Multiple sequence alignment - TraesCS2B01G332700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G332700 chr2B 100.000 3144 0 0 1 3144 476042471 476045614 0.000000e+00 5806.0
1 TraesCS2B01G332700 chr2A 89.978 2295 144 24 1 2252 539653222 539650971 0.000000e+00 2885.0
2 TraesCS2B01G332700 chr2A 91.946 745 48 8 2407 3144 539650725 539649986 0.000000e+00 1033.0
3 TraesCS2B01G332700 chr2A 92.029 138 7 2 2272 2406 539650908 539650772 1.150000e-44 191.0
4 TraesCS2B01G332700 chr2D 93.641 1950 67 23 489 2406 402552751 402550827 0.000000e+00 2861.0
5 TraesCS2B01G332700 chr2D 91.453 702 41 17 2407 3094 402550780 402550084 0.000000e+00 946.0
6 TraesCS2B01G332700 chr2D 91.892 296 23 1 1 296 402554442 402554148 2.260000e-111 412.0
7 TraesCS2B01G332700 chr2D 87.356 174 17 4 325 495 402554150 402553979 8.900000e-46 195.0
8 TraesCS2B01G332700 chr7B 72.358 246 53 15 181 417 611647318 611647557 2.620000e-06 63.9
9 TraesCS2B01G332700 chr7B 91.111 45 4 0 181 225 611659001 611659045 9.420000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G332700 chr2B 476042471 476045614 3143 False 5806.000000 5806 100.000000 1 3144 1 chr2B.!!$F1 3143
1 TraesCS2B01G332700 chr2A 539649986 539653222 3236 True 1369.666667 2885 91.317667 1 3144 3 chr2A.!!$R1 3143
2 TraesCS2B01G332700 chr2D 402550084 402554442 4358 True 1103.500000 2861 91.085500 1 3094 4 chr2D.!!$R1 3093

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
691 1931 0.178068 ACGTGCAGTGTTCAACTCCT 59.822 50.0 0.0 0.0 36.83 3.69 F
745 1986 0.952010 TAGCAAAACCGAACGAGGCC 60.952 55.0 0.0 0.0 33.69 5.19 F
1182 2439 1.021390 AGATTTGTTGCCTCGCCTCG 61.021 55.0 0.0 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1686 2961 0.245539 TCCTTCCTTTACAGCGACGG 59.754 55.000 0.00 0.0 0.00 4.79 R
2098 3385 0.811219 TCGCTGGCTCAATCATTCCG 60.811 55.000 0.00 0.0 0.00 4.30 R
3057 4452 1.007271 CTAGGCCTGGTGCGTATCG 60.007 63.158 17.99 0.0 42.61 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.150783 GCAGAGATCATACCAAAACTTTTCT 57.849 36.000 0.00 0.00 0.00 2.52
124 125 5.934781 ACCCTTGGAGATGATCTTTATGTC 58.065 41.667 0.00 0.00 0.00 3.06
146 147 2.601481 GTGGATTCACGTTGCTTCAG 57.399 50.000 0.00 0.00 33.87 3.02
176 177 7.065085 GCATGATGGTGGTATATAAGATGTCAC 59.935 40.741 0.00 0.00 0.00 3.67
177 178 7.855784 TGATGGTGGTATATAAGATGTCACT 57.144 36.000 0.00 0.00 0.00 3.41
231 232 0.179056 ATGAAACCATAGACGGGGCG 60.179 55.000 0.00 0.00 0.00 6.13
232 233 1.523032 GAAACCATAGACGGGGCGG 60.523 63.158 0.00 0.00 0.00 6.13
233 234 3.692370 AAACCATAGACGGGGCGGC 62.692 63.158 0.00 0.00 33.59 6.53
280 281 3.198068 TGTGAATTAGGAGCTCGAATGC 58.802 45.455 7.83 9.12 0.00 3.56
281 282 8.760541 AATTTGTGAATTAGGAGCTCGAATGCT 61.761 37.037 15.51 0.00 38.62 3.79
299 300 4.000331 TGCTGAAGCTCATAATCTAGCC 58.000 45.455 3.61 0.00 42.66 3.93
306 307 4.577875 AGCTCATAATCTAGCCAAGCATC 58.422 43.478 0.00 0.00 39.64 3.91
311 312 5.766670 TCATAATCTAGCCAAGCATCCTTTG 59.233 40.000 0.00 0.00 0.00 2.77
313 314 4.778213 ATCTAGCCAAGCATCCTTTGTA 57.222 40.909 0.00 0.00 0.00 2.41
321 322 5.380043 CCAAGCATCCTTTGTATCTATGGT 58.620 41.667 0.00 0.00 0.00 3.55
328 330 3.316308 CCTTTGTATCTATGGTTGCCTGC 59.684 47.826 0.00 0.00 0.00 4.85
332 334 3.650461 TGTATCTATGGTTGCCTGCCATA 59.350 43.478 9.62 9.62 44.23 2.74
367 370 6.073222 GCCAACCGATGATCTTATTTTCGTAT 60.073 38.462 0.00 0.00 0.00 3.06
495 500 1.036707 GCTCAACGCCTCTCCTCTAT 58.963 55.000 0.00 0.00 0.00 1.98
514 1754 0.250234 TGCAGATTACTCTTGCCGCT 59.750 50.000 0.00 0.00 0.00 5.52
532 1772 2.805295 CGCTACAACACTCCACAAGGAA 60.805 50.000 0.00 0.00 45.19 3.36
543 1783 1.133792 CCACAAGGAACCTGACTTGGT 60.134 52.381 8.97 0.00 46.29 3.67
570 1810 1.001974 AGCACCGTCTTTGTCATGCTA 59.998 47.619 0.00 0.00 41.45 3.49
577 1817 2.675348 GTCTTTGTCATGCTAGTCTGGC 59.325 50.000 0.32 0.32 0.00 4.85
588 1828 1.654954 TAGTCTGGCTCTTCGCGACC 61.655 60.000 9.15 7.56 40.44 4.79
646 1886 5.277828 GCAAGAACAAAATAGACCGTGACTT 60.278 40.000 0.00 0.00 0.00 3.01
647 1887 6.725246 CAAGAACAAAATAGACCGTGACTTT 58.275 36.000 0.00 0.00 0.00 2.66
683 1923 3.692998 CACAACAACGTGCAGTGTT 57.307 47.368 4.85 4.85 0.00 3.32
690 1930 1.014352 AACGTGCAGTGTTCAACTCC 58.986 50.000 0.00 0.00 36.83 3.85
691 1931 0.178068 ACGTGCAGTGTTCAACTCCT 59.822 50.000 0.00 0.00 36.83 3.69
693 1933 1.003545 CGTGCAGTGTTCAACTCCTTG 60.004 52.381 0.00 0.00 36.83 3.61
743 1984 2.482721 ACATTAGCAAAACCGAACGAGG 59.517 45.455 0.00 0.00 37.30 4.63
745 1986 0.952010 TAGCAAAACCGAACGAGGCC 60.952 55.000 0.00 0.00 33.69 5.19
1076 2327 4.729918 CCAGCTTCCGCCAGCCTT 62.730 66.667 0.70 0.00 41.12 4.35
1177 2434 1.135315 CGCCAGATTTGTTGCCTCG 59.865 57.895 0.00 0.00 0.00 4.63
1182 2439 1.021390 AGATTTGTTGCCTCGCCTCG 61.021 55.000 0.00 0.00 0.00 4.63
1183 2440 2.583685 GATTTGTTGCCTCGCCTCGC 62.584 60.000 0.00 0.00 0.00 5.03
1292 2555 1.617839 CCTGCCCTTCCTCCTCCTT 60.618 63.158 0.00 0.00 0.00 3.36
1322 2585 4.761058 TCCCTCTCCTTCGCCGCT 62.761 66.667 0.00 0.00 0.00 5.52
1323 2586 3.775654 CCCTCTCCTTCGCCGCTT 61.776 66.667 0.00 0.00 0.00 4.68
1324 2587 2.202810 CCTCTCCTTCGCCGCTTC 60.203 66.667 0.00 0.00 0.00 3.86
1613 2888 2.960688 GCCCCTCACCTGACCTGAC 61.961 68.421 0.00 0.00 0.00 3.51
1614 2889 2.294078 CCCCTCACCTGACCTGACC 61.294 68.421 0.00 0.00 0.00 4.02
1615 2890 2.650116 CCCTCACCTGACCTGACCG 61.650 68.421 0.00 0.00 0.00 4.79
1616 2891 2.262915 CTCACCTGACCTGACCGC 59.737 66.667 0.00 0.00 0.00 5.68
1617 2892 3.302347 CTCACCTGACCTGACCGCC 62.302 68.421 0.00 0.00 0.00 6.13
1618 2893 3.314331 CACCTGACCTGACCGCCT 61.314 66.667 0.00 0.00 0.00 5.52
1619 2894 3.314331 ACCTGACCTGACCGCCTG 61.314 66.667 0.00 0.00 0.00 4.85
1620 2895 4.087892 CCTGACCTGACCGCCTGG 62.088 72.222 0.00 0.00 42.84 4.45
1686 2961 5.119588 TCGTTAATTGTCCGTGATCTGAAAC 59.880 40.000 0.00 0.00 0.00 2.78
1706 2981 1.630148 CGTCGCTGTAAAGGAAGGAG 58.370 55.000 0.00 0.00 0.00 3.69
1730 3005 3.675225 CCATGAACGTATGCCTATTCTCG 59.325 47.826 0.00 0.00 0.00 4.04
1807 3082 3.670625 TGCTGTAGGGTGTGTACAATTC 58.329 45.455 0.00 0.00 30.04 2.17
1865 3140 5.459536 TGTGATATACTGATGTGAGAGCC 57.540 43.478 0.00 0.00 0.00 4.70
1947 3222 7.321984 CGAAATGGTGATATGTTGATTGATTCG 59.678 37.037 0.00 0.00 0.00 3.34
2007 3290 4.699735 TGGGCATCAATGTACAAACTACAG 59.300 41.667 0.00 0.00 0.00 2.74
2068 3351 4.820897 TCTTAAGTATGTCACCTGTGCTG 58.179 43.478 1.63 0.00 0.00 4.41
2098 3385 5.472478 TCAGAGAATCAATATTGCTCCATGC 59.528 40.000 10.76 0.00 37.82 4.06
2253 3574 6.183360 ACCTGTACTTTGTTTTCTTGTACTGC 60.183 38.462 0.00 0.00 35.76 4.40
2309 3639 4.687948 GTGCAATCACGCTATCATGATAGT 59.312 41.667 33.06 19.26 37.31 2.12
2316 3646 7.796958 TCACGCTATCATGATAGTAAATTCG 57.203 36.000 33.06 28.37 42.07 3.34
2362 3692 4.589216 TGGAAAATCAGCAAACTCAAGG 57.411 40.909 0.00 0.00 0.00 3.61
2418 3797 4.275689 CACAAGTTGTCTGCATAAACAGGA 59.724 41.667 5.27 0.00 38.26 3.86
2430 3809 5.769662 TGCATAAACAGGAAGTCAGTTGAAT 59.230 36.000 0.00 0.00 0.00 2.57
2439 3818 2.165167 AGTCAGTTGAATGGGCATGTG 58.835 47.619 0.00 0.00 0.00 3.21
2688 4072 2.159352 ACTGTAAAAACGTGTGCCAACC 60.159 45.455 0.00 0.00 0.00 3.77
2706 4090 1.088340 CCTGAATGAGCAGCTGTCCG 61.088 60.000 16.64 0.63 34.56 4.79
2802 4186 2.172851 TTGTAGACGCGGGTTTGATT 57.827 45.000 12.47 0.00 0.00 2.57
2882 4266 0.326238 TACTCCCTCCCGCTCCAAAT 60.326 55.000 0.00 0.00 0.00 2.32
2925 4310 2.963101 AGGCAACCCTTAGTTCAAAACC 59.037 45.455 0.00 0.00 38.74 3.27
2936 4321 6.037391 CCTTAGTTCAAAACCGTGACACTTAA 59.963 38.462 3.68 0.00 0.00 1.85
2945 4330 4.906618 ACCGTGACACTTAATTTGGATCT 58.093 39.130 3.68 0.00 0.00 2.75
2962 4347 5.141182 TGGATCTGAGGGAGTACTTGATAC 58.859 45.833 0.00 0.00 0.00 2.24
2968 4353 6.096987 TCTGAGGGAGTACTTGATACATCAAC 59.903 42.308 0.00 0.00 41.51 3.18
2970 4355 6.384015 TGAGGGAGTACTTGATACATCAACAT 59.616 38.462 0.00 0.00 41.51 2.71
2977 4371 9.453572 AGTACTTGATACATCAACATCAACAAT 57.546 29.630 0.45 0.00 41.51 2.71
2978 4372 9.708222 GTACTTGATACATCAACATCAACAATC 57.292 33.333 0.45 0.00 41.51 2.67
2979 4373 7.765307 ACTTGATACATCAACATCAACAATCC 58.235 34.615 0.45 0.00 41.51 3.01
2982 4376 4.051661 ACATCAACATCAACAATCCCCT 57.948 40.909 0.00 0.00 0.00 4.79
2984 4378 3.805066 TCAACATCAACAATCCCCTCA 57.195 42.857 0.00 0.00 0.00 3.86
2985 4379 3.689347 TCAACATCAACAATCCCCTCAG 58.311 45.455 0.00 0.00 0.00 3.35
2994 4389 3.118531 ACAATCCCCTCAGTGAATAGCT 58.881 45.455 0.00 0.00 0.00 3.32
3010 4405 2.725221 AGCTGGATCTTCATCAACCC 57.275 50.000 0.00 0.00 0.00 4.11
3037 4432 2.955660 CCCGCCCAATTGTACAATGTAT 59.044 45.455 21.46 3.62 0.00 2.29
3056 4451 4.591498 TGTATACATGATCTTTAGGGCCGT 59.409 41.667 2.24 2.24 0.00 5.68
3057 4452 2.622064 ACATGATCTTTAGGGCCGTC 57.378 50.000 0.00 0.00 0.00 4.79
3090 4485 1.446099 CTAGAAGCTCACGCGCCAA 60.446 57.895 5.73 0.00 42.32 4.52
3108 4503 0.834687 AAGCCCAACCGGACTCTACA 60.835 55.000 9.46 0.00 0.00 2.74
3127 4522 1.912043 CAGAGTTCCTGGATTGGTCCT 59.088 52.381 0.00 0.00 45.32 3.85
3130 4525 2.838202 GAGTTCCTGGATTGGTCCTACA 59.162 50.000 0.00 0.00 45.32 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 2.912956 AGGGTCATGGCTTCTCTAACAA 59.087 45.455 0.00 0.00 0.00 2.83
124 125 1.197721 GAAGCAACGTGAATCCACTGG 59.802 52.381 0.00 0.00 41.06 4.00
146 147 8.618677 CATCTTATATACCACCATCATGCAATC 58.381 37.037 0.00 0.00 0.00 2.67
176 177 3.971245 AGCTAGTTGAACTCCCTTGAG 57.029 47.619 0.00 0.00 44.62 3.02
177 178 4.162320 CCATAGCTAGTTGAACTCCCTTGA 59.838 45.833 0.00 0.00 0.00 3.02
191 192 4.011966 TGGATGATTGCACCATAGCTAG 57.988 45.455 0.00 0.00 34.99 3.42
231 232 5.251601 TGTTACCAGTTGTAAAAACTGCC 57.748 39.130 11.80 2.07 44.62 4.85
232 233 9.471084 AATTATGTTACCAGTTGTAAAAACTGC 57.529 29.630 11.80 0.94 44.62 4.40
256 257 5.220931 GCATTCGAGCTCCTAATTCACAAAT 60.221 40.000 8.47 0.00 0.00 2.32
259 260 3.118629 AGCATTCGAGCTCCTAATTCACA 60.119 43.478 8.47 0.00 42.18 3.58
260 261 3.247173 CAGCATTCGAGCTCCTAATTCAC 59.753 47.826 8.47 1.33 44.54 3.18
280 281 4.451774 GCTTGGCTAGATTATGAGCTTCAG 59.548 45.833 0.00 0.00 38.79 3.02
281 282 4.141642 TGCTTGGCTAGATTATGAGCTTCA 60.142 41.667 0.00 0.00 38.79 3.02
299 300 6.732154 CAACCATAGATACAAAGGATGCTTG 58.268 40.000 0.00 0.00 0.00 4.01
306 307 3.316308 GCAGGCAACCATAGATACAAAGG 59.684 47.826 0.00 0.00 37.17 3.11
311 312 2.638480 TGGCAGGCAACCATAGATAC 57.362 50.000 0.00 0.00 30.29 2.24
495 500 0.250234 AGCGGCAAGAGTAATCTGCA 59.750 50.000 1.45 0.00 33.50 4.41
514 1754 2.775384 AGGTTCCTTGTGGAGTGTTGTA 59.225 45.455 0.00 0.00 44.24 2.41
532 1772 2.371841 TGCTGTATGAACCAAGTCAGGT 59.628 45.455 0.00 0.00 45.91 4.00
543 1783 3.064207 GACAAAGACGGTGCTGTATGAA 58.936 45.455 0.00 0.00 0.00 2.57
570 1810 2.569134 GTCGCGAAGAGCCAGACT 59.431 61.111 12.06 0.00 44.76 3.24
577 1817 0.784778 GAAAGTGTGGTCGCGAAGAG 59.215 55.000 12.06 0.00 0.00 2.85
588 1828 4.381079 GCAGAGTAGGACTAGGAAAGTGTG 60.381 50.000 0.00 0.00 39.07 3.82
634 1874 3.489355 TGGTGTCTAAAGTCACGGTCTA 58.511 45.455 2.12 0.00 35.45 2.59
683 1923 1.376466 GGCTGGCTCAAGGAGTTGA 59.624 57.895 0.00 0.00 40.55 3.18
690 1930 0.038166 TAGGGTTTGGCTGGCTCAAG 59.962 55.000 2.00 0.00 0.00 3.02
691 1931 0.038166 CTAGGGTTTGGCTGGCTCAA 59.962 55.000 2.00 0.00 0.00 3.02
693 1933 1.750780 GCTAGGGTTTGGCTGGCTC 60.751 63.158 2.00 0.00 0.00 4.70
743 1984 1.144969 TTGTCGATTCAAGTCACGGC 58.855 50.000 0.00 0.00 0.00 5.68
863 2114 0.108963 CGGGGCGTAATAATTGGGGA 59.891 55.000 0.00 0.00 0.00 4.81
864 2115 1.520600 GCGGGGCGTAATAATTGGGG 61.521 60.000 0.00 0.00 0.00 4.96
1187 2444 2.435693 ATACAGGTGGAGGCGAGGC 61.436 63.158 0.00 0.00 0.00 4.70
1192 2449 2.203070 CGGCATACAGGTGGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
1292 2555 3.281787 AGGGACGGGGAGGAGGAA 61.282 66.667 0.00 0.00 0.00 3.36
1463 2738 1.807886 GAGCCTCTCGCCGAAGTTA 59.192 57.895 0.00 0.00 38.78 2.24
1686 2961 0.245539 TCCTTCCTTTACAGCGACGG 59.754 55.000 0.00 0.00 0.00 4.79
1730 3005 6.031471 ACGGCGTGTAAAAATGGAATTAATC 58.969 36.000 13.76 0.00 33.67 1.75
1783 3058 3.562343 TGTACACACCCTACAGCAAAA 57.438 42.857 0.00 0.00 0.00 2.44
1865 3140 5.163302 TCACAAATAAAACAGACACCACG 57.837 39.130 0.00 0.00 0.00 4.94
1947 3222 2.142292 AATCAGTCCCAGCCCCACAC 62.142 60.000 0.00 0.00 0.00 3.82
2007 3290 7.274250 GCACCACAGAAATAATTTGAATCACTC 59.726 37.037 0.00 0.00 0.00 3.51
2068 3351 5.298777 AGCAATATTGATTCTCTGAAGTGCC 59.701 40.000 19.73 0.00 0.00 5.01
2098 3385 0.811219 TCGCTGGCTCAATCATTCCG 60.811 55.000 0.00 0.00 0.00 4.30
2213 3500 3.059352 ACAGGTACATCCAGCTTGTTC 57.941 47.619 0.00 0.00 39.02 3.18
2224 3511 7.875327 ACAAGAAAACAAAGTACAGGTACAT 57.125 32.000 11.78 0.00 38.48 2.29
2253 3574 4.460382 ACCAGGTGCAGATACAAAGAAATG 59.540 41.667 0.00 0.00 0.00 2.32
2316 3646 9.429359 CATGATCACTAAATAGTTGATACCTCC 57.571 37.037 0.00 0.00 33.46 4.30
2362 3692 4.755123 ACAGCTAACAGTTAACCATGACAC 59.245 41.667 0.88 0.00 0.00 3.67
2418 3797 2.559668 CACATGCCCATTCAACTGACTT 59.440 45.455 0.00 0.00 0.00 3.01
2430 3809 2.163592 TTACCCCACCACATGCCCA 61.164 57.895 0.00 0.00 0.00 5.36
2552 3933 1.874231 CATCTGGCTCTCACATGCATC 59.126 52.381 0.00 0.00 0.00 3.91
2688 4072 1.703438 GCGGACAGCTGCTCATTCAG 61.703 60.000 15.27 5.31 43.23 3.02
2773 4157 2.286772 CCGCGTCTACAAACAAAAGCTT 60.287 45.455 4.92 0.00 0.00 3.74
2802 4186 7.172532 ACGCACAAACTTATTTAGACTGAATGA 59.827 33.333 2.82 0.00 0.00 2.57
2823 4207 2.484889 AGAAGAGGACTTTCAACGCAC 58.515 47.619 0.00 0.00 36.39 5.34
2882 4266 6.421801 GCCTAGTTCAAAACTACGACACTTAA 59.578 38.462 0.00 0.00 42.81 1.85
2925 4310 5.063944 CCTCAGATCCAAATTAAGTGTCACG 59.936 44.000 0.00 0.00 0.00 4.35
2936 4321 5.032846 TCAAGTACTCCCTCAGATCCAAAT 58.967 41.667 0.00 0.00 0.00 2.32
2945 4330 5.719563 TGTTGATGTATCAAGTACTCCCTCA 59.280 40.000 7.51 0.00 46.44 3.86
2962 4347 4.018490 TGAGGGGATTGTTGATGTTGATG 58.982 43.478 0.00 0.00 0.00 3.07
2968 4353 3.354948 TCACTGAGGGGATTGTTGATG 57.645 47.619 0.00 0.00 0.00 3.07
2970 4355 4.626287 GCTATTCACTGAGGGGATTGTTGA 60.626 45.833 0.00 0.00 0.00 3.18
2977 4371 1.008327 TCCAGCTATTCACTGAGGGGA 59.992 52.381 0.00 0.00 37.32 4.81
2978 4372 1.500474 TCCAGCTATTCACTGAGGGG 58.500 55.000 0.00 0.00 37.32 4.79
2979 4373 2.971330 AGATCCAGCTATTCACTGAGGG 59.029 50.000 0.00 0.00 37.32 4.30
2982 4376 5.364735 TGATGAAGATCCAGCTATTCACTGA 59.635 40.000 0.00 0.00 37.32 3.41
2984 4378 5.883685 TGATGAAGATCCAGCTATTCACT 57.116 39.130 0.00 0.00 34.71 3.41
2985 4379 5.238214 GGTTGATGAAGATCCAGCTATTCAC 59.762 44.000 0.00 0.00 34.71 3.18
2994 4389 1.991813 TGGTGGGTTGATGAAGATCCA 59.008 47.619 0.00 0.00 0.00 3.41
3010 4405 3.762247 CAATTGGGCGGGCTGGTG 61.762 66.667 0.26 0.00 0.00 4.17
3037 4432 2.035449 CGACGGCCCTAAAGATCATGTA 59.965 50.000 0.00 0.00 0.00 2.29
3056 4451 1.452953 CTAGGCCTGGTGCGTATCGA 61.453 60.000 17.99 0.00 42.61 3.59
3057 4452 1.007271 CTAGGCCTGGTGCGTATCG 60.007 63.158 17.99 0.00 42.61 2.92
3063 4458 1.153269 GAGCTTCTAGGCCTGGTGC 60.153 63.158 17.99 20.52 40.16 5.01
3065 4460 1.608717 CGTGAGCTTCTAGGCCTGGT 61.609 60.000 17.99 3.26 0.00 4.00
3066 4461 1.142748 CGTGAGCTTCTAGGCCTGG 59.857 63.158 17.99 14.14 0.00 4.45
3102 4497 7.135369 GGACCAATCCAGGAACTCTGTAGAG 62.135 52.000 7.34 7.34 45.47 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.