTCTAACAC 58.943 41.667 0.00 0.00 0.00 3.32
1959 3856 5.057149 GCTCTGTTTTCTCCTTCTAACACA 58.943 41.667 0.00 0.00 0.00 3.72
1960 3857 5.527582 GCTCTGTTTTCTCCTTCTAACACAA 59.472 40.000 0.00 0.00 0.00 3.33
1961 3858 6.205658 GCTCTGTTTTCTCCTTCTAACACAAT 59.794 38.462 0.00 0.00 0.00 2.71
1962 3859 7.496529 TCTGTTTTCTCCTTCTAACACAATG 57.503 36.000 0.00 0.00 0.00 2.82
1963 3860 6.486657 TCTGTTTTCTCCTTCTAACACAATGG 59.513 38.462 0.00 0.00 0.00 3.16
1964 3861 5.534654 TGTTTTCTCCTTCTAACACAATGGG 59.465 40.000 0.00 0.00 0.00 4.00
1975 3872 2.886610 CAATGGGCATTGCTCGCA 59.113 55.556 8.82 0.00 41.27 5.10
1978 3875 1.038681 AATGGGCATTGCTCGCATCA 61.039 50.000 8.82 0.00 36.30 3.07
1985 3882 2.274437 CATTGCTCGCATCACACTACT 58.726 47.619 0.00 0.00 0.00 2.57
1986 3883 3.447742 CATTGCTCGCATCACACTACTA 58.552 45.455 0.00 0.00 0.00 1.82
1987 3884 2.561733 TGCTCGCATCACACTACTAC 57.438 50.000 0.00 0.00 0.00 2.73
1988 3885 1.816224 TGCTCGCATCACACTACTACA 59.184 47.619 0.00 0.00 0.00 2.74
1989 3886 2.427095 TGCTCGCATCACACTACTACAT 59.573 45.455 0.00 0.00 0.00 2.29
1990 3887 2.791560 GCTCGCATCACACTACTACATG 59.208 50.000 0.00 0.00 0.00 3.21
1991 3888 3.735208 GCTCGCATCACACTACTACATGT 60.735 47.826 2.69 2.69 0.00 3.21
1992 3889 4.028852 TCGCATCACACTACTACATGTC 57.971 45.455 0.00 0.00 0.00 3.06
1994 3891 4.082463 TCGCATCACACTACTACATGTCAA 60.082 41.667 0.00 0.00 0.00 3.18
1995 3892 4.625311 CGCATCACACTACTACATGTCAAA 59.375 41.667 0.00 0.00 0.00 2.69
1996 3893 5.220284 CGCATCACACTACTACATGTCAAAG 60.220 44.000 0.00 0.00 0.00 2.77
1997 3894 5.446473 GCATCACACTACTACATGTCAAAGC 60.446 44.000 0.00 0.00 0.00 3.51
1998 3895 4.566004 TCACACTACTACATGTCAAAGCC 58.434 43.478 0.00 0.00 0.00 4.35
1999 3896 3.367932 CACACTACTACATGTCAAAGCCG 59.632 47.826 0.00 0.00 0.00 5.52
2000 3897 2.930040 CACTACTACATGTCAAAGCCGG 59.070 50.000 0.00 0.00 0.00 6.13
2001 3898 2.093658 ACTACTACATGTCAAAGCCGGG 60.094 50.000 0.00 0.00 0.00 5.73
2002 3899 0.035439 ACTACATGTCAAAGCCGGGG 60.035 55.000 0.00 0.00 0.00 5.73
2003 3900 1.376609 CTACATGTCAAAGCCGGGGC 61.377 60.000 0.00 0.18 42.33 5.80
2013 3910 3.905249 GCCGGGGCTTAACTTGAG 58.095 61.111 2.18 0.00 38.26 3.02
2014 3911 1.002502 GCCGGGGCTTAACTTGAGT 60.003 57.895 2.18 0.00 38.26 3.41
2015 3912 1.305930 GCCGGGGCTTAACTTGAGTG 61.306 60.000 2.18 0.00 38.26 3.51
2016 3913 0.676782 CCGGGGCTTAACTTGAGTGG 60.677 60.000 0.00 0.00 0.00 4.00
2017 3914 0.323629 CGGGGCTTAACTTGAGTGGA 59.676 55.000 0.00 0.00 0.00 4.02
2018 3915 1.822506 GGGGCTTAACTTGAGTGGAC 58.177 55.000 0.00 0.00 0.00 4.02
2019 3916 1.351350 GGGGCTTAACTTGAGTGGACT 59.649 52.381 0.00 0.00 0.00 3.85
2020 3917 2.427506 GGGCTTAACTTGAGTGGACTG 58.572 52.381 0.00 0.00 0.00 3.51
2021 3918 2.427506 GGCTTAACTTGAGTGGACTGG 58.572 52.381 0.00 0.00 0.00 4.00
2022 3919 1.807142 GCTTAACTTGAGTGGACTGGC 59.193 52.381 0.00 0.00 0.00 4.85
2023 3920 2.810400 GCTTAACTTGAGTGGACTGGCA 60.810 50.000 0.00 0.00 0.00 4.92
2024 3921 2.839486 TAACTTGAGTGGACTGGCAG 57.161 50.000 14.16 14.16 0.00 4.85
2025 3922 0.536006 AACTTGAGTGGACTGGCAGC 60.536 55.000 15.89 7.42 0.00 5.25
2026 3923 1.374190 CTTGAGTGGACTGGCAGCT 59.626 57.895 15.89 2.80 0.00 4.24
2027 3924 0.610174 CTTGAGTGGACTGGCAGCTA 59.390 55.000 15.89 2.42 0.00 3.32
2028 3925 0.321671 TTGAGTGGACTGGCAGCTAC 59.678 55.000 15.89 14.93 0.00 3.58
2029 3926 1.219393 GAGTGGACTGGCAGCTACC 59.781 63.158 15.89 15.80 0.00 3.18
2030 3927 2.245438 GAGTGGACTGGCAGCTACCC 62.245 65.000 15.89 11.31 0.00 3.69
2031 3928 3.009115 TGGACTGGCAGCTACCCC 61.009 66.667 15.89 8.79 0.00 4.95
2032 3929 3.009115 GGACTGGCAGCTACCCCA 61.009 66.667 15.89 0.00 0.00 4.96
2051 3948 2.113139 CTGTCCAGCCAACGGGTT 59.887 61.111 0.00 0.00 36.17 4.11
2052 3949 2.203280 TGTCCAGCCAACGGGTTG 60.203 61.111 4.58 4.58 44.38 3.77
2057 3954 2.203294 AGCCAACGGGTTGACACC 60.203 61.111 12.89 0.00 42.93 4.16
2066 3963 2.142220 GGTTGACACCCTGTCCTCA 58.858 57.895 0.00 0.00 46.40 3.86
2067 3964 0.472471 GGTTGACACCCTGTCCTCAA 59.528 55.000 0.00 0.00 46.40 3.02
2068 3965 1.594331 GTTGACACCCTGTCCTCAAC 58.406 55.000 0.00 0.00 46.40 3.18
2069 3966 1.134220 GTTGACACCCTGTCCTCAACA 60.134 52.381 4.83 0.00 46.40 3.33
2070 3967 1.434188 TGACACCCTGTCCTCAACAT 58.566 50.000 0.00 0.00 46.40 2.71
2071 3968 1.072173 TGACACCCTGTCCTCAACATG 59.928 52.381 0.00 0.00 46.40 3.21
2072 3969 0.401738 ACACCCTGTCCTCAACATGG 59.598 55.000 0.00 0.00 46.14 3.66
2073 3970 0.692476 CACCCTGTCCTCAACATGGA 59.308 55.000 6.51 0.00 44.16 3.41
2085 3982 7.914427 TCCTCAACATGGACTAGTAACATAT 57.086 36.000 11.08 0.00 0.00 1.78
2086 3983 7.726216 TCCTCAACATGGACTAGTAACATATG 58.274 38.462 11.08 0.00 0.00 1.78
2087 3984 6.425114 CCTCAACATGGACTAGTAACATATGC 59.575 42.308 11.08 0.00 0.00 3.14
2088 3985 6.883744 TCAACATGGACTAGTAACATATGCA 58.116 36.000 11.08 0.00 0.00 3.96
2089 3986 7.508687 TCAACATGGACTAGTAACATATGCAT 58.491 34.615 3.79 3.79 0.00 3.96
2090 3987 7.442062 TCAACATGGACTAGTAACATATGCATG 59.558 37.037 10.16 9.01 42.72 4.06
2111 4008 8.680903 TGCATGTTACTACTAGTAAGTTACTCC 58.319 37.037 18.77 0.32 40.95 3.85
2112 4009 8.134261 GCATGTTACTACTAGTAAGTTACTCCC 58.866 40.741 18.77 1.23 40.95 4.30
2113 4010 8.628280 CATGTTACTACTAGTAAGTTACTCCCC 58.372 40.741 18.77 1.71 40.95 4.81
2114 4011 7.698912 TGTTACTACTAGTAAGTTACTCCCCA 58.301 38.462 18.77 1.08 40.95 4.96
2115 4012 7.611855 TGTTACTACTAGTAAGTTACTCCCCAC 59.388 40.741 18.77 8.66 40.95 4.61
2116 4013 6.400096 ACTACTAGTAAGTTACTCCCCACT 57.600 41.667 18.77 0.00 40.14 4.00
2117 4014 7.516450 ACTACTAGTAAGTTACTCCCCACTA 57.484 40.000 18.77 0.00 40.14 2.74
2118 4015 8.111928 ACTACTAGTAAGTTACTCCCCACTAT 57.888 38.462 18.77 0.00 40.14 2.12
2119 4016 7.997803 ACTACTAGTAAGTTACTCCCCACTATG 59.002 40.741 18.77 4.51 40.14 2.23
2120 4017 6.978261 ACTAGTAAGTTACTCCCCACTATGA 58.022 40.000 18.77 0.00 40.14 2.15
2121 4018 6.832900 ACTAGTAAGTTACTCCCCACTATGAC 59.167 42.308 18.77 0.00 40.14 3.06
2122 4019 4.961099 AGTAAGTTACTCCCCACTATGACC 59.039 45.833 9.85 0.00 32.47 4.02
2123 4020 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
2124 4021 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
2125 4022 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
2126 4023 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
2130 4027 1.843851 CCCCACTATGACCAGCCTAAA 59.156 52.381 0.00 0.00 0.00 1.85
2144 4041 2.684881 AGCCTAAACAATCAGGAATGCG 59.315 45.455 0.00 0.00 33.42 4.73
2146 4043 2.223572 CCTAAACAATCAGGAATGCGGC 60.224 50.000 0.00 0.00 33.42 6.53
2147 4044 1.549203 AAACAATCAGGAATGCGGCT 58.451 45.000 0.00 0.00 0.00 5.52
2148 4045 0.813184 AACAATCAGGAATGCGGCTG 59.187 50.000 0.00 0.00 0.00 4.85
2166 4066 3.119708 GGCTGGTACATGAAAGAAAGCTG 60.120 47.826 0.00 0.00 38.20 4.24
2167 4067 3.671702 GCTGGTACATGAAAGAAAGCTGC 60.672 47.826 0.00 0.00 38.20 5.25
2168 4068 3.754965 TGGTACATGAAAGAAAGCTGCT 58.245 40.909 0.00 0.00 0.00 4.24
2175 4075 5.587844 ACATGAAAGAAAGCTGCTATACCTG 59.412 40.000 0.90 0.00 0.00 4.00
2199 4099 3.928992 TCATTTCTCACGCACAATCTCTC 59.071 43.478 0.00 0.00 0.00 3.20
2240 4140 1.303236 CCCGACAAGCCATCAACCA 60.303 57.895 0.00 0.00 0.00 3.67
2440 4342 2.024176 TTTACAGCAGAGGACCCTGA 57.976 50.000 12.63 0.00 36.29 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.451714 TCCCCAATTCATCAAATCCCTAATT 58.548 36.000 0.00 0.00 0.00 1.40
36 37 8.664211 AGGTGTTTTGTGTAAAAAGTCAAAAA 57.336 26.923 0.00 0.00 37.51 1.94
62 63 5.448654 TCTAATTAGGCCAATCTTGCATGT 58.551 37.500 12.54 0.00 0.00 3.21
82 83 2.950309 GACCGCCACATACTCTTCTCTA 59.050 50.000 0.00 0.00 0.00 2.43
126 127 1.868692 CGACGTACGCGGTGCATAA 60.869 57.895 16.72 0.00 43.45 1.90
137 138 8.810427 TGAAAATAAGGTCATTATTCGACGTAC 58.190 33.333 3.12 0.00 42.14 3.67
184 185 7.053498 TGCACTTAGGAATATGCTCATTACAA 58.947 34.615 0.00 0.00 38.90 2.41
185 186 6.591001 TGCACTTAGGAATATGCTCATTACA 58.409 36.000 0.00 0.00 38.90 2.41
186 187 6.708054 ACTGCACTTAGGAATATGCTCATTAC 59.292 38.462 0.00 0.00 38.90 1.89
195 196 5.615289 GATGGTCACTGCACTTAGGAATAT 58.385 41.667 0.00 0.00 0.00 1.28
319 330 5.882040 TGTCTGGTAATACATGGAAAACCA 58.118 37.500 12.83 12.83 35.75 3.67
387 591 2.415893 CGGCCCAGCTATCAAGTTTTTG 60.416 50.000 0.00 0.00 35.57 2.44
448 652 5.599999 ACTCAGTATGTGATGGTCCTTAC 57.400 43.478 0.00 0.00 37.40 2.34
523 2324 0.897863 TAGCATTTTTGGCCTGGCGT 60.898 50.000 13.40 0.00 0.00 5.68
524 2325 0.179129 CTAGCATTTTTGGCCTGGCG 60.179 55.000 13.40 0.00 0.00 5.69
525 2326 1.134995 GTCTAGCATTTTTGGCCTGGC 60.135 52.381 11.05 11.05 0.00 4.85
526 2327 2.170166 TGTCTAGCATTTTTGGCCTGG 58.830 47.619 3.32 0.00 0.00 4.45
527 2328 4.398988 TGTATGTCTAGCATTTTTGGCCTG 59.601 41.667 3.32 0.00 38.94 4.85
528 2329 4.599041 TGTATGTCTAGCATTTTTGGCCT 58.401 39.130 3.32 0.00 38.94 5.19
529 2330 4.981806 TGTATGTCTAGCATTTTTGGCC 57.018 40.909 0.00 0.00 38.94 5.36
530 2331 6.528072 GTCTTTGTATGTCTAGCATTTTTGGC 59.472 38.462 5.22 0.00 38.94 4.52
531 2332 7.820648 AGTCTTTGTATGTCTAGCATTTTTGG 58.179 34.615 5.22 0.00 38.94 3.28
534 2335 9.502091 TGTAAGTCTTTGTATGTCTAGCATTTT 57.498 29.630 5.22 0.00 38.94 1.82
535 2336 8.936864 GTGTAAGTCTTTGTATGTCTAGCATTT 58.063 33.333 5.22 0.00 38.94 2.32
536 2337 7.275779 CGTGTAAGTCTTTGTATGTCTAGCATT 59.724 37.037 5.22 0.00 38.94 3.56
537 2338 6.752351 CGTGTAAGTCTTTGTATGTCTAGCAT 59.248 38.462 0.00 5.25 41.42 3.79
538 2339 6.090783 CGTGTAAGTCTTTGTATGTCTAGCA 58.909 40.000 0.00 0.00 0.00 3.49
539 2340 5.004535 GCGTGTAAGTCTTTGTATGTCTAGC 59.995 44.000 0.00 0.00 0.00 3.42
540 2341 6.323266 AGCGTGTAAGTCTTTGTATGTCTAG 58.677 40.000 0.00 0.00 0.00 2.43
541 2342 6.263516 AGCGTGTAAGTCTTTGTATGTCTA 57.736 37.500 0.00 0.00 0.00 2.59
542 2343 5.135508 AGCGTGTAAGTCTTTGTATGTCT 57.864 39.130 0.00 0.00 0.00 3.41
543 2344 5.840940 AAGCGTGTAAGTCTTTGTATGTC 57.159 39.130 0.00 0.00 0.00 3.06
544 2345 6.613755 AAAAGCGTGTAAGTCTTTGTATGT 57.386 33.333 0.00 0.00 31.21 2.29
545 2346 7.529519 GTGTAAAAGCGTGTAAGTCTTTGTATG 59.470 37.037 0.00 0.00 31.21 2.39
546 2347 7.568134 CGTGTAAAAGCGTGTAAGTCTTTGTAT 60.568 37.037 0.00 0.00 31.21 2.29
547 2348 6.291743 CGTGTAAAAGCGTGTAAGTCTTTGTA 60.292 38.462 0.00 0.00 31.21 2.41
548 2349 5.501252 CGTGTAAAAGCGTGTAAGTCTTTGT 60.501 40.000 0.00 0.00 31.21 2.83
549 2350 4.896238 CGTGTAAAAGCGTGTAAGTCTTTG 59.104 41.667 0.00 0.00 31.21 2.77
550 2351 4.551410 GCGTGTAAAAGCGTGTAAGTCTTT 60.551 41.667 0.00 0.00 0.00 2.52
551 2352 3.060070 GCGTGTAAAAGCGTGTAAGTCTT 60.060 43.478 0.00 0.00 0.00 3.01
552 2353 2.473984 GCGTGTAAAAGCGTGTAAGTCT 59.526 45.455 0.00 0.00 0.00 3.24
553 2354 2.473984 AGCGTGTAAAAGCGTGTAAGTC 59.526 45.455 0.00 0.00 38.61 3.01
554 2355 2.473984 GAGCGTGTAAAAGCGTGTAAGT 59.526 45.455 0.00 0.00 38.61 2.24
555 2356 2.159881 GGAGCGTGTAAAAGCGTGTAAG 60.160 50.000 0.00 0.00 38.61 2.34
556 2357 1.794116 GGAGCGTGTAAAAGCGTGTAA 59.206 47.619 0.00 0.00 38.61 2.41
557 2358 1.000060 AGGAGCGTGTAAAAGCGTGTA 60.000 47.619 0.00 0.00 38.61 2.90
558 2359 0.249741 AGGAGCGTGTAAAAGCGTGT 60.250 50.000 0.00 0.00 38.61 4.49
559 2360 0.865769 AAGGAGCGTGTAAAAGCGTG 59.134 50.000 0.00 0.00 38.61 5.34
560 2361 1.145803 GAAGGAGCGTGTAAAAGCGT 58.854 50.000 0.00 0.00 38.61 5.07
561 2362 0.442699 GGAAGGAGCGTGTAAAAGCG 59.557 55.000 0.00 0.00 38.61 4.68
562 2363 1.519408 TGGAAGGAGCGTGTAAAAGC 58.481 50.000 0.00 0.00 0.00 3.51
563 2364 3.600388 AGATGGAAGGAGCGTGTAAAAG 58.400 45.455 0.00 0.00 0.00 2.27
564 2365 3.695830 AGATGGAAGGAGCGTGTAAAA 57.304 42.857 0.00 0.00 0.00 1.52
565 2366 4.020928 TGTTAGATGGAAGGAGCGTGTAAA 60.021 41.667 0.00 0.00 0.00 2.01
566 2367 3.512329 TGTTAGATGGAAGGAGCGTGTAA 59.488 43.478 0.00 0.00 0.00 2.41
567 2368 3.093814 TGTTAGATGGAAGGAGCGTGTA 58.906 45.455 0.00 0.00 0.00 2.90
568 2369 1.899814 TGTTAGATGGAAGGAGCGTGT 59.100 47.619 0.00 0.00 0.00 4.49
569 2370 2.672961 TGTTAGATGGAAGGAGCGTG 57.327 50.000 0.00 0.00 0.00 5.34
570 2371 2.354805 GGTTGTTAGATGGAAGGAGCGT 60.355 50.000 0.00 0.00 0.00 5.07
571 2372 2.280628 GGTTGTTAGATGGAAGGAGCG 58.719 52.381 0.00 0.00 0.00 5.03
572 2373 3.350219 TGGTTGTTAGATGGAAGGAGC 57.650 47.619 0.00 0.00 0.00 4.70
573 2374 5.355350 GTGATTGGTTGTTAGATGGAAGGAG 59.645 44.000 0.00 0.00 0.00 3.69
574 2375 5.222027 TGTGATTGGTTGTTAGATGGAAGGA 60.222 40.000 0.00 0.00 0.00 3.36
575 2376 5.009631 TGTGATTGGTTGTTAGATGGAAGG 58.990 41.667 0.00 0.00 0.00 3.46
576 2377 6.573664 TTGTGATTGGTTGTTAGATGGAAG 57.426 37.500 0.00 0.00 0.00 3.46
577 2378 6.239176 GGTTTGTGATTGGTTGTTAGATGGAA 60.239 38.462 0.00 0.00 0.00 3.53
578 2379 5.242838 GGTTTGTGATTGGTTGTTAGATGGA 59.757 40.000 0.00 0.00 0.00 3.41
579 2380 5.243730 AGGTTTGTGATTGGTTGTTAGATGG 59.756 40.000 0.00 0.00 0.00 3.51
580 2381 6.207417 AGAGGTTTGTGATTGGTTGTTAGATG 59.793 38.462 0.00 0.00 0.00 2.90
581 2382 6.306987 AGAGGTTTGTGATTGGTTGTTAGAT 58.693 36.000 0.00 0.00 0.00 1.98
582 2383 5.690865 AGAGGTTTGTGATTGGTTGTTAGA 58.309 37.500 0.00 0.00 0.00 2.10
583 2384 5.048713 GGAGAGGTTTGTGATTGGTTGTTAG 60.049 44.000 0.00 0.00 0.00 2.34
584 2385 4.825085 GGAGAGGTTTGTGATTGGTTGTTA 59.175 41.667 0.00 0.00 0.00 2.41
585 2386 3.636764 GGAGAGGTTTGTGATTGGTTGTT 59.363 43.478 0.00 0.00 0.00 2.83
586 2387 3.222603 GGAGAGGTTTGTGATTGGTTGT 58.777 45.455 0.00 0.00 0.00 3.32
587 2388 2.558359 GGGAGAGGTTTGTGATTGGTTG 59.442 50.000 0.00 0.00 0.00 3.77
588 2389 2.490902 GGGGAGAGGTTTGTGATTGGTT 60.491 50.000 0.00 0.00 0.00 3.67
589 2390 1.075536 GGGGAGAGGTTTGTGATTGGT 59.924 52.381 0.00 0.00 0.00 3.67
590 2391 1.616994 GGGGGAGAGGTTTGTGATTGG 60.617 57.143 0.00 0.00 0.00 3.16
591 2392 1.839424 GGGGGAGAGGTTTGTGATTG 58.161 55.000 0.00 0.00 0.00 2.67
611 2412 2.236146 GGCCCACCCTTTAAAAATCAGG 59.764 50.000 0.00 0.00 0.00 3.86
612 2413 2.094234 CGGCCCACCCTTTAAAAATCAG 60.094 50.000 0.00 0.00 0.00 2.90
613 2414 1.896465 CGGCCCACCCTTTAAAAATCA 59.104 47.619 0.00 0.00 0.00 2.57
614 2415 1.404986 GCGGCCCACCCTTTAAAAATC 60.405 52.381 0.00 0.00 0.00 2.17
615 2416 0.611200 GCGGCCCACCCTTTAAAAAT 59.389 50.000 0.00 0.00 0.00 1.82
616 2417 1.473497 GGCGGCCCACCCTTTAAAAA 61.473 55.000 8.12 0.00 0.00 1.94
617 2418 1.909287 GGCGGCCCACCCTTTAAAA 60.909 57.895 8.12 0.00 0.00 1.52
618 2419 2.283316 GGCGGCCCACCCTTTAAA 60.283 61.111 8.12 0.00 0.00 1.52
619 2420 4.369837 GGGCGGCCCACCCTTTAA 62.370 66.667 32.90 0.00 44.65 1.52
631 2432 3.861797 AATAGGTGAGCGGGGCGG 61.862 66.667 0.00 0.00 0.00 6.13
632 2433 2.588877 CAATAGGTGAGCGGGGCG 60.589 66.667 0.00 0.00 0.00 6.13
633 2434 1.523938 GTCAATAGGTGAGCGGGGC 60.524 63.158 0.00 0.00 36.74 5.80
634 2435 1.146263 GGTCAATAGGTGAGCGGGG 59.854 63.158 0.00 0.00 44.38 5.73
635 2436 4.857251 GGTCAATAGGTGAGCGGG 57.143 61.111 0.00 0.00 44.38 6.13
639 2440 8.616076 GTTAATCTTGATTGGTCAATAGGTGAG 58.384 37.037 6.15 0.00 43.08 3.51
640 2441 7.556275 GGTTAATCTTGATTGGTCAATAGGTGA 59.444 37.037 6.15 0.00 43.08 4.02
641 2442 7.339212 TGGTTAATCTTGATTGGTCAATAGGTG 59.661 37.037 6.15 0.00 43.08 4.00
642 2443 7.410174 TGGTTAATCTTGATTGGTCAATAGGT 58.590 34.615 6.15 0.00 43.08 3.08
643 2444 7.880160 TGGTTAATCTTGATTGGTCAATAGG 57.120 36.000 6.15 0.00 43.08 2.57
644 2445 8.571336 GGATGGTTAATCTTGATTGGTCAATAG 58.429 37.037 6.15 0.00 43.08 1.73
645 2446 8.281531 AGGATGGTTAATCTTGATTGGTCAATA 58.718 33.333 6.15 0.00 43.08 1.90
646 2447 7.069085 CAGGATGGTTAATCTTGATTGGTCAAT 59.931 37.037 6.15 0.00 43.40 2.57
647 2448 6.377996 CAGGATGGTTAATCTTGATTGGTCAA 59.622 38.462 6.15 0.00 43.40 3.18
648 2449 5.887598 CAGGATGGTTAATCTTGATTGGTCA 59.112 40.000 6.15 2.60 43.40 4.02
649 2450 5.888161 ACAGGATGGTTAATCTTGATTGGTC 59.112 40.000 6.15 0.00 43.40 4.02
650 2451 5.831103 ACAGGATGGTTAATCTTGATTGGT 58.169 37.500 6.15 0.00 43.40 3.67
651 2452 7.880160 TTACAGGATGGTTAATCTTGATTGG 57.120 36.000 6.15 0.00 43.40 3.16
652 2453 9.793252 CTTTTACAGGATGGTTAATCTTGATTG 57.207 33.333 6.15 0.00 43.40 2.67
653 2454 8.470002 GCTTTTACAGGATGGTTAATCTTGATT 58.530 33.333 4.67 1.35 43.40 2.57
654 2455 7.836183 AGCTTTTACAGGATGGTTAATCTTGAT 59.164 33.333 4.67 0.00 43.40 2.57
655 2456 7.175104 AGCTTTTACAGGATGGTTAATCTTGA 58.825 34.615 4.67 0.00 43.40 3.02
656 2457 7.396540 AGCTTTTACAGGATGGTTAATCTTG 57.603 36.000 0.00 0.00 45.55 3.02
657 2458 7.451566 ACAAGCTTTTACAGGATGGTTAATCTT 59.548 33.333 0.00 0.00 43.62 2.40
658 2459 6.948309 ACAAGCTTTTACAGGATGGTTAATCT 59.052 34.615 0.00 0.00 43.62 2.40
659 2460 7.158099 ACAAGCTTTTACAGGATGGTTAATC 57.842 36.000 0.00 0.00 43.62 1.75
660 2461 8.644374 TTACAAGCTTTTACAGGATGGTTAAT 57.356 30.769 0.00 0.00 43.62 1.40
661 2462 8.466617 TTTACAAGCTTTTACAGGATGGTTAA 57.533 30.769 0.00 0.00 43.62 2.01
662 2463 8.644374 ATTTACAAGCTTTTACAGGATGGTTA 57.356 30.769 0.00 0.00 43.62 2.85
663 2464 6.969993 TTTACAAGCTTTTACAGGATGGTT 57.030 33.333 0.00 0.00 43.62 3.67
664 2465 6.128007 CGATTTACAAGCTTTTACAGGATGGT 60.128 38.462 0.00 0.00 43.62 3.55
665 2466 6.128007 ACGATTTACAAGCTTTTACAGGATGG 60.128 38.462 0.00 0.00 43.62 3.51
666 2467 6.842163 ACGATTTACAAGCTTTTACAGGATG 58.158 36.000 0.00 0.00 46.00 3.51
667 2468 7.448748 AACGATTTACAAGCTTTTACAGGAT 57.551 32.000 0.00 0.00 0.00 3.24
668 2469 6.870971 AACGATTTACAAGCTTTTACAGGA 57.129 33.333 0.00 0.00 0.00 3.86
669 2470 6.915843 ACAAACGATTTACAAGCTTTTACAGG 59.084 34.615 0.00 0.00 0.00 4.00
670 2471 7.908193 ACAAACGATTTACAAGCTTTTACAG 57.092 32.000 0.00 0.00 0.00 2.74
671 2472 8.770850 GTACAAACGATTTACAAGCTTTTACA 57.229 30.769 0.00 0.00 0.00 2.41
689 2490 2.723618 CGGCAATGCTACACGTACAAAC 60.724 50.000 4.82 0.00 0.00 2.93
690 2491 1.461512 CGGCAATGCTACACGTACAAA 59.538 47.619 4.82 0.00 0.00 2.83
691 2492 1.072391 CGGCAATGCTACACGTACAA 58.928 50.000 4.82 0.00 0.00 2.41
692 2493 0.244178 TCGGCAATGCTACACGTACA 59.756 50.000 4.82 0.00 0.00 2.90
693 2494 0.643820 GTCGGCAATGCTACACGTAC 59.356 55.000 4.82 0.00 0.00 3.67
694 2495 0.244178 TGTCGGCAATGCTACACGTA 59.756 50.000 4.82 0.00 0.00 3.57
695 2496 1.005512 TGTCGGCAATGCTACACGT 60.006 52.632 4.82 0.00 0.00 4.49
696 2497 1.419922 GTGTCGGCAATGCTACACG 59.580 57.895 21.52 10.93 36.41 4.49
697 2498 0.953471 TGGTGTCGGCAATGCTACAC 60.953 55.000 25.23 25.23 41.19 2.90
698 2499 0.673333 CTGGTGTCGGCAATGCTACA 60.673 55.000 4.82 7.51 0.00 2.74
699 2500 1.369091 CCTGGTGTCGGCAATGCTAC 61.369 60.000 4.82 4.75 0.00 3.58
700 2501 1.078497 CCTGGTGTCGGCAATGCTA 60.078 57.895 4.82 0.00 0.00 3.49
701 2502 2.360350 CCTGGTGTCGGCAATGCT 60.360 61.111 4.82 0.00 0.00 3.79
702 2503 4.120331 GCCTGGTGTCGGCAATGC 62.120 66.667 0.00 0.00 46.77 3.56
708 2509 2.978010 GGTTGTGCCTGGTGTCGG 60.978 66.667 0.00 0.00 0.00 4.79
709 2510 2.203139 TGGTTGTGCCTGGTGTCG 60.203 61.111 0.00 0.00 38.35 4.35
710 2511 3.749981 CTGGTTGTGCCTGGTGTC 58.250 61.111 0.00 0.00 38.35 3.67
753 2554 4.136796 AGTTTTACTTAACGAACCCCCAC 58.863 43.478 0.00 0.00 33.26 4.61
896 2697 7.824289 TGTTGAGGTTTTATAAGGAGATCAGTG 59.176 37.037 0.00 0.00 0.00 3.66
897 2698 7.918076 TGTTGAGGTTTTATAAGGAGATCAGT 58.082 34.615 0.00 0.00 0.00 3.41
898 2699 8.792830 TTGTTGAGGTTTTATAAGGAGATCAG 57.207 34.615 0.00 0.00 0.00 2.90
899 2700 9.010029 GTTTGTTGAGGTTTTATAAGGAGATCA 57.990 33.333 0.00 0.00 0.00 2.92
903 2704 6.071560 GGGGTTTGTTGAGGTTTTATAAGGAG 60.072 42.308 0.00 0.00 0.00 3.69
907 2708 7.273712 GTTTGGGGTTTGTTGAGGTTTTATAA 58.726 34.615 0.00 0.00 0.00 0.98
968 2769 0.871722 TTTCCTGCGTGTGTATGTGC 59.128 50.000 0.00 0.00 0.00 4.57
1020 2821 1.673760 CAAAAACGATGACTGCACCG 58.326 50.000 0.00 0.00 0.00 4.94
1030 2831 2.350772 CGAAGAGCAAGGCAAAAACGAT 60.351 45.455 0.00 0.00 0.00 3.73
1067 2868 2.759114 CAAGGGGAAGGCAGAGCA 59.241 61.111 0.00 0.00 0.00 4.26
1133 2947 5.128205 TGGATGGATGCATCTCAAAACTAG 58.872 41.667 25.28 0.00 0.00 2.57
1134 2948 5.114764 TGGATGGATGCATCTCAAAACTA 57.885 39.130 25.28 12.21 0.00 2.24
1249 3109 1.423161 TCATCACCAACCACATCCACA 59.577 47.619 0.00 0.00 0.00 4.17
1250 3110 1.812571 GTCATCACCAACCACATCCAC 59.187 52.381 0.00 0.00 0.00 4.02
1251 3111 1.610363 CGTCATCACCAACCACATCCA 60.610 52.381 0.00 0.00 0.00 3.41
1252 3112 1.086696 CGTCATCACCAACCACATCC 58.913 55.000 0.00 0.00 0.00 3.51
1253 3113 0.447801 GCGTCATCACCAACCACATC 59.552 55.000 0.00 0.00 0.00 3.06
1317 3177 2.432628 GCAACTCCACCGTCCTCG 60.433 66.667 0.00 0.00 0.00 4.63
1461 3321 0.899019 GGGGAAGGTCTGACAGACTC 59.101 60.000 29.70 21.47 44.46 3.36
1466 3326 2.525629 TGCGGGGAAGGTCTGACA 60.526 61.111 10.38 0.00 0.00 3.58
1519 3388 6.153680 AGCAGTAGTAAAACACTGATCTAGCT 59.846 38.462 5.93 0.00 43.99 3.32
1520 3389 6.334202 AGCAGTAGTAAAACACTGATCTAGC 58.666 40.000 5.93 0.00 43.99 3.42
1521 3390 7.916450 GGTAGCAGTAGTAAAACACTGATCTAG 59.084 40.741 5.93 0.00 43.99 2.43
1522 3391 7.414873 CGGTAGCAGTAGTAAAACACTGATCTA 60.415 40.741 5.93 0.00 43.99 1.98
1523 3392 6.625300 CGGTAGCAGTAGTAAAACACTGATCT 60.625 42.308 5.93 0.00 43.99 2.75
1525 3400 5.408356 CGGTAGCAGTAGTAAAACACTGAT 58.592 41.667 5.93 1.96 43.99 2.90
1528 3403 3.582780 GCGGTAGCAGTAGTAAAACACT 58.417 45.455 0.00 0.00 44.35 3.55
1529 3404 3.985912 GCGGTAGCAGTAGTAAAACAC 57.014 47.619 0.00 0.00 44.35 3.32
1547 3422 2.231215 AGCCTGCAAATCTAGTAGCG 57.769 50.000 0.00 0.00 0.00 4.26
1548 3423 2.615912 CCAAGCCTGCAAATCTAGTAGC 59.384 50.000 0.00 0.00 0.00 3.58
1569 3455 7.713073 GCATCTAAGCTATATTTGGGTATCCTC 59.287 40.741 0.00 0.00 0.00 3.71
1592 3478 6.554784 TCATCATTCCATAGTATTTGGGCAT 58.445 36.000 0.00 0.00 34.85 4.40
1594 3480 6.626623 GCATCATCATTCCATAGTATTTGGGC 60.627 42.308 0.00 0.00 34.85 5.36
1603 3489 3.245158 ACCAGGGCATCATCATTCCATAG 60.245 47.826 0.00 0.00 0.00 2.23
1612 3498 0.323725 ACCACAACCAGGGCATCATC 60.324 55.000 0.00 0.00 0.00 2.92
1623 3509 2.801077 ATACCTAGCCAACCACAACC 57.199 50.000 0.00 0.00 0.00 3.77
1628 3514 7.450074 CAACTAATGATATACCTAGCCAACCA 58.550 38.462 0.00 0.00 0.00 3.67
1642 3528 4.901849 AGGCTAGCTGACCAACTAATGATA 59.098 41.667 15.72 0.00 0.00 2.15
1643 3529 3.713764 AGGCTAGCTGACCAACTAATGAT 59.286 43.478 15.72 0.00 0.00 2.45
1645 3531 3.550437 AGGCTAGCTGACCAACTAATG 57.450 47.619 15.72 0.00 0.00 1.90
1650 3536 3.206964 GGATTAAGGCTAGCTGACCAAC 58.793 50.000 15.72 0.00 0.00 3.77
1652 3538 2.435805 CTGGATTAAGGCTAGCTGACCA 59.564 50.000 15.72 13.80 0.00 4.02
1654 3540 2.158900 TGCTGGATTAAGGCTAGCTGAC 60.159 50.000 15.72 0.00 40.12 3.51
1656 3542 2.627515 TGCTGGATTAAGGCTAGCTG 57.372 50.000 15.72 0.00 40.12 4.24
1657 3543 2.039613 GGATGCTGGATTAAGGCTAGCT 59.960 50.000 15.72 0.00 40.12 3.32
1658 3544 2.224621 TGGATGCTGGATTAAGGCTAGC 60.225 50.000 6.04 6.04 39.91 3.42
1660 3546 3.716353 TCTTGGATGCTGGATTAAGGCTA 59.284 43.478 0.00 0.00 0.00 3.93
1708 3594 4.777896 ACTCCTATCCAGCAGTTCTTGTAA 59.222 41.667 0.00 0.00 0.00 2.41
1710 3596 3.177228 ACTCCTATCCAGCAGTTCTTGT 58.823 45.455 0.00 0.00 0.00 3.16
1804 3699 2.944094 GCCAAACTGATTACCGGTGGAT 60.944 50.000 19.93 11.47 33.87 3.41
1824 3720 1.667724 GCATATGGCACTGATATCCGC 59.332 52.381 4.56 0.32 43.97 5.54
1825 3721 1.929169 CGCATATGGCACTGATATCCG 59.071 52.381 4.56 0.00 45.17 4.18
1827 3723 3.329386 ACACGCATATGGCACTGATATC 58.671 45.455 4.56 0.00 45.17 1.63
1835 3731 1.819928 AGTTTGACACGCATATGGCA 58.180 45.000 4.56 0.00 45.17 4.92
1837 3733 6.656314 TTACTAAGTTTGACACGCATATGG 57.344 37.500 4.56 0.00 0.00 2.74
1838 3734 9.031360 AGTATTACTAAGTTTGACACGCATATG 57.969 33.333 0.00 0.00 0.00 1.78
1839 3735 9.595823 AAGTATTACTAAGTTTGACACGCATAT 57.404 29.630 0.00 0.00 0.00 1.78
1844 3740 9.365311 CAACAAAGTATTACTAAGTTTGACACG 57.635 33.333 11.22 0.00 38.84 4.49
1857 3754 5.981174 TGTGAAGACGCAACAAAGTATTAC 58.019 37.500 0.00 0.00 33.38 1.89
1858 3755 6.795098 ATGTGAAGACGCAACAAAGTATTA 57.205 33.333 0.00 0.00 39.99 0.98
1859 3756 5.689383 ATGTGAAGACGCAACAAAGTATT 57.311 34.783 0.00 0.00 39.99 1.89
1860 3757 5.163992 CGTATGTGAAGACGCAACAAAGTAT 60.164 40.000 0.00 0.00 39.99 2.12
1861 3758 4.149221 CGTATGTGAAGACGCAACAAAGTA 59.851 41.667 0.00 0.00 39.99 2.24
1862 3759 3.059868 CGTATGTGAAGACGCAACAAAGT 60.060 43.478 0.00 0.00 39.99 2.66
1863 3760 3.469629 CGTATGTGAAGACGCAACAAAG 58.530 45.455 0.00 0.00 39.99 2.77
1872 3769 2.870411 GCCATAACCCGTATGTGAAGAC 59.130 50.000 0.00 0.00 38.38 3.01
1874 3771 2.872245 CTGCCATAACCCGTATGTGAAG 59.128 50.000 0.00 0.00 38.38 3.02
1882 3779 0.981183 TTCAGTCTGCCATAACCCGT 59.019 50.000 0.00 0.00 0.00 5.28
1888 3785 1.557099 ACGAGGTTCAGTCTGCCATA 58.443 50.000 0.00 0.00 0.00 2.74
1895 3792 1.340248 TCACCAGAACGAGGTTCAGTC 59.660 52.381 10.74 0.00 44.11 3.51
1903 3800 5.352284 AGCTATTACAATCACCAGAACGAG 58.648 41.667 0.00 0.00 0.00 4.18
1928 3825 2.498167 GAGAAAACAGAGCAAGAGCCA 58.502 47.619 0.00 0.00 43.56 4.75
1930 3827 2.777094 AGGAGAAAACAGAGCAAGAGC 58.223 47.619 0.00 0.00 42.56 4.09
1946 3843 3.071874 TGCCCATTGTGTTAGAAGGAG 57.928 47.619 0.00 0.00 0.00 3.69
1947 3844 3.737559 ATGCCCATTGTGTTAGAAGGA 57.262 42.857 0.00 0.00 0.00 3.36
1948 3845 4.114058 CAATGCCCATTGTGTTAGAAGG 57.886 45.455 11.80 0.00 42.32 3.46
1959 3856 1.038681 TGATGCGAGCAATGCCCATT 61.039 50.000 0.00 0.00 0.00 3.16
1960 3857 1.454295 TGATGCGAGCAATGCCCAT 60.454 52.632 0.00 2.24 0.00 4.00
1961 3858 2.045143 TGATGCGAGCAATGCCCA 60.045 55.556 0.00 0.00 0.00 5.36
1962 3859 2.409055 TGTGATGCGAGCAATGCCC 61.409 57.895 0.00 0.00 0.00 5.36
1963 3860 1.226491 GTGTGATGCGAGCAATGCC 60.226 57.895 0.00 0.00 0.00 4.40
1964 3861 1.009078 TAGTGTGATGCGAGCAATGC 58.991 50.000 0.57 0.00 0.00 3.56
1975 3872 5.178797 GGCTTTGACATGTAGTAGTGTGAT 58.821 41.667 0.00 0.00 0.00 3.06
1978 3875 3.585862 CGGCTTTGACATGTAGTAGTGT 58.414 45.455 0.00 0.00 0.00 3.55
1985 3882 1.377987 GCCCCGGCTTTGACATGTA 60.378 57.895 0.00 0.00 38.26 2.29
1986 3883 2.676471 GCCCCGGCTTTGACATGT 60.676 61.111 0.00 0.00 38.26 3.21
1996 3893 1.002502 ACTCAAGTTAAGCCCCGGC 60.003 57.895 0.00 0.00 42.33 6.13
1997 3894 0.676782 CCACTCAAGTTAAGCCCCGG 60.677 60.000 0.00 0.00 0.00 5.73
1998 3895 0.323629 TCCACTCAAGTTAAGCCCCG 59.676 55.000 0.00 0.00 0.00 5.73
1999 3896 1.351350 AGTCCACTCAAGTTAAGCCCC 59.649 52.381 0.00 0.00 0.00 5.80
2000 3897 2.427506 CAGTCCACTCAAGTTAAGCCC 58.572 52.381 0.00 0.00 0.00 5.19
2001 3898 2.427506 CCAGTCCACTCAAGTTAAGCC 58.572 52.381 0.00 0.00 0.00 4.35
2002 3899 1.807142 GCCAGTCCACTCAAGTTAAGC 59.193 52.381 0.00 0.00 0.00 3.09
2003 3900 3.070018 CTGCCAGTCCACTCAAGTTAAG 58.930 50.000 0.00 0.00 0.00 1.85
2004 3901 2.810400 GCTGCCAGTCCACTCAAGTTAA 60.810 50.000 0.00 0.00 0.00 2.01
2005 3902 1.270839 GCTGCCAGTCCACTCAAGTTA 60.271 52.381 0.00 0.00 0.00 2.24
2006 3903 0.536006 GCTGCCAGTCCACTCAAGTT 60.536 55.000 0.00 0.00 0.00 2.66
2007 3904 1.072159 GCTGCCAGTCCACTCAAGT 59.928 57.895 0.00 0.00 0.00 3.16
2008 3905 0.610174 TAGCTGCCAGTCCACTCAAG 59.390 55.000 0.00 0.00 0.00 3.02
2009 3906 0.321671 GTAGCTGCCAGTCCACTCAA 59.678 55.000 0.00 0.00 0.00 3.02
2010 3907 1.544825 GGTAGCTGCCAGTCCACTCA 61.545 60.000 16.95 0.00 0.00 3.41
2011 3908 1.219393 GGTAGCTGCCAGTCCACTC 59.781 63.158 16.95 0.00 0.00 3.51
2012 3909 2.294078 GGGTAGCTGCCAGTCCACT 61.294 63.158 23.21 0.00 0.00 4.00
2013 3910 2.269241 GGGTAGCTGCCAGTCCAC 59.731 66.667 23.21 0.00 0.00 4.02
2014 3911 3.009115 GGGGTAGCTGCCAGTCCA 61.009 66.667 23.21 0.00 0.00 4.02
2015 3912 3.009115 TGGGGTAGCTGCCAGTCC 61.009 66.667 23.21 14.83 0.00 3.85
2016 3913 2.586792 CTGGGGTAGCTGCCAGTC 59.413 66.667 23.21 11.61 0.00 3.51
2034 3931 2.113139 AACCCGTTGGCTGGACAG 59.887 61.111 0.00 0.00 33.59 3.51
2035 3932 2.203280 CAACCCGTTGGCTGGACA 60.203 61.111 0.00 0.00 36.95 4.02
2036 3933 2.112297 TCAACCCGTTGGCTGGAC 59.888 61.111 7.68 0.00 40.78 4.02
2037 3934 2.112297 GTCAACCCGTTGGCTGGA 59.888 61.111 4.94 0.00 41.62 3.86
2038 3935 2.203280 TGTCAACCCGTTGGCTGG 60.203 61.111 12.94 0.00 44.87 4.85
2039 3936 2.551912 GGTGTCAACCCGTTGGCTG 61.552 63.158 12.94 0.00 44.87 4.85
2040 3937 2.203294 GGTGTCAACCCGTTGGCT 60.203 61.111 12.94 0.00 44.87 4.75
2052 3949 1.813513 CATGTTGAGGACAGGGTGTC 58.186 55.000 0.00 0.00 46.23 3.67
2061 3958 7.686859 GCATATGTTACTAGTCCATGTTGAGGA 60.687 40.741 14.97 0.00 0.00 3.71
2062 3959 6.425114 GCATATGTTACTAGTCCATGTTGAGG 59.575 42.308 14.97 2.37 0.00 3.86
2063 3960 6.986231 TGCATATGTTACTAGTCCATGTTGAG 59.014 38.462 14.97 2.66 0.00 3.02
2064 3961 6.883744 TGCATATGTTACTAGTCCATGTTGA 58.116 36.000 14.97 0.15 0.00 3.18
2065 3962 7.227314 ACATGCATATGTTACTAGTCCATGTTG 59.773 37.037 14.97 13.13 45.01 3.33
2066 3963 7.282585 ACATGCATATGTTACTAGTCCATGTT 58.717 34.615 14.97 3.74 45.01 2.71
2067 3964 6.830912 ACATGCATATGTTACTAGTCCATGT 58.169 36.000 14.97 8.88 45.01 3.21
2085 3982 8.680903 GGAGTAACTTACTAGTAGTAACATGCA 58.319 37.037 17.12 0.00 39.59 3.96
2086 3983 8.134261 GGGAGTAACTTACTAGTAGTAACATGC 58.866 40.741 17.12 12.37 39.59 4.06
2087 3984 8.628280 GGGGAGTAACTTACTAGTAGTAACATG 58.372 40.741 17.12 11.23 39.59 3.21
2088 3985 8.339247 TGGGGAGTAACTTACTAGTAGTAACAT 58.661 37.037 17.12 11.74 39.59 2.71
2089 3986 7.611855 GTGGGGAGTAACTTACTAGTAGTAACA 59.388 40.741 17.12 8.79 39.59 2.41
2090 3987 7.831690 AGTGGGGAGTAACTTACTAGTAGTAAC 59.168 40.741 17.12 9.60 39.59 2.50
2091 3988 7.933223 AGTGGGGAGTAACTTACTAGTAGTAA 58.067 38.462 19.32 19.32 39.59 2.24
2092 3989 7.516450 AGTGGGGAGTAACTTACTAGTAGTA 57.484 40.000 5.90 5.90 39.59 1.82
2093 3990 6.400096 AGTGGGGAGTAACTTACTAGTAGT 57.600 41.667 8.14 8.14 39.59 2.73
2094 3991 8.216423 TCATAGTGGGGAGTAACTTACTAGTAG 58.784 40.741 2.23 0.00 39.59 2.57
2095 3992 7.995488 GTCATAGTGGGGAGTAACTTACTAGTA 59.005 40.741 0.00 0.00 39.59 1.82
2096 3993 6.832900 GTCATAGTGGGGAGTAACTTACTAGT 59.167 42.308 0.00 0.00 39.59 2.57
2097 3994 6.264970 GGTCATAGTGGGGAGTAACTTACTAG 59.735 46.154 1.21 0.00 39.59 2.57
2098 3995 6.131961 GGTCATAGTGGGGAGTAACTTACTA 58.868 44.000 1.21 0.00 39.59 1.82
2099 3996 4.961099 GGTCATAGTGGGGAGTAACTTACT 59.039 45.833 0.76 0.76 42.86 2.24
2100 3997 4.713321 TGGTCATAGTGGGGAGTAACTTAC 59.287 45.833 0.00 0.00 0.00 2.34
2101 3998 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
2102 3999 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
2103 4000 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
2104 4001 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
2105 4002 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
2106 4003 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
2107 4004 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
2108 4005 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
2109 4006 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
2110 4007 1.507140 TTAGGCTGGTCATAGTGGGG 58.493 55.000 0.00 0.00 0.00 4.96
2111 4008 2.238646 TGTTTAGGCTGGTCATAGTGGG 59.761 50.000 0.00 0.00 0.00 4.61
2112 4009 3.627395 TGTTTAGGCTGGTCATAGTGG 57.373 47.619 0.00 0.00 0.00 4.00
2113 4010 5.185454 TGATTGTTTAGGCTGGTCATAGTG 58.815 41.667 0.00 0.00 0.00 2.74
2114 4011 5.431765 CTGATTGTTTAGGCTGGTCATAGT 58.568 41.667 0.00 0.00 0.00 2.12
2115 4012 4.818546 CCTGATTGTTTAGGCTGGTCATAG 59.181 45.833 0.00 0.00 0.00 2.23
2116 4013 4.473196 TCCTGATTGTTTAGGCTGGTCATA 59.527 41.667 0.00 0.00 34.00 2.15
2117 4014 3.266772 TCCTGATTGTTTAGGCTGGTCAT 59.733 43.478 0.00 0.00 34.00 3.06
2118 4015 2.642311 TCCTGATTGTTTAGGCTGGTCA 59.358 45.455 0.00 0.00 34.00 4.02
2119 4016 3.350219 TCCTGATTGTTTAGGCTGGTC 57.650 47.619 0.00 0.00 34.00 4.02
2120 4017 3.806949 TTCCTGATTGTTTAGGCTGGT 57.193 42.857 0.00 0.00 34.00 4.00
2121 4018 3.181483 GCATTCCTGATTGTTTAGGCTGG 60.181 47.826 0.00 0.00 34.00 4.85
2122 4019 3.488047 CGCATTCCTGATTGTTTAGGCTG 60.488 47.826 0.00 0.00 34.00 4.85
2123 4020 2.684881 CGCATTCCTGATTGTTTAGGCT 59.315 45.455 0.00 0.00 34.00 4.58
2124 4021 2.223572 CCGCATTCCTGATTGTTTAGGC 60.224 50.000 0.00 0.00 34.00 3.93
2125 4022 2.223572 GCCGCATTCCTGATTGTTTAGG 60.224 50.000 0.00 0.00 35.34 2.69
2126 4023 2.684881 AGCCGCATTCCTGATTGTTTAG 59.315 45.455 0.00 0.00 0.00 1.85
2130 4027 1.033746 CCAGCCGCATTCCTGATTGT 61.034 55.000 0.00 0.00 0.00 2.71
2144 4041 3.084786 AGCTTTCTTTCATGTACCAGCC 58.915 45.455 0.00 0.00 0.00 4.85
2146 4043 3.755378 AGCAGCTTTCTTTCATGTACCAG 59.245 43.478 0.00 0.00 0.00 4.00
2147 4044 3.754965 AGCAGCTTTCTTTCATGTACCA 58.245 40.909 0.00 0.00 0.00 3.25
2148 4045 6.017852 GGTATAGCAGCTTTCTTTCATGTACC 60.018 42.308 0.00 0.00 0.00 3.34
2166 4066 4.025647 GCGTGAGAAATGAACAGGTATAGC 60.026 45.833 0.00 0.00 0.00 2.97
2167 4067 5.005779 GTGCGTGAGAAATGAACAGGTATAG 59.994 44.000 0.00 0.00 0.00 1.31
2168 4068 4.868171 GTGCGTGAGAAATGAACAGGTATA 59.132 41.667 0.00 0.00 0.00 1.47
2175 4075 4.153117 AGAGATTGTGCGTGAGAAATGAAC 59.847 41.667 0.00 0.00 0.00 3.18
2199 4099 3.006940 TCGCTAGTGGCTTGTAATTTGG 58.993 45.455 2.90 0.00 39.13 3.28
2222 4122 1.303236 TGGTTGATGGCTTGTCGGG 60.303 57.895 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.