>input_sequence_65463
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-------------------------------------------------------------------------------A
TGGATCCTAATGGCTCCTACCCTAACAAAGTTAGATCTAGCAAAAGTGATGCCTACATTTCTCCCTTGCATGAAGCATTG
AGAGGAACAAGAGCCATGCCAGTGTTAAATGATATTTTGGCCCTTGAGTCACTACCATCAGATTCACCTTCCATGGCAAA
CTCCTCACTTGCATCCGATGCACCACCTGAACCTACCATGATGCCATTCAATGCTAGTTACATGATGCCACACCAAGAGA
ATGTAGGCCTAGCACCACTACCACCACAATTGTCTAATACAATTATTAATCCTTTATCCATGGTTAATACAATAGTGTCC
CAGCCCAACAATGAGGAAATCCATCAAGATGAACATGAAATGTTCAGGTATGAAGACTTCCTTTCAAACCCTTTGTGGAA
TTACGCCGACTCCTATCATCATACCAATACCACATCCATGGAGTCTCCATCTTTCACATCCTTACTCCAAACATACCCAA
ATTCTATTGTTAATACCCACCTTAATACTACTGGAGCATTGGAGGATGGTTCAATATCTAACATGCCTACCATGCATGTC
TCCGAGGTAAACTCGCTAACATATGGATTTCTTTACTCTCCTAAAAATATTTACCCATTTACACCGAATAATATATTGCA
ACAACAGAATATACAAAATGGAAGGCTACTATATGACGCTTCTTATGGTGTACCTACCCCTATTTCTCCATCCATGACAA
CCTCCTATGTACCAAGAGAAGATAACACCCCTCTAGTTGGTCCAAATGGCATTTTTGGTGGTGCTATTTTGCATGATTCT
ACATCCTTGGGTAATTACACATGCAAGATTTGTGGTCGCAAATTCGTCACATCTCAAGCCTACGGTGGTCACATGAGTTC
CCATGCCAAAGAAAGGAAGAAACACCTACAAATTTGA-------------------------------------------
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----------------------------------------------------
>chr2B_1_TraesCS2B01G337600
TATGTGTTAGTATTTGAATTTAAATTCACGCAAGTTGTATGGATCTCCCTTCAAAAGGAAATCTACCACACTTGAGTATG
CATTGAAACAAGTGTGCACAGTCTGTAGGGTGTGCCCTTTGT------------GAGAGAGAAGATTACACATGTTTTAA
TAGAATTTCACATTAATGGACTCATCTAATATTAAATTATGACATTATCAGGAAGACCTGGAATTTATTCATTGATATTC
ATACAATATCTATGAGATATGAGATACAAATTTGTCTCATAATTAAAGAGATCTTCTAGGATCTTTATATCTAAATTTGT
TCTTGCCATTAGTTTTCATATAACTTTCCAACGCAGTTTCTTTTGTTGAACGCAAAAAATCATCATTTATGATGATACAA
GAGAGCACACGTCTTCCTAAACAA-------------------------GAGATCATAAACTAACATCACTTGTTTAGGA
ACATGTGTGCTCTCTTGTATCATCATAAATGATGATTTTTTGTGTTCAACAAAACAAACTACGTTGGAAAGTTATATGAA
AACTAATGGCAAGATCAAATTTAGATATAAATATCCTAGAAGATCTCTTTAATTATGAGACAAATTGGTATCTAATATCT
CATAGATATTGTATGAATATCAATCAATAAATTCCAGGTCTTCCTGATAATGTCATAATTTAATATTAGATGAGTCTATT
AATGTGAAATTCTGTTAAAACATGTGTAAAGATCGAATTTCTCATTGAGAGATCCTAGAATATCTCGTTAATTATTATAC
AAATTTATATCGGATATCTCCTACACATTGTATAAATAACAATGATTAATATCTAGATATTCTAGATTATGTAATCATTC
AATATTACATGGGGCCATGCATGGATCTACTTATGTAAGATCACTATAAATATATTG--ACCTATGCAATAATCCTCATA
AGCTTCAAGCACTATCATAGCATAAGCATCTCTCTTCTCCATAGCTTCTTCTACAAAAAATTCGATCTTGCTAGTAGTTA
TGGATCCTAATGGCTCCTACCCTAACAAAGTTAGATCTAGCAAAAGTGATGCCTACATTTCTCCCTTGCATGAAGCATTG
AGAGGAACAAGAGCCATGCCAGTGTTAAATGATATTTTGGCCCTTGAGTCACTACCATCAGATTCACCTTCCATGGCAAA
CTCCTCACTTGCATCCGATGCACCACCTGAACCTACCATGATGCCATTCAATGCTAGTTACATGATGCCACACCAAGAGA
ATGTAGGCCTAGCACCACTACCACCACAATTGTCTAATACAATTATTAATCCTTTATCCATGGTTAATACAATAGTGTCC
CAGCCCAACAATGAGGAAATCCATCAAGATGAACATGAAATGTTCAGGTATGAAGACTTCCTTTCAAACCCTTTGTGGAA
TTACGCCGACTCCTATCATCATACCAATACCACATCCATGGAGTCTCCATCTTTCACATCCTTACTCCAAACATACCCAA
ATTCTATTGTTAATACCCACCTTAATACTACTGGAGCATTGGAGGATGGTTCAATATCTAACATGCCTACCATGCATGTC
TCCGAGGTAAACTCGCTAACATATGGATTTCTTTACTCTCCTAAAAATATTTACCCATTTACACCGAATAATATATTGCA
ACAACAGAATATACAAAATGGAAGGCTACTATATGACGCTTCTTATGGTGTACCTACCCCTATTTCTCCATCCATGACAA
CCTCCTATGTACCAAGAGAAGATAACACCCCTCTAGTTGGTCCAAATGGCATTTTTGGTGGTGCTATTTTGCATGATTCT
ACATCCTTGGGTAATTACACATGCAAGATTTGTGGTCGCAAATTCGTCACATCTCAAGCCTACGGTGGTCACATGAGTTC
CCATGCCAAAGAAAGGAAGAAACACCTACAAATTTGATCT-CCCAT--GTACTTGGACATCCCATGGTTACCATTCTCGG
GACAAATAATTCTACTAGCGCCAAAGTGGTTGAAGACCGAGAGTTTCTAGCTCAAGTGTAGAAATTTTAATAGATTTAC-
TTGTTTTTGTATACAAAAATATCAATGGAG-----------------TATGTTGTGAGGGTGTGAAACAAT----AGAAC
CGTCTTTGTTTGAGTGGTATGTGTTGTTGTTTCCATGTTTAACTAATAGAGTCATATTTAATGGTTGTGTACCATGTTAT
TATCTTCCATATTAATATATGAAGGATCAAAGATTTTTAATGAAGATTTTCTAGAGCTAGTTAAGATGTTTG-TTTCTAC
CATTTTTCATAAATTTCTTCGAAGTACAATAACATTTTCCAAATAATGTGCCATATAAAGTGCAAAACCATCTAAACCAT
TTTATTTAACGAGTAGTATCATCATTGG----------------------------------------------------
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--------------------------------------------------CAAAAGTCTTGCTATGACATGGATGCTGAA
TTGTGATTACCACCTAGCAAATTAAATACTCTAAACAATTTTTTCTTTGAACTAGCACATAAATTGCACATTGCTAGACA
TAAAAAATATGAAAGAACAATAATAAAAGTAATACATGCTTCTTCTATATACCTTGTTCATTGATTAAAAAAAGGAACAT
TATGCTTAACCAAAAAAATTATCATCCAAATCCCTAAGGAGCCTATGTAGACAAATACGTACCCGATTACTTATTGTGAA
ACCATAGGAGAAACAAACTATGAGTAAGAATTATTTTATGTTGGCAAGGTGGTTTATAGGTCATTGGCTATGTGAACAAT
CACCACACTATTGATTCTTCAAGAAAATGTTAGCAATGC-TTTTCTTTTATGTTGCT------CTATATATGTACTAAGA
GAAAACATCTCACCTTAGGTTGCTTGTGTTCACTTTTTCGTATAAGAAATAGAAAATTTCTCAAGCTCGTGTTCTCAATC
CAAACGCAAAGGATCCTTGAAATTTCCATTTCTATGATATTTCATGATAACC
>chr2D_9
--------AGTATTTGAATTTGAATTCACACAAGTTGTATGGCTTCCCCTTCAAAAGGAAATCTACCACACTTGAGTATG
CATTGAAACAAGTGTGCACAGTCTACAGGGCGTGCAATTTGTTCAAAGAGGAGAGAGAGAGAAGATTTGACACAATAATG
TAATGGAAAAGTGGCT----------------------------------------------------------------
----------------------------------TGTAATTATTGCACAGATCACGAAGCAGAAATAGACGACATAGATA
GCCTCTCTGAGGGTAC--------------------------TTCTTGATGGCATAAATATTTCATTAACAATAGTAGTT
TGGAGCCATGGTGCACCATAAGGAAGTTAATATACTAACTTTCAAAGTTGAGATCATAAACTAG--TCACTTGTTTAGGA
AGACGCGTGCTATCTTGTATCACCATAAACGATGATTTTTTGT--CCAACAAAAGAAAGTGTGTTGGAAAGTTATATTGA
AACTGAT-GCAAGATCAAATTTAGAAATAAAGATCCTAGAAGATCTCTTTAATTATTAGACAAATTGTTATCTCATATCT
CATAGATATTGTATGTATATCAGTGAATAAATTCCAGATCTTCCTGATAATGTCATAATTTAATATTAGATGAGGCCATT
AATGTGAAGTTCTATTAAAACATGTGGCAAGATTGAATTCCTCATTCAGAGATCCTAGAATATCTCGTTAATTATTAGAC
AAATTTATATCTGATATCTCCTAGACGTTGTATAAATAACAATGATTAAAATCCAGATATTCTAGATTATGTAATCATTC
AATATTACATGATGCCATGCATGGCCATAGTTTTGTAAGAACCTTATATATAC--ATCTACCTATGCAATAATCCTCATA
AGCTTCAAGCACTATCATAGCATAAGCGTCTCTCTTCTCCATAGCTTCTTCTG-AAAATTGTTGATCTTGCCAGTAGTCA
TGGATCCTAATGGCTCCTACCCTAACAAAGTTAGATCTAGTGAAAGTGATGCCTACATTTCTCCCTTGCATGAAGTATTG
AGAGGCACGACAGCCATGCCAGTGTTAAATGATATTTTGGCCTTTGAGTCACTACCATCAGATTCACCTTCCATGGTGAA
CTCCTCACTTGCACCCAATGCACCACTTGAACCTACCATGATGTTAGTCAATGATAGTTCCATGATGCCACACCAAGAGA
ATGTAGGCCTAGCACCACTACCACCACAATTGTCTGATACAATTATTAATCCTCTATCCATGGTTAATACCATAGTGCCC
CAGCCCAACAATGAGGAAATCCATCAAGATGAACATGAAATGTTCAAGCATGAAGATTTCCTTTCAAACCCTTTGTGGAA
TTATGCAGACTCCTATCATCATACCTATACCTCGCCCATGGAGTCTCCATCATTCACATCCTTACTCCAAACAGATCCAA
ATTCTATTGTTCATACCCACCTTAACACTAATGGAGCAATGGAGGATGGTTCAATCTCCGATATGCCCACCATGCATGTC
TCTGAGGTAAACTCACTACCATATGGATTTTGTTGTTCTCCTGAAAATATTGACCCATTTACACCTAATACTATATTGCA
ACAACAGAACATACAAAATGGAAGGCTACTATATGACTCTTCTTATGGTGTACCTGCCCCTATTTCTCCATTCATGACAA
CCTCGCATGTACCAAGAGAAGATAAGACCCCTCTAGTTGGTCCAAATGGCATTTTTGGTAGTGGTATTTTGCATGGTTCT
ACATCCTTGGGTAATTACACATGCAAGATTTGCGGTCGCAAATTCATCACATCTCAAGCCTACGGTGGTCACATGAGTTC
CCATGCCAAAGAAAGGAAGAAACAACTACAAAGTTGATCTTCCCAT--GGACTTGGACATCCCATGATTACCATTCTCGG
GACAAATATTTCTACTAGCGCCAAAATGGTTGAAGACCGAGAGGTTCTGGCTCAAGTGTAGAAATTTTAATAGATTTTAT
---TTTTTGGAAACAAAAGTATCAATGGAGTAACATAAGAGTGAGAATATGTTGTGAGGGTGTGAAACAAT----AGAAC
CATATTTGTTTAAATGGTATGTGTTGTTGTTTCCATGTTTAACTAATAGATTCATCTTTAATGGTTGTGGACCTTGTTAT
TCTCTTCCATATTAATATATGAAGGAACCGAGATTTTTCATGAAGATTTTCTAGAGCTAGGCAAGATGT-----------
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----------------------------------------------------
>chr2B_134
--------------------------------------------------------------------------------
-----------------------------------------------------------------TTACACATGTTTTAA
CAGAATTTCACATTAATAGACTCATCTAATATTAAATTATGACATTATCAGGAAGACCTGGAATTTATTGATTGATATTC
ATACAATATCTATGAGATATTAGATACCAATTTGTCTCATAATTAAAGAGATCTTCTAGGATATTTATATCTAAATTTGA
TCTTGCCATTAGTTTTCATATAACTTTCCAACGTAGTTTGTTTTGTTGAACACAAAAAATCATCATTTATGATGATACAA
GAGAGCACACATGTTCCTAAACAAGTGATGTTAGTTTATGA-------------------------TCTCTTGTTTAGGA
AGACGTGTGCTCTCTTGTATCATCATAAATGATGATTTTTTGCGTTCAACAAAAGAAACTGCGTTGGAAAGTTATATGAA
AACTAATGGCAAGAACAAATTTAGATATAAAGATCCTAGAAGATCTCTTTAATTATGAGACAAATTTGTATCTCATATCT
CATAGATATTGTATGAATATCAATGAATAAATTCCAGGTCTTCCTGATAATGTCATAATTTAATATTAGATGAGTCCATT
AATGTGAAATTCTATTAAAACATGTGTAA---------------------------------------------------
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----------------------------------------------------
>chr2A_413
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-------------------------------------------------GAGATCATAAACTAACATTACTTGTTTAGGA
AGACGTGTGCTATCTTGTATCATCATAGATGATGCTTTTTTGTGTCCAACAAAAGAAGGTGTGTTGGAAAATTATATTAA
AACTGATGCAAAAT-CAAATATAGAAATAAAGATCCTAGAAGATCTCTTTAATTATTAGACACATGTTTATCTCATATCT
CATAGATATTGTATGAATATCAGTGAATAAATTCCAGATCTTCTTGATAATGTCATAATT-AATATTAGATGACGCCATT
AACGCGAAATTGTATTAACACATAGGGCAAGATCAAATTCCACATTGAGAGATCCTAGAATATCTCGTTAATTATTAGAC
AAATTTATATCTGATATCTCTTAGACGTTCCATAAAT-ACAATTATTAAAATCTAGATATTCTAGATTTTGTAATCATTC
AATATTACATGAGGCCATGCATGGCTATAGTTCTGTAAGAACCTTATATATAGATATCTACCTATGCAATAATCCTCATA
AGCTTCAAGCACTATCATAGCATAAGCGTCTCTCTTCTCCATAGCTTC-------AAATTGTCGATCTTGCTAGTAGTCA
TGGATCCTAATGGCTCCTACCCCAACAAAGTTACATCTGGTGAGAATGATGCCTACATTTCCCCCTTGCATGAAGCATTG
AGAGGCACGAGAGCCATGCCAGTGTTAAATGATATTTTGGCCTTTGAGTCACTACCATCAGATTCACCTTCCATGGCGAA
CTCCTCATCTGCACCCGATGCACCACCTGAACCTACCATGATGCTAGTCAATGATAGTTCCATGATGCCACACCATGAGA
ATGTAGGTCTAGCACCACTCCCACCACAATTGTCTGATACAATTATTAATCCTTTATCCATGGTTAATACCATAGTGTCC
CAACCCAACAATGAGGAAATCCATCAAGATGAACATGAAATGTTCAGGCATGAAGACTTCCTTTCAAACCCTTTGTGGAA
TTACGCTGACTCCTATCATCATACACATACCTCGTCCATGGAGTCTCCATCATTCACATCCTTACTCCAAACAGATCCAA
ATTCTATTGTTCATACCCACCTTAACACTAATGGAGCAATGGAGGATGGTTCAATCTATGACATGCCCGCCATACATGTC
TCTGAGGTAAACTCACTACCATATGGATTTCATTGTTCTCCTGAAAATATTGACCCATTTACACCGAATACTATATTGCA
ACAACAGAACATACAAGATGGAAGGCTACTATATGATGCTTCTTATGGTGTACCTGCCCCTATTTCTCCATTCATGGCAA
CCTCACATGTACCAAGAGAATATAACACCCCTCTAGTTGGTCCAAATGGCATTTCTGATAGTGCTATTTTGCATGATTCT
ACATCCTTGGGTAATTACACATGCAAGATTTGCGGTCGCAAATTCAACACATCTCAAGCCTACGGTGGTCACATGAGTTC
CCATGCCAAAGAAAGGAAGAAACACCTACAAAGTTGATCTTCCCATATGTACTTGGACATCCCATGATTACCATTCTCGG
GACAAATATTTCTACTAGCACCAAAATGGTTGAAGACCGAGAGCTTCTAGCTCAAGTGGAGAAATTTTAATAGATTTTAT
TTGTTTTTGGAAACAAAAATATCAATGGAGTAACATAAGAGTGAGAATATGTTGTGAGGGTGTGAAACAATTAATAGAAC
TATCTTTGTTTGAATGGTATGTGTTGTTGTTTCCATGTTTAACTAATAGATTCATCTTTAATGGTCGTGTACCATGTTAT
TCTCTTCCATATTAATATATGAAGGAACCAAGATTTTTAATGAAGATTTTCTAGAGCTAGGTAAGATGTATGTTTCCTAA
CATTTTTCATAAACTTCTTCAAAGTAGAATAATATTTTCCAAATAATGTGCCATATAAAATGCTAAACCATCTAAACCAT
TTTGCTTAACGAGTAGTATCATCTAGGGGTGGGCATAAAAACCGACGAACTGAAAACCGAACAAACTAAATTTTCGGTTT
TTTTACTGTTACAGAAAAATTAGTTTTCCTGTCCACTAACCGAACAAAATTCGGTAGGTTCGGTTTGCATCTCGGTTAAC
CAAACAAAAACAAAACGAACGTGACTGATTGTACTGTACAGCACAAAAGCAGGCGTAGGCGTGCAACGTTGTCTCCCAGG
AGTCACACGCCCAACCGCCCACAATCGCCCATGAATGCATCATGCACGCATCTCACATAATGTGGGCCTGCCTGACCATT
CAAGTGCCTACAAGGATAAGGCCTACCTGACGTGGGCTTTTTGTGAACGGTGTGCCCGCACATGCGAATAGCTGACCACA
CCATTTCGCTGCTCTAGTCCCACCTCGCCCGACTGAGGAGATTAGCCAGATTTTTTGCCTATATAAGATGGTGCAGCTAG
TGCAATCGGAGCATAGATACTTGAAGCGTGGTCATTCCGTATAAAACCAAAAACCGAACCGAATATACGGTTAACCAAAT
TTTCGGTTAACTAATCTCAACTACCATTTTTGGTTTTTAGTTTGTCTAACCGAATTTTCAAAAAAAAAACGAATGGTAGA
AACTGATTTTTCGGTTTATACAGAACACCCAGCCCTACTATCATCATTGCCAAAAGTCTAGCTATGACATGGGTGCTCAA
TTGTGATTACCACCCAGGGATTAAAATACTCTAAACAATTTTTTCTTTGAACTAGCACATAAATTTCACATCGCTACACA
TAGACAATAT------------------------------------------CTTGTTCATTGATG-AAAAAAGGAACAT
TATGCTTAACAACATTTTTTATCATTCAAATCCCTAAGGAGCCTACGTAAACAAATACGTACCCGATTACTTATTGTGAA
ACCATAGGAGAAACAAGCTATGAGTAAGTGTTATTTTATGTTGGCAGGGTGGTTTGTAGGTCATTGGTTATGTGAACAAT
CACCACACTATTCATTCTTCCAGAAAATGTTAGCAATGATTTTTCTTTTATGTTGCTTCTTTTCTATATATGTACTAAGA
AAAAACATCTCACCTTAGGTTGCTTGTGTTTAATTTTTTGTATAAGAAATAGAAAAATTCTAAGGTGAGTGTTCTCAATC
CAAACGCAAAGGA---------------------------------------
>SNPs
SSSSSSSS-------------S-------S------------S-SS----------------------------------
------------------------SS----S----SS-------------------------------------------
-----------------S---------------------------------------------------S----------
--------------------S------S----------------------------------S----------------S
---------------------------------S-----S----------------------------------------
------------S-------------------------------------------------------------------
-S-S--------------------------------------------------S-----S-------------------
-------------------------------S-----------------------------------------S------
------------------------S---------------------------------------------------S---
-------------S-------------------------S-------------------------------------S--
-----------S-----------S--S----------------------S------------------------------
-----------S------------S-S--S--S-------S-SS----S---S--SS-----------------------
---------------------------S------------------------SS----SSS-----------------S-
----------------------------------------SS--------------------------------------
-----S--S---------------------------------S----------------------------------S--
-------------S------------------------------S-S------S-----S--------------------
-----------------------------------S----------------------------------S---------
------------------------------------------------S-------------------------------
------S------------------S-----S-S-----------------S---------------------S-S----
-----------S-------------S----S-------S----------------S---S-------S------------
--S-----------S---S------------S--SS------S--------S------------------S---------
---------S---------------------------------------------S---------------S--------
----SS-----------------------------------------------------S--------------------
--------------------------------S------------S----------------------------------
--------------------------------S---------------------------------S-------------
--------S----------------S-----------------S---------------------------------SS-
---------S-S--------------------------------------------------------------------
-S-----------S------------------------------------S----S------------------------
-S------------------------S-S-------------------------------S--------S-----S---S
-------------S------S-----S-----S--------------------------S---S----------------
---SS------------------SSS------------------------------------------------------
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-----------------------------------------------------------S------------S----S--
--------------S--SS-S-S------------------------------------------S-----S----S---
--S-S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------SS-------------
----------S-S-SSSS-------S-------------------S---S------------------------------
----------------S-----------SS----------------S--------S-----------S------------
------------S-------S-----------------S-----------------------------------------
S-----------------------------S-S-----S-----------------S----S-S-SSS------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_116
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----------------CACAGTCTGTAGGGTGTGCC--------------------------------------------
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>reverse_1126
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-----AACAAGAGCCATGCCAGTGT-------------------------------------------------------
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----------------------------------------------------
>forward_413
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------------------------------------------------------------------------TGATACAA
GAGAGCACACGTC-------------------------------------------------------------------
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>reverse_1551
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------------------------------CTGGAGCATTGGAGGATGGT------------------------------
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----------------------------------------------------
>forward_1245
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------------------------ACCTGAACCTACCATGATGCC-----------------------------------
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----------------------------------------------------
>reverse_3588
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-------------------------------------------------------------------CGTGTTCTCAATC
CAAACGCA--------------------------------------------
