>input_sequence_71065
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--------------------------------------ATGGCACCGATGGCGGCTTCGGTTACCGCTTTCTGCGTCGCG
CTGCTGCTGGTTTCCCTCCAGGGCGCCCACCCGGCGCCTGAACCACAGACGACGGGGCCGTCGTCGTCCAGCTGCACCAC
CGAGCTCCTACGCCTCCTCCCCTGCCTCTCGTTCCTCGACGGCGGCGCCGCCGCGCCGCCCGACACCTGCTGCGCCAACC
TGGGGAGCATGGTGCACGACCAGCCGCTGTGCCTCTGCCAGGCCCTCAGCCAGTCCGGCTCCGGCAGGTCCCCTGTCTCC
GTGAACATGTCCCGCGTCGTGCTGCTGCCTTCCCTCTGCCGACTCGATGTCCCCGCCGATGCCAGCGCCTGCGCAGGTAC
CATAACTCAGCGCTGAATACTCTCCATCCGCGATCTCTTTCCGCAAAATGATTTTCTTCGGCCAGGGGTTCGCTACGT--
---ACTGAAAACCCTCTTTGAATCAATAACTGTCTTGAAGGGCTCCTTCCAGAGGGACAAGCACCGTCGCCGCCGGTGAG
CACGCCAGGCATGAGTGTGAACTCCACTGTTCCATCGACGCCGATGCCGACGACACCCATGCCACCACTGACAACATCCG
CACCGACGACCACCAGCCAGAATCCGGGATACAGCAGCGGGTCCAAGCTCATAGCTGATGCCATTTCTGCCGCACTTGGT
TTCATGGCGCTGGCAACAGTTTTAGGCTTCTAG-----------------------------------------------
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>chr2B_1_TraesCS2B01G344300
AAGAAATCCGAAAGAAAAACCCAAAGAAAACCATTACAAAAGAGTAAATAAAAAAGTGATAACTATGTTACAGTACCAAT
GCGGACAAGTACAGTAGCGAGAGGAGAAATGATTCAGCCGAGGGGAGCGTACATCTCGTCATAAGCGAGATATAGTTCCT
GTGG--------ATCTGATCCTCTTTGAAGAGCTCTTGCCAGCCCCAACAAGCTTTAAATTGGCCTAATTTGTACAATCT
CCTTAAAAATAGAACCGAAGGCCCATGACACTGCCGGA-AGGTAAAATGAGAAAATGTCACTTTCTTTTATTTCATGCCC
ATGAGAACCCAAAGCCCATTTTCTTTTTGCAGGTTAA-------------------------------------------
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------CGTACTAAAGTCCAAATTAGGATACTTCTGATTTGCTGCTAATTATTCCTTTTTTGCGGGTATGCTGCTAATTA
TTCCGTAATGATATGTTCTAGTATATTTTAACATCATAT-----------------------------------------
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----------------------------------AATTTCAACCAAATTTAGCTACAGTATATCGGTGTCTATCGATACC
AAAATTGTGATGAGGATATGGTTCCTTTGCTCCTTGGTTGCACATAGTACTAAATAAATGGAATTGCATTGTTTCATCTA
AA-GGAAAACTTGCGCAGGCCATTTGCTCACCTTATTTTAGCAACACCAAAAATTAGCTTTAATTTCTCATGCGCTATAG
TTGG----------TTAGGACATTCTGGTCAGCGGTCTCAAGTGGCCAGTAAGAGTCAATCCCACTTCACATGAAACCCC
CACCTACAACAAGGCAGTACAAGCACCATTCCCATGCGAGCCCAGACCCCCAACGCAATCCCAACGCTCCAACTCACACA
AAACTCCCCATCCCCACGCCGCTCTTCACGCATCTA--------TCTAGCAACGTTCCACTTCACGGAGACCACGTCCGG
AAGCACGCCATTGCCATGCATC------CCCGTTCGTCAGACGCTATAAATCCACACCTCCACCGTGGCCAATCACTCGA
TCAGATTCTTCACAGGCAGACTTGCAGAGAGCAGTACGATGGCACCGATGGCGGCTTCGGTTACCGCTTTCTGCGTCGCG
CTGCTGCTGGTTTCCCTCCAGGGCGCCCACCCGGCGCCTGAACCACAGACGACGGGGCCGTCGTCGTCCAGCTGCACCAC
CGAGCTCCTACGCCTCCTCCCCTGCCTCTCGTTCCTCGACGGCGGCGCCGCCGCGCCGCCCGACACCTGCTGCGCCAACC
TGGGGAGCATGGTGCACGACCAGCCGCTGTGCCTCTGCCAGGCCCTCAGCCAGTCCGGCTCCGGCAGGTCCCCTGTCTCC
GTGAACATGTCCCGCGTCGTGCTGCTGCCTTCCCTCTGCCGACTCGATGTCCCCGCCGATGCCAGCGCCTGCGCAGGTAC
CATAACTCAGCGCTGAATACTCTCCATCCGCGATCTCTTTCCGCAAAATGATTTTCTTCGGCCAGGGGTTCGCTACGT--
---ACTGAAAACCCTCTTTGAATCAATAACTGTCTTGAAGGGCTCCTTCCAGAGGGACAAGCACCGTCGCCGCCGGTGAG
CACGCCAGGCATGAGTGTGAACTCCACTGTTCCATCGACGCCGATGCCGACGACACCCATGCCACCACTGACAACATCCG
CACCGACGACCACCAGCCAGAATCCGGGATACAGCAGCGGGTCCAAGCTCATAGCTGATGCCATTTCTGCCGCACTTGGT
TTCATGGCGCTGGCAACAGTTTTAGGCTTCTAGTGTTCTGAAAAGATCGTCTAGACTTTCTGCAAACTAGAGTTTTCCTA
GAGAACTTAGTTATTCCCTCGTGTTTTTCTTAGCATCTGTAACAGCAAGAGGATTTAGTGGTTGAAGGAGTAATATGCTC
ACCCGGATGTTCTCCTGAATAAATAATTTTCACTTCAATTCTTTTTCGATGTCTTCTCCGTTCCATTTGTGCACTGGGTT
CTCGTTTCAGCCAAGCACCTATCTAGATAAATAATC--------------------------TAGGGAGTAATTATAGAG
TACCACAATGTGCAAAACTCTTTCAAATTTATAAGTCAGTTAAAACATAATCCATATGATAGGGAAAAAAAAACTACAAG
AAAACAGCGCAATATAACAGCTAATCCTTTTTCTCTTCTAAGCACAAGAGGTAGGCAACAATGCCAAGAACTGGGATAAA
CCTTGCTACATTCACAAACTCTGTAGTTTTTGGTTTCGCATTCTGAAGATTGTCTCCAATCAACCATGGCTGGAATATCG
AGTATAGCAGTATGTCCCACAGAAATGCGTAGGCAAGCCGCTCGGTCAAGACATAATCCTGCGCATATTGCCACCGATCC
AAGACACCTCCAAAATCAGCATCTGCCCGGCCGAAGAAAGCCCAAACAATGGATAAAATGCAGACCAGGCCACCAGTTAT
GCCTACACCGGATGCACCTCGCACCATGAGTGAACTCAGTTTTGATGTCTGCGGTGGAGGCTGGTTCTTGTCGACATCGT
TGAGCCGGATTGCCATGTAAGGAATCAAGAAAGCTACAAACAAAAATAGATGTAAGATAATCTGAACTGTTCTGCTGGTT
CATTTTGGGTCAAGGAGATCATACTATTTGTGAGGAACATCTGACAGCCCCACAAGATATCGAGCGATCCCTGGTAACGG
TCCCTCCTACCATCCGTGAAGAGGAGCGGCGCAAACAGCAGTGTCCAGGCAATGACAAAATTGAACAATCCTTCTGCCAC
CTAAGCAACGACTGACGAA
>chr2D_1
AAGAAATCCGAAAGAAAAACCCAAAGAAAATCATTACAAAAGAATAA--AAGAAAGTGATAACTATGTTACAGTACCGAT
CCGGACAAGTACAGTAGCGAGAGGAGAAATGCTTCAGCCGAGGGGAGCGTACATCTCGCGGTAAGCGAGATATAGCTCCC
GTGGATCTGATCATCTGATCCTCTTTGAAGAGCTCTTGCCAGCCCAG-CAAGCTAAAAATTGGCCTAATTTGTAAAATCT
CCTTAAAATG-GAATCGGAGGCCCATGACACCATCGGAGAGGGAAAATGAGAAAATGTCACTTCC-TTTATTTCATGCCC
ATGAAAACCCAAAGCCCATTTTCTTTTTGCAGGCTAACGTATTAAAGTCCACCGGCTCAGTCTCTCAAAGGTGCTCATAA
GGGGAGGATGTGCGTGTGTGCGTTTATAGGGTTGAGCGTATGCGCGTATGTATGAGCGCTTGCGTTTGTACTGTGTTAAA
AAAA-CCGTATTAAAGTCCAAATTCGGATGCTTTTGATTTGCTGCTAATTATTCC-------------------------
----GTAATGACATGTTATATACTCCCTCCGTTCCAAAATATAAGTCTTTGAAAAGATTCTACTATGAACTATATACGGA
TGTATATAGATGCATTTTAGGTGTGGATTTATTCATTTTACTTCGTATGTAGTCTATCTAGTAAAATCTCTATAAAGACT
TACATTTAGGAATGGAGGGAGTATTTATCTTCGAAATTTCAACCAAATTTAGCCACTG----TCGGTATTTACTGATGCC
AAAATTGTGATGAGGATATTGTTCCTTTGCTCCTTGGTTGCACGTAGTAGTAAATAAATGGAATTGCAGTGTTCCATCTA
AAAGGGAACTTGCTGCAGGCCATCTAGGCACCTTATTTTAGCAACACCCAAATTTGGCTGTAATTTCTCATGTGCTATAG
TATTCGGTTAGGACTTGGGACATTCTGGTCAGCGGTCTCAAGTGGCCGGTAAGAGTCAATCCCACTTCACATGAAACCCC
AACCTACAACAAGGCAGTACAAGCACCATTCCCATGCGATCCCAGACCCCCAACGCAATCCCAACGCTCCGATTCACACA
AAACTCCCCATCCCCACGCGGCTCTTCACGCATATCATCTAG----TAGCAACGTTCAACTTCACGGAGGCCACGTCCGG
AAGCACGCCGTTGCCATGCATGATGCATCCCGTTCCTCAGATGCTATAAATCCCCACCTCCACCGTGGCCAATCACTCGA
TCAGATTCTTCACAGGCAAACTTGCAGAGAGCAGCACGATGGCACCGATGGCGGCTTCGGCTACTGCATTCTGCGTCGCG
CTGCTGCTGGTTTCCCTGCCCCGTGCCCATCCGGCGCCTGAACCACAGACGACGGGGTCGTCGTCGTCCAGCTGCACCAC
CGAGCTCCTACGCCTCCTCCCCTGCCTCTCGTTCCTCGACGGCGGCGCCGCCGCGCCGCCCGACACGTGCTGCGCCAACC
TGGGGAGCATGGTGCACGACCAGCCGCTGTGCCTCTGCCAGGCGCTCAGCCAGTCCGGCTCCGGCAGGTCCCCAGTCGCC
GTGAATATGTCCCGCGCCGTGCTGCTGCCTTCCGTCTGCCGGCTCGATCTCCCCGCCGCCGCCAGCGCCTGCTCAGGTAC
CATAACTCAGCGCTGAATACTCTCCATTCGCGATCTCTTTCTGCAAAATGATTTTCTTCGGCCAGGGAATCTACACATAC
TGAACTGAAATGTCTCGTTGGATTAATAACTGTCTTGAAGGGCTCCTTCCAGCGGGACAAGAACCATCACCGCCGGTGAG
CACGCCAGGCATGAGTGTGAACTCCACTGTTCCATCGACGCCGACGCCGACGACGCCGATGCCACCGCTGACAACAGCCG
CACCGACGACCACCAGCCAGAATCCGGGATACAGCAGCGGGTCCAAGCTCATAGCTGATGCCATTTCTGCCGCACTTGGT
TTCATGGCGCTGGCAACAGTTTTAGGCTTCTAGCGTTCTGAAAAGATCCTCTAGACTTTCTGCAAACTAGCATTTTCCTA
GAGAACTTAGTTATTCCCCCATGTTTTTCTTAGCATCTGTAACAGCAAGAGGATTTAGTGGTTGAAGGAGTAATATGCTC
ATCCGGATGTTCTCCTGAATAAATAATTTTCACTTCAATTCTTTTTCGATGTCTTCTCCGTTCCATTTGTGCACTGGGTT
CTTGTTTCAGCCAAGCAC-TATCTTGATAAATGATC--------------------------TAGGGAGTAATTATAGAG
TACCACAATGTGCAAAACTCTTTCAAATTTATAAGTCAGTTGGAACATAATCCATATGATAGG--AAAAAAAACTACAAG
AAAACAGCACAATATAACAGCTAATCCTTTTTCTCTTCTAAGCACAAGAGGTAGGCAACAATGCCAACAACTGGGATAAA
CCTTGCTACATTCACAAACTCTCTAGCTTTTGGTTTCACGTTCTGAAGATTGTCTCCAATCAACCATGGCTGGAATATCG
AGTATAGCAATATGTCCCACAGAAATGCATAAGCAAGCCGCTCGGTCAAGACATAATCCTGCGCATATTGCCACCGGTCC
AAGACGCCTCCAAAATCAGCATCTGCACGGCCGAAGAAAGCCCAAACAATGGATAAAATGCAGACCAGGCCACCAGTTAT
GCCTACACCTGATGCACCTCTCACCATGAGTGAACTCAGTTTTGATGTCTGCGGTGGAGGCTGGTTCTTGTCGACATCGT
TGAGCCGGATTGCCATGTAAGGAATCAAGAAAGCTACAAACAAAAATAGATGTAAGATAACCTGAACTGCTCAGCTGGTT
CATTTTGGGTCAAGGAGATCATACTATTTGTGAGGAACATCTGACAGCCCCACAAGATGTCGAGCGATCCCTCGTACCGG
TCCCTCCTAGCATCTGTGAAGAGGAGCGGTGCAAACAGCAGTGTCCAGGCAATCACAAAATTGAACAATCCTTCTGACAC
CTAAGCAACGACTGACGAA
>chr2A_1
AAGAAATCCGAAAGAAAAACCCAAAGAAAACCATTACAAAAGAATAA--AAAAAAGTGATAACCATGTTACAGTACCAAT
CCGGACAAGTACAGTAGCGAGAGGAGAAATGCTTCAGCCGAGGGGAGCGTACATCTCGCGGTAAGCGAGATATAACTCCC
GTGGATCTGATCATCTGATCCTCTTTGAAGAGCTCTTGCCAGCCCAG-CAAGCTAAAAATTGGCCTAATTTGTAAAATCT
CCTTAAAATG-GAATCGGAGGCCCATGACACTCCCAGA-AGGGAAAATGAGAAAATGTCACTTCC-TTTATTTCATGCCC
ATGAAAACCCAAAGCCCATTTTCTTTTTGTA-GCTAACGTATTAAAGTCCACCGGCTCACACTCTCGAAGGTGCTCATAG
GGGGAGGGTGTGCGTGTGTGCGTTTATAGGGTTGCGTGTATGCACGTATGTATGAGCGCTT-CGTCTGTACTGTGTAAAA
AAAACCCGTATTAAAGTCCAAATTCGGATACTTTTGATTTGCTGCTAATTATTCC-------------------------
----GTA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CTTCAAAATTTCAACCAAATTTAGCTTCAGTCTATCGGTATTTACTGATGCC
AAAATTGTGATGAGGATATGGTTCCTTTGCTCCTTGGTTGCACATAGTAGAAAATAAATGGAATTGCAGTGTTCCATCTA
AAAGGAAACTTCCTGCAGGCCATCTAGCCACCTTATTTTAGCAACACCAAAATCTGGCTTTAATTTCTCATGTGCTTATT
GT---GGTTAGGACTTAGGACATTCTGGTCAGCAGTCTCAAGTGGCCGGTAAGAGTCAATCCCACTTCACATGAAACCCC
TACCTACAACAAGGCAGTACAAGCACCATTGCCATGCGATCCCAGACCCCCAACGCAATCCCAACGCTCCGACTCACACA
AAACTCCCCATCCCCACGCGGCTCTTCACGCATACTGTCTAGTGTCTAGCAACGTTCAACTTCACGGAGATCACGTCCGG
AAGCACGCCATTGCCATGCATC------CCCGTTCCTCAGACTCTATAAATCCACACCTCCACCGTGGCCAATCACTCGA
TCAGATTCTTCACAGGCAGACTTGCAGAGAGCAATACGATGGCAGCAATGGCGGCTTCGGCTACTGCATTCTGCGTCGCG
CTGCTGCTGGTTTCCCTCCAGGGCGCCCACCCGGCGCCTGAACCACAGACCACGGGCCCGTCGTCGTCCAGCTGCACCAC
CGAGCTCCTACGCCTCCTCCCCTGCCTCTCCTTCCTCGACGGCGGCGCCGCCGCGCCGCCCGACACCTGCTGCGCCAACC
TGGGGAGCATGGTGCACGACGAGCCGCTGTGCCTCTGCCAGGCGCTCAGCCAGTCCGGCTCCGGCAGGTCCCCTGTCGCC
GTCAACATGTCCCGCGCCGTGCTGCTGCCTTCCCTCTGCCGGCTCGATCTCCCCGCCGCCGCCGGCGCCTGCCAAGGTA-
--TAACTTAGAGCTGGAATTCTCCATT---CGATCTCTTTGTGCAAAATGGTTTTCTTCAGCCAGGGACTCGCTACAT--
---ACTGAAATGTCTCTTTGAATCAATAACTGTCTTGAAGGGCTCCTTCCAGCGGGACAAGAACCGTCACCGCCGGTGAG
CGTGCCAAGCACGAGTGTGAACTCCACTGCTCCATCGATGCCGACGCCGATGACACCGATGACACCACTGACTACAGCCG
CACCGAGGACGACCAGCCAGAATCCGGGATACAGCAGCGGGTCCAAGCTCATAGCTGATGCCATTTCTGCCGCACTTGGT
TTCATGGCGCTGGCGACAG--------TTCTAGCGTTCTGAAATGATCATCTAGACTTTCTGCAAATTAGAGTTTTCCTA
GAGAATTTAGTTATTGCCTGATGTTTTTCTTAGCGCCTGTAACAGCAAGAGGATTTAGTTGTTGAAGGAGTGATTTGTTC
ATCCGGATGTTCTCCTGAATAAATAATTTTCACTTAAATTCTTTTTCGATGTCTTCTCCGTTCCATTTGTGCACTGGGTT
CTCGTTTCAGCCAAGCAC-TATCTTGATAAATAATCCAGGGCTTGTTTCAAAAAAAAATATCTAGGGAGTAATTGTAGAG
TACCACAATGTGCAAAATTCTTTCAAATTTATAAGTCAGTTAGAACATAATCCATATGATAGGGAAC-AAAAGCTACAGG
AAAACAGCGCAATATAACAGCTAATCTTTTTTCTCTTCTAAGCACAAGAGGTAGGCAACAATACCAAGAACTGGGATAAA
CCTTGCTACATTCACAAACGCTGTAGCTTCTGGTTTTACGTTCTGAAGATTGTCTCCAATCAGCCATGGCTGGAACATCG
AGTATAGAAATATGTCCCACAGAAATGCATAAGCAAATCGCTCGGTCAAGAAATAATCCTGCGCATATTGCCACCGGTCC
AAGACGCCTCCAAAATCAGCATCTGCACGGCCAAAGAAAGCCCAAGCAACGGATAGAATGCAGACCAGGCCACCAGTTAT
GCCTACACCTGATGCACCTCTCACTATGACTGAACTCAGTTTTGTTGTCTGCGGTGGAGGCTGGTTCTTGTCGACCTCGT
TGAGCCGGATTGCCATGTAAGGAATCAAGAAAGCTACAAACAAAAATAGGTATAAGATAACCTGAACTGTTCAGCTGGTT
CATTTTGGGTCAAGGAGATCATACTATTTGTAAGGAACATCTGACAGCCCCACAAGATGTCGAGCGATCCCTTGTACCGG
TCCCTCCTAGCATCCGTGAAGAGGAGCGGCGCAAATAGCAGCGTCCAGGCAATTACAAAATTGAACAATCCTTCGTCCAC
CTAAGCAACCACGGA----
>SNPs
-------------------------------------------S---SS-------------------------------
S------------------------------S--------------------------SSS--------------S---S
---------------------------------------------SSS------SS------------------S-----
--------SSS---S--S--------------S---------S--------------------S-S--------------
----S----------------------------S----------------------------------------------
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----------S-------------S--------S---------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-------S-----S--SSS-SSS-SSSSSS--S-S-----------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S-------S-S--SS---S--
-------------------------------------------------S------------------S----S------
--------SS-SSS---------S-SSS------------------------S--S----------------S-------
--SS-------------------------------------------S--------------------------------
S--------------------------------------S------------------------------S---------
-------------------S-------------S-S---------------------S----------------------
-----------------------------------S--------------------------------------------
------------------------------------------------------------S---S--S------------
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-------------------------------------------S---------------------------------S--
----------------S------------------------S------S---------SS------------S-------
---------------------------S-------------S-------------------------SS-------S---
----------SSS---------------------------------------S--------S------S-----------
--------------------------------------------S------------S------------------S---
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---------------------------------S--------------S-------------------------------
--------------------S-----------------------------------------------------------
-S------------------------------------------------------------------------------
------------------S-----S-------------------------------------------------------
------------------------------------------S-------------------------------------
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--------------------------S----------S-S----------------------------------------
---------S------------------S--S--------------------------------------------S---
-----S--------------------S-----------------------------------------------------
---------S----------S-----------------------------------------------------------
------------------------------------------------------------S-----------S-------
----------------------------------------------------------S-------------S---S---
---------S-------------------------------------------S--------------------------
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>forward_904
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----GAAAACTTGCGCAGGCCATT--------------------------------------------------------
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>reverse_2953
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------------------------------------------------------------------------GGTAACGG
TCCCTCCTACCA--------------------------------------------------------------------
-------------------
