Multiple sequence alignment - TraesCS2B01G342200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G342200 chr2B 100.000 3483 0 0 1 3483 488190847 488194329 0.000000e+00 6433
1 TraesCS2B01G342200 chr2B 89.542 459 25 6 1 436 177399918 177400376 8.440000e-156 560
2 TraesCS2B01G342200 chr2B 89.286 448 23 7 14 436 92785715 92786162 3.960000e-149 538
3 TraesCS2B01G342200 chr2B 90.191 418 28 2 1 405 775175615 775175198 1.840000e-147 532
4 TraesCS2B01G342200 chr2B 86.910 466 31 11 1 436 635756856 635756391 2.410000e-136 496
5 TraesCS2B01G342200 chr2D 94.978 2728 66 29 537 3244 414954630 414957306 0.000000e+00 4213
6 TraesCS2B01G342200 chr2D 85.231 562 42 18 2697 3244 416390016 416390550 1.100000e-149 540
7 TraesCS2B01G342200 chr2D 96.386 249 9 0 3235 3483 414957330 414957578 9.000000e-111 411
8 TraesCS2B01G342200 chr2D 90.975 277 18 4 2154 2429 414961702 414961972 1.980000e-97 366
9 TraesCS2B01G342200 chr2D 87.805 287 10 8 2363 2649 414961971 414962232 2.610000e-81 313
10 TraesCS2B01G342200 chr2A 93.734 2729 106 32 537 3244 581940674 581943358 0.000000e+00 4032
11 TraesCS2B01G342200 chr2A 92.157 459 30 5 2154 2609 581962506 581962961 0.000000e+00 643
12 TraesCS2B01G342200 chr2A 93.548 217 9 2 3235 3446 581943382 581943598 5.610000e-83 318
13 TraesCS2B01G342200 chr4B 91.361 463 17 7 1 440 560192308 560192770 2.300000e-171 612
14 TraesCS2B01G342200 chr4B 89.805 461 22 3 1 436 571039793 571040253 5.050000e-158 568
15 TraesCS2B01G342200 chr4B 89.278 457 26 2 3 436 16672791 16673247 5.080000e-153 551
16 TraesCS2B01G342200 chr4B 83.442 459 73 2 1977 2432 613375728 613376186 1.160000e-114 424
17 TraesCS2B01G342200 chr3B 89.565 460 24 8 1 436 741965004 741965463 2.350000e-156 562
18 TraesCS2B01G342200 chr7B 90.670 418 23 2 1 405 144068200 144068614 3.060000e-150 542
19 TraesCS2B01G342200 chr7B 88.152 422 32 12 1 405 565203433 565203013 1.450000e-133 486
20 TraesCS2B01G342200 chr1B 89.882 425 23 9 1 405 647307821 647307397 2.380000e-146 529
21 TraesCS2B01G342200 chr1B 88.222 450 37 8 1 436 429176597 429177044 1.110000e-144 523
22 TraesCS2B01G342200 chr4A 87.821 468 25 11 1 436 691661925 691661458 1.430000e-143 520
23 TraesCS2B01G342200 chr4A 87.366 467 27 12 1 436 656028775 656029240 1.120000e-139 507
24 TraesCS2B01G342200 chr4A 88.706 425 28 8 1 405 656248519 656248943 5.190000e-138 501
25 TraesCS2B01G342200 chr4D 79.703 606 114 7 1831 2432 483138148 483138748 2.480000e-116 429
26 TraesCS2B01G342200 chr5A 83.442 459 73 2 1977 2432 663305687 663306145 1.160000e-114 424
27 TraesCS2B01G342200 chr7D 96.512 86 1 1 439 522 393033412 393033327 1.300000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G342200 chr2B 488190847 488194329 3482 False 6433.0 6433 100.000 1 3483 1 chr2B.!!$F3 3482
1 TraesCS2B01G342200 chr2D 414954630 414957578 2948 False 2312.0 4213 95.682 537 3483 2 chr2D.!!$F2 2946
2 TraesCS2B01G342200 chr2D 416390016 416390550 534 False 540.0 540 85.231 2697 3244 1 chr2D.!!$F1 547
3 TraesCS2B01G342200 chr2D 414961702 414962232 530 False 339.5 366 89.390 2154 2649 2 chr2D.!!$F3 495
4 TraesCS2B01G342200 chr2A 581940674 581943598 2924 False 2175.0 4032 93.641 537 3446 2 chr2A.!!$F2 2909
5 TraesCS2B01G342200 chr4D 483138148 483138748 600 False 429.0 429 79.703 1831 2432 1 chr4D.!!$F1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 514 0.034616 GCCTTGAGATCGCCTATGCT 59.965 55.0 0.0 0.0 34.43 3.79 F
1051 1059 0.035056 GCCACTCCAGGTATGCTGTT 60.035 55.0 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2206 2231 1.053835 TCTTGGAGACCTGCACCACA 61.054 55.0 0.00 0.0 36.95 4.17 R
3013 3112 0.981183 ATCCACCTAGGTTTGACGCA 59.019 50.0 13.15 0.0 39.02 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.351450 GGAACCCACGAAGGCAAC 58.649 61.111 0.00 0.00 35.39 4.17
20 21 2.265904 GGAACCCACGAAGGCAACC 61.266 63.158 0.00 0.00 35.39 3.77
21 22 1.527380 GAACCCACGAAGGCAACCA 60.527 57.895 0.00 0.00 35.39 3.67
22 23 1.515521 GAACCCACGAAGGCAACCAG 61.516 60.000 0.00 0.00 35.39 4.00
23 24 2.113139 CCCACGAAGGCAACCAGT 59.887 61.111 0.00 0.00 35.39 4.00
24 25 1.373435 CCCACGAAGGCAACCAGTA 59.627 57.895 0.00 0.00 35.39 2.74
25 26 0.673644 CCCACGAAGGCAACCAGTAG 60.674 60.000 0.00 0.00 35.39 2.57
26 27 0.673644 CCACGAAGGCAACCAGTAGG 60.674 60.000 0.00 0.00 42.21 3.18
27 28 0.673644 CACGAAGGCAACCAGTAGGG 60.674 60.000 0.00 0.00 44.81 3.53
28 29 0.834687 ACGAAGGCAACCAGTAGGGA 60.835 55.000 0.00 0.00 41.15 4.20
29 30 0.323629 CGAAGGCAACCAGTAGGGAA 59.676 55.000 0.00 0.00 41.15 3.97
30 31 1.822506 GAAGGCAACCAGTAGGGAAC 58.177 55.000 0.00 0.00 41.15 3.62
31 32 0.036306 AAGGCAACCAGTAGGGAACG 59.964 55.000 0.00 0.00 41.15 3.95
32 33 0.834687 AGGCAACCAGTAGGGAACGA 60.835 55.000 0.00 0.00 41.15 3.85
33 34 0.672711 GGCAACCAGTAGGGAACGAC 60.673 60.000 0.00 0.00 41.15 4.34
34 35 1.012486 GCAACCAGTAGGGAACGACG 61.012 60.000 0.00 0.00 41.32 5.12
35 36 0.599558 CAACCAGTAGGGAACGACGA 59.400 55.000 0.00 0.00 41.32 4.20
36 37 1.203994 CAACCAGTAGGGAACGACGAT 59.796 52.381 0.00 0.00 41.32 3.73
37 38 2.424601 CAACCAGTAGGGAACGACGATA 59.575 50.000 0.00 0.00 41.32 2.92
38 39 2.941480 ACCAGTAGGGAACGACGATAT 58.059 47.619 0.00 0.00 41.32 1.63
39 40 2.883386 ACCAGTAGGGAACGACGATATC 59.117 50.000 0.00 0.00 41.32 1.63
47 48 3.422997 CGACGATATCGCGAACGG 58.577 61.111 26.68 15.36 45.52 4.44
48 49 2.073220 CGACGATATCGCGAACGGG 61.073 63.158 26.68 18.62 45.52 5.28
49 50 1.728426 GACGATATCGCGAACGGGG 60.728 63.158 24.59 14.50 44.43 5.73
50 51 2.121564 GACGATATCGCGAACGGGGA 62.122 60.000 24.59 7.43 44.43 4.81
51 52 1.008194 CGATATCGCGAACGGGGAA 60.008 57.895 15.24 0.00 41.37 3.97
52 53 1.002250 CGATATCGCGAACGGGGAAG 61.002 60.000 15.24 0.00 41.37 3.46
53 54 1.282930 GATATCGCGAACGGGGAAGC 61.283 60.000 15.24 0.00 41.37 3.86
73 74 2.279469 CGCTCGACGCTAAAGAAGG 58.721 57.895 5.53 0.00 36.13 3.46
74 75 0.179171 CGCTCGACGCTAAAGAAGGA 60.179 55.000 5.53 0.00 36.13 3.36
75 76 1.270068 GCTCGACGCTAAAGAAGGAC 58.730 55.000 0.00 0.00 35.14 3.85
76 77 1.135344 GCTCGACGCTAAAGAAGGACT 60.135 52.381 0.00 0.00 35.14 3.85
77 78 2.097142 GCTCGACGCTAAAGAAGGACTA 59.903 50.000 0.00 0.00 35.14 2.59
78 79 3.243134 GCTCGACGCTAAAGAAGGACTAT 60.243 47.826 0.00 0.00 35.14 2.12
79 80 4.529446 CTCGACGCTAAAGAAGGACTATC 58.471 47.826 0.00 0.00 0.00 2.08
80 81 3.002042 TCGACGCTAAAGAAGGACTATCG 59.998 47.826 0.00 0.00 0.00 2.92
81 82 3.242673 CGACGCTAAAGAAGGACTATCGT 60.243 47.826 0.00 0.00 0.00 3.73
82 83 4.025396 CGACGCTAAAGAAGGACTATCGTA 60.025 45.833 0.00 0.00 0.00 3.43
83 84 5.503031 CGACGCTAAAGAAGGACTATCGTAA 60.503 44.000 0.00 0.00 0.00 3.18
84 85 5.819059 ACGCTAAAGAAGGACTATCGTAAG 58.181 41.667 0.00 0.00 0.00 2.34
96 97 3.999821 TCGTAAGAGCAGGCAACAA 57.000 47.368 0.00 0.00 45.01 2.83
97 98 1.795768 TCGTAAGAGCAGGCAACAAG 58.204 50.000 0.00 0.00 45.01 3.16
98 99 0.166814 CGTAAGAGCAGGCAACAAGC 59.833 55.000 0.00 0.00 41.67 4.01
99 100 3.425960 CGTAAGAGCAGGCAACAAGCG 62.426 57.143 0.00 0.00 43.66 4.68
125 126 2.357760 GGAACAACTGCCGCCGTA 60.358 61.111 0.00 0.00 0.00 4.02
126 127 1.962306 GGAACAACTGCCGCCGTAA 60.962 57.895 0.00 0.00 0.00 3.18
127 128 1.205820 GAACAACTGCCGCCGTAAC 59.794 57.895 0.00 0.00 0.00 2.50
128 129 2.178892 GAACAACTGCCGCCGTAACC 62.179 60.000 0.00 0.00 0.00 2.85
129 130 2.666862 CAACTGCCGCCGTAACCA 60.667 61.111 0.00 0.00 0.00 3.67
130 131 2.667199 AACTGCCGCCGTAACCAC 60.667 61.111 0.00 0.00 0.00 4.16
141 142 0.110823 CGTAACCACGCAACAAGAGC 60.111 55.000 0.00 0.00 42.05 4.09
142 143 0.941542 GTAACCACGCAACAAGAGCA 59.058 50.000 0.00 0.00 0.00 4.26
143 144 1.069906 GTAACCACGCAACAAGAGCAG 60.070 52.381 0.00 0.00 0.00 4.24
144 145 2.063541 AACCACGCAACAAGAGCAGC 62.064 55.000 0.00 0.00 0.00 5.25
147 148 3.043713 CGCAACAAGAGCAGCGGA 61.044 61.111 0.00 0.00 45.83 5.54
148 149 2.866028 GCAACAAGAGCAGCGGAG 59.134 61.111 0.00 0.00 0.00 4.63
149 150 1.669115 GCAACAAGAGCAGCGGAGA 60.669 57.895 0.00 0.00 0.00 3.71
150 151 1.905922 GCAACAAGAGCAGCGGAGAC 61.906 60.000 0.00 0.00 0.00 3.36
178 179 2.483583 AAAAAGAACAATGCGCGACA 57.516 40.000 12.10 8.22 0.00 4.35
179 180 2.483583 AAAAGAACAATGCGCGACAA 57.516 40.000 12.10 0.00 0.00 3.18
180 181 2.036556 AAAGAACAATGCGCGACAAG 57.963 45.000 12.10 7.50 0.00 3.16
181 182 0.238289 AAGAACAATGCGCGACAAGG 59.762 50.000 12.10 6.77 0.00 3.61
182 183 1.154225 GAACAATGCGCGACAAGGG 60.154 57.895 12.10 4.25 0.00 3.95
183 184 1.852067 GAACAATGCGCGACAAGGGT 61.852 55.000 12.10 2.50 34.93 4.34
184 185 1.452145 AACAATGCGCGACAAGGGTT 61.452 50.000 12.10 10.54 34.93 4.11
185 186 1.154225 CAATGCGCGACAAGGGTTC 60.154 57.895 12.10 0.00 34.93 3.62
186 187 2.677003 AATGCGCGACAAGGGTTCG 61.677 57.895 12.10 0.00 34.93 3.95
198 199 3.655481 GGTTCGCCCACAACAGAG 58.345 61.111 0.00 0.00 0.00 3.35
199 200 1.070786 GGTTCGCCCACAACAGAGA 59.929 57.895 0.00 0.00 0.00 3.10
200 201 0.534203 GGTTCGCCCACAACAGAGAA 60.534 55.000 0.00 0.00 0.00 2.87
201 202 1.305201 GTTCGCCCACAACAGAGAAA 58.695 50.000 0.00 0.00 0.00 2.52
202 203 1.673920 GTTCGCCCACAACAGAGAAAA 59.326 47.619 0.00 0.00 0.00 2.29
203 204 2.045561 TCGCCCACAACAGAGAAAAA 57.954 45.000 0.00 0.00 0.00 1.94
204 205 1.673920 TCGCCCACAACAGAGAAAAAC 59.326 47.619 0.00 0.00 0.00 2.43
205 206 1.403679 CGCCCACAACAGAGAAAAACA 59.596 47.619 0.00 0.00 0.00 2.83
206 207 2.541588 CGCCCACAACAGAGAAAAACAG 60.542 50.000 0.00 0.00 0.00 3.16
207 208 2.687935 GCCCACAACAGAGAAAAACAGA 59.312 45.455 0.00 0.00 0.00 3.41
208 209 3.319122 GCCCACAACAGAGAAAAACAGAT 59.681 43.478 0.00 0.00 0.00 2.90
209 210 4.557496 GCCCACAACAGAGAAAAACAGATC 60.557 45.833 0.00 0.00 0.00 2.75
210 211 4.823989 CCCACAACAGAGAAAAACAGATCT 59.176 41.667 0.00 0.00 0.00 2.75
211 212 5.049129 CCCACAACAGAGAAAAACAGATCTC 60.049 44.000 0.00 0.00 41.92 2.75
212 213 5.528690 CCACAACAGAGAAAAACAGATCTCA 59.471 40.000 0.00 0.00 43.62 3.27
213 214 6.038603 CCACAACAGAGAAAAACAGATCTCAA 59.961 38.462 0.00 0.00 43.62 3.02
214 215 7.415541 CCACAACAGAGAAAAACAGATCTCAAA 60.416 37.037 0.00 0.00 43.62 2.69
215 216 7.970061 CACAACAGAGAAAAACAGATCTCAAAA 59.030 33.333 0.00 0.00 43.62 2.44
216 217 7.970614 ACAACAGAGAAAAACAGATCTCAAAAC 59.029 33.333 0.00 0.00 43.62 2.43
217 218 7.630242 ACAGAGAAAAACAGATCTCAAAACA 57.370 32.000 0.00 0.00 43.62 2.83
218 219 7.701445 ACAGAGAAAAACAGATCTCAAAACAG 58.299 34.615 0.00 0.00 43.62 3.16
219 220 7.554118 ACAGAGAAAAACAGATCTCAAAACAGA 59.446 33.333 0.00 0.00 43.62 3.41
220 221 8.566260 CAGAGAAAAACAGATCTCAAAACAGAT 58.434 33.333 0.00 0.00 43.62 2.90
221 222 8.782144 AGAGAAAAACAGATCTCAAAACAGATC 58.218 33.333 0.00 2.72 46.53 2.75
231 232 8.729805 GATCTCAAAACAGATCAAGAGGTATT 57.270 34.615 5.72 0.00 45.77 1.89
232 233 9.823647 GATCTCAAAACAGATCAAGAGGTATTA 57.176 33.333 5.72 0.00 45.77 0.98
303 304 3.374220 GGGAAACCGAAAACCGAAATT 57.626 42.857 0.00 0.00 43.64 1.82
304 305 3.311106 GGGAAACCGAAAACCGAAATTC 58.689 45.455 0.00 0.00 43.64 2.17
305 306 3.243468 GGGAAACCGAAAACCGAAATTCA 60.243 43.478 0.00 0.00 43.64 2.57
306 307 3.732219 GGAAACCGAAAACCGAAATTCAC 59.268 43.478 0.00 0.00 41.76 3.18
307 308 2.673976 ACCGAAAACCGAAATTCACG 57.326 45.000 0.00 0.00 41.76 4.35
315 316 0.727398 CCGAAATTCACGGGAGAAGC 59.273 55.000 13.84 0.00 45.65 3.86
316 317 0.727398 CGAAATTCACGGGAGAAGCC 59.273 55.000 0.00 0.00 0.00 4.35
317 318 0.727398 GAAATTCACGGGAGAAGCCG 59.273 55.000 0.00 0.00 37.63 5.52
318 319 0.036306 AAATTCACGGGAGAAGCCGT 59.964 50.000 0.00 0.00 43.68 5.68
344 345 4.059459 CAAGTGTCACGCGCGGAC 62.059 66.667 35.22 32.83 35.83 4.79
364 365 1.002366 CGCATCGGAAAAGTCTCAGG 58.998 55.000 0.00 0.00 0.00 3.86
365 366 1.404181 CGCATCGGAAAAGTCTCAGGA 60.404 52.381 0.00 0.00 0.00 3.86
366 367 2.275318 GCATCGGAAAAGTCTCAGGAG 58.725 52.381 0.00 0.00 0.00 3.69
367 368 2.275318 CATCGGAAAAGTCTCAGGAGC 58.725 52.381 0.00 0.00 0.00 4.70
368 369 0.243907 TCGGAAAAGTCTCAGGAGCG 59.756 55.000 0.00 0.00 0.00 5.03
369 370 1.355066 CGGAAAAGTCTCAGGAGCGC 61.355 60.000 0.00 0.00 0.00 5.92
370 371 0.036858 GGAAAAGTCTCAGGAGCGCT 60.037 55.000 11.27 11.27 0.00 5.92
371 372 1.355005 GAAAAGTCTCAGGAGCGCTC 58.645 55.000 29.38 29.38 0.00 5.03
386 387 3.767230 CTCCGCGCGTGACACTTG 61.767 66.667 29.95 10.76 0.00 3.16
425 426 4.388499 GCGGGGAGCGTTCCTCAA 62.388 66.667 19.09 0.00 45.01 3.02
426 427 2.584608 CGGGGAGCGTTCCTCAAT 59.415 61.111 19.09 0.00 45.01 2.57
427 428 1.078426 CGGGGAGCGTTCCTCAATT 60.078 57.895 19.09 0.00 45.01 2.32
428 429 0.177141 CGGGGAGCGTTCCTCAATTA 59.823 55.000 19.09 0.00 45.01 1.40
429 430 1.806623 CGGGGAGCGTTCCTCAATTAG 60.807 57.143 19.09 0.00 45.01 1.73
430 431 1.209747 GGGGAGCGTTCCTCAATTAGT 59.790 52.381 18.44 0.00 44.08 2.24
431 432 2.280628 GGGAGCGTTCCTCAATTAGTG 58.719 52.381 18.44 0.00 43.49 2.74
432 433 2.093658 GGGAGCGTTCCTCAATTAGTGA 60.094 50.000 18.44 0.00 43.49 3.41
433 434 3.432326 GGGAGCGTTCCTCAATTAGTGAT 60.432 47.826 18.44 0.00 43.49 3.06
434 435 4.192317 GGAGCGTTCCTCAATTAGTGATT 58.808 43.478 11.59 0.00 42.62 2.57
435 436 4.636206 GGAGCGTTCCTCAATTAGTGATTT 59.364 41.667 11.59 0.00 42.62 2.17
436 437 5.123979 GGAGCGTTCCTCAATTAGTGATTTT 59.876 40.000 11.59 0.00 42.62 1.82
437 438 5.942872 AGCGTTCCTCAATTAGTGATTTTG 58.057 37.500 0.00 0.00 35.07 2.44
438 439 4.558860 GCGTTCCTCAATTAGTGATTTTGC 59.441 41.667 0.00 0.00 35.07 3.68
439 440 5.698832 CGTTCCTCAATTAGTGATTTTGCA 58.301 37.500 0.00 0.00 35.07 4.08
440 441 6.148948 CGTTCCTCAATTAGTGATTTTGCAA 58.851 36.000 0.00 0.00 35.07 4.08
441 442 6.306356 CGTTCCTCAATTAGTGATTTTGCAAG 59.694 38.462 0.00 0.00 35.07 4.01
442 443 7.370383 GTTCCTCAATTAGTGATTTTGCAAGA 58.630 34.615 0.00 0.00 35.07 3.02
443 444 7.523293 TCCTCAATTAGTGATTTTGCAAGAA 57.477 32.000 0.00 0.00 35.07 2.52
444 445 8.125978 TCCTCAATTAGTGATTTTGCAAGAAT 57.874 30.769 0.00 2.97 35.07 2.40
445 446 9.241919 TCCTCAATTAGTGATTTTGCAAGAATA 57.758 29.630 0.00 0.00 35.07 1.75
448 449 9.304731 TCAATTAGTGATTTTGCAAGAATATGC 57.695 29.630 0.00 0.00 46.58 3.14
449 450 8.545420 CAATTAGTGATTTTGCAAGAATATGCC 58.455 33.333 0.00 0.00 45.83 4.40
450 451 5.664294 AGTGATTTTGCAAGAATATGCCA 57.336 34.783 0.00 0.00 45.83 4.92
451 452 6.040209 AGTGATTTTGCAAGAATATGCCAA 57.960 33.333 0.00 0.00 45.83 4.52
452 453 6.465948 AGTGATTTTGCAAGAATATGCCAAA 58.534 32.000 0.00 1.76 45.83 3.28
453 454 6.935771 AGTGATTTTGCAAGAATATGCCAAAA 59.064 30.769 0.00 7.14 45.83 2.44
454 455 7.017055 GTGATTTTGCAAGAATATGCCAAAAC 58.983 34.615 0.00 2.05 45.83 2.43
455 456 6.935771 TGATTTTGCAAGAATATGCCAAAACT 59.064 30.769 0.00 0.00 45.83 2.66
456 457 7.444792 TGATTTTGCAAGAATATGCCAAAACTT 59.555 29.630 0.00 0.00 45.83 2.66
457 458 7.565323 TTTTGCAAGAATATGCCAAAACTTT 57.435 28.000 0.00 0.00 45.83 2.66
458 459 7.565323 TTTGCAAGAATATGCCAAAACTTTT 57.435 28.000 0.00 0.00 45.83 2.27
459 460 7.565323 TTGCAAGAATATGCCAAAACTTTTT 57.435 28.000 0.00 0.00 45.83 1.94
460 461 6.957150 TGCAAGAATATGCCAAAACTTTTTG 58.043 32.000 7.36 7.36 45.83 2.44
461 462 6.765036 TGCAAGAATATGCCAAAACTTTTTGA 59.235 30.769 14.70 0.00 44.99 2.69
462 463 7.281774 TGCAAGAATATGCCAAAACTTTTTGAA 59.718 29.630 14.70 4.59 44.99 2.69
463 464 8.127954 GCAAGAATATGCCAAAACTTTTTGAAA 58.872 29.630 14.70 4.28 45.40 2.69
478 479 8.865590 ACTTTTTGAAAAATATTGCGTGTAGT 57.134 26.923 3.28 0.00 0.00 2.73
479 480 8.964150 ACTTTTTGAAAAATATTGCGTGTAGTC 58.036 29.630 3.28 0.00 0.00 2.59
480 481 7.861176 TTTTGAAAAATATTGCGTGTAGTCC 57.139 32.000 0.00 0.00 0.00 3.85
481 482 6.561737 TTGAAAAATATTGCGTGTAGTCCA 57.438 33.333 0.00 0.00 0.00 4.02
482 483 6.751514 TGAAAAATATTGCGTGTAGTCCAT 57.248 33.333 0.00 0.00 0.00 3.41
483 484 6.781138 TGAAAAATATTGCGTGTAGTCCATC 58.219 36.000 0.00 0.00 0.00 3.51
484 485 5.403897 AAAATATTGCGTGTAGTCCATCG 57.596 39.130 0.00 0.00 0.00 3.84
485 486 2.502213 TATTGCGTGTAGTCCATCGG 57.498 50.000 0.00 0.00 0.00 4.18
486 487 0.179084 ATTGCGTGTAGTCCATCGGG 60.179 55.000 0.00 0.00 0.00 5.14
487 488 2.585247 GCGTGTAGTCCATCGGGC 60.585 66.667 0.00 0.00 0.00 6.13
488 489 2.106332 CGTGTAGTCCATCGGGCC 59.894 66.667 0.00 0.00 0.00 5.80
489 490 2.504519 GTGTAGTCCATCGGGCCC 59.495 66.667 13.57 13.57 0.00 5.80
490 491 2.039787 TGTAGTCCATCGGGCCCA 59.960 61.111 24.92 9.77 0.00 5.36
491 492 2.063979 TGTAGTCCATCGGGCCCAG 61.064 63.158 24.92 15.19 0.00 4.45
492 493 2.445845 TAGTCCATCGGGCCCAGG 60.446 66.667 24.92 20.36 0.00 4.45
493 494 3.326385 TAGTCCATCGGGCCCAGGT 62.326 63.158 24.92 8.26 0.00 4.00
494 495 4.489771 GTCCATCGGGCCCAGGTG 62.490 72.222 24.92 20.27 0.00 4.00
503 504 2.679716 GCCCAGGTGCCTTGAGAT 59.320 61.111 0.00 0.00 0.00 2.75
504 505 1.452833 GCCCAGGTGCCTTGAGATC 60.453 63.158 0.00 0.00 0.00 2.75
505 506 1.153289 CCCAGGTGCCTTGAGATCG 60.153 63.158 0.00 0.00 0.00 3.69
506 507 1.817099 CCAGGTGCCTTGAGATCGC 60.817 63.158 0.00 0.00 0.00 4.58
507 508 1.817099 CAGGTGCCTTGAGATCGCC 60.817 63.158 0.00 0.00 0.00 5.54
508 509 1.992277 AGGTGCCTTGAGATCGCCT 60.992 57.895 0.00 0.00 36.02 5.52
509 510 0.687757 AGGTGCCTTGAGATCGCCTA 60.688 55.000 0.00 0.00 38.80 3.93
510 511 0.394565 GGTGCCTTGAGATCGCCTAT 59.605 55.000 0.00 0.00 0.00 2.57
511 512 1.506493 GTGCCTTGAGATCGCCTATG 58.494 55.000 0.00 0.00 0.00 2.23
512 513 0.250038 TGCCTTGAGATCGCCTATGC 60.250 55.000 0.00 0.00 0.00 3.14
513 514 0.034616 GCCTTGAGATCGCCTATGCT 59.965 55.000 0.00 0.00 34.43 3.79
514 515 1.793258 CCTTGAGATCGCCTATGCTG 58.207 55.000 0.00 0.00 34.43 4.41
515 516 1.342496 CCTTGAGATCGCCTATGCTGA 59.658 52.381 0.00 0.00 34.43 4.26
516 517 2.224137 CCTTGAGATCGCCTATGCTGAA 60.224 50.000 0.00 0.00 34.43 3.02
517 518 2.515926 TGAGATCGCCTATGCTGAAC 57.484 50.000 0.00 0.00 34.43 3.18
518 519 1.756538 TGAGATCGCCTATGCTGAACA 59.243 47.619 0.00 0.00 34.43 3.18
519 520 2.131183 GAGATCGCCTATGCTGAACAC 58.869 52.381 0.00 0.00 34.43 3.32
520 521 1.759445 AGATCGCCTATGCTGAACACT 59.241 47.619 0.00 0.00 34.43 3.55
521 522 1.863454 GATCGCCTATGCTGAACACTG 59.137 52.381 0.00 0.00 34.43 3.66
522 523 0.608130 TCGCCTATGCTGAACACTGT 59.392 50.000 0.00 0.00 34.43 3.55
523 524 1.002366 CGCCTATGCTGAACACTGTC 58.998 55.000 0.00 0.00 34.43 3.51
524 525 1.373570 GCCTATGCTGAACACTGTCC 58.626 55.000 0.00 0.00 33.53 4.02
525 526 1.339055 GCCTATGCTGAACACTGTCCA 60.339 52.381 0.00 0.00 33.53 4.02
526 527 2.625737 CCTATGCTGAACACTGTCCAG 58.374 52.381 0.00 0.00 0.00 3.86
527 528 2.625737 CTATGCTGAACACTGTCCAGG 58.374 52.381 0.00 0.00 0.00 4.45
528 529 0.607489 ATGCTGAACACTGTCCAGGC 60.607 55.000 0.00 0.00 0.00 4.85
529 530 1.968540 GCTGAACACTGTCCAGGCC 60.969 63.158 0.00 0.00 0.00 5.19
530 531 1.757306 CTGAACACTGTCCAGGCCT 59.243 57.895 0.00 0.00 0.00 5.19
531 532 0.109342 CTGAACACTGTCCAGGCCTT 59.891 55.000 0.00 0.00 0.00 4.35
532 533 1.347707 CTGAACACTGTCCAGGCCTTA 59.652 52.381 0.00 0.00 0.00 2.69
533 534 1.985159 TGAACACTGTCCAGGCCTTAT 59.015 47.619 0.00 0.00 0.00 1.73
534 535 2.375174 TGAACACTGTCCAGGCCTTATT 59.625 45.455 0.00 0.00 0.00 1.40
535 536 2.496899 ACACTGTCCAGGCCTTATTG 57.503 50.000 0.00 0.00 0.00 1.90
550 551 5.627780 GGCCTTATTGACGTTTAACTTTGTG 59.372 40.000 0.00 0.00 0.00 3.33
567 568 2.350134 GGAGTCACCCCCGAAACC 59.650 66.667 0.00 0.00 0.00 3.27
598 599 3.749064 TGCTCTGCTCGACGTCCC 61.749 66.667 10.58 0.00 0.00 4.46
649 654 4.963953 GCGAGCATTACATCAACAATACAC 59.036 41.667 0.00 0.00 0.00 2.90
675 680 9.106286 CGATGTATGTACATTGCAACAATAATC 57.894 33.333 14.77 5.84 46.20 1.75
676 681 9.949174 GATGTATGTACATTGCAACAATAATCA 57.051 29.630 14.77 0.00 46.20 2.57
677 682 9.734620 ATGTATGTACATTGCAACAATAATCAC 57.265 29.630 14.77 1.27 43.99 3.06
678 683 8.734386 TGTATGTACATTGCAACAATAATCACA 58.266 29.630 14.77 4.02 0.00 3.58
679 684 9.566530 GTATGTACATTGCAACAATAATCACAA 57.433 29.630 14.77 0.00 0.00 3.33
681 686 8.877808 TGTACATTGCAACAATAATCACAAAA 57.122 26.923 0.00 0.00 0.00 2.44
682 687 9.486497 TGTACATTGCAACAATAATCACAAAAT 57.514 25.926 0.00 0.00 0.00 1.82
683 688 9.956797 GTACATTGCAACAATAATCACAAAATC 57.043 29.630 0.00 0.00 0.00 2.17
684 689 8.031848 ACATTGCAACAATAATCACAAAATCC 57.968 30.769 0.00 0.00 0.00 3.01
685 690 7.879160 ACATTGCAACAATAATCACAAAATCCT 59.121 29.630 0.00 0.00 0.00 3.24
686 691 7.887996 TTGCAACAATAATCACAAAATCCTC 57.112 32.000 0.00 0.00 0.00 3.71
687 692 6.092092 TGCAACAATAATCACAAAATCCTCG 58.908 36.000 0.00 0.00 0.00 4.63
688 693 6.072230 TGCAACAATAATCACAAAATCCTCGA 60.072 34.615 0.00 0.00 0.00 4.04
689 694 6.806249 GCAACAATAATCACAAAATCCTCGAA 59.194 34.615 0.00 0.00 0.00 3.71
690 695 7.328249 GCAACAATAATCACAAAATCCTCGAAA 59.672 33.333 0.00 0.00 0.00 3.46
691 696 8.853345 CAACAATAATCACAAAATCCTCGAAAG 58.147 33.333 0.00 0.00 0.00 2.62
692 697 8.335532 ACAATAATCACAAAATCCTCGAAAGA 57.664 30.769 0.00 0.00 39.12 2.52
693 698 8.792633 ACAATAATCACAAAATCCTCGAAAGAA 58.207 29.630 0.00 0.00 41.32 2.52
694 699 9.624697 CAATAATCACAAAATCCTCGAAAGAAA 57.375 29.630 0.00 0.00 41.32 2.52
757 765 0.246635 ACATGACGAAGGAAGGGTCG 59.753 55.000 0.00 0.00 42.91 4.79
1047 1055 2.897350 GCGCCACTCCAGGTATGC 60.897 66.667 0.00 0.00 0.00 3.14
1048 1056 2.903357 CGCCACTCCAGGTATGCT 59.097 61.111 0.00 0.00 0.00 3.79
1049 1057 1.522355 CGCCACTCCAGGTATGCTG 60.522 63.158 0.00 0.00 0.00 4.41
1050 1058 1.604378 GCCACTCCAGGTATGCTGT 59.396 57.895 0.00 0.00 0.00 4.40
1051 1059 0.035056 GCCACTCCAGGTATGCTGTT 60.035 55.000 0.00 0.00 0.00 3.16
1075 1083 1.067635 GTTCCATTCCATGCTTGCGTT 60.068 47.619 0.00 0.00 0.00 4.84
1076 1084 0.527113 TCCATTCCATGCTTGCGTTG 59.473 50.000 0.00 0.00 0.00 4.10
1077 1085 1.079875 CCATTCCATGCTTGCGTTGC 61.080 55.000 0.00 0.00 0.00 4.17
1078 1086 1.153978 ATTCCATGCTTGCGTTGCG 60.154 52.632 0.00 0.00 0.00 4.85
1079 1087 1.865788 ATTCCATGCTTGCGTTGCGT 61.866 50.000 0.00 0.00 0.00 5.24
1081 1089 1.511887 CCATGCTTGCGTTGCGTAC 60.512 57.895 0.00 0.00 0.00 3.67
1083 1091 0.790495 CATGCTTGCGTTGCGTACTG 60.790 55.000 0.00 0.00 0.00 2.74
1114 1122 2.060284 TGTCACGCACGGTTATGTAAC 58.940 47.619 0.00 0.00 35.50 2.50
1117 1125 1.392168 CACGCACGGTTATGTAACTGG 59.608 52.381 14.38 6.36 44.75 4.00
1118 1126 1.273048 ACGCACGGTTATGTAACTGGA 59.727 47.619 14.38 0.00 44.75 3.86
1119 1127 1.657094 CGCACGGTTATGTAACTGGAC 59.343 52.381 14.38 6.48 44.75 4.02
1123 1131 2.277084 CGGTTATGTAACTGGACTGCC 58.723 52.381 4.21 0.00 38.57 4.85
1124 1132 2.354303 CGGTTATGTAACTGGACTGCCA 60.354 50.000 4.21 0.00 43.25 4.92
1125 1133 3.681594 CGGTTATGTAACTGGACTGCCAT 60.682 47.826 4.21 0.00 44.91 4.40
1128 1136 3.939740 ATGTAACTGGACTGCCATCAT 57.060 42.857 0.00 0.00 44.91 2.45
1129 1137 3.266510 TGTAACTGGACTGCCATCATC 57.733 47.619 0.00 0.00 44.91 2.92
1130 1138 2.840038 TGTAACTGGACTGCCATCATCT 59.160 45.455 0.00 0.00 44.91 2.90
1131 1139 2.414994 AACTGGACTGCCATCATCTG 57.585 50.000 0.00 0.00 44.91 2.90
1132 1140 1.283347 ACTGGACTGCCATCATCTGT 58.717 50.000 0.00 0.00 44.91 3.41
1133 1141 1.065636 ACTGGACTGCCATCATCTGTG 60.066 52.381 0.00 0.00 44.91 3.66
1134 1142 1.208776 CTGGACTGCCATCATCTGTGA 59.791 52.381 0.00 0.00 44.91 3.58
1135 1143 1.841919 TGGACTGCCATCATCTGTGAT 59.158 47.619 0.00 0.00 45.87 3.06
1136 1144 2.240414 TGGACTGCCATCATCTGTGATT 59.760 45.455 0.00 0.00 42.37 2.57
1281 1297 3.450817 TGACATGATCGGTGGAATGTAGT 59.549 43.478 0.00 0.00 33.51 2.73
1282 1298 4.081142 TGACATGATCGGTGGAATGTAGTT 60.081 41.667 0.00 0.00 33.51 2.24
1283 1299 4.191544 ACATGATCGGTGGAATGTAGTTG 58.808 43.478 0.00 0.00 31.63 3.16
1297 1313 0.533978 TAGTTGCTTGCTTGGTCGCA 60.534 50.000 0.00 0.00 38.31 5.10
1542 1560 0.520404 TCAAGTACGACTCCACGCTC 59.480 55.000 0.00 0.00 36.70 5.03
1593 1611 2.158959 CGACAACGCCATCTCCGTC 61.159 63.158 0.00 0.00 38.06 4.79
1929 1950 2.754552 CCCTCTGTCTCTCAAGTCTCAG 59.245 54.545 0.00 0.00 0.00 3.35
1946 1967 6.397272 AGTCTCAGCTGAATCTACTTCTTTG 58.603 40.000 18.85 0.98 34.75 2.77
2206 2231 2.732658 GTGTCCGTGGTCGACCTT 59.267 61.111 33.39 0.00 39.71 3.50
2586 2675 9.869757 TTTGTAATGAGAATTCAGAGTATCGAA 57.130 29.630 8.44 0.00 42.67 3.71
2763 2857 7.329471 TCTGATGTAGAATTCAACTCGTTCTTG 59.671 37.037 8.44 0.00 34.33 3.02
2764 2858 6.368791 TGATGTAGAATTCAACTCGTTCTTGG 59.631 38.462 8.44 0.00 34.33 3.61
2765 2859 5.849510 TGTAGAATTCAACTCGTTCTTGGA 58.150 37.500 8.44 0.00 34.33 3.53
2766 2860 6.464222 TGTAGAATTCAACTCGTTCTTGGAT 58.536 36.000 8.44 0.00 34.33 3.41
2767 2861 6.934645 TGTAGAATTCAACTCGTTCTTGGATT 59.065 34.615 8.44 0.00 34.33 3.01
2768 2862 6.884280 AGAATTCAACTCGTTCTTGGATTT 57.116 33.333 8.44 0.00 28.54 2.17
2769 2863 6.672147 AGAATTCAACTCGTTCTTGGATTTG 58.328 36.000 8.44 0.00 28.54 2.32
2777 2871 3.818773 TCGTTCTTGGATTTGGAACCTTC 59.181 43.478 0.00 0.00 36.85 3.46
2796 2890 6.263754 ACCTTCCCATCATTTTCACCTTTAT 58.736 36.000 0.00 0.00 0.00 1.40
2825 2921 9.661187 CTATCTAAAAATGCATGATCAACTCAC 57.339 33.333 0.00 0.00 36.48 3.51
3013 3112 5.752472 CACAAGATAAGAGATTGCGATCTGT 59.248 40.000 21.56 14.64 42.66 3.41
3017 3116 0.174389 AGAGATTGCGATCTGTGCGT 59.826 50.000 21.56 0.00 42.66 5.24
3019 3118 0.108662 AGATTGCGATCTGTGCGTCA 60.109 50.000 16.02 0.00 41.09 4.35
3089 3191 5.584442 ACTTTTGTGGGTTGTATTTTCGTC 58.416 37.500 0.00 0.00 0.00 4.20
3139 3245 3.890756 CCTATATGCTTGGTGCCAATCAA 59.109 43.478 10.91 2.97 42.00 2.57
3142 3248 1.412079 TGCTTGGTGCCAATCAAAGT 58.588 45.000 3.91 0.00 42.00 2.66
3172 3278 8.717717 TGAGTGGTCAAGAATATATGGAAATCT 58.282 33.333 0.00 0.00 0.00 2.40
3199 3305 6.173339 AGGGATAAATATTGCAGACCATACG 58.827 40.000 0.00 0.00 0.00 3.06
3200 3306 5.354234 GGGATAAATATTGCAGACCATACGG 59.646 44.000 0.00 0.00 38.77 4.02
3321 3464 2.445905 ACTCAATGCCCCATGATGAGAT 59.554 45.455 11.72 0.00 39.85 2.75
3418 3566 8.553153 TGATATATTGAACTTCAACCAGGGTTA 58.447 33.333 6.35 0.00 39.45 2.85
3468 3616 5.128499 TGATGGCACTTTCAGGAAAAGAAAA 59.872 36.000 4.64 0.00 46.18 2.29
3477 3625 8.678199 ACTTTCAGGAAAAGAAAAACTACTCTG 58.322 33.333 4.64 0.00 46.18 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.114411 TTGCCTTCGTGGGTTCCC 59.886 61.111 0.12 0.12 36.00 3.97
3 4 1.515521 CTGGTTGCCTTCGTGGGTTC 61.516 60.000 0.05 0.00 36.00 3.62
4 5 1.528309 CTGGTTGCCTTCGTGGGTT 60.528 57.895 0.05 0.00 36.00 4.11
5 6 1.412453 TACTGGTTGCCTTCGTGGGT 61.412 55.000 0.05 0.00 36.00 4.51
6 7 0.673644 CTACTGGTTGCCTTCGTGGG 60.674 60.000 0.05 0.00 36.00 4.61
10 11 0.323629 TTCCCTACTGGTTGCCTTCG 59.676 55.000 0.00 0.00 34.77 3.79
11 12 1.822506 GTTCCCTACTGGTTGCCTTC 58.177 55.000 0.00 0.00 34.77 3.46
13 14 0.834687 TCGTTCCCTACTGGTTGCCT 60.835 55.000 0.00 0.00 34.77 4.75
14 15 0.672711 GTCGTTCCCTACTGGTTGCC 60.673 60.000 0.00 0.00 34.77 4.52
15 16 1.012486 CGTCGTTCCCTACTGGTTGC 61.012 60.000 0.00 0.00 34.77 4.17
16 17 0.599558 TCGTCGTTCCCTACTGGTTG 59.400 55.000 0.00 0.00 34.77 3.77
18 19 2.425143 TATCGTCGTTCCCTACTGGT 57.575 50.000 0.00 0.00 34.77 4.00
19 20 2.095869 CGATATCGTCGTTCCCTACTGG 60.096 54.545 17.06 0.00 45.19 4.00
20 21 3.184649 CGATATCGTCGTTCCCTACTG 57.815 52.381 17.06 0.00 45.19 2.74
31 32 1.728426 CCCCGTTCGCGATATCGTC 60.728 63.158 24.99 16.25 44.71 4.20
32 33 1.727511 TTCCCCGTTCGCGATATCGT 61.728 55.000 24.99 0.00 44.71 3.73
33 34 1.002250 CTTCCCCGTTCGCGATATCG 61.002 60.000 20.79 20.79 44.71 2.92
34 35 1.282930 GCTTCCCCGTTCGCGATATC 61.283 60.000 10.88 2.79 44.71 1.63
35 36 1.300697 GCTTCCCCGTTCGCGATAT 60.301 57.895 10.88 0.00 44.71 1.63
36 37 2.105528 GCTTCCCCGTTCGCGATA 59.894 61.111 10.88 0.00 44.71 2.92
57 58 2.923605 AGTCCTTCTTTAGCGTCGAG 57.076 50.000 0.00 0.00 0.00 4.04
58 59 3.002042 CGATAGTCCTTCTTTAGCGTCGA 59.998 47.826 0.00 0.00 0.00 4.20
59 60 3.289911 CGATAGTCCTTCTTTAGCGTCG 58.710 50.000 0.00 0.00 0.00 5.12
75 76 3.165058 TGTTGCCTGCTCTTACGATAG 57.835 47.619 0.00 0.00 46.19 2.08
76 77 3.521560 CTTGTTGCCTGCTCTTACGATA 58.478 45.455 0.00 0.00 0.00 2.92
77 78 2.350522 CTTGTTGCCTGCTCTTACGAT 58.649 47.619 0.00 0.00 0.00 3.73
78 79 1.795768 CTTGTTGCCTGCTCTTACGA 58.204 50.000 0.00 0.00 0.00 3.43
79 80 0.166814 GCTTGTTGCCTGCTCTTACG 59.833 55.000 0.00 0.00 35.15 3.18
80 81 0.166814 CGCTTGTTGCCTGCTCTTAC 59.833 55.000 0.00 0.00 38.78 2.34
81 82 1.577328 GCGCTTGTTGCCTGCTCTTA 61.577 55.000 0.00 0.00 38.78 2.10
82 83 2.912624 GCGCTTGTTGCCTGCTCTT 61.913 57.895 0.00 0.00 38.78 2.85
83 84 3.360340 GCGCTTGTTGCCTGCTCT 61.360 61.111 0.00 0.00 38.78 4.09
84 85 4.748679 CGCGCTTGTTGCCTGCTC 62.749 66.667 5.56 0.00 38.78 4.26
108 109 1.962306 TTACGGCGGCAGTTGTTCC 60.962 57.895 11.71 0.00 0.00 3.62
109 110 1.205820 GTTACGGCGGCAGTTGTTC 59.794 57.895 11.71 0.00 0.00 3.18
110 111 2.255881 GGTTACGGCGGCAGTTGTT 61.256 57.895 11.71 0.00 0.00 2.83
111 112 2.667199 GGTTACGGCGGCAGTTGT 60.667 61.111 11.71 0.44 0.00 3.32
112 113 2.666862 TGGTTACGGCGGCAGTTG 60.667 61.111 11.71 0.00 0.00 3.16
113 114 2.667199 GTGGTTACGGCGGCAGTT 60.667 61.111 11.71 0.00 0.00 3.16
123 124 0.941542 TGCTCTTGTTGCGTGGTTAC 59.058 50.000 0.00 0.00 0.00 2.50
124 125 1.225855 CTGCTCTTGTTGCGTGGTTA 58.774 50.000 0.00 0.00 0.00 2.85
125 126 2.024918 CTGCTCTTGTTGCGTGGTT 58.975 52.632 0.00 0.00 0.00 3.67
126 127 2.546494 GCTGCTCTTGTTGCGTGGT 61.546 57.895 0.00 0.00 0.00 4.16
127 128 2.253452 GCTGCTCTTGTTGCGTGG 59.747 61.111 0.00 0.00 0.00 4.94
128 129 2.127496 CGCTGCTCTTGTTGCGTG 60.127 61.111 0.00 0.00 42.93 5.34
129 130 3.349006 CCGCTGCTCTTGTTGCGT 61.349 61.111 0.00 0.00 45.90 5.24
130 131 3.020026 CTCCGCTGCTCTTGTTGCG 62.020 63.158 0.00 0.00 46.74 4.85
131 132 1.669115 TCTCCGCTGCTCTTGTTGC 60.669 57.895 0.00 0.00 0.00 4.17
132 133 1.621301 CGTCTCCGCTGCTCTTGTTG 61.621 60.000 0.00 0.00 0.00 3.33
133 134 1.373497 CGTCTCCGCTGCTCTTGTT 60.373 57.895 0.00 0.00 0.00 2.83
134 135 2.259818 CGTCTCCGCTGCTCTTGT 59.740 61.111 0.00 0.00 0.00 3.16
135 136 1.803519 GTCGTCTCCGCTGCTCTTG 60.804 63.158 0.00 0.00 0.00 3.02
136 137 2.569134 GTCGTCTCCGCTGCTCTT 59.431 61.111 0.00 0.00 0.00 2.85
137 138 3.805307 CGTCGTCTCCGCTGCTCT 61.805 66.667 0.00 0.00 0.00 4.09
138 139 4.838486 CCGTCGTCTCCGCTGCTC 62.838 72.222 0.00 0.00 0.00 4.26
141 142 4.717629 TTGCCGTCGTCTCCGCTG 62.718 66.667 0.00 0.00 0.00 5.18
142 143 2.981977 TTTTTGCCGTCGTCTCCGCT 62.982 55.000 0.00 0.00 0.00 5.52
143 144 2.600475 TTTTTGCCGTCGTCTCCGC 61.600 57.895 0.00 0.00 0.00 5.54
144 145 3.632700 TTTTTGCCGTCGTCTCCG 58.367 55.556 0.00 0.00 0.00 4.63
159 160 2.483583 TGTCGCGCATTGTTCTTTTT 57.516 40.000 8.75 0.00 0.00 1.94
160 161 2.384382 CTTGTCGCGCATTGTTCTTTT 58.616 42.857 8.75 0.00 0.00 2.27
161 162 1.334960 CCTTGTCGCGCATTGTTCTTT 60.335 47.619 8.75 0.00 0.00 2.52
162 163 0.238289 CCTTGTCGCGCATTGTTCTT 59.762 50.000 8.75 0.00 0.00 2.52
163 164 1.577328 CCCTTGTCGCGCATTGTTCT 61.577 55.000 8.75 0.00 0.00 3.01
164 165 1.154225 CCCTTGTCGCGCATTGTTC 60.154 57.895 8.75 0.00 0.00 3.18
165 166 1.452145 AACCCTTGTCGCGCATTGTT 61.452 50.000 8.75 4.40 0.00 2.83
166 167 1.852067 GAACCCTTGTCGCGCATTGT 61.852 55.000 8.75 0.00 0.00 2.71
167 168 1.154225 GAACCCTTGTCGCGCATTG 60.154 57.895 8.75 0.00 0.00 2.82
168 169 2.677003 CGAACCCTTGTCGCGCATT 61.677 57.895 8.75 0.00 0.00 3.56
169 170 3.118454 CGAACCCTTGTCGCGCAT 61.118 61.111 8.75 0.00 0.00 4.73
181 182 0.534203 TTCTCTGTTGTGGGCGAACC 60.534 55.000 0.00 0.00 40.81 3.62
182 183 1.305201 TTTCTCTGTTGTGGGCGAAC 58.695 50.000 0.00 0.00 0.00 3.95
183 184 2.045561 TTTTCTCTGTTGTGGGCGAA 57.954 45.000 0.00 0.00 0.00 4.70
184 185 1.673920 GTTTTTCTCTGTTGTGGGCGA 59.326 47.619 0.00 0.00 0.00 5.54
185 186 1.403679 TGTTTTTCTCTGTTGTGGGCG 59.596 47.619 0.00 0.00 0.00 6.13
186 187 2.687935 TCTGTTTTTCTCTGTTGTGGGC 59.312 45.455 0.00 0.00 0.00 5.36
187 188 4.823989 AGATCTGTTTTTCTCTGTTGTGGG 59.176 41.667 0.00 0.00 0.00 4.61
188 189 5.528690 TGAGATCTGTTTTTCTCTGTTGTGG 59.471 40.000 0.00 0.00 39.30 4.17
189 190 6.609237 TGAGATCTGTTTTTCTCTGTTGTG 57.391 37.500 0.00 0.00 39.30 3.33
190 191 7.630242 TTTGAGATCTGTTTTTCTCTGTTGT 57.370 32.000 0.00 0.00 39.30 3.32
191 192 7.970061 TGTTTTGAGATCTGTTTTTCTCTGTTG 59.030 33.333 0.00 0.00 39.30 3.33
192 193 8.055279 TGTTTTGAGATCTGTTTTTCTCTGTT 57.945 30.769 0.00 0.00 39.30 3.16
193 194 7.554118 TCTGTTTTGAGATCTGTTTTTCTCTGT 59.446 33.333 0.00 0.00 39.30 3.41
194 195 7.923888 TCTGTTTTGAGATCTGTTTTTCTCTG 58.076 34.615 0.00 0.00 39.30 3.35
195 196 8.688747 ATCTGTTTTGAGATCTGTTTTTCTCT 57.311 30.769 0.00 0.00 39.30 3.10
196 197 8.562892 TGATCTGTTTTGAGATCTGTTTTTCTC 58.437 33.333 0.00 0.00 45.98 2.87
197 198 8.455903 TGATCTGTTTTGAGATCTGTTTTTCT 57.544 30.769 0.00 0.00 45.98 2.52
198 199 9.178427 CTTGATCTGTTTTGAGATCTGTTTTTC 57.822 33.333 0.00 0.00 45.98 2.29
199 200 8.906867 TCTTGATCTGTTTTGAGATCTGTTTTT 58.093 29.630 0.00 0.00 45.98 1.94
200 201 8.455903 TCTTGATCTGTTTTGAGATCTGTTTT 57.544 30.769 0.00 0.00 45.98 2.43
201 202 7.174599 CCTCTTGATCTGTTTTGAGATCTGTTT 59.825 37.037 0.00 0.00 45.98 2.83
202 203 6.654161 CCTCTTGATCTGTTTTGAGATCTGTT 59.346 38.462 0.00 0.00 45.98 3.16
203 204 6.171921 CCTCTTGATCTGTTTTGAGATCTGT 58.828 40.000 0.00 0.00 45.98 3.41
204 205 6.171921 ACCTCTTGATCTGTTTTGAGATCTG 58.828 40.000 0.00 5.40 45.98 2.90
205 206 6.371595 ACCTCTTGATCTGTTTTGAGATCT 57.628 37.500 10.93 0.00 45.98 2.75
206 207 8.729805 AATACCTCTTGATCTGTTTTGAGATC 57.270 34.615 0.00 0.00 46.00 2.75
271 272 5.346181 TTCGGTTTCCCTTTGTGATTTTT 57.654 34.783 0.00 0.00 0.00 1.94
272 273 5.346181 TTTCGGTTTCCCTTTGTGATTTT 57.654 34.783 0.00 0.00 0.00 1.82
273 274 5.113383 GTTTTCGGTTTCCCTTTGTGATTT 58.887 37.500 0.00 0.00 0.00 2.17
274 275 4.442332 GGTTTTCGGTTTCCCTTTGTGATT 60.442 41.667 0.00 0.00 0.00 2.57
275 276 3.069016 GGTTTTCGGTTTCCCTTTGTGAT 59.931 43.478 0.00 0.00 0.00 3.06
276 277 2.427812 GGTTTTCGGTTTCCCTTTGTGA 59.572 45.455 0.00 0.00 0.00 3.58
277 278 2.796735 CGGTTTTCGGTTTCCCTTTGTG 60.797 50.000 0.00 0.00 34.75 3.33
278 279 1.406180 CGGTTTTCGGTTTCCCTTTGT 59.594 47.619 0.00 0.00 34.75 2.83
279 280 1.677052 TCGGTTTTCGGTTTCCCTTTG 59.323 47.619 0.00 0.00 39.77 2.77
280 281 2.055684 TCGGTTTTCGGTTTCCCTTT 57.944 45.000 0.00 0.00 39.77 3.11
281 282 2.055684 TTCGGTTTTCGGTTTCCCTT 57.944 45.000 0.00 0.00 39.77 3.95
282 283 2.055684 TTTCGGTTTTCGGTTTCCCT 57.944 45.000 0.00 0.00 39.77 4.20
283 284 3.243468 TGAATTTCGGTTTTCGGTTTCCC 60.243 43.478 0.00 0.00 39.77 3.97
284 285 3.732219 GTGAATTTCGGTTTTCGGTTTCC 59.268 43.478 0.00 0.00 39.77 3.13
285 286 3.419596 CGTGAATTTCGGTTTTCGGTTTC 59.580 43.478 0.00 0.00 39.77 2.78
286 287 3.364946 CGTGAATTTCGGTTTTCGGTTT 58.635 40.909 0.00 0.00 39.77 3.27
287 288 2.287129 CCGTGAATTTCGGTTTTCGGTT 60.287 45.455 12.74 0.00 42.62 4.44
288 289 1.264826 CCGTGAATTTCGGTTTTCGGT 59.735 47.619 12.74 0.00 42.62 4.69
289 290 1.400500 CCCGTGAATTTCGGTTTTCGG 60.400 52.381 17.39 0.00 45.63 4.30
290 291 1.532007 TCCCGTGAATTTCGGTTTTCG 59.468 47.619 17.39 6.24 45.63 3.46
291 292 2.809696 TCTCCCGTGAATTTCGGTTTTC 59.190 45.455 17.39 0.00 45.63 2.29
292 293 2.853705 TCTCCCGTGAATTTCGGTTTT 58.146 42.857 17.39 0.00 45.63 2.43
293 294 2.554370 TCTCCCGTGAATTTCGGTTT 57.446 45.000 17.39 0.00 45.63 3.27
294 295 2.423577 CTTCTCCCGTGAATTTCGGTT 58.576 47.619 17.39 0.00 45.63 4.44
295 296 1.944430 GCTTCTCCCGTGAATTTCGGT 60.944 52.381 17.39 0.00 45.63 4.69
296 297 0.727398 GCTTCTCCCGTGAATTTCGG 59.273 55.000 13.64 13.64 46.49 4.30
297 298 0.727398 GGCTTCTCCCGTGAATTTCG 59.273 55.000 0.00 0.00 0.00 3.46
298 299 0.727398 CGGCTTCTCCCGTGAATTTC 59.273 55.000 0.00 0.00 43.24 2.17
299 300 2.854522 CGGCTTCTCCCGTGAATTT 58.145 52.632 0.00 0.00 43.24 1.82
300 301 4.617875 CGGCTTCTCCCGTGAATT 57.382 55.556 0.00 0.00 43.24 2.17
327 328 4.059459 GTCCGCGCGTGACACTTG 62.059 66.667 32.27 16.76 32.91 3.16
345 346 1.002366 CCTGAGACTTTTCCGATGCG 58.998 55.000 0.00 0.00 0.00 4.73
346 347 2.275318 CTCCTGAGACTTTTCCGATGC 58.725 52.381 0.00 0.00 0.00 3.91
347 348 2.275318 GCTCCTGAGACTTTTCCGATG 58.725 52.381 0.00 0.00 0.00 3.84
348 349 1.134965 CGCTCCTGAGACTTTTCCGAT 60.135 52.381 0.00 0.00 0.00 4.18
349 350 0.243907 CGCTCCTGAGACTTTTCCGA 59.756 55.000 0.00 0.00 0.00 4.55
350 351 1.355066 GCGCTCCTGAGACTTTTCCG 61.355 60.000 0.00 0.00 0.00 4.30
351 352 0.036858 AGCGCTCCTGAGACTTTTCC 60.037 55.000 2.64 0.00 0.00 3.13
352 353 1.355005 GAGCGCTCCTGAGACTTTTC 58.645 55.000 27.22 0.00 0.00 2.29
353 354 0.036858 GGAGCGCTCCTGAGACTTTT 60.037 55.000 42.50 2.33 46.16 2.27
354 355 1.594310 GGAGCGCTCCTGAGACTTT 59.406 57.895 42.50 2.57 46.16 2.66
355 356 3.293702 GGAGCGCTCCTGAGACTT 58.706 61.111 42.50 3.20 46.16 3.01
369 370 3.767230 CAAGTGTCACGCGCGGAG 61.767 66.667 35.22 25.44 0.00 4.63
405 406 4.699522 AGGAACGCTCCCCGCAAC 62.700 66.667 0.00 0.00 43.64 4.17
406 407 4.388499 GAGGAACGCTCCCCGCAA 62.388 66.667 0.00 0.00 43.64 4.85
408 409 3.682292 ATTGAGGAACGCTCCCCGC 62.682 63.158 0.00 0.00 43.64 6.13
409 410 0.177141 TAATTGAGGAACGCTCCCCG 59.823 55.000 0.00 0.00 43.64 5.73
410 411 1.209747 ACTAATTGAGGAACGCTCCCC 59.790 52.381 0.00 0.00 43.64 4.81
411 412 2.093658 TCACTAATTGAGGAACGCTCCC 60.094 50.000 0.00 0.00 43.64 4.30
412 413 3.247006 TCACTAATTGAGGAACGCTCC 57.753 47.619 0.00 0.00 42.81 4.70
413 414 5.803020 AAATCACTAATTGAGGAACGCTC 57.197 39.130 0.00 0.00 37.77 5.03
414 415 5.619981 GCAAAATCACTAATTGAGGAACGCT 60.620 40.000 0.00 0.00 37.77 5.07
415 416 4.558860 GCAAAATCACTAATTGAGGAACGC 59.441 41.667 0.00 0.00 37.77 4.84
416 417 5.698832 TGCAAAATCACTAATTGAGGAACG 58.301 37.500 0.00 0.00 37.77 3.95
417 418 7.370383 TCTTGCAAAATCACTAATTGAGGAAC 58.630 34.615 0.00 0.00 37.77 3.62
418 419 7.523293 TCTTGCAAAATCACTAATTGAGGAA 57.477 32.000 0.00 0.00 37.77 3.36
419 420 7.523293 TTCTTGCAAAATCACTAATTGAGGA 57.477 32.000 0.00 0.00 37.77 3.71
422 423 9.304731 GCATATTCTTGCAAAATCACTAATTGA 57.695 29.630 0.00 0.00 42.31 2.57
423 424 8.545420 GGCATATTCTTGCAAAATCACTAATTG 58.455 33.333 0.00 0.00 44.59 2.32
424 425 8.259411 TGGCATATTCTTGCAAAATCACTAATT 58.741 29.630 0.00 0.00 44.59 1.40
425 426 7.784037 TGGCATATTCTTGCAAAATCACTAAT 58.216 30.769 0.00 0.00 44.59 1.73
426 427 7.167924 TGGCATATTCTTGCAAAATCACTAA 57.832 32.000 0.00 0.00 44.59 2.24
427 428 6.772360 TGGCATATTCTTGCAAAATCACTA 57.228 33.333 0.00 0.00 44.59 2.74
428 429 5.664294 TGGCATATTCTTGCAAAATCACT 57.336 34.783 0.00 0.00 44.59 3.41
429 430 6.724694 TTTGGCATATTCTTGCAAAATCAC 57.275 33.333 0.00 0.00 39.91 3.06
430 431 6.935771 AGTTTTGGCATATTCTTGCAAAATCA 59.064 30.769 0.00 0.00 43.26 2.57
431 432 7.368480 AGTTTTGGCATATTCTTGCAAAATC 57.632 32.000 0.00 0.67 43.26 2.17
432 433 7.748691 AAGTTTTGGCATATTCTTGCAAAAT 57.251 28.000 0.00 6.37 43.26 1.82
433 434 7.565323 AAAGTTTTGGCATATTCTTGCAAAA 57.435 28.000 0.00 0.00 42.37 2.44
434 435 7.565323 AAAAGTTTTGGCATATTCTTGCAAA 57.435 28.000 0.00 0.00 44.59 3.68
435 436 7.281774 TCAAAAAGTTTTGGCATATTCTTGCAA 59.718 29.630 14.77 0.00 45.68 4.08
436 437 6.765036 TCAAAAAGTTTTGGCATATTCTTGCA 59.235 30.769 14.77 0.00 45.68 4.08
437 438 7.188468 TCAAAAAGTTTTGGCATATTCTTGC 57.812 32.000 14.77 0.00 45.68 4.01
445 446 9.247126 GCAATATTTTTCAAAAAGTTTTGGCAT 57.753 25.926 14.77 6.38 45.68 4.40
446 447 7.430502 CGCAATATTTTTCAAAAAGTTTTGGCA 59.569 29.630 14.77 2.02 45.68 4.92
447 448 7.430793 ACGCAATATTTTTCAAAAAGTTTTGGC 59.569 29.630 14.77 7.34 45.68 4.52
448 449 8.732227 CACGCAATATTTTTCAAAAAGTTTTGG 58.268 29.630 14.77 0.00 45.68 3.28
449 450 9.271738 ACACGCAATATTTTTCAAAAAGTTTTG 57.728 25.926 9.74 9.74 46.70 2.44
452 453 9.308318 ACTACACGCAATATTTTTCAAAAAGTT 57.692 25.926 1.08 0.00 0.00 2.66
453 454 8.865590 ACTACACGCAATATTTTTCAAAAAGT 57.134 26.923 1.08 0.00 0.00 2.66
454 455 8.424731 GGACTACACGCAATATTTTTCAAAAAG 58.575 33.333 1.08 0.00 0.00 2.27
455 456 7.921214 TGGACTACACGCAATATTTTTCAAAAA 59.079 29.630 0.00 0.00 0.00 1.94
456 457 7.426410 TGGACTACACGCAATATTTTTCAAAA 58.574 30.769 0.00 0.00 0.00 2.44
457 458 6.971602 TGGACTACACGCAATATTTTTCAAA 58.028 32.000 0.00 0.00 0.00 2.69
458 459 6.561737 TGGACTACACGCAATATTTTTCAA 57.438 33.333 0.00 0.00 0.00 2.69
459 460 6.456315 CGATGGACTACACGCAATATTTTTCA 60.456 38.462 0.00 0.00 0.00 2.69
460 461 5.901884 CGATGGACTACACGCAATATTTTTC 59.098 40.000 0.00 0.00 0.00 2.29
461 462 5.220777 CCGATGGACTACACGCAATATTTTT 60.221 40.000 0.00 0.00 0.00 1.94
462 463 4.272504 CCGATGGACTACACGCAATATTTT 59.727 41.667 0.00 0.00 0.00 1.82
463 464 3.807622 CCGATGGACTACACGCAATATTT 59.192 43.478 0.00 0.00 0.00 1.40
464 465 3.390135 CCGATGGACTACACGCAATATT 58.610 45.455 0.00 0.00 0.00 1.28
465 466 2.288825 CCCGATGGACTACACGCAATAT 60.289 50.000 0.00 0.00 0.00 1.28
466 467 1.067974 CCCGATGGACTACACGCAATA 59.932 52.381 0.00 0.00 0.00 1.90
467 468 0.179084 CCCGATGGACTACACGCAAT 60.179 55.000 0.00 0.00 0.00 3.56
468 469 1.216977 CCCGATGGACTACACGCAA 59.783 57.895 0.00 0.00 0.00 4.85
469 470 2.889617 CCCGATGGACTACACGCA 59.110 61.111 0.00 0.00 0.00 5.24
470 471 2.585247 GCCCGATGGACTACACGC 60.585 66.667 0.00 0.00 0.00 5.34
471 472 2.106332 GGCCCGATGGACTACACG 59.894 66.667 0.00 0.00 36.35 4.49
472 473 2.311688 CTGGGCCCGATGGACTACAC 62.312 65.000 19.37 0.00 40.82 2.90
473 474 2.039787 TGGGCCCGATGGACTACA 59.960 61.111 19.37 0.00 40.82 2.74
474 475 2.808206 CCTGGGCCCGATGGACTAC 61.808 68.421 19.37 0.00 40.82 2.73
475 476 2.445845 CCTGGGCCCGATGGACTA 60.446 66.667 19.37 0.00 40.82 2.59
476 477 4.741239 ACCTGGGCCCGATGGACT 62.741 66.667 28.27 9.75 40.82 3.85
477 478 4.489771 CACCTGGGCCCGATGGAC 62.490 72.222 28.27 0.64 39.96 4.02
486 487 1.452833 GATCTCAAGGCACCTGGGC 60.453 63.158 0.00 0.00 43.80 5.36
487 488 1.153289 CGATCTCAAGGCACCTGGG 60.153 63.158 0.00 0.00 0.00 4.45
488 489 1.817099 GCGATCTCAAGGCACCTGG 60.817 63.158 0.00 0.00 0.00 4.45
489 490 1.817099 GGCGATCTCAAGGCACCTG 60.817 63.158 0.00 0.00 0.00 4.00
490 491 0.687757 TAGGCGATCTCAAGGCACCT 60.688 55.000 0.00 0.00 35.18 4.00
491 492 0.394565 ATAGGCGATCTCAAGGCACC 59.605 55.000 0.00 0.00 35.18 5.01
492 493 1.506493 CATAGGCGATCTCAAGGCAC 58.494 55.000 0.00 0.00 35.18 5.01
493 494 0.250038 GCATAGGCGATCTCAAGGCA 60.250 55.000 0.00 0.00 35.18 4.75
494 495 2.537863 GCATAGGCGATCTCAAGGC 58.462 57.895 0.00 0.00 0.00 4.35
505 506 1.339055 TGGACAGTGTTCAGCATAGGC 60.339 52.381 0.00 0.00 41.61 3.93
506 507 2.625737 CTGGACAGTGTTCAGCATAGG 58.374 52.381 18.64 0.00 32.01 2.57
507 508 2.625737 CCTGGACAGTGTTCAGCATAG 58.374 52.381 24.19 8.42 37.81 2.23
508 509 1.339055 GCCTGGACAGTGTTCAGCATA 60.339 52.381 24.19 0.00 37.81 3.14
509 510 0.607489 GCCTGGACAGTGTTCAGCAT 60.607 55.000 24.19 0.00 37.81 3.79
510 511 1.227943 GCCTGGACAGTGTTCAGCA 60.228 57.895 24.19 0.00 37.81 4.41
511 512 1.968540 GGCCTGGACAGTGTTCAGC 60.969 63.158 24.19 18.63 37.81 4.26
512 513 0.109342 AAGGCCTGGACAGTGTTCAG 59.891 55.000 22.88 22.88 38.79 3.02
513 514 1.429930 TAAGGCCTGGACAGTGTTCA 58.570 50.000 5.69 3.69 0.00 3.18
514 515 2.749621 CAATAAGGCCTGGACAGTGTTC 59.250 50.000 5.69 0.00 0.00 3.18
515 516 2.375174 TCAATAAGGCCTGGACAGTGTT 59.625 45.455 5.69 0.00 0.00 3.32
516 517 1.985159 TCAATAAGGCCTGGACAGTGT 59.015 47.619 5.69 0.00 0.00 3.55
517 518 2.359900 GTCAATAAGGCCTGGACAGTG 58.640 52.381 5.69 1.65 0.00 3.66
518 519 1.066143 CGTCAATAAGGCCTGGACAGT 60.066 52.381 5.69 0.00 0.00 3.55
519 520 1.066143 ACGTCAATAAGGCCTGGACAG 60.066 52.381 5.69 10.83 0.00 3.51
520 521 0.981183 ACGTCAATAAGGCCTGGACA 59.019 50.000 5.69 0.00 0.00 4.02
521 522 2.109425 AACGTCAATAAGGCCTGGAC 57.891 50.000 5.69 11.46 0.00 4.02
522 523 2.871096 AAACGTCAATAAGGCCTGGA 57.129 45.000 5.69 0.00 0.00 3.86
523 524 4.007659 AGTTAAACGTCAATAAGGCCTGG 58.992 43.478 5.69 0.00 0.00 4.45
524 525 5.622770 AAGTTAAACGTCAATAAGGCCTG 57.377 39.130 5.69 0.00 0.00 4.85
525 526 5.533528 ACAAAGTTAAACGTCAATAAGGCCT 59.466 36.000 0.00 0.00 0.00 5.19
526 527 5.627780 CACAAAGTTAAACGTCAATAAGGCC 59.372 40.000 0.00 0.00 0.00 5.19
527 528 5.627780 CCACAAAGTTAAACGTCAATAAGGC 59.372 40.000 0.00 0.00 0.00 4.35
528 529 6.961576 TCCACAAAGTTAAACGTCAATAAGG 58.038 36.000 0.00 0.00 0.00 2.69
529 530 7.636326 ACTCCACAAAGTTAAACGTCAATAAG 58.364 34.615 0.00 0.00 0.00 1.73
530 531 7.280428 TGACTCCACAAAGTTAAACGTCAATAA 59.720 33.333 0.00 0.00 0.00 1.40
531 532 6.762187 TGACTCCACAAAGTTAAACGTCAATA 59.238 34.615 0.00 0.00 0.00 1.90
532 533 5.587043 TGACTCCACAAAGTTAAACGTCAAT 59.413 36.000 0.00 0.00 0.00 2.57
533 534 4.936411 TGACTCCACAAAGTTAAACGTCAA 59.064 37.500 0.00 0.00 0.00 3.18
534 535 4.330620 GTGACTCCACAAAGTTAAACGTCA 59.669 41.667 0.00 0.00 42.72 4.35
535 536 4.260497 GGTGACTCCACAAAGTTAAACGTC 60.260 45.833 0.00 0.00 44.93 4.34
598 599 2.509052 TATTCTGCGTTCCATCCTCG 57.491 50.000 0.00 0.00 0.00 4.63
649 654 9.106286 GATTATTGTTGCAATGTACATACATCG 57.894 33.333 9.21 0.00 45.55 3.84
757 765 5.100943 GGCTTTTCTCTTCTTCATTCATGC 58.899 41.667 0.00 0.00 0.00 4.06
1075 1083 0.107831 AAACAGGGAAGCAGTACGCA 59.892 50.000 11.30 0.00 46.13 5.24
1076 1084 0.517316 CAAACAGGGAAGCAGTACGC 59.483 55.000 2.08 2.08 42.91 4.42
1077 1085 1.798813 GACAAACAGGGAAGCAGTACG 59.201 52.381 0.00 0.00 0.00 3.67
1078 1086 2.548480 GTGACAAACAGGGAAGCAGTAC 59.452 50.000 0.00 0.00 0.00 2.73
1079 1087 2.805295 CGTGACAAACAGGGAAGCAGTA 60.805 50.000 0.00 0.00 0.00 2.74
1081 1089 0.588252 CGTGACAAACAGGGAAGCAG 59.412 55.000 0.00 0.00 0.00 4.24
1083 1091 1.282875 GCGTGACAAACAGGGAAGC 59.717 57.895 0.00 0.00 35.28 3.86
1114 1122 3.684697 AATCACAGATGATGGCAGTCCAG 60.685 47.826 0.00 0.00 45.26 3.86
1117 1125 4.701765 AGTAATCACAGATGATGGCAGTC 58.298 43.478 0.00 0.00 45.26 3.51
1118 1126 4.701765 GAGTAATCACAGATGATGGCAGT 58.298 43.478 0.00 0.00 45.26 4.40
1119 1127 3.739810 CGAGTAATCACAGATGATGGCAG 59.260 47.826 0.00 0.00 45.26 4.85
1123 1131 5.776744 TGGATCGAGTAATCACAGATGATG 58.223 41.667 0.00 0.00 45.26 3.07
1125 1133 4.279420 CCTGGATCGAGTAATCACAGATGA 59.721 45.833 3.90 0.00 39.83 2.92
1128 1136 2.959030 CCCTGGATCGAGTAATCACAGA 59.041 50.000 3.90 0.00 31.21 3.41
1129 1137 2.036475 CCCCTGGATCGAGTAATCACAG 59.964 54.545 3.90 0.00 0.00 3.66
1130 1138 2.039418 CCCCTGGATCGAGTAATCACA 58.961 52.381 3.90 0.00 0.00 3.58
1131 1139 1.344763 CCCCCTGGATCGAGTAATCAC 59.655 57.143 3.90 0.00 0.00 3.06
1132 1140 1.717032 CCCCCTGGATCGAGTAATCA 58.283 55.000 3.90 0.00 0.00 2.57
1297 1313 2.438975 CACACGCTCCCATGGCAT 60.439 61.111 6.09 0.00 0.00 4.40
1476 1494 1.715585 GGTGTCGTTGATGGCGATG 59.284 57.895 0.00 0.00 40.59 3.84
1593 1611 1.361668 CCTTGATCACCTTGCCGTCG 61.362 60.000 0.00 0.00 0.00 5.12
1650 1668 1.738346 CGAGGTCGATGCCCATCTCA 61.738 60.000 6.69 0.00 43.02 3.27
1929 1950 9.640963 TTAGTTACTCAAAGAAGTAGATTCAGC 57.359 33.333 0.00 0.00 40.67 4.26
2206 2231 1.053835 TCTTGGAGACCTGCACCACA 61.054 55.000 0.00 0.00 36.95 4.17
2769 2863 3.195610 GGTGAAAATGATGGGAAGGTTCC 59.804 47.826 0.00 0.00 46.82 3.62
2777 2871 5.981174 AGCAATAAAGGTGAAAATGATGGG 58.019 37.500 0.00 0.00 0.00 4.00
2788 2882 9.754382 ATGCATTTTTAGATAGCAATAAAGGTG 57.246 29.630 0.00 0.00 38.85 4.00
2796 2890 8.689061 AGTTGATCATGCATTTTTAGATAGCAA 58.311 29.630 0.00 0.00 38.85 3.91
2808 2904 5.970317 TCTTTGTGAGTTGATCATGCATT 57.030 34.783 0.00 0.00 40.92 3.56
2825 2921 6.970043 TCGTGTATGGTTCAAACTTTTCTTTG 59.030 34.615 0.00 0.00 33.14 2.77
2883 2981 6.008960 TCCCTTAAATTTTGCAATTGCCATT 58.991 32.000 26.94 18.33 41.18 3.16
3013 3112 0.981183 ATCCACCTAGGTTTGACGCA 59.019 50.000 13.15 0.00 39.02 5.24
3017 3116 2.092429 GCCATCATCCACCTAGGTTTGA 60.092 50.000 13.15 15.72 39.02 2.69
3019 3118 1.922447 TGCCATCATCCACCTAGGTTT 59.078 47.619 13.15 0.00 39.02 3.27
3078 3180 3.868661 CCATGATGTCCGACGAAAATACA 59.131 43.478 0.00 0.00 0.00 2.29
3139 3245 3.627395 TTCTTGACCACTCACACACTT 57.373 42.857 0.00 0.00 0.00 3.16
3142 3248 6.156083 TCCATATATTCTTGACCACTCACACA 59.844 38.462 0.00 0.00 0.00 3.72
3172 3278 6.012337 TGGTCTGCAATATTTATCCCTCAA 57.988 37.500 0.00 0.00 0.00 3.02
3381 3529 9.604626 GAAGTTCAATATATCATGTTAGCTTGC 57.395 33.333 0.00 0.00 0.00 4.01
3418 3566 5.023533 AGCGTATGTAGTGTCATCCAAAT 57.976 39.130 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.