Multiple sequence alignment - TraesCS2B01G344300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G344300 chr2B 100.000 2710 0 0 1 2710 491021654 491024363 0.000000e+00 5005
1 TraesCS2B01G344300 chr2D 93.363 2275 118 18 462 2710 419024312 419026579 0.000000e+00 3334
2 TraesCS2B01G344300 chr2D 89.218 371 26 10 1 362 419023593 419023958 4.110000e-123 451
3 TraesCS2B01G344300 chr2A 91.023 1515 101 16 462 1958 571150978 571149481 0.000000e+00 2012
4 TraesCS2B01G344300 chr2A 92.904 761 52 2 1946 2706 571149466 571148708 0.000000e+00 1105
5 TraesCS2B01G344300 chr2A 89.459 370 25 10 1 362 571151514 571151151 3.180000e-124 455


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G344300 chr2B 491021654 491024363 2709 False 5005.000000 5005 100.000000 1 2710 1 chr2B.!!$F1 2709
1 TraesCS2B01G344300 chr2D 419023593 419026579 2986 False 1892.500000 3334 91.290500 1 2710 2 chr2D.!!$F1 2709
2 TraesCS2B01G344300 chr2A 571148708 571151514 2806 True 1190.666667 2012 91.128667 1 2706 3 chr2A.!!$R1 2705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 904 0.319813 GAAAACTTGCGCAGGCCATT 60.32 50.0 20.58 11.86 38.85 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2603 2953 0.324645 TGGTAGGAGGGACCGTTACC 60.325 60.0 7.78 7.78 44.74 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.272244 ACCCAAAGAAAACCATTACAAAAGAG 58.728 34.615 0.00 0.00 0.00 2.85
80 81 9.817809 AGTGATAACTATGTTACAGTACCAATG 57.182 33.333 0.00 0.00 0.00 2.82
111 112 3.357203 ACAGTAGCGAGAGGAGAAATGA 58.643 45.455 0.00 0.00 0.00 2.57
138 139 1.076923 AGGGGAGCGTACATCTCGT 60.077 57.895 0.00 0.00 0.00 4.18
139 140 1.102222 AGGGGAGCGTACATCTCGTC 61.102 60.000 0.00 0.00 0.00 4.20
140 141 1.381928 GGGGAGCGTACATCTCGTCA 61.382 60.000 0.00 0.00 0.00 4.35
159 160 5.938710 TCGTCATAAGCGAGATATAGTTCCT 59.061 40.000 0.00 0.00 34.11 3.36
197 206 3.279504 AAGAGCTCTTGCCAGCCCC 62.280 63.158 27.96 0.00 40.65 5.80
198 207 4.039092 GAGCTCTTGCCAGCCCCA 62.039 66.667 6.43 0.00 40.65 4.96
199 208 3.574074 GAGCTCTTGCCAGCCCCAA 62.574 63.158 6.43 0.00 40.65 4.12
206 215 2.919328 GCCAGCCCCAACAAGCTT 60.919 61.111 0.00 0.00 37.18 3.74
207 216 2.510551 GCCAGCCCCAACAAGCTTT 61.511 57.895 0.00 0.00 37.18 3.51
226 235 8.655970 CAAGCTTTAAATTGGCCTAATTTGTAC 58.344 33.333 24.34 15.68 45.90 2.90
249 258 9.374838 GTACAATCTCCTTAAAAATAGAACCGA 57.625 33.333 0.00 0.00 0.00 4.69
264 273 1.746615 CCGAAGGCCCATGACACTG 60.747 63.158 0.00 0.00 46.14 3.66
294 304 9.750125 GAAGGTAAAATGAGAAAATGTCACTTT 57.250 29.630 0.00 0.00 29.31 2.66
296 306 9.136323 AGGTAAAATGAGAAAATGTCACTTTCT 57.864 29.630 8.96 8.96 44.02 2.52
344 354 2.439135 AGCCCATTTTCTTTTTGCAGGT 59.561 40.909 0.00 0.00 0.00 4.00
352 491 7.306341 CCATTTTCTTTTTGCAGGTTAACGTAC 60.306 37.037 0.00 0.00 0.00 3.67
366 505 9.206870 CAGGTTAACGTACTAAAGTCCAAATTA 57.793 33.333 0.00 0.00 0.00 1.40
397 536 7.559170 ACTTCTGATTTGCTGCTAATTATTCCT 59.441 33.333 10.48 0.00 0.00 3.36
398 537 7.886629 TCTGATTTGCTGCTAATTATTCCTT 57.113 32.000 10.48 0.00 0.00 3.36
399 538 8.297470 TCTGATTTGCTGCTAATTATTCCTTT 57.703 30.769 10.48 0.00 0.00 3.11
400 539 8.752187 TCTGATTTGCTGCTAATTATTCCTTTT 58.248 29.630 10.48 0.00 0.00 2.27
401 540 9.374838 CTGATTTGCTGCTAATTATTCCTTTTT 57.625 29.630 10.48 0.00 0.00 1.94
416 555 2.652313 TTTTTGCGGGTATGCTGCT 58.348 47.368 0.00 0.00 35.36 4.24
417 556 1.827681 TTTTTGCGGGTATGCTGCTA 58.172 45.000 0.00 0.00 35.36 3.49
418 557 1.827681 TTTTGCGGGTATGCTGCTAA 58.172 45.000 0.00 0.00 35.36 3.09
419 558 2.051334 TTTGCGGGTATGCTGCTAAT 57.949 45.000 0.00 0.00 35.36 1.73
420 559 2.051334 TTGCGGGTATGCTGCTAATT 57.949 45.000 0.00 0.00 35.36 1.40
421 560 2.920724 TGCGGGTATGCTGCTAATTA 57.079 45.000 0.00 0.00 35.36 1.40
422 561 3.417069 TGCGGGTATGCTGCTAATTAT 57.583 42.857 0.00 0.00 35.36 1.28
423 562 3.750371 TGCGGGTATGCTGCTAATTATT 58.250 40.909 0.00 0.00 35.36 1.40
424 563 3.751175 TGCGGGTATGCTGCTAATTATTC 59.249 43.478 0.00 0.00 35.36 1.75
425 564 3.127030 GCGGGTATGCTGCTAATTATTCC 59.873 47.826 0.00 0.00 0.00 3.01
433 572 7.928307 ATGCTGCTAATTATTCCGTAATGAT 57.072 32.000 0.00 0.00 33.32 2.45
494 788 7.656137 ACCAAATTTAGCTACAGTATATCGGTG 59.344 37.037 0.00 0.00 0.00 4.94
496 790 8.700644 CAAATTTAGCTACAGTATATCGGTGTC 58.299 37.037 0.00 0.00 0.00 3.67
499 793 8.859236 TTTAGCTACAGTATATCGGTGTCTAT 57.141 34.615 0.00 0.00 0.00 1.98
500 794 6.988622 AGCTACAGTATATCGGTGTCTATC 57.011 41.667 0.00 0.00 0.00 2.08
556 850 2.678336 GCTCCTTGGTTGCACATAGTAC 59.322 50.000 0.00 0.00 0.00 2.73
594 889 9.558396 AATTGCATTGTTTCATCTAAAGGAAAA 57.442 25.926 0.00 0.00 36.97 2.29
595 890 7.945033 TGCATTGTTTCATCTAAAGGAAAAC 57.055 32.000 0.00 0.00 36.97 2.43
597 892 8.203485 TGCATTGTTTCATCTAAAGGAAAACTT 58.797 29.630 0.00 0.00 36.97 2.66
598 893 8.490355 GCATTGTTTCATCTAAAGGAAAACTTG 58.510 33.333 0.00 0.00 36.97 3.16
599 894 8.490355 CATTGTTTCATCTAAAGGAAAACTTGC 58.510 33.333 0.00 0.00 36.97 4.01
609 904 0.319813 GAAAACTTGCGCAGGCCATT 60.320 50.000 20.58 11.86 38.85 3.16
611 906 0.600782 AAACTTGCGCAGGCCATTTG 60.601 50.000 20.58 0.00 38.85 2.32
612 907 2.812178 CTTGCGCAGGCCATTTGC 60.812 61.111 11.31 5.23 38.85 3.68
613 908 3.291101 CTTGCGCAGGCCATTTGCT 62.291 57.895 11.31 0.00 39.38 3.91
638 933 7.556844 TCACCTTATTTTAGCAACACCAAAAA 58.443 30.769 0.00 0.00 0.00 1.94
658 953 9.977762 CCAAAAATTAGCTTTAATTTCTCATGC 57.022 29.630 7.49 0.00 38.33 4.06
668 963 7.322222 GCTTTAATTTCTCATGCGCTATAGTTG 59.678 37.037 9.73 0.00 0.00 3.16
669 964 5.679734 AATTTCTCATGCGCTATAGTTGG 57.320 39.130 9.73 0.00 0.00 3.77
703 1008 3.241530 AGCGGTCTCAAGTGGCCA 61.242 61.111 0.00 0.00 0.00 5.36
736 1041 1.256812 CCACTTCACATGAAACCCCC 58.743 55.000 0.00 0.00 33.07 5.40
775 1080 1.033746 AAGCACCATTCCCATGCGAG 61.034 55.000 0.00 0.00 44.25 5.03
806 1111 2.745884 CGCAATCCCAACGCTCCA 60.746 61.111 0.00 0.00 0.00 3.86
849 1154 3.918220 CGCCGCTCTTCACGCATC 61.918 66.667 0.00 0.00 0.00 3.91
851 1156 1.226974 GCCGCTCTTCACGCATCTA 60.227 57.895 0.00 0.00 0.00 1.98
865 1178 2.726760 CGCATCTATCTAGCAACGTTCC 59.273 50.000 0.00 0.00 0.00 3.62
917 1236 3.585990 GCCATGCATCCCCGTTCG 61.586 66.667 0.00 0.00 0.00 3.95
1026 1345 2.124860 ATGGCGGCTTCGGTTACC 60.125 61.111 11.43 0.00 0.00 2.85
1298 1617 2.736995 CGTGAACATGTCCCGCGT 60.737 61.111 19.58 0.00 0.00 6.01
1323 1642 3.393970 CTGCCTTCCCTCTGCCGA 61.394 66.667 0.00 0.00 0.00 5.54
1330 1649 1.667154 TTCCCTCTGCCGACTCGATG 61.667 60.000 0.00 0.00 0.00 3.84
1341 1660 3.606662 CTCGATGTCCCCGCCGAT 61.607 66.667 0.00 0.00 0.00 4.18
1389 1708 2.035193 TCAGCGCTGAATACTCTCCATC 59.965 50.000 36.62 0.00 36.53 3.51
1403 1722 0.389391 TCCATCCGCGATCTCTTTCC 59.611 55.000 8.23 0.00 0.00 3.13
1429 1748 0.323360 TGATTTTCTTCGGCCAGGGG 60.323 55.000 2.24 0.00 0.00 4.79
1430 1749 0.323451 GATTTTCTTCGGCCAGGGGT 60.323 55.000 2.24 0.00 0.00 4.95
1438 1757 4.832608 GGCCAGGGGTTCGCTACG 62.833 72.222 0.00 0.00 0.00 3.51
1447 1771 2.610232 GGGGTTCGCTACGTACTGAAAA 60.610 50.000 6.37 0.00 0.00 2.29
1448 1772 2.409715 GGGTTCGCTACGTACTGAAAAC 59.590 50.000 6.37 3.95 0.00 2.43
1449 1773 2.409715 GGTTCGCTACGTACTGAAAACC 59.590 50.000 6.37 5.84 0.00 3.27
1498 1822 0.251634 CTCCTTCCAGAGGGACAAGC 59.748 60.000 0.00 0.00 44.89 4.01
1505 1829 2.432628 GAGGGACAAGCACCGTCG 60.433 66.667 0.00 0.00 33.70 5.12
1593 1917 1.250328 CATGCCACCACTGACAACAT 58.750 50.000 0.00 0.00 0.00 2.71
1710 2034 4.072839 GGCAACAGTTTTAGGCTTCTAGT 58.927 43.478 0.00 0.00 0.00 2.57
1725 2049 5.062809 GGCTTCTAGTGTTCTGAAAAGATCG 59.937 44.000 0.00 0.00 0.00 3.69
1777 2101 6.771749 TCCTAGAGAACTTAGTTATTCCCTCG 59.228 42.308 0.00 0.00 0.00 4.63
1838 2162 5.294552 GTGGTTGAAGGAGTAATATGCTCAC 59.705 44.000 9.05 0.00 34.83 3.51
1935 2259 0.884704 TCTCGTTTCAGCCAAGCACC 60.885 55.000 0.00 0.00 0.00 5.01
1941 2265 3.678806 CGTTTCAGCCAAGCACCTATCTA 60.679 47.826 0.00 0.00 0.00 1.98
2157 2507 5.853936 TGCTACATTCACAAACTCTGTAGT 58.146 37.500 9.11 0.00 40.74 2.73
2170 2520 3.942748 ACTCTGTAGTTTTTGGTTTCGCA 59.057 39.130 0.00 0.00 29.00 5.10
2220 2570 4.158579 TGGCTGGAATATCGAGTATAGCAG 59.841 45.833 10.08 0.00 0.00 4.24
2239 2589 2.352651 CAGTATGTCCCACAGAAATGCG 59.647 50.000 0.00 0.00 30.43 4.73
2242 2592 2.093306 TGTCCCACAGAAATGCGTAG 57.907 50.000 0.00 0.00 0.00 3.51
2287 2637 2.124942 TGCGCATATTGCCACCGA 60.125 55.556 5.66 0.00 41.12 4.69
2296 2646 0.327924 ATTGCCACCGATCCAAGACA 59.672 50.000 0.00 0.00 0.00 3.41
2317 2667 1.407979 CCTCCAAAATCAGCATCTGCC 59.592 52.381 0.00 0.00 43.38 4.85
2380 2730 1.651987 CACCAGTTATGCCTACACCG 58.348 55.000 0.00 0.00 0.00 4.94
2391 2741 1.226974 CTACACCGGATGCACCTCG 60.227 63.158 9.46 0.00 36.31 4.63
2589 2939 1.951209 TCTGACAGCCCCACAAGATA 58.049 50.000 0.00 0.00 0.00 1.98
2603 2953 2.230025 ACAAGATATCGAGCGATCCCTG 59.770 50.000 8.84 5.66 36.17 4.45
2607 2957 2.281539 TATCGAGCGATCCCTGGTAA 57.718 50.000 8.84 0.00 36.17 2.85
2620 2970 1.109609 CTGGTAACGGTCCCTCCTAC 58.890 60.000 0.00 0.00 42.51 3.18
2664 3014 0.892358 ACAGCAGTGTCCAGGCAATG 60.892 55.000 6.88 6.88 37.49 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 0.169672 TCGCTACTGTACTTGTCCGC 59.830 55.000 0.00 0.10 0.00 5.54
111 112 3.854669 CGCTCCCCTCGGCTGAAT 61.855 66.667 0.00 0.00 0.00 2.57
138 139 6.071896 CCACAGGAACTATATCTCGCTTATGA 60.072 42.308 0.00 0.00 36.02 2.15
139 140 6.071896 TCCACAGGAACTATATCTCGCTTATG 60.072 42.308 0.00 0.00 36.02 1.90
140 141 6.010850 TCCACAGGAACTATATCTCGCTTAT 58.989 40.000 0.00 0.00 36.02 1.73
197 206 7.671495 AATTAGGCCAATTTAAAGCTTGTTG 57.329 32.000 5.01 3.56 32.74 3.33
198 207 7.719193 ACAAATTAGGCCAATTTAAAGCTTGTT 59.281 29.630 19.11 0.00 43.51 2.83
199 208 7.223584 ACAAATTAGGCCAATTTAAAGCTTGT 58.776 30.769 19.11 12.41 43.51 3.16
207 216 8.691797 GGAGATTGTACAAATTAGGCCAATTTA 58.308 33.333 13.23 9.12 43.51 1.40
226 235 8.398665 CCTTCGGTTCTATTTTTAAGGAGATTG 58.601 37.037 0.00 0.00 35.14 2.67
240 249 1.141053 GTCATGGGCCTTCGGTTCTAT 59.859 52.381 4.53 0.00 0.00 1.98
241 250 0.539986 GTCATGGGCCTTCGGTTCTA 59.460 55.000 4.53 0.00 0.00 2.10
242 251 1.299976 GTCATGGGCCTTCGGTTCT 59.700 57.895 4.53 0.00 0.00 3.01
246 255 1.746615 CAGTGTCATGGGCCTTCGG 60.747 63.158 4.53 0.00 0.00 4.30
249 258 2.036256 GGCAGTGTCATGGGCCTT 59.964 61.111 4.53 0.00 43.09 4.35
264 273 4.776795 TTTTCTCATTTTACCTTCCGGC 57.223 40.909 0.00 0.00 0.00 6.13
294 304 6.127366 GGTTCTCATGGGCATGAAATAAAAGA 60.127 38.462 0.00 0.00 46.10 2.52
296 306 5.104982 GGGTTCTCATGGGCATGAAATAAAA 60.105 40.000 0.00 0.00 46.10 1.52
315 325 3.769739 AAGAAAATGGGCTTTGGGTTC 57.230 42.857 0.00 0.00 0.00 3.62
366 505 4.500499 AGCAGCAAATCAGAAGTATCCT 57.500 40.909 0.00 0.00 0.00 3.24
375 514 8.937634 AAAAGGAATAATTAGCAGCAAATCAG 57.062 30.769 0.00 0.00 0.00 2.90
398 537 1.827681 TAGCAGCATACCCGCAAAAA 58.172 45.000 0.00 0.00 0.00 1.94
399 538 1.827681 TTAGCAGCATACCCGCAAAA 58.172 45.000 0.00 0.00 0.00 2.44
400 539 2.051334 ATTAGCAGCATACCCGCAAA 57.949 45.000 0.00 0.00 0.00 3.68
401 540 2.051334 AATTAGCAGCATACCCGCAA 57.949 45.000 0.00 0.00 0.00 4.85
402 541 2.920724 TAATTAGCAGCATACCCGCA 57.079 45.000 0.00 0.00 0.00 5.69
403 542 3.127030 GGAATAATTAGCAGCATACCCGC 59.873 47.826 0.00 0.00 0.00 6.13
404 543 3.370978 CGGAATAATTAGCAGCATACCCG 59.629 47.826 0.00 0.00 0.00 5.28
405 544 4.324267 ACGGAATAATTAGCAGCATACCC 58.676 43.478 0.00 0.00 0.00 3.69
406 545 7.333423 TCATTACGGAATAATTAGCAGCATACC 59.667 37.037 0.00 0.00 30.54 2.73
407 546 8.251750 TCATTACGGAATAATTAGCAGCATAC 57.748 34.615 0.00 0.00 30.54 2.39
409 548 7.928307 ATCATTACGGAATAATTAGCAGCAT 57.072 32.000 0.00 0.00 30.54 3.79
410 549 8.882736 CATATCATTACGGAATAATTAGCAGCA 58.117 33.333 0.00 0.00 30.54 4.41
411 550 8.883731 ACATATCATTACGGAATAATTAGCAGC 58.116 33.333 0.00 0.00 30.54 5.25
496 790 7.657354 TCCTCATCACAATTTTGGTATCGATAG 59.343 37.037 5.09 0.00 0.00 2.08
499 793 5.739959 TCCTCATCACAATTTTGGTATCGA 58.260 37.500 0.00 0.00 0.00 3.59
500 794 6.624352 ATCCTCATCACAATTTTGGTATCG 57.376 37.500 0.00 0.00 0.00 2.92
504 798 6.197168 ACCATATCCTCATCACAATTTTGGT 58.803 36.000 0.00 0.00 0.00 3.67
575 869 6.695278 CGCAAGTTTTCCTTTAGATGAAACAA 59.305 34.615 0.00 0.00 30.64 2.83
580 874 3.818210 TGCGCAAGTTTTCCTTTAGATGA 59.182 39.130 8.16 0.00 41.68 2.92
594 889 2.652530 CAAATGGCCTGCGCAAGT 59.347 55.556 13.05 0.00 41.68 3.16
595 890 2.812178 GCAAATGGCCTGCGCAAG 60.812 61.111 13.05 6.59 36.38 4.01
597 892 3.751246 GAGCAAATGGCCTGCGCA 61.751 61.111 10.98 10.98 46.50 6.09
598 893 3.751246 TGAGCAAATGGCCTGCGC 61.751 61.111 11.54 11.54 46.50 6.09
599 894 2.180017 GTGAGCAAATGGCCTGCG 59.820 61.111 3.32 0.00 46.50 5.18
611 906 4.217550 TGGTGTTGCTAAAATAAGGTGAGC 59.782 41.667 0.00 0.00 0.00 4.26
612 907 5.957842 TGGTGTTGCTAAAATAAGGTGAG 57.042 39.130 0.00 0.00 0.00 3.51
613 908 6.716934 TTTGGTGTTGCTAAAATAAGGTGA 57.283 33.333 0.00 0.00 0.00 4.02
638 933 6.382869 AGCGCATGAGAAATTAAAGCTAAT 57.617 33.333 11.47 0.00 0.00 1.73
641 936 6.708054 ACTATAGCGCATGAGAAATTAAAGCT 59.292 34.615 11.47 0.00 36.36 3.74
658 953 5.692204 CAGAATGTCCTAACCAACTATAGCG 59.308 44.000 0.00 0.00 0.00 4.26
668 963 2.633488 GCTGACCAGAATGTCCTAACC 58.367 52.381 0.47 0.00 34.25 2.85
669 964 2.271800 CGCTGACCAGAATGTCCTAAC 58.728 52.381 0.47 0.00 34.25 2.34
703 1008 4.593206 TGTGAAGTGGGATTGACTCTTACT 59.407 41.667 0.00 0.00 0.00 2.24
736 1041 3.120321 TGTACTGCCTTGTTGTAGGTG 57.880 47.619 0.00 0.00 37.63 4.00
806 1111 2.818751 TGGGGAGTTTTGTGTGAGTT 57.181 45.000 0.00 0.00 0.00 3.01
835 1140 2.414058 AGATAGATGCGTGAAGAGCG 57.586 50.000 0.00 0.00 37.44 5.03
849 1154 4.563184 GTGAAGTGGAACGTTGCTAGATAG 59.437 45.833 20.82 0.00 45.86 2.08
851 1156 3.326747 GTGAAGTGGAACGTTGCTAGAT 58.673 45.455 20.82 4.64 45.86 1.98
865 1178 0.663568 GACGTGGTCTCCGTGAAGTG 60.664 60.000 0.00 0.00 38.92 3.16
917 1236 3.802685 GGTGTGGATTTATAGCGTCTGAC 59.197 47.826 0.00 0.00 0.00 3.51
1298 1617 4.704833 GGGAAGGCAGCAGCACGA 62.705 66.667 2.65 0.00 44.61 4.35
1354 1673 1.571919 CGCTGAGTTATGGTACCTGC 58.428 55.000 14.36 0.56 0.00 4.85
1403 1722 2.345341 GGCCGAAGAAAATCATTTTGCG 59.655 45.455 0.00 1.65 31.94 4.85
1429 1748 2.409715 GGGTTTTCAGTACGTAGCGAAC 59.590 50.000 0.00 0.00 0.00 3.95
1430 1749 2.297033 AGGGTTTTCAGTACGTAGCGAA 59.703 45.455 0.00 0.00 0.00 4.70
1438 1757 6.877611 TGATTCAAAGAGGGTTTTCAGTAC 57.122 37.500 0.00 0.00 0.00 2.73
1447 1771 6.784031 AGACAGTTATTGATTCAAAGAGGGT 58.216 36.000 2.68 0.17 0.00 4.34
1448 1772 7.391554 TCAAGACAGTTATTGATTCAAAGAGGG 59.608 37.037 2.68 0.00 30.67 4.30
1449 1773 8.327941 TCAAGACAGTTATTGATTCAAAGAGG 57.672 34.615 2.68 0.00 30.67 3.69
1489 1813 4.681978 GCGACGGTGCTTGTCCCT 62.682 66.667 0.00 0.00 32.68 4.20
1574 1898 1.200716 GATGTTGTCAGTGGTGGCATG 59.799 52.381 0.00 0.00 38.36 4.06
1710 2034 6.576662 AGTCTAGACGATCTTTTCAGAACA 57.423 37.500 17.07 0.00 36.20 3.18
1725 2049 6.683715 ACTCTAGTTTGCAGAAAGTCTAGAC 58.316 40.000 15.41 15.41 33.56 2.59
1777 2101 6.578919 GCTGTTACAGATGCTAAGAAAAACAC 59.421 38.462 17.40 0.00 32.44 3.32
2157 2507 5.255710 TCTTCAGAATGCGAAACCAAAAA 57.744 34.783 0.00 0.00 34.76 1.94
2220 2570 2.356135 ACGCATTTCTGTGGGACATAC 58.644 47.619 0.00 0.00 44.52 2.39
2287 2637 4.338879 CTGATTTTGGAGGTGTCTTGGAT 58.661 43.478 0.00 0.00 0.00 3.41
2296 2646 2.097825 GCAGATGCTGATTTTGGAGGT 58.902 47.619 0.00 0.00 38.21 3.85
2511 2861 2.170397 TGAACCAGCAGAACAGTTCAGA 59.830 45.455 15.85 0.00 42.61 3.27
2523 2873 2.079170 TGACCCAAAATGAACCAGCA 57.921 45.000 0.00 0.00 0.00 4.41
2589 2939 0.674534 GTTACCAGGGATCGCTCGAT 59.325 55.000 9.74 4.26 37.59 3.59
2603 2953 0.324645 TGGTAGGAGGGACCGTTACC 60.325 60.000 7.78 7.78 44.74 2.85
2607 2957 1.075450 GGATGGTAGGAGGGACCGT 60.075 63.158 0.00 0.00 44.74 4.83
2620 2970 1.227089 CGCTCCTCTTCACGGATGG 60.227 63.158 0.00 0.00 0.00 3.51
2664 3014 5.406477 GGCAGAAGGATTGTTCAATTTTGTC 59.594 40.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.