>input_sequence_79471
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ATGAGCTGCACAAGGATCAGCGGTGCAGTCATCGTTTTTGCCTTGCTCTTCGCCCCGTTATTGCTCATGCTCTGCCTTCC
CCTTGCCTGCGCTCGCCATGGTGAGTT-------------TCCTCTCCAATCTCCATATATGTTTGCTAGTTTT------
------------------------------------GAGATGCATCCAT----CCATGGATTGATCGATCCGCTTGCTAA
ATCGTTGCACTCCCTGCAGTGGTGGCGCTGGAGGCCAAAGATGGCCTGAACATCGGAGGAGGCCGGCATGTGGATGTGGT
TGGTGATGACGCAGGAAAGGCTGTCCCCGTCTCGAACCACGGCGGCTCACGGCCAGCGAGGACGGTGGAGTTGCCCGCGG
CGAGGAGGCACCGGGTGGACGCGGCGGACGAGTTGCACGACATGCTGAGGAGGGACTACGCGTGGAGGGCGAGGCGCCGC
AAGCCCATCCACAACGACGAGCCACGCGACGATGAGCCCTGA--------------------------------------
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>chr2B_1_TraesCS2B01G348100
GCCGCAAATTAGGGATTTGATGAATTGGGGATATTTTTTTTGACTTTTTACACAAAACACCTACATGCAAGATTGGCCTA
ATTAGAGAAGAGTATGTGGCGGTCAACAAGTGATCAAACCAGGCCTTTATGCACCGCGTACGTCGAATAATGACCTTATT
TTCACGTCAAATCGTATATAGTGATTGTAATGAGCATATTCCTAAGTGCAGTGACCATCGGTGTATTTATCTCTTTTTCC
TTTC-------CAGTGGCGTGCGTGTCTTCGCGTGGGTAGCCAGGACAGCCAATGTTGCCCTGTGTGGG---TGGTGATG
GTTTTAACCTGGTTTTCCATGTATT-ACCAGACAACTCTTTTTTCTTTAATGAACCGAGATCCTTC--------------
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------------------AGGGCCGACTTACAAAAACTTGATAGCTGGGCCGAGTCTGTTCTCTGTGACTATATCTCAAA
GGTATAACATTG--------------------------------------------------------------------
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---------TAAGGACCATCACATACTGAGTTACTGAGTGAGATTATGTCTCTGCTCTTGGATACTTTGGGTTGATACTC
ACCACGCCAGGCCAAAAATGCTAGACATACAAAGACTTACACGCTTTTACACGCTCCTTCCATCTAACAACCAATCACAA
ACCTCTCCCCCCCTGATTTTTAAAGGGTGGGCCGCCCCGCTCACCTATTGACCAATCAAGATTAACCATCCTGTAAAAGC
TTGTAAATCGTTTGTACGTGTAGCATTGCCGACACCAGGCACAACCAGGAGCAGAGCATTAAACAAGTCCTGCGTGGGGG
TTCGTTAAGTAAAACTAGCACGGTGGTACGGTCAGAAGAGATGTTCTCTAGGTATCCTCAGCTAGCTTTGACTGCATGTC
TATCCCTAGACCCCATACTAGCTAGGAAGCCAGCTAGCCTAAAAACACTGGCCACTCACTGATCTCCTTATAAAACCTCA
ACAAACCCCAAACCTGTACCTTCTCTTCCAACTCCTATTGACACACAAGCACATACACACGCAGGAAAAGATTGAACACC
ATGAGCTGCACAAGGATCAGCGGTGCAGTCATCGTTTTTGCCTTGCTCTTCGCCCCGTTATTGCTCATGCTCTGCCTTCC
CCTTGCCTGCGCTCGCCATGGTGAGTT-------------TCCTCTCCAATCTCCATATATGTTTGCTAGTTTT------
------------------------------------GAGATGCATCCAT----CCATGGATTGATCGATCCGCTTGCTAA
ATCGTTGCACTCCCTGCAGTGGTGGCGCTGGAGGCCAAAGATGGCCTGAACATCGGAGGAGGCCGGCATGTGGATGTGGT
TGGTGATGACGCAGGAAAGGCTGTCCCCGTCTCGAACCACGGCGGCTCACGGCCAGCGAGGACGGTGGAGTTGCCCGCGG
CGAGGAGGCACCGGGTGGACGCGGCGGACGAGTTGCACGACATGCTGAGGAGGGACTACGCGTGGAGGGCGAGGCGCCGC
AAGCCCATCCACAACGACGAGCCACGCGACGATGAGCCCTGAGTCTGTCAGACCTTCCCCGCAGCGCAGCTAG-------
--GTACATAGTTACAAGAAGCTTAGCTAGCTA------GATCAGTGTTTTACTACTGCTACCGCTA-----------CTA
GATTTGCAGGCTTGGAGGATACCCAAATATAGCTTAGATGCCCAAATACTATGGAATGATGATGCCCTGGTTGTGGTTGG
CTAGGTATATCATTAGTTGGTCAGCTAGCCTTAATCCAGCATCCAAGATGGACATCAGGTTTAGCCTTGTTTTTTACAAG
AACTGCTGGATAGGAGTTCATGAG--AAAAAAGGGGCAGTTTTGTGCCGGATGTGCAGGCTTGGGGGTACCA-------T
ACATGTAATGTCCTATATATCCACCGGTAATCAG-TTTGGCGGATATCAGTGCCATATGCGTGTC-AAACTTAGTAATAC
TTTGTTGCGTCTTCACATACGGGTTATGGCAGACTGAACCTCGTTCTGGTGATTGTAATAGCTTTGGCTCTTGCTCTGTT
TTCTCCTTCTAACACAATGGGCATTGCTCGCATCACACTACTACATGTCAAAGCCGGGGCTTAACTTGAGTGGACTGGCA
GCTACCCCAGCTGTCCAGCCAACGGGTTGACACCCTGTCCTCAACATGGACTAGTAACATATGCATGTTACTACTAGTAA
GTTACTCCCCACTATGACCAGCCTAAACAATCAGGAATGCGGCTG---GTACATGAAAGAAAGCTGCTATACCTGTTCAT
TTCTCACGCACAATCTCTCCAAATTACAAGCCACTAGCGAACCCGACAAGCCATCAACCACCTGCTATTTGTAAATAAAA
-TAAAAGAGCAGGGCATATGGGGGGAGAAGAGCAAGGAAGG-GGGGAGAAACGATCAACATTTGAATGAATTTAACATTG
GCTGGCTAACACTAGCTCAGGCGCGAGGCCGCCGGCCATGAGCTAGACTCATCAATCAAACAGGAAAAAAATGCTCTCAG
AATTTACAGCAGAGGACCCTGAAACCCCAGCCCCGGTCTCGCCT
>chr2D_1
GCTGCAGATTAGGGATTTGATGAATTGGGGAT-----TTTTGACTTGTTACACAAACACCTCCATGCAAAGATTGGCCTA
ATCAGAGAAAAGTACGTGGCGGTCAACAAGTGATCAAACCAGGCCTCTATGCACTGCATACGTCGAATAATGACCTTATT
TTCACGTCAAATCGTATATAGTGACCCTAATGAGCGTATTCCTAAGTGCAGTGACCATCGGTGTATTTATCTCTTTTTTC
TTTCTAGTGGGCAGTGGCGTGCGTGTCTTCGCGTGGGTAGCCAGGATAGCCAATGTTGCCCTGTGTGGGCCGTGGTGACA
GTTTTAGCCCGGTTTTCCATGTATTAACCAGACAACTCTTTTTTCTTTAATGAACCGAGATCCTTGAGGGCCGGGAAAAT
ATCACATGATAATGTGGATTTAGAATTTGGACCTGAAATTTTTAGTGATTGTACATTCATGTGATGTCAACATACATAAT
TTTTTTTCAGAATTTTTTGAACATTTAAATTTGATTTTTGTTTCAAATGGTATCATGGGAGCATTGGGGAGATGGTATCA
CCTGATACTCTCCCCTTAAGGGCCGACTTAAAAAAACTTGATAGCTGGGCCGAGTCTGTTCTCTGTGACTATATCTCAAA
GGTATAACATTAC-------------------------------------------------------------------
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----------AAGGACCATCAGATACCG--------AGTGAGATTATGTCTCTGCTCTTGGATACTTTGGGTTGATACTC
ACC-----------------------------------------------------------------------------
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-------------------------------ACACCAGGCACAACCAGGAGCAGAGCATTAAACAAGTCCTGCCTGGGGG
CTCGTTAAGTAAAACTAGCACGGTGGTACGGTCAGAAGAGATGTTCTCTAGGTATCCTCAGCTAGCTTTGACTGCATGTC
TATCCCTAGACCCCTTACTAGCAAGCAAGCCAGCTAGCCTAAAAACACTGGCCACT----GATTTCCCTATAAAACCTCA
GCAAACCCCAAACCTGTACCTTCTCTTCCAACTCCTATTGACACACAAACACATACACACGCAGGAAAAGATTGAACACC
ATGAGCTGCACAAGGATCAGTGGTGCAGTCCTCGTTTTTGCCTTGCTCTTCGCCCCGTTATTGCTCACGCTCTGCCTTCC
CCTTGCCTGCGCTCGCCATGGTGAGTT-------------TCCTCTCCAATCTCCATGTATGTTTGTCAGTTTT------
------------------------------------GAGATGCATCCATCCACCCATGGATTGATCGATCGGCTTGCTAA
ATCGTTGCACTCTCTGCAGTGGTGGCGCTGGAGGCCAAAGATGGCCTGAACATTGGAGGGGGCCGGCAGC---AGGTGGT
TGGTGATGACGCAGGAAAGGCTGTCCCCGTCTCGAACGCCGGCGGCTCACGGCCAGTGAGGACGGTGGAGTTGCCCGCGG
CGAGGAGGCACCGGGTGGACGCGGCGGAGGAGTTGCACGACATGCTGAGGAGGGACTACGCGTGGAGGGCGAGGCGCCGC
AAGCCCATCCACAACGACGAGCCTCGCGACGACGAGCCCTAAGTCCGTCAGACTTTCCCCGGAGCGCAGCTAGGTAGGTA
GAGTACATAGTTACAAGAAGCTTAGCTTAGCTAGAGCCGCTCTCTGTTTTACTACTGCTGCTACTACAACTAGTTAGCTA
GATTTGCAGGCTTGCAGGATACCCAAATAT-------------------TATGGAATAACGATGCCCTAGTTGGTAC---
------AGTATATCATTAGCTGGTC-AGCCTTAATCTGGCATCCAAGATGGACATCAGGTTTAGCCCTGTTTTCTGCAAG
GACTGCTGGA-AGGAGTTCGTGCG--AAAAAAGGGGCGGTTTTGTGCCGGATGTGCAGGCCT-GGGGGTATGCTATATCT
ACATGTAATGTCCTATATGTCCACCGGTAATCAGGTTTGCAGAATATCAGCGTTCTATGTGTGTCAAAACTTAT------
TTTGTTGCTTGTTCACATCCGGGTCATGGCACACTGAAC-TCGTTCTGGTGAGTGTAATAGCTTCGACTCTTGCTCTGTT
TTGGGCAT-------------CATTGCTCGCGTCGCACTACATGTATGTA------------------------------
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-----------------------TAAGCAAACAGGAATGCTGGCAGCAGTACATGAAAGAAAGCT---ATACCTCTTCAT
TTCTCACGCACAATCTCTGCAAATTACAAGCCACTAGCGAATCCGACAGGCCATCAACCTCCTGCTATTTGTAAATAAAA
ATAAAAGAGCAGGGCATATGGGGGGAGAAGAGCAAGGAAGGGGGGGAGAAACGATCAACATTTGAATGAATTTAACATTG
GCTGGCTAACACTAGCTCAGGCGCGAGGCCGCCGGCCATGAGCTAGACTCATCAATCAAACAGGAAAAAAATGCTCTCAG
AATTTACAGCAGAGGACCCTGTAACCCCAGCCCCGGTCTCGCCT
>chr2A_1
GCCGCGGATTAGGGATTTGATGAATTGGGGAT-----TTTTGACTTTTTACACAAAACACCTTCATGCAAGATTGGCCTG
ATCAGAGAAGAGTATGTGACGGTCAACAAGTGGTCAAACTAGGCCTCTATGCACCGCATACATCGAATAATGACCTT-TT
TTCACGTCAAATCGTATATAGTGACCATAATTAGCGTATTCCCAAGTGCATGGACCATCGGTGTATTTATCTCTTTTTCC
TTTCAAGTGGGCAGTGGCGTGCGTGTCTTCGCGTGGGTAGCTAGGACAACCAATGTTGCCCTGTGTGGGCCGTGGTGACG
GTTTTAACCCAATTTTCCATGTATTAACCAAACAAAACTTTTTTCTTTAATGAATTGAGATCCTTC--------------
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------------------AAGGCCGACTTAGAAAAACTTGATAGCTGGGCTGAGTCTGTTTTGTGTGACTATATCTCAGA
GGTTAATATCGTAAGAGCATCTCCACTAGTCCCTCCAAGAGGCCCCCCAAGATCACTTTTTCACCGCTGACAGTGAAAAA
AGTCCACACTCACGCCTCTAGGATCACTTTTTTCACCGGATTCGTGAAATTTTAGCGCCGGCATTCCCACCCCAAACCCA
CCCCCTGTGGGCATCTGGGGGCGCCGACGATTTGTTTTTGCATGCAAAGGCCCACATGCAGCCTCGCAGCACCCTCTCTC
CTTTCACTTTTCATCTGATACATGCAGGAGAGCTCTCTCTCTCTCTCCTTGTCTTTTCTTCCAACAACCACGCACCCGCG
CCGCTCGCCGTCTGCTTGCCGCCGTGCTCGCCGTCGGGGCCGCCCTACGTGCATGCTCGCGTGCGGGTCCGGAGCCGCGG
CAGCTCGTCGCTAACGCCGCGGGAGCTCGTCCGCCGGTGTGTGGCTGTGGCATGGCCGGGCTGGAGCTCGCTGCACGCGG
ACGCCGGCTCGCTGCCTGCGCGCCTCCGCCACCGCACGGTCGCGGTTGCCCCTCGTCGCGGTCGCGCTGCTTCAACCTCC
GCCATCGAGGCCGAGCTGGAGGCCAGGGAGCGGGCGGGACGGCCTCCTGTACGCGCGGTGGCCGGGCGAAGCAGCGCGGG
CGCGACCGTGGACGCCCGCCTGGACGACGCGGCCGAGACGATGTGGACAGAGCTCGCTGGAGCGCGCGACGGCCGGGCGG
AGTGCGCGCCAGCCGGGACGACGACGTCCGCGACCGCTGCGCCTGGCCCGCCCTAGGCCGCGCCTGAGCCAGACCTTGCG
GCACCCCGCGCCCGCCCGCACTGCTGCCGCTGCTCATCCCTGGCCGGCGCTTCAGACGCCATGGCCGGAGCAGCGCTCCC
GCGCACGGTCGTGCGCCCCTGGCCGCGCCCCCTGCCCGCTTGGTCGTGCCCCTACGAGCACTTGCGAGCTGCTGCTGCCT
CCTGTGCGCCGCGCCTCGCCTCTGGCCGCGCCCCCCGCCCGCTTGGTCGTGCCCCCGCGAGCACTTTGCTGCCTCCTGCG
CGCCCCGCCTCGCCTCTGGCTGTGCCCCCTGCCCGCTTCGTCGTGCCCCCGCGAGCACTTGCGAGCTGCTGCTGCTTCCT
GCGCGCCCCGCCTCGCCTCTGGCCGCGGCCCTGCCTGCTGCTTGCGTCGCTGCTGCTGCTGCCTCGCCCTGCCTCACCTC
TGGCCGCGCCCCCTGCCCGCTTGGCCGCCTCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGAGTGGATA
ATATTTCACCCCCAGAGTAAATGTTTCGCCAGAACCCCCCGAAAGGGCGAAAAAAATGCCTCTTGAAGGCTCAACGGCTG
GAGATGCTCTAAGGACCATCACATACTG--------AGTGAGATTATGTCTCTGCTCTTGGATACTTTGGGTTGAT----
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-----------------------------------CAGGCACAAGTAGGAGCAGAGCATTAAACAAGTCCTGCCTGGGGG
TTCGTTAAGTAAAATTAA-------------------------------------CCTCAGCTAGCTTTGACTGCATGTC
TATCCCTAGACT---------CTAGCAAGCCAGCCAGCCTAAAAACACTGGCCACT----GATTTCCCTATAAAACCTCA
ACAAAACCCAACCCTGTACCTTCTCTTC-AACTCCTATTGACACACGAACACACATA---GCAGGAAAAGATAGAACACC
ATGAGCTGCACCCGGATCAGTGGCGCAGTCCTCGTTTTTGCCTTGCTCTTCGCCTCGTTATTGCTCACGCTCTACCTTCC
CGCTGCTTGTGCTCGCCATGGTGAGTTCCTTACTGTCTTCTCTTCACCCATCGACATATCTATATCTGTATATATTTTCC
TCCTTTGTTACTTTGTTGGCTTTGTTGAGATGGTAAGATTTGCATACAT----CCCTTGTTAAATCGTGGCGCTACTGTA
----TTACTATCTCTGCAGTGGTGCTGCTAGAGGCCCAAGATGGCCTGAACATCGGAGGAGGCCGGCAGC---AGGTGGT
TGGTGATGACGCAGGAAAGGCCGTCCCCGTCTCGAACGCCGGCGGCTCACGGCCAGTGAGGACGGTGGAGTTGCCCGCGG
CGAGGAGGCACCGGGTGGACGCGGCGGACGAGTTGCACGACATGCTGAGGAGGGACTACGCGTGGAGGGCGAGGCGCCGC
AAGCCCATTCACAACGACGAGCCTCGCGACGACAAGCCCTAAGTCCGTCAGACCTTCCCCGCAGCGCAGC----TAGGTA
GAATACATAGTTACAAGAAGCTTAGCTTAGCCAGAGCCGCTCTCTGCTCTACTACTGCTACTACTACAACTAGTCAGCTA
GATTTGCAGGCTTGCAGGATACCCAAATACTCCCTTTGTCCCATAATATAAGAACGTCAAGTTGGTAC------TAC---
------AGTGTATCATTAGCTGGTC-AGCCTTAATCTGGCATCCAAGATGGACATCAGGTTTAGCCCTGTTTTCTGCAAG
GACTACTGGC-AGGAGTTCGTGCG--GAAAAAGGGGCAGTTTTGTGCCGGATGTGCAGGCTTGGGGGGTATGCTATATCT
ACATGTAATGTCCTATATGTCCACCGGTAATCAGGTTTGCAGAATATCAGCGTTCTATGTGTGCC-AAACTTAT------
TTTGTTGCTTGTTCACATTCGGGTCATGGCAAACTGAAC-TCGTTCTGGTGAGTGTAATAGCTTCGACTCTTGCTCTGTT
TTGGGCAT-------------CATTGCTCGTGTCGCACTACATGTATGTA------------------------------
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-----------------------TAAGCAATCAGGAATGCTGGCAGTAGTACATGAAAGAAAGCT---ATACCTCTTCAT
TTCTCACTCACAATCTCTGCAAATTACAAGCCACTGGCGAATCCGACAAGCCATCAACCTCCTGCTATTTGTAAATAAAA
ATAAAAGAGCAGGGCATGTGGGGGGAGAAGAGCAAGGAAGGGG---AGAAACGATCAACATTTGAATGAATTTAACATGG
GCTGGCTAACACTAGCTCAGGCGCGAGGCCGCCGGCCATGAGCTAGACTCATCAGACAGTTA--AAAAAAATGCTCTCAG
AATTTACAGCAGAGGACCCTGTAACCCCAGCCCCGGTCTCGCCT
>chr2B_1192
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----------TCTCTGCAGTGGCGGTGCTCGGGGCAAAAGATGGCCTGAATCTCGGAGGCAGCCGGCAGC---ATGTGGT
TGGTGATGACGCAGGAAAGGCTGTCCCTGT---------CGGCGGCTCACGGCCAGTTAGGACGGTGGAGATGCGCGCGG
CGAGGAGGCACCGGCGGGACGCGGCCGACGAGATGCACGACATGCTGAGGAAGGACTACTCGTATAGGGCGAGGGGCAAA
AAGCCCATCCACAACGACGAGCCACTCGAGGATGAACCCTAAATCAGACC--------------CGTAGCTAG-------
--GTACATAGTTAT-AGAAACTTAGC-TAGCTAGAGCCGCTCTCTGATTTACTACTACTG---------CTAGTTAGATA
GATTTGCAGGCTTGCAGGATAC----ATATAGCTTAGGTACCCAAATATTATGGAACAATAATGCCTG------GGTTGG
CTAGGTAGTTTATTATTAGCTGGTC-AACCTTAATATAGCATCCAAGCTGGCCATCACGTTTAGTCCTGATTT--GCAAG
AACTACTGGT-AGGAGAAGTTCATGCGAAGAAGGGGCAGTTTTGTGCCTGATGTGCACGCTTGGGGG-------------
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>SNPs
------S-------------------------SSSSS-------------------------S-----------------
--S-------------------------------------------S----------S----------------------
------------------------SSS--------S--------------------------------------------
------------------------------------------------------------------------------S-
---------S----------------------------------------------------------------------
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------------------------------S-------------------------------------------------
-----------S--------------------------------------------------------------------
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----------------------------SSSSSSSS--------------------------------------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------S------
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--------------S----------S------------------------------SSSS---S---S------------
------------------------------------------------S-------------------------------
--------------------S---------S------------------------------------S------------
------------------------------------------------------------------SS------------
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------------S-------------------------------------------------------SSSSS-------
-------------------------------------SS-----------------S-----------------------
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----------------------------------------S----S----------------------------------
---------------------------SSSSS-------S--SS-----------------SS-----------------
--------------S----------------------S-S--------S--------S----------S----S------
-------SS-S----S-S-S-SSS-S----------S-----------------------------S------S-S----
----------S--------S-----------------------------------------------SSSSS--------
------------------S--------------------SS-S-------S-SSS----S-------------SSSSSSS
--------S-S-------S-----S------S-------S------------S-----------S-S-------------
--SSS-S-SSSSSSSSSSSSS----------S--S------SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS---S-------------S-SSS--------------------SSS------S-----
------------------S----------------------S-----------------S--------------------
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---------------------S----------------------
>forward_2327
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-------------------------------------------------------------------TGGGTTGATACTC
ACCACGC-------------------------------------------------------------------------
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>reverse_3906
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-----------------------------------------------------------------TTGAGTGGACTGGCA
GCTAC---------------------------------------------------------------------------
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