Multiple sequence alignment - TraesCS2B01G337600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G337600 chr2B 100.000 2918 0 0 1 2918 482337294 482340211 0.000000e+00 5389
1 TraesCS2B01G337600 chr2B 94.301 579 33 0 134 712 482338005 482337427 0.000000e+00 887
2 TraesCS2B01G337600 chr2A 89.570 1975 166 13 413 2358 545799813 545801776 0.000000e+00 2470
3 TraesCS2B01G337600 chr2A 89.891 366 27 5 2522 2879 545802560 545802923 2.050000e-126 462
4 TraesCS2B01G337600 chr2A 89.051 274 28 2 140 413 545800104 545799833 3.600000e-89 339
5 TraesCS2B01G337600 chr2A 88.889 135 15 0 2349 2483 545802429 545802563 1.800000e-37 167
6 TraesCS2B01G337600 chr2D 90.276 1851 154 8 413 2245 406409603 406411445 0.000000e+00 2398
7 TraesCS2B01G337600 chr2D 91.429 280 21 2 137 416 406409894 406409618 5.900000e-102 381
8 TraesCS2B01G337600 chr2D 91.228 114 10 0 9 122 406409286 406409399 3.890000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G337600 chr2B 482337294 482340211 2917 False 5389 5389 100.000 1 2918 1 chr2B.!!$F1 2917
1 TraesCS2B01G337600 chr2B 482337427 482338005 578 True 887 887 94.301 134 712 1 chr2B.!!$R1 578
2 TraesCS2B01G337600 chr2A 545799813 545802923 3110 False 1033 2470 89.450 413 2879 3 chr2A.!!$F1 2466
3 TraesCS2B01G337600 chr2D 406409286 406411445 2159 False 1277 2398 90.752 9 2245 2 chr2D.!!$F1 2236

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.320771 CACAGTCTGTAGGGTGTGCC 60.321 60.000 4.85 0.0 34.36 5.01 F
400 413 3.217599 TGATACAAGAGAGCACACGTC 57.782 47.619 0.00 0.0 0.00 4.34 F
1205 1245 1.212935 ACCTGAACCTACCATGATGCC 59.787 52.381 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1086 1126 0.178981 ACACTGGCATGGCTCTTGTT 60.179 50.000 21.08 3.42 0.0 2.83 R
1511 1551 0.549950 ACCATCCTCCAATGCTCCAG 59.450 55.000 0.00 0.00 0.0 3.86 R
2853 3588 1.262950 TGCGTTTGGATTGAGAACACG 59.737 47.619 0.00 0.00 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 2.419673 TGAAACAAGTGTGCACAGTCTG 59.580 45.455 26.79 24.83 0.00 3.51
105 106 2.113860 AACAAGTGTGCACAGTCTGT 57.886 45.000 26.79 25.38 0.00 3.41
110 111 0.393077 GTGTGCACAGTCTGTAGGGT 59.607 55.000 22.40 0.00 0.00 4.34
115 116 0.320771 CACAGTCTGTAGGGTGTGCC 60.321 60.000 4.85 0.00 34.36 5.01
341 354 9.783256 ATTAGTTTTCATATAACTTTCCAACGC 57.217 29.630 0.00 0.00 37.12 4.84
400 413 3.217599 TGATACAAGAGAGCACACGTC 57.782 47.619 0.00 0.00 0.00 4.34
446 484 8.691661 AACTAACATCACTTGTTTAGGAACAT 57.308 30.769 0.00 0.00 46.51 2.71
885 923 8.193953 TGCATGGATCTACTTATGTAAGATCA 57.806 34.615 18.74 11.61 36.36 2.92
886 924 8.090831 TGCATGGATCTACTTATGTAAGATCAC 58.909 37.037 18.74 13.19 36.36 3.06
948 988 5.857268 TCAAGCACTATCATAGCATAAGCA 58.143 37.500 0.00 0.00 45.49 3.91
973 1013 6.905736 TCTCTCTTCTCCATAGCTTCTTCTA 58.094 40.000 0.00 0.00 0.00 2.10
974 1014 6.770785 TCTCTCTTCTCCATAGCTTCTTCTAC 59.229 42.308 0.00 0.00 0.00 2.59
979 1019 8.375506 TCTTCTCCATAGCTTCTTCTACAAAAA 58.624 33.333 0.00 0.00 0.00 1.94
1041 1081 7.287235 TCCTACCCTAACAAAGTTAGATCTAGC 59.713 40.741 16.27 8.45 0.00 3.42
1042 1082 6.869206 ACCCTAACAAAGTTAGATCTAGCA 57.131 37.500 17.64 0.00 0.00 3.49
1089 1129 2.751259 GCATGAAGCATTGAGAGGAACA 59.249 45.455 0.00 0.00 44.79 3.18
1123 1163 6.048509 CCAGTGTTAAATGATATTTTGGCCC 58.951 40.000 0.00 0.00 0.00 5.80
1158 1198 1.634973 TCAGATTCACCTTCCATGGCA 59.365 47.619 6.96 0.00 0.00 4.92
1174 1214 1.251251 GGCAAACTCCTCACTTGCAT 58.749 50.000 8.15 0.00 45.77 3.96
1205 1245 1.212935 ACCTGAACCTACCATGATGCC 59.787 52.381 0.00 0.00 0.00 4.40
1207 1247 2.158564 CCTGAACCTACCATGATGCCAT 60.159 50.000 0.00 0.00 0.00 4.40
1214 1254 2.902705 ACCATGATGCCATTCAATGC 57.097 45.000 0.00 0.00 0.00 3.56
1220 1260 5.242171 CCATGATGCCATTCAATGCTAGTTA 59.758 40.000 0.00 0.00 0.00 2.24
1276 1316 3.649023 ACCACTACCACCACAATTGTCTA 59.351 43.478 8.48 0.00 0.00 2.59
1407 1447 1.541379 ACCCTTTGTGGAATTACGCC 58.459 50.000 0.00 0.00 38.35 5.68
1426 1466 2.826128 GCCGACTCCTATCATCATACCA 59.174 50.000 0.00 0.00 0.00 3.25
1432 1472 6.152831 CGACTCCTATCATCATACCAATACCA 59.847 42.308 0.00 0.00 0.00 3.25
1434 1474 6.787458 ACTCCTATCATCATACCAATACCACA 59.213 38.462 0.00 0.00 0.00 4.17
1474 1514 6.542821 TCTTTCACATCCTTACTCCAAACAT 58.457 36.000 0.00 0.00 0.00 2.71
1476 1516 7.606456 TCTTTCACATCCTTACTCCAAACATAC 59.394 37.037 0.00 0.00 0.00 2.39
1492 1532 9.535170 TCCAAACATACCCAAATTCTATTGTTA 57.465 29.630 0.00 0.00 0.00 2.41
1519 1559 4.348168 CCCACCTTAATACTACTGGAGCAT 59.652 45.833 0.00 0.00 0.00 3.79
1536 1576 4.464008 GAGCATTGGAGGATGGTTCAATA 58.536 43.478 0.00 0.00 37.83 1.90
1540 1580 6.044754 AGCATTGGAGGATGGTTCAATATCTA 59.955 38.462 0.00 0.00 34.29 1.98
1548 1588 6.006449 GGATGGTTCAATATCTAACATGCCT 58.994 40.000 0.00 0.00 0.00 4.75
1563 1603 0.181114 TGCCTACCATGCATGTCTCC 59.819 55.000 24.58 9.74 32.85 3.71
1592 1632 7.441458 GGTAAACTCGCTAACATATGGATTTCT 59.559 37.037 7.80 0.00 0.00 2.52
1595 1635 8.958119 AACTCGCTAACATATGGATTTCTTTA 57.042 30.769 7.80 0.00 0.00 1.85
1596 1636 8.366671 ACTCGCTAACATATGGATTTCTTTAC 57.633 34.615 7.80 0.00 0.00 2.01
1650 1690 9.897744 CCGAATAATATATTGCAACAACAGAAT 57.102 29.630 0.00 0.00 0.00 2.40
1696 1736 4.018490 TGACGCTTCTTATGGTGTACCTA 58.982 43.478 2.32 0.00 36.82 3.08
1712 1752 5.011840 GTGTACCTACCCCTATTTCTCCATC 59.988 48.000 0.00 0.00 0.00 3.51
1725 1765 1.839994 TCTCCATCCATGACAACCTCC 59.160 52.381 0.00 0.00 0.00 4.30
1726 1766 1.842562 CTCCATCCATGACAACCTCCT 59.157 52.381 0.00 0.00 0.00 3.69
1833 1873 6.210385 TGGGTAATTACACATGCAAGATTTGT 59.790 34.615 16.66 0.00 34.06 2.83
1846 1886 3.201726 AGATTTGTGGTCGCAAATTCG 57.798 42.857 19.33 0.00 45.68 3.34
1913 1953 7.898014 AAGAAAGGAAGAAACACCTACAAAT 57.102 32.000 0.00 0.00 35.25 2.32
1944 1987 3.216800 CATGTACTTGGACATCCCATGG 58.783 50.000 4.14 4.14 46.10 3.66
1966 2009 5.187687 GGTTACCATTCTCGGGACAAATAA 58.812 41.667 0.00 0.00 0.00 1.40
1983 2026 7.016361 ACAAATAATTCTACTAGCGCCAAAG 57.984 36.000 2.29 1.38 0.00 2.77
2109 2174 6.300354 ACAATAGAACCGTCTTTGTTTGAG 57.700 37.500 0.00 0.00 34.36 3.02
2250 2316 9.998106 TTCTAGAGCTAGTTAAGATGTTTGTTT 57.002 29.630 4.58 0.00 34.84 2.83
2254 2320 9.425577 AGAGCTAGTTAAGATGTTTGTTTCTAC 57.574 33.333 0.00 0.00 0.00 2.59
2318 2384 7.069208 TCCAAATAATGTGCCATATAAAGTGCA 59.931 33.333 0.00 0.00 0.00 4.57
2338 2404 7.731054 AGTGCAAAACCATCTAAACCATTTTA 58.269 30.769 0.00 0.00 0.00 1.52
2339 2405 8.374743 AGTGCAAAACCATCTAAACCATTTTAT 58.625 29.630 0.00 0.00 0.00 1.40
2372 3100 7.831193 AGTAGTATCATCATTGGCAAAAGTCTT 59.169 33.333 3.01 0.00 0.00 3.01
2385 3113 4.156556 GCAAAAGTCTTGCTATGACATGGA 59.843 41.667 2.48 0.00 41.87 3.41
2390 3118 3.250280 GTCTTGCTATGACATGGATGCTG 59.750 47.826 2.48 0.00 34.80 4.41
2407 3135 4.032960 TGCTGAATTGTGATTACCACCT 57.967 40.909 0.00 0.00 45.09 4.00
2410 3138 4.035675 GCTGAATTGTGATTACCACCTAGC 59.964 45.833 0.00 0.00 45.09 3.42
2411 3139 5.172687 TGAATTGTGATTACCACCTAGCA 57.827 39.130 0.00 0.00 45.09 3.49
2413 3141 6.007076 TGAATTGTGATTACCACCTAGCAAA 58.993 36.000 0.00 0.00 45.09 3.68
2415 3143 7.178274 TGAATTGTGATTACCACCTAGCAAATT 59.822 33.333 0.00 0.00 45.09 1.82
2464 3192 6.923012 TGAACTAGCACATAAATTGCACATT 58.077 32.000 0.00 0.00 42.83 2.71
2469 3197 5.345702 AGCACATAAATTGCACATTGCTAG 58.654 37.500 0.00 0.00 45.31 3.42
2475 3203 8.685427 ACATAAATTGCACATTGCTAGACATAA 58.315 29.630 0.00 0.00 45.31 1.90
2567 3295 9.620259 AAAAAGGAACATTATGCTTAACCAAAA 57.380 25.926 0.00 0.00 30.13 2.44
2568 3296 9.620259 AAAAGGAACATTATGCTTAACCAAAAA 57.380 25.926 0.00 0.00 30.13 1.94
2649 3377 7.595819 ATTGTGAAACCATAGGAGAAACAAA 57.404 32.000 0.00 0.00 34.36 2.83
2688 3416 5.871396 TTTTATGTTGGCAAGGTGGTTTA 57.129 34.783 0.00 0.00 0.00 2.01
2700 3428 3.898482 AGGTGGTTTATAGGTCATTGGC 58.102 45.455 0.00 0.00 0.00 4.52
2733 3461 6.942005 ACAATCACCACACTATTGATTCTTCA 59.058 34.615 0.00 0.00 37.78 3.02
2751 3479 7.642071 TTCTTCAAGAAAATGTTAGCAATGC 57.358 32.000 0.00 0.00 29.99 3.56
2816 3551 3.211045 TCACCTTAGGTTGCTTGTGTTC 58.789 45.455 0.00 0.00 31.02 3.18
2818 3553 2.949644 ACCTTAGGTTGCTTGTGTTCAC 59.050 45.455 0.00 0.00 27.29 3.18
2824 3559 4.494484 AGGTTGCTTGTGTTCACTTTTTC 58.506 39.130 4.59 0.00 0.00 2.29
2879 3614 3.420893 TCTCAATCCAAACGCAAAGGAT 58.579 40.909 0.00 0.00 43.77 3.24
2880 3615 3.440173 TCTCAATCCAAACGCAAAGGATC 59.560 43.478 0.00 0.00 41.15 3.36
2881 3616 2.491693 TCAATCCAAACGCAAAGGATCC 59.508 45.455 2.48 2.48 41.15 3.36
2882 3617 2.493278 CAATCCAAACGCAAAGGATCCT 59.507 45.455 9.02 9.02 41.15 3.24
2883 3618 2.286365 TCCAAACGCAAAGGATCCTT 57.714 45.000 21.89 21.89 37.98 3.36
2884 3619 1.885887 TCCAAACGCAAAGGATCCTTG 59.114 47.619 27.71 20.59 36.26 3.61
2885 3620 1.885887 CCAAACGCAAAGGATCCTTGA 59.114 47.619 27.71 0.00 36.26 3.02
2886 3621 2.295909 CCAAACGCAAAGGATCCTTGAA 59.704 45.455 27.71 0.00 36.26 2.69
2887 3622 3.243704 CCAAACGCAAAGGATCCTTGAAA 60.244 43.478 27.71 0.00 36.26 2.69
2888 3623 4.559153 CAAACGCAAAGGATCCTTGAAAT 58.441 39.130 27.71 9.27 36.26 2.17
2889 3624 4.871933 AACGCAAAGGATCCTTGAAATT 57.128 36.364 27.71 16.34 36.26 1.82
2890 3625 4.871933 ACGCAAAGGATCCTTGAAATTT 57.128 36.364 27.71 8.07 36.26 1.82
2891 3626 4.809673 ACGCAAAGGATCCTTGAAATTTC 58.190 39.130 27.71 11.41 36.26 2.17
2892 3627 4.176271 CGCAAAGGATCCTTGAAATTTCC 58.824 43.478 27.71 0.00 36.26 3.13
2893 3628 4.321899 CGCAAAGGATCCTTGAAATTTCCA 60.322 41.667 27.71 3.71 36.26 3.53
2894 3629 5.625197 CGCAAAGGATCCTTGAAATTTCCAT 60.625 40.000 27.71 4.94 36.26 3.41
2895 3630 6.175471 GCAAAGGATCCTTGAAATTTCCATT 58.825 36.000 27.71 4.39 36.26 3.16
2896 3631 6.656270 GCAAAGGATCCTTGAAATTTCCATTT 59.344 34.615 27.71 4.17 36.26 2.32
2897 3632 7.148356 GCAAAGGATCCTTGAAATTTCCATTTC 60.148 37.037 27.71 0.00 46.08 2.17
2898 3633 7.803487 AAGGATCCTTGAAATTTCCATTTCT 57.197 32.000 26.52 0.00 46.06 2.52
2899 3634 8.899887 AAGGATCCTTGAAATTTCCATTTCTA 57.100 30.769 26.52 1.64 46.06 2.10
2900 3635 9.498039 AAGGATCCTTGAAATTTCCATTTCTAT 57.502 29.630 26.52 0.00 46.06 1.98
2901 3636 8.921205 AGGATCCTTGAAATTTCCATTTCTATG 58.079 33.333 9.02 0.00 46.06 2.23
2902 3637 8.917088 GGATCCTTGAAATTTCCATTTCTATGA 58.083 33.333 15.48 4.99 46.06 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 5.415701 AGATCCATACAACTTGCGTGAATTT 59.584 36.000 0.00 0.00 0.00 1.82
29 30 3.567478 AGGGAGATCCATACAACTTGC 57.433 47.619 0.47 0.00 38.24 4.01
110 111 1.423584 TCTCTCTCACAAAGGGCACA 58.576 50.000 0.00 0.00 0.00 4.57
115 116 6.459066 TGTGTAATCTTCTCTCTCACAAAGG 58.541 40.000 0.00 0.00 32.66 3.11
116 117 7.601886 ACATGTGTAATCTTCTCTCTCACAAAG 59.398 37.037 0.00 0.00 37.74 2.77
341 354 5.508124 TTTGCGTTCAACAAAAGAAACTG 57.492 34.783 0.00 0.00 34.22 3.16
444 482 5.114081 TGATGATACAAGAGAGCACACATG 58.886 41.667 0.00 0.00 0.00 3.21
446 484 4.806640 TGATGATACAAGAGAGCACACA 57.193 40.909 0.00 0.00 0.00 3.72
898 936 6.881065 GCTTATGAGGATTATTGCATAGGTCA 59.119 38.462 0.00 0.00 0.00 4.02
899 937 7.108847 AGCTTATGAGGATTATTGCATAGGTC 58.891 38.462 0.00 0.00 0.00 3.85
948 988 6.376248 AGAAGAAGCTATGGAGAAGAGAGAT 58.624 40.000 0.00 0.00 0.00 2.75
979 1019 7.952671 TCCATAACTACTAGCAAGATCGAATT 58.047 34.615 0.00 0.00 0.00 2.17
980 1020 7.526142 TCCATAACTACTAGCAAGATCGAAT 57.474 36.000 0.00 0.00 0.00 3.34
981 1021 6.954487 TCCATAACTACTAGCAAGATCGAA 57.046 37.500 0.00 0.00 0.00 3.71
1041 1081 5.393461 GGGAGAAATGTAGGCATCACTTTTG 60.393 44.000 0.00 0.00 33.50 2.44
1042 1082 4.706962 GGGAGAAATGTAGGCATCACTTTT 59.293 41.667 0.00 0.00 33.50 2.27
1086 1126 0.178981 ACACTGGCATGGCTCTTGTT 60.179 50.000 21.08 3.42 0.00 2.83
1089 1129 2.584835 TTAACACTGGCATGGCTCTT 57.415 45.000 21.08 8.39 0.00 2.85
1123 1163 5.809562 GTGAATCTGATGGTAGTGACTCAAG 59.190 44.000 0.00 0.00 0.00 3.02
1158 1198 1.347707 TCGGATGCAAGTGAGGAGTTT 59.652 47.619 0.00 0.00 0.00 2.66
1174 1214 1.003839 GTTCAGGTGGTGCATCGGA 60.004 57.895 0.00 0.00 0.00 4.55
1205 1245 6.147581 GGCATCATGTAACTAGCATTGAATG 58.852 40.000 0.00 0.00 0.00 2.67
1207 1247 5.066375 GTGGCATCATGTAACTAGCATTGAA 59.934 40.000 0.00 0.00 0.00 2.69
1214 1254 3.872696 TGGTGTGGCATCATGTAACTAG 58.127 45.455 0.00 0.00 0.00 2.57
1220 1260 1.352017 TCTCTTGGTGTGGCATCATGT 59.648 47.619 0.00 0.00 0.00 3.21
1311 1351 1.072266 TGTTGGGCTGGGACACTATT 58.928 50.000 0.00 0.00 0.00 1.73
1369 1409 6.200878 AGGGTTTGAAAGGAAGTCTTCATA 57.799 37.500 14.49 0.00 33.94 2.15
1407 1447 6.152831 TGGTATTGGTATGATGATAGGAGTCG 59.847 42.308 0.00 0.00 0.00 4.18
1426 1466 3.392616 GGAGACTCCATGGATGTGGTATT 59.607 47.826 16.63 1.63 40.27 1.89
1452 1492 6.657541 GGTATGTTTGGAGTAAGGATGTGAAA 59.342 38.462 0.00 0.00 0.00 2.69
1474 1514 9.411189 GTGGGTATTAACAATAGAATTTGGGTA 57.589 33.333 0.00 0.00 0.00 3.69
1476 1516 7.563556 AGGTGGGTATTAACAATAGAATTTGGG 59.436 37.037 0.00 0.00 0.00 4.12
1492 1532 6.042897 GCTCCAGTAGTATTAAGGTGGGTATT 59.957 42.308 0.00 0.00 0.00 1.89
1506 1546 3.398318 TCCTCCAATGCTCCAGTAGTA 57.602 47.619 0.00 0.00 0.00 1.82
1511 1551 0.549950 ACCATCCTCCAATGCTCCAG 59.450 55.000 0.00 0.00 0.00 3.86
1519 1559 7.206789 TGTTAGATATTGAACCATCCTCCAA 57.793 36.000 0.00 0.00 0.00 3.53
1536 1576 3.862877 TGCATGGTAGGCATGTTAGAT 57.137 42.857 0.00 0.00 36.11 1.98
1548 1588 0.752658 CCTCGGAGACATGCATGGTA 59.247 55.000 29.41 7.96 0.00 3.25
1575 1615 8.994170 GGAGAGTAAAGAAATCCATATGTTAGC 58.006 37.037 1.24 0.00 0.00 3.09
1696 1736 3.395941 GTCATGGATGGAGAAATAGGGGT 59.604 47.826 0.00 0.00 0.00 4.95
1712 1752 3.454447 TGGTACATAGGAGGTTGTCATGG 59.546 47.826 0.00 0.00 0.00 3.66
1725 1765 7.210873 GGGTGTTATCTTCTCTTGGTACATAG 58.789 42.308 0.00 0.00 39.30 2.23
1726 1766 6.099269 GGGGTGTTATCTTCTCTTGGTACATA 59.901 42.308 0.00 0.00 39.30 2.29
1833 1873 1.463056 GATGTGACGAATTTGCGACCA 59.537 47.619 0.00 0.00 34.83 4.02
1846 1886 1.927895 CCGTAGGCTTGAGATGTGAC 58.072 55.000 0.00 0.00 46.14 3.67
1913 1953 4.288366 TGTCCAAGTACATGGGAGATCAAA 59.712 41.667 16.76 0.00 41.05 2.69
1944 1987 6.937436 ATTATTTGTCCCGAGAATGGTAAC 57.063 37.500 0.00 0.00 0.00 2.50
1966 2009 2.236395 ACCACTTTGGCGCTAGTAGAAT 59.764 45.455 7.64 0.00 42.67 2.40
2097 2162 5.751243 ACACATACCACTCAAACAAAGAC 57.249 39.130 0.00 0.00 0.00 3.01
2109 2174 4.640789 TGGAAACAACAACACATACCAC 57.359 40.909 0.00 0.00 37.44 4.16
2268 2334 9.887406 GGAAAATGTTATTGTACTTCGAAGAAA 57.113 29.630 31.08 20.42 45.90 2.52
2281 2347 8.944029 TGGCACATTATTTGGAAAATGTTATTG 58.056 29.630 0.00 0.00 42.22 1.90
2314 2380 6.859420 AAAATGGTTTAGATGGTTTTGCAC 57.141 33.333 0.00 0.00 0.00 4.57
2338 2404 7.931407 TGCCAATGATGATACTACTCGTTAAAT 59.069 33.333 0.00 0.00 0.00 1.40
2339 2405 7.269316 TGCCAATGATGATACTACTCGTTAAA 58.731 34.615 0.00 0.00 0.00 1.52
2358 2424 4.523943 TGTCATAGCAAGACTTTTGCCAAT 59.476 37.500 8.15 0.82 45.98 3.16
2359 2425 3.888323 TGTCATAGCAAGACTTTTGCCAA 59.112 39.130 8.15 0.00 45.98 4.52
2360 2426 3.485394 TGTCATAGCAAGACTTTTGCCA 58.515 40.909 8.15 0.00 45.98 4.92
2372 3100 3.564053 TTCAGCATCCATGTCATAGCA 57.436 42.857 0.00 0.00 0.00 3.49
2505 3233 9.982651 GAACAAGGTATATAGAAGAAGCATGTA 57.017 33.333 0.00 0.00 0.00 2.29
2506 3234 8.486210 TGAACAAGGTATATAGAAGAAGCATGT 58.514 33.333 0.00 0.00 0.00 3.21
2507 3235 8.893219 TGAACAAGGTATATAGAAGAAGCATG 57.107 34.615 0.00 0.00 0.00 4.06
2509 3237 9.330063 CAATGAACAAGGTATATAGAAGAAGCA 57.670 33.333 0.00 0.00 0.00 3.91
2510 3238 9.547753 TCAATGAACAAGGTATATAGAAGAAGC 57.452 33.333 0.00 0.00 0.00 3.86
2567 3295 9.372189 CTCCTTAGGGATTTGGATGATAATTTT 57.628 33.333 0.00 0.00 41.36 1.82
2568 3296 7.452813 GCTCCTTAGGGATTTGGATGATAATTT 59.547 37.037 0.00 0.00 41.36 1.82
2569 3297 6.950619 GCTCCTTAGGGATTTGGATGATAATT 59.049 38.462 0.00 0.00 41.36 1.40
2570 3298 6.488715 GCTCCTTAGGGATTTGGATGATAAT 58.511 40.000 0.00 0.00 41.36 1.28
2578 3306 3.395941 ACATAGGCTCCTTAGGGATTTGG 59.604 47.826 0.00 0.00 41.36 3.28
2598 3326 5.581126 AATCGGGTACGTATTTGTCTACA 57.419 39.130 0.00 0.00 41.85 2.74
2602 3330 8.482429 CAATAAGTAATCGGGTACGTATTTGTC 58.518 37.037 0.00 0.00 36.87 3.18
2661 3389 7.014988 ACCACCTTGCCAACATAAAATAATT 57.985 32.000 0.00 0.00 0.00 1.40
2662 3390 6.619329 ACCACCTTGCCAACATAAAATAAT 57.381 33.333 0.00 0.00 0.00 1.28
2679 3407 3.527665 AGCCAATGACCTATAAACCACCT 59.472 43.478 0.00 0.00 0.00 4.00
2688 3416 5.372343 TGTTCACATAGCCAATGACCTAT 57.628 39.130 3.77 0.00 39.07 2.57
2725 3453 8.378421 GCATTGCTAACATTTTCTTGAAGAATC 58.622 33.333 8.64 0.00 33.67 2.52
2733 3461 8.667076 AAGAAAAGCATTGCTAACATTTTCTT 57.333 26.923 27.00 27.00 41.60 2.52
2786 3521 4.762251 AGCAACCTAAGGTGAGATGTTTTC 59.238 41.667 0.00 0.00 35.34 2.29
2842 3577 3.452755 TGAGAACACGAGCTTGAGAAA 57.547 42.857 8.31 0.00 0.00 2.52
2847 3582 2.416747 TGGATTGAGAACACGAGCTTG 58.583 47.619 0.00 0.00 0.00 4.01
2849 3584 2.808543 GTTTGGATTGAGAACACGAGCT 59.191 45.455 0.00 0.00 0.00 4.09
2851 3586 2.411547 GCGTTTGGATTGAGAACACGAG 60.412 50.000 0.00 0.00 0.00 4.18
2852 3587 1.529438 GCGTTTGGATTGAGAACACGA 59.471 47.619 0.00 0.00 0.00 4.35
2853 3588 1.262950 TGCGTTTGGATTGAGAACACG 59.737 47.619 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.