Multiple sequence alignment - TraesCS2B01G329000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G329000 chr2B 100.000 2465 0 0 1 2465 472252195 472249731 0.000000e+00 4553.0
1 TraesCS2B01G329000 chr2B 90.000 100 7 3 1701 1797 493852640 493852739 2.570000e-25 126.0
2 TraesCS2B01G329000 chr2B 89.286 84 8 1 151 233 489944364 489944281 1.210000e-18 104.0
3 TraesCS2B01G329000 chr2B 86.747 83 10 1 152 233 172156380 172156298 9.390000e-15 91.6
4 TraesCS2B01G329000 chr2B 97.561 41 0 1 114 154 90749330 90749291 4.400000e-08 69.4
5 TraesCS2B01G329000 chr2A 95.876 1455 32 10 282 1715 536314126 536312679 0.000000e+00 2329.0
6 TraesCS2B01G329000 chr2A 92.202 218 16 1 1814 2030 536312669 536312452 8.560000e-80 307.0
7 TraesCS2B01G329000 chr2A 91.398 93 6 2 1706 1797 639990057 639990148 2.570000e-25 126.0
8 TraesCS2B01G329000 chr2A 91.139 79 7 0 155 233 3718569 3718491 9.320000e-20 108.0
9 TraesCS2B01G329000 chr2A 87.879 66 1 4 91 154 10005267 10005327 1.220000e-08 71.3
10 TraesCS2B01G329000 chr2D 93.622 925 35 5 791 1715 398693027 398692127 0.000000e+00 1360.0
11 TraesCS2B01G329000 chr2D 95.985 523 13 1 282 796 398695361 398694839 0.000000e+00 843.0
12 TraesCS2B01G329000 chr2D 93.056 216 14 1 1814 2028 398692117 398691902 5.120000e-82 315.0
13 TraesCS2B01G329000 chr2D 89.524 210 18 4 2241 2449 398691761 398691555 1.880000e-66 263.0
14 TraesCS2B01G329000 chr2D 89.080 174 13 3 2049 2219 398691915 398691745 6.910000e-51 211.0
15 TraesCS2B01G329000 chr4B 81.868 182 26 5 1051 1232 638307904 638307730 1.980000e-31 147.0
16 TraesCS2B01G329000 chr4B 91.398 93 6 2 1714 1806 644289474 644289384 2.570000e-25 126.0
17 TraesCS2B01G329000 chr4B 87.209 86 9 2 148 233 28156947 28156864 2.020000e-16 97.1
18 TraesCS2B01G329000 chr4A 93.478 92 4 2 1714 1804 632341713 632341803 4.280000e-28 135.0
19 TraesCS2B01G329000 chr7B 91.398 93 7 1 1707 1798 64043280 64043372 2.570000e-25 126.0
20 TraesCS2B01G329000 chr6A 92.135 89 6 1 1710 1797 1841127 1841215 9.260000e-25 124.0
21 TraesCS2B01G329000 chr3B 90.526 95 8 1 1708 1801 738120240 738120334 9.260000e-25 124.0
22 TraesCS2B01G329000 chr3B 90.909 77 7 0 157 233 727327375 727327451 1.210000e-18 104.0
23 TraesCS2B01G329000 chr4D 87.736 106 11 2 1699 1803 446912523 446912627 3.330000e-24 122.0
24 TraesCS2B01G329000 chr4D 100.000 28 0 0 55 82 374623191 374623218 4.000000e-03 52.8
25 TraesCS2B01G329000 chr3A 87.619 105 8 5 1695 1797 631821280 631821381 1.550000e-22 117.0
26 TraesCS2B01G329000 chr5D 85.849 106 15 0 1133 1238 445062753 445062648 2.000000e-21 113.0
27 TraesCS2B01G329000 chr5D 82.883 111 19 0 1133 1243 445072769 445072659 1.560000e-17 100.0
28 TraesCS2B01G329000 chr5D 88.608 79 7 2 155 233 481737341 481737265 7.260000e-16 95.3
29 TraesCS2B01G329000 chr5D 100.000 39 0 0 117 155 100072562 100072600 3.400000e-09 73.1
30 TraesCS2B01G329000 chr5B 85.849 106 15 0 1133 1238 542295573 542295468 2.000000e-21 113.0
31 TraesCS2B01G329000 chr5B 84.906 106 16 0 1133 1238 542320023 542319918 9.320000e-20 108.0
32 TraesCS2B01G329000 chr5B 84.259 108 17 0 1133 1240 542694761 542694654 3.350000e-19 106.0
33 TraesCS2B01G329000 chr5B 90.196 51 2 3 104 154 541942142 541942189 2.050000e-06 63.9
34 TraesCS2B01G329000 chr5A 84.906 106 16 0 1133 1238 562108418 562108313 9.320000e-20 108.0
35 TraesCS2B01G329000 chr1D 88.095 84 9 1 151 233 59818866 59818949 5.610000e-17 99.0
36 TraesCS2B01G329000 chr1D 84.270 89 13 1 146 233 113830246 113830334 4.370000e-13 86.1
37 TraesCS2B01G329000 chr7D 85.714 84 11 1 151 233 485220762 485220679 1.210000e-13 87.9
38 TraesCS2B01G329000 chr7D 97.619 42 0 1 113 154 561630991 561631031 1.220000e-08 71.3
39 TraesCS2B01G329000 chr7D 95.455 44 0 2 111 154 21827653 21827612 4.400000e-08 69.4
40 TraesCS2B01G329000 chr7D 93.617 47 1 2 108 154 574117549 574117593 4.400000e-08 69.4
41 TraesCS2B01G329000 chr3D 85.714 84 10 2 148 231 186942601 186942682 1.210000e-13 87.9
42 TraesCS2B01G329000 chr1B 100.000 38 0 0 117 154 42277727 42277690 1.220000e-08 71.3
43 TraesCS2B01G329000 chr6D 97.561 41 0 1 114 154 116858274 116858313 4.400000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G329000 chr2B 472249731 472252195 2464 True 4553.0 4553 100.0000 1 2465 1 chr2B.!!$R3 2464
1 TraesCS2B01G329000 chr2A 536312452 536314126 1674 True 1318.0 2329 94.0390 282 2030 2 chr2A.!!$R2 1748
2 TraesCS2B01G329000 chr2D 398691555 398695361 3806 True 598.4 1360 92.2534 282 2449 5 chr2D.!!$R1 2167

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 298 0.027716 CGTACATGTCCGAGGAGACG 59.972 60.0 4.61 1.82 39.77 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1998 3838 0.252103 AGTTCCCTAGGACAAGGCGA 60.252 55.0 11.48 0.0 35.09 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.930693 GAGATGATCTCGTAATTAATAGGGTTT 57.069 33.333 6.70 0.00 33.35 3.27
45 46 9.992910 CTCGTAATTAATAGGGTTTACAAAACC 57.007 33.333 12.21 12.21 46.34 3.27
58 59 9.772973 GGGTTTACAAAACCAAAATCTCTTAAT 57.227 29.630 20.08 0.00 45.28 1.40
82 83 9.890629 AATTAAGAGAAGGCAAAACTTTTCTTT 57.109 25.926 14.27 0.00 44.63 2.52
83 84 9.890629 ATTAAGAGAAGGCAAAACTTTTCTTTT 57.109 25.926 14.27 3.94 44.63 2.27
84 85 7.834068 AAGAGAAGGCAAAACTTTTCTTTTC 57.166 32.000 6.07 0.00 44.63 2.29
85 86 7.175347 AGAGAAGGCAAAACTTTTCTTTTCT 57.825 32.000 0.00 4.25 38.37 2.52
86 87 8.293699 AGAGAAGGCAAAACTTTTCTTTTCTA 57.706 30.769 6.83 0.00 38.37 2.10
87 88 8.409371 AGAGAAGGCAAAACTTTTCTTTTCTAG 58.591 33.333 6.83 0.00 38.37 2.43
88 89 8.067751 AGAAGGCAAAACTTTTCTTTTCTAGT 57.932 30.769 0.00 0.00 0.00 2.57
89 90 8.531982 AGAAGGCAAAACTTTTCTTTTCTAGTT 58.468 29.630 0.00 0.00 32.52 2.24
90 91 9.151471 GAAGGCAAAACTTTTCTTTTCTAGTTT 57.849 29.630 0.00 0.00 41.25 2.66
91 92 8.703604 AGGCAAAACTTTTCTTTTCTAGTTTC 57.296 30.769 0.00 0.00 39.25 2.78
92 93 8.531982 AGGCAAAACTTTTCTTTTCTAGTTTCT 58.468 29.630 0.00 0.00 39.25 2.52
93 94 8.808529 GGCAAAACTTTTCTTTTCTAGTTTCTC 58.191 33.333 0.00 0.00 39.25 2.87
94 95 9.574458 GCAAAACTTTTCTTTTCTAGTTTCTCT 57.426 29.630 0.00 0.00 39.25 3.10
104 105 8.778358 TCTTTTCTAGTTTCTCTTCATTTCAGC 58.222 33.333 0.00 0.00 0.00 4.26
105 106 8.450578 TTTTCTAGTTTCTCTTCATTTCAGCA 57.549 30.769 0.00 0.00 0.00 4.41
106 107 8.627208 TTTCTAGTTTCTCTTCATTTCAGCAT 57.373 30.769 0.00 0.00 0.00 3.79
107 108 8.627208 TTCTAGTTTCTCTTCATTTCAGCATT 57.373 30.769 0.00 0.00 0.00 3.56
108 109 8.627208 TCTAGTTTCTCTTCATTTCAGCATTT 57.373 30.769 0.00 0.00 0.00 2.32
109 110 9.725019 TCTAGTTTCTCTTCATTTCAGCATTTA 57.275 29.630 0.00 0.00 0.00 1.40
112 113 8.465201 AGTTTCTCTTCATTTCAGCATTTATCC 58.535 33.333 0.00 0.00 0.00 2.59
113 114 8.465201 GTTTCTCTTCATTTCAGCATTTATCCT 58.535 33.333 0.00 0.00 0.00 3.24
114 115 9.685276 TTTCTCTTCATTTCAGCATTTATCCTA 57.315 29.630 0.00 0.00 0.00 2.94
115 116 9.857656 TTCTCTTCATTTCAGCATTTATCCTAT 57.142 29.630 0.00 0.00 0.00 2.57
116 117 9.281371 TCTCTTCATTTCAGCATTTATCCTATG 57.719 33.333 0.00 0.00 0.00 2.23
117 118 8.985315 TCTTCATTTCAGCATTTATCCTATGT 57.015 30.769 0.00 0.00 0.00 2.29
118 119 9.412460 TCTTCATTTCAGCATTTATCCTATGTT 57.588 29.630 0.00 0.00 0.00 2.71
144 145 5.446260 TTTAGAAAAGGAGGATGTACCCC 57.554 43.478 0.00 0.00 40.05 4.95
145 146 2.206223 AGAAAAGGAGGATGTACCCCC 58.794 52.381 0.00 0.00 40.05 5.40
146 147 0.916809 AAAAGGAGGATGTACCCCCG 59.083 55.000 0.00 0.00 40.05 5.73
147 148 0.986550 AAAGGAGGATGTACCCCCGG 60.987 60.000 0.00 0.00 40.05 5.73
148 149 3.557290 GGAGGATGTACCCCCGGC 61.557 72.222 0.00 0.00 40.05 6.13
149 150 3.557290 GAGGATGTACCCCCGGCC 61.557 72.222 0.00 0.00 40.05 6.13
150 151 4.103928 AGGATGTACCCCCGGCCT 62.104 66.667 0.00 0.00 40.05 5.19
151 152 3.557290 GGATGTACCCCCGGCCTC 61.557 72.222 0.00 0.00 0.00 4.70
152 153 2.446036 GATGTACCCCCGGCCTCT 60.446 66.667 0.00 0.00 0.00 3.69
153 154 2.768344 ATGTACCCCCGGCCTCTG 60.768 66.667 0.00 0.00 0.00 3.35
154 155 3.635869 ATGTACCCCCGGCCTCTGT 62.636 63.158 0.00 0.00 0.00 3.41
155 156 3.782443 GTACCCCCGGCCTCTGTG 61.782 72.222 0.00 0.00 0.00 3.66
159 160 4.162690 CCCCGGCCTCTGTGCTAC 62.163 72.222 0.00 0.00 0.00 3.58
160 161 3.077556 CCCGGCCTCTGTGCTACT 61.078 66.667 0.00 0.00 0.00 2.57
161 162 2.496817 CCGGCCTCTGTGCTACTC 59.503 66.667 0.00 0.00 0.00 2.59
162 163 2.496817 CGGCCTCTGTGCTACTCC 59.503 66.667 0.00 0.00 0.00 3.85
163 164 2.351244 CGGCCTCTGTGCTACTCCA 61.351 63.158 0.00 0.00 0.00 3.86
164 165 1.888436 CGGCCTCTGTGCTACTCCAA 61.888 60.000 0.00 0.00 0.00 3.53
165 166 0.543749 GGCCTCTGTGCTACTCCAAT 59.456 55.000 0.00 0.00 0.00 3.16
166 167 1.474143 GGCCTCTGTGCTACTCCAATC 60.474 57.143 0.00 0.00 0.00 2.67
167 168 1.474143 GCCTCTGTGCTACTCCAATCC 60.474 57.143 0.00 0.00 0.00 3.01
168 169 1.139853 CCTCTGTGCTACTCCAATCCC 59.860 57.143 0.00 0.00 0.00 3.85
169 170 1.139853 CTCTGTGCTACTCCAATCCCC 59.860 57.143 0.00 0.00 0.00 4.81
170 171 1.207791 CTGTGCTACTCCAATCCCCT 58.792 55.000 0.00 0.00 0.00 4.79
171 172 1.561542 CTGTGCTACTCCAATCCCCTT 59.438 52.381 0.00 0.00 0.00 3.95
172 173 1.281867 TGTGCTACTCCAATCCCCTTG 59.718 52.381 0.00 0.00 34.42 3.61
173 174 1.559682 GTGCTACTCCAATCCCCTTGA 59.440 52.381 0.00 0.00 36.97 3.02
174 175 1.559682 TGCTACTCCAATCCCCTTGAC 59.440 52.381 0.00 0.00 36.97 3.18
175 176 1.473434 GCTACTCCAATCCCCTTGACG 60.473 57.143 0.00 0.00 36.97 4.35
176 177 2.108168 CTACTCCAATCCCCTTGACGA 58.892 52.381 0.00 0.00 36.97 4.20
177 178 1.358152 ACTCCAATCCCCTTGACGAA 58.642 50.000 0.00 0.00 36.97 3.85
178 179 1.702957 ACTCCAATCCCCTTGACGAAA 59.297 47.619 0.00 0.00 36.97 3.46
179 180 2.290323 ACTCCAATCCCCTTGACGAAAG 60.290 50.000 0.00 0.00 36.97 2.62
186 187 4.473643 CTTGACGAAAGGGTGCCA 57.526 55.556 0.00 0.00 31.68 4.92
187 188 2.714259 CTTGACGAAAGGGTGCCAA 58.286 52.632 0.00 0.00 31.68 4.52
188 189 1.028905 CTTGACGAAAGGGTGCCAAA 58.971 50.000 0.00 0.00 31.68 3.28
189 190 1.613437 CTTGACGAAAGGGTGCCAAAT 59.387 47.619 0.00 0.00 31.68 2.32
190 191 0.958091 TGACGAAAGGGTGCCAAATG 59.042 50.000 0.00 0.00 0.00 2.32
191 192 0.958822 GACGAAAGGGTGCCAAATGT 59.041 50.000 0.00 0.00 0.00 2.71
192 193 0.958822 ACGAAAGGGTGCCAAATGTC 59.041 50.000 0.00 0.00 0.00 3.06
193 194 1.247567 CGAAAGGGTGCCAAATGTCT 58.752 50.000 0.00 0.00 0.00 3.41
194 195 1.068333 CGAAAGGGTGCCAAATGTCTG 60.068 52.381 0.00 0.00 0.00 3.51
195 196 2.238521 GAAAGGGTGCCAAATGTCTGA 58.761 47.619 0.00 0.00 0.00 3.27
196 197 1.915141 AAGGGTGCCAAATGTCTGAG 58.085 50.000 0.00 0.00 0.00 3.35
197 198 0.610232 AGGGTGCCAAATGTCTGAGC 60.610 55.000 0.00 0.00 0.00 4.26
198 199 1.598701 GGGTGCCAAATGTCTGAGCC 61.599 60.000 0.00 0.00 0.00 4.70
199 200 0.610232 GGTGCCAAATGTCTGAGCCT 60.610 55.000 0.00 0.00 0.00 4.58
200 201 1.340017 GGTGCCAAATGTCTGAGCCTA 60.340 52.381 0.00 0.00 0.00 3.93
201 202 2.436417 GTGCCAAATGTCTGAGCCTAA 58.564 47.619 0.00 0.00 0.00 2.69
202 203 3.019564 GTGCCAAATGTCTGAGCCTAAT 58.980 45.455 0.00 0.00 0.00 1.73
203 204 4.199310 GTGCCAAATGTCTGAGCCTAATA 58.801 43.478 0.00 0.00 0.00 0.98
204 205 4.035675 GTGCCAAATGTCTGAGCCTAATAC 59.964 45.833 0.00 0.00 0.00 1.89
205 206 3.565902 GCCAAATGTCTGAGCCTAATACC 59.434 47.826 0.00 0.00 0.00 2.73
206 207 4.780815 CCAAATGTCTGAGCCTAATACCA 58.219 43.478 0.00 0.00 0.00 3.25
207 208 5.192927 CCAAATGTCTGAGCCTAATACCAA 58.807 41.667 0.00 0.00 0.00 3.67
208 209 5.652014 CCAAATGTCTGAGCCTAATACCAAA 59.348 40.000 0.00 0.00 0.00 3.28
209 210 6.404734 CCAAATGTCTGAGCCTAATACCAAAC 60.405 42.308 0.00 0.00 0.00 2.93
210 211 4.901197 TGTCTGAGCCTAATACCAAACA 57.099 40.909 0.00 0.00 0.00 2.83
211 212 4.832248 TGTCTGAGCCTAATACCAAACAG 58.168 43.478 0.00 0.00 0.00 3.16
212 213 4.530553 TGTCTGAGCCTAATACCAAACAGA 59.469 41.667 0.00 0.00 0.00 3.41
213 214 4.870991 GTCTGAGCCTAATACCAAACAGAC 59.129 45.833 0.00 0.00 43.32 3.51
214 215 4.530553 TCTGAGCCTAATACCAAACAGACA 59.469 41.667 0.00 0.00 0.00 3.41
215 216 5.189736 TCTGAGCCTAATACCAAACAGACAT 59.810 40.000 0.00 0.00 0.00 3.06
216 217 5.815581 TGAGCCTAATACCAAACAGACATT 58.184 37.500 0.00 0.00 0.00 2.71
217 218 5.647658 TGAGCCTAATACCAAACAGACATTG 59.352 40.000 0.00 0.00 0.00 2.82
218 219 4.399303 AGCCTAATACCAAACAGACATTGC 59.601 41.667 0.00 0.00 0.00 3.56
219 220 4.157656 GCCTAATACCAAACAGACATTGCA 59.842 41.667 0.00 0.00 0.00 4.08
220 221 5.163519 GCCTAATACCAAACAGACATTGCAT 60.164 40.000 0.00 0.00 0.00 3.96
221 222 6.267817 CCTAATACCAAACAGACATTGCATG 58.732 40.000 0.00 0.00 0.00 4.06
222 223 5.981088 AATACCAAACAGACATTGCATGA 57.019 34.783 0.00 0.00 0.00 3.07
223 224 5.981088 ATACCAAACAGACATTGCATGAA 57.019 34.783 0.00 0.00 0.00 2.57
224 225 4.669206 ACCAAACAGACATTGCATGAAA 57.331 36.364 0.00 0.00 0.00 2.69
225 226 4.624015 ACCAAACAGACATTGCATGAAAG 58.376 39.130 0.00 0.00 0.00 2.62
226 227 3.430895 CCAAACAGACATTGCATGAAAGC 59.569 43.478 0.00 0.00 0.00 3.51
227 228 3.308438 AACAGACATTGCATGAAAGCC 57.692 42.857 0.00 0.00 0.00 4.35
228 229 2.522185 ACAGACATTGCATGAAAGCCT 58.478 42.857 0.00 0.00 0.00 4.58
229 230 3.689347 ACAGACATTGCATGAAAGCCTA 58.311 40.909 0.00 0.00 0.00 3.93
230 231 4.081406 ACAGACATTGCATGAAAGCCTAA 58.919 39.130 0.00 0.00 0.00 2.69
231 232 4.082571 ACAGACATTGCATGAAAGCCTAAC 60.083 41.667 0.00 0.00 0.00 2.34
232 233 4.081406 AGACATTGCATGAAAGCCTAACA 58.919 39.130 0.00 0.00 0.00 2.41
233 234 4.523943 AGACATTGCATGAAAGCCTAACAA 59.476 37.500 0.00 0.00 0.00 2.83
234 235 4.559153 ACATTGCATGAAAGCCTAACAAC 58.441 39.130 0.00 0.00 0.00 3.32
235 236 4.039004 ACATTGCATGAAAGCCTAACAACA 59.961 37.500 0.00 0.00 0.00 3.33
236 237 4.870123 TTGCATGAAAGCCTAACAACAT 57.130 36.364 0.00 0.00 0.00 2.71
237 238 4.870123 TGCATGAAAGCCTAACAACATT 57.130 36.364 0.00 0.00 0.00 2.71
238 239 5.212532 TGCATGAAAGCCTAACAACATTT 57.787 34.783 0.00 0.00 0.00 2.32
239 240 6.338214 TGCATGAAAGCCTAACAACATTTA 57.662 33.333 0.00 0.00 0.00 1.40
240 241 6.934056 TGCATGAAAGCCTAACAACATTTAT 58.066 32.000 0.00 0.00 0.00 1.40
241 242 7.035004 TGCATGAAAGCCTAACAACATTTATC 58.965 34.615 0.00 0.00 0.00 1.75
242 243 6.476706 GCATGAAAGCCTAACAACATTTATCC 59.523 38.462 0.00 0.00 0.00 2.59
243 244 7.631377 GCATGAAAGCCTAACAACATTTATCCT 60.631 37.037 0.00 0.00 0.00 3.24
244 245 8.902806 CATGAAAGCCTAACAACATTTATCCTA 58.097 33.333 0.00 0.00 0.00 2.94
245 246 9.646522 ATGAAAGCCTAACAACATTTATCCTAT 57.353 29.630 0.00 0.00 0.00 2.57
246 247 8.902806 TGAAAGCCTAACAACATTTATCCTATG 58.097 33.333 0.00 0.00 0.00 2.23
247 248 8.823220 AAAGCCTAACAACATTTATCCTATGT 57.177 30.769 0.00 0.00 37.82 2.29
248 249 7.807977 AGCCTAACAACATTTATCCTATGTG 57.192 36.000 0.00 0.00 36.41 3.21
249 250 7.573710 AGCCTAACAACATTTATCCTATGTGA 58.426 34.615 0.00 0.00 36.41 3.58
250 251 7.499232 AGCCTAACAACATTTATCCTATGTGAC 59.501 37.037 0.00 0.00 36.41 3.67
251 252 7.282224 GCCTAACAACATTTATCCTATGTGACA 59.718 37.037 0.00 0.00 36.41 3.58
252 253 8.612619 CCTAACAACATTTATCCTATGTGACAC 58.387 37.037 0.00 0.00 36.41 3.67
253 254 7.994425 AACAACATTTATCCTATGTGACACA 57.006 32.000 11.41 11.41 36.41 3.72
254 255 7.377766 ACAACATTTATCCTATGTGACACAC 57.622 36.000 11.22 1.42 36.41 3.82
255 256 7.168219 ACAACATTTATCCTATGTGACACACT 58.832 34.615 11.22 3.23 36.41 3.55
256 257 8.318412 ACAACATTTATCCTATGTGACACACTA 58.682 33.333 11.22 4.24 36.41 2.74
257 258 9.330063 CAACATTTATCCTATGTGACACACTAT 57.670 33.333 11.22 4.90 36.41 2.12
258 259 9.905713 AACATTTATCCTATGTGACACACTATT 57.094 29.630 11.22 0.00 36.41 1.73
263 264 9.981114 TTATCCTATGTGACACACTATTACATG 57.019 33.333 11.22 0.00 35.11 3.21
264 265 7.418337 TCCTATGTGACACACTATTACATGT 57.582 36.000 11.22 2.69 35.11 3.21
265 266 7.489160 TCCTATGTGACACACTATTACATGTC 58.511 38.462 11.22 0.00 41.51 3.06
266 267 7.342026 TCCTATGTGACACACTATTACATGTCT 59.658 37.037 11.22 0.00 41.65 3.41
267 268 8.630037 CCTATGTGACACACTATTACATGTCTA 58.370 37.037 11.22 0.00 41.65 2.59
270 271 8.757164 TGTGACACACTATTACATGTCTAAAG 57.243 34.615 0.00 0.00 41.65 1.85
271 272 7.330946 TGTGACACACTATTACATGTCTAAAGC 59.669 37.037 0.00 0.00 41.65 3.51
272 273 7.545965 GTGACACACTATTACATGTCTAAAGCT 59.454 37.037 0.00 0.00 41.65 3.74
273 274 8.745590 TGACACACTATTACATGTCTAAAGCTA 58.254 33.333 0.00 0.00 41.65 3.32
274 275 9.582431 GACACACTATTACATGTCTAAAGCTAA 57.418 33.333 0.00 0.00 38.72 3.09
275 276 9.587772 ACACACTATTACATGTCTAAAGCTAAG 57.412 33.333 0.00 0.00 0.00 2.18
276 277 9.035607 CACACTATTACATGTCTAAAGCTAAGG 57.964 37.037 0.00 0.00 0.00 2.69
277 278 7.711339 ACACTATTACATGTCTAAAGCTAAGGC 59.289 37.037 0.00 0.00 39.06 4.35
278 279 7.171678 CACTATTACATGTCTAAAGCTAAGGCC 59.828 40.741 0.00 0.00 39.73 5.19
279 280 2.906354 ACATGTCTAAAGCTAAGGCCG 58.094 47.619 0.00 0.00 39.73 6.13
280 281 2.236395 ACATGTCTAAAGCTAAGGCCGT 59.764 45.455 0.00 0.00 39.73 5.68
297 298 0.027716 CGTACATGTCCGAGGAGACG 59.972 60.000 4.61 1.82 39.77 4.18
321 322 3.120199 GGACCATACATACGCATGCAATC 60.120 47.826 19.57 0.00 35.39 2.67
805 2631 3.695556 TGCAAATATGTGTCCATGGAGTG 59.304 43.478 16.81 4.66 32.29 3.51
807 2633 4.439153 GCAAATATGTGTCCATGGAGTGTG 60.439 45.833 16.81 6.24 32.29 3.82
973 2799 5.045066 TCTCTCTTGTACCTGAGGTAGCTAA 60.045 44.000 12.49 7.12 39.02 3.09
1040 2866 2.551413 GGATGGGGATGGGGATGGG 61.551 68.421 0.00 0.00 0.00 4.00
1041 2867 2.455122 ATGGGGATGGGGATGGGG 60.455 66.667 0.00 0.00 0.00 4.96
1042 2868 3.078909 ATGGGGATGGGGATGGGGA 62.079 63.158 0.00 0.00 0.00 4.81
1043 2869 2.120854 GGGGATGGGGATGGGGAT 60.121 66.667 0.00 0.00 0.00 3.85
1044 2870 2.551413 GGGGATGGGGATGGGGATG 61.551 68.421 0.00 0.00 0.00 3.51
1045 2871 2.551413 GGGATGGGGATGGGGATGG 61.551 68.421 0.00 0.00 0.00 3.51
1286 3112 0.831307 GGAGATCAAGGTAAGGCCGT 59.169 55.000 0.00 0.00 43.70 5.68
1429 3255 2.159226 GCTAGAGGCAACGAAGAGCTTA 60.159 50.000 0.00 0.00 46.39 3.09
1475 3307 2.554032 TGAAGCTATGATCGCTCGATGA 59.446 45.455 9.70 1.27 36.56 2.92
1563 3395 1.596954 GCGCGTCATTTCTTGTGTGTT 60.597 47.619 8.43 0.00 0.00 3.32
1591 3423 6.646653 TCTGCTATCGCTTATCAGGTTAATTG 59.353 38.462 0.00 0.00 36.97 2.32
1613 3445 0.746659 GTTGTTGGCTGGTTTCTGCT 59.253 50.000 0.00 0.00 37.86 4.24
1718 3557 5.093849 TGTTTGCAGTAATCTACTACCCC 57.906 43.478 0.00 0.00 37.23 4.95
1719 3558 4.080751 TGTTTGCAGTAATCTACTACCCCC 60.081 45.833 0.00 0.00 37.23 5.40
1720 3559 3.700863 TGCAGTAATCTACTACCCCCT 57.299 47.619 0.00 0.00 37.23 4.79
1721 3560 3.573695 TGCAGTAATCTACTACCCCCTC 58.426 50.000 0.00 0.00 37.23 4.30
1722 3561 3.206866 TGCAGTAATCTACTACCCCCTCT 59.793 47.826 0.00 0.00 37.23 3.69
1723 3562 3.574826 GCAGTAATCTACTACCCCCTCTG 59.425 52.174 0.00 0.00 37.23 3.35
1724 3563 4.805744 CAGTAATCTACTACCCCCTCTGT 58.194 47.826 0.00 0.00 37.23 3.41
1725 3564 5.692242 GCAGTAATCTACTACCCCCTCTGTA 60.692 48.000 0.00 0.00 37.23 2.74
1726 3565 6.371278 CAGTAATCTACTACCCCCTCTGTAA 58.629 44.000 0.00 0.00 37.23 2.41
1727 3566 6.837568 CAGTAATCTACTACCCCCTCTGTAAA 59.162 42.308 0.00 0.00 37.23 2.01
1728 3567 7.509659 CAGTAATCTACTACCCCCTCTGTAAAT 59.490 40.741 0.00 0.00 37.23 1.40
1729 3568 8.072480 AGTAATCTACTACCCCCTCTGTAAATT 58.928 37.037 0.00 0.00 37.23 1.82
1730 3569 7.766736 AATCTACTACCCCCTCTGTAAATTT 57.233 36.000 0.00 0.00 0.00 1.82
1731 3570 8.865244 AATCTACTACCCCCTCTGTAAATTTA 57.135 34.615 0.00 0.00 0.00 1.40
1732 3571 9.461734 AATCTACTACCCCCTCTGTAAATTTAT 57.538 33.333 0.31 0.00 0.00 1.40
1740 3579 8.383947 ACCCCCTCTGTAAATTTATATAAGAGC 58.616 37.037 16.77 0.40 0.00 4.09
1741 3580 8.383175 CCCCCTCTGTAAATTTATATAAGAGCA 58.617 37.037 16.77 3.92 0.00 4.26
1742 3581 9.965902 CCCCTCTGTAAATTTATATAAGAGCAT 57.034 33.333 16.77 0.00 0.00 3.79
1806 3645 2.896039 ACAGAGGAGTAGTTCTTGCCT 58.104 47.619 0.00 0.00 0.00 4.75
1807 3646 2.564947 ACAGAGGAGTAGTTCTTGCCTG 59.435 50.000 0.00 0.00 0.00 4.85
1808 3647 2.564947 CAGAGGAGTAGTTCTTGCCTGT 59.435 50.000 0.00 0.00 0.00 4.00
1809 3648 3.764434 CAGAGGAGTAGTTCTTGCCTGTA 59.236 47.826 0.00 0.00 0.00 2.74
1810 3649 4.220821 CAGAGGAGTAGTTCTTGCCTGTAA 59.779 45.833 0.00 0.00 0.00 2.41
1811 3650 4.838986 AGAGGAGTAGTTCTTGCCTGTAAA 59.161 41.667 0.00 0.00 0.00 2.01
1812 3651 5.046950 AGAGGAGTAGTTCTTGCCTGTAAAG 60.047 44.000 0.00 0.00 0.00 1.85
1846 3685 7.039882 ACTAAATGTGTGGTCCTAGAATAACG 58.960 38.462 0.00 0.00 0.00 3.18
1899 3739 6.823689 TGAACTCTTTATATTCCCAGTTCTGC 59.176 38.462 10.16 0.00 40.19 4.26
1963 3803 9.699410 TCAAGGGTTTATCATGATCAGTTTAAT 57.301 29.630 12.53 0.00 0.00 1.40
1991 3831 2.948979 GGATTTACATGACCAATCGCCA 59.051 45.455 0.00 0.00 0.00 5.69
2034 3874 7.741554 AGGGAACTCCTGATTACATATATCC 57.258 40.000 0.00 0.00 46.07 2.59
2035 3875 6.674419 AGGGAACTCCTGATTACATATATCCC 59.326 42.308 0.00 0.00 46.07 3.85
2036 3876 6.407074 GGGAACTCCTGATTACATATATCCCG 60.407 46.154 0.00 0.00 32.98 5.14
2037 3877 5.599999 ACTCCTGATTACATATATCCCGC 57.400 43.478 0.00 0.00 0.00 6.13
2038 3878 5.023452 ACTCCTGATTACATATATCCCGCA 58.977 41.667 0.00 0.00 0.00 5.69
2039 3879 5.483937 ACTCCTGATTACATATATCCCGCAA 59.516 40.000 0.00 0.00 0.00 4.85
2040 3880 6.013725 ACTCCTGATTACATATATCCCGCAAA 60.014 38.462 0.00 0.00 0.00 3.68
2041 3881 6.774673 TCCTGATTACATATATCCCGCAAAA 58.225 36.000 0.00 0.00 0.00 2.44
2042 3882 7.227873 TCCTGATTACATATATCCCGCAAAAA 58.772 34.615 0.00 0.00 0.00 1.94
2097 3937 6.773200 AGATTACTAGCACTGCACACTATCTA 59.227 38.462 3.30 0.00 0.00 1.98
2102 3942 5.193663 AGCACTGCACACTATCTAGTATG 57.806 43.478 3.30 0.00 33.99 2.39
2116 3956 4.007659 TCTAGTATGCTCACGACAGACAA 58.992 43.478 0.00 0.00 31.71 3.18
2117 3957 2.947852 AGTATGCTCACGACAGACAAC 58.052 47.619 0.00 0.00 31.71 3.32
2147 3987 4.458989 AGATGAGACGCCTTAATTTTTGCA 59.541 37.500 0.00 0.00 0.00 4.08
2162 4002 5.588568 TTTTTGCAATTTACATCCTTGCG 57.411 34.783 0.00 0.00 46.35 4.85
2205 4048 9.669353 CTTAATTATAAGAGAAACATGCGCATT 57.331 29.630 22.81 7.43 40.90 3.56
2206 4049 9.663904 TTAATTATAAGAGAAACATGCGCATTC 57.336 29.630 22.81 17.20 0.00 2.67
2207 4050 6.925610 TTATAAGAGAAACATGCGCATTCT 57.074 33.333 22.81 21.98 36.17 2.40
2208 4051 5.824904 ATAAGAGAAACATGCGCATTCTT 57.175 34.783 27.90 27.90 33.73 2.52
2209 4052 6.925610 ATAAGAGAAACATGCGCATTCTTA 57.074 33.333 29.57 29.57 33.73 2.10
2210 4053 5.824904 AAGAGAAACATGCGCATTCTTAT 57.175 34.783 25.32 17.18 33.73 1.73
2211 4054 5.165911 AGAGAAACATGCGCATTCTTATG 57.834 39.130 22.81 12.93 33.73 1.90
2212 4055 4.637534 AGAGAAACATGCGCATTCTTATGT 59.362 37.500 22.81 13.69 33.73 2.29
2213 4056 5.124457 AGAGAAACATGCGCATTCTTATGTT 59.876 36.000 22.81 19.22 43.40 2.71
2216 4059 6.783892 AAACATGCGCATTCTTATGTTTTT 57.216 29.167 24.38 10.14 46.00 1.94
2315 4158 3.485947 TTGATTTACATCCTTGCGTGC 57.514 42.857 0.00 0.00 0.00 5.34
2323 4166 7.652300 TTTACATCCTTGCGTGCTATAATAG 57.348 36.000 0.00 0.00 0.00 1.73
2356 4199 5.444122 CCTAATTTTAGCAGAAGCATACGC 58.556 41.667 0.00 0.00 45.49 4.42
2358 4201 3.740044 TTTTAGCAGAAGCATACGCAC 57.260 42.857 0.00 0.00 45.49 5.34
2367 4210 4.614284 CAGAAGCATACGCACTTTCTTTTG 59.386 41.667 0.00 0.00 42.27 2.44
2371 4214 5.348164 AGCATACGCACTTTCTTTTGTTTT 58.652 33.333 0.00 0.00 42.27 2.43
2372 4215 5.810074 AGCATACGCACTTTCTTTTGTTTTT 59.190 32.000 0.00 0.00 42.27 1.94
2373 4216 6.975772 AGCATACGCACTTTCTTTTGTTTTTA 59.024 30.769 0.00 0.00 42.27 1.52
2374 4217 7.489757 AGCATACGCACTTTCTTTTGTTTTTAA 59.510 29.630 0.00 0.00 42.27 1.52
2378 4221 8.873242 ACGCACTTTCTTTTGTTTTTAAATTG 57.127 26.923 0.00 0.00 0.00 2.32
2379 4222 8.713271 ACGCACTTTCTTTTGTTTTTAAATTGA 58.287 25.926 0.00 0.00 0.00 2.57
2380 4223 9.701355 CGCACTTTCTTTTGTTTTTAAATTGAT 57.299 25.926 0.00 0.00 0.00 2.57
2398 4241 3.827625 TGATTAACAATTCGTTTGGCCG 58.172 40.909 0.00 0.00 39.80 6.13
2401 4244 1.606903 AACAATTCGTTTGGCCGGTA 58.393 45.000 1.90 0.00 39.80 4.02
2404 4247 2.094957 ACAATTCGTTTGGCCGGTATTG 60.095 45.455 1.90 6.05 39.80 1.90
2405 4248 1.099689 ATTCGTTTGGCCGGTATTGG 58.900 50.000 1.90 0.00 0.00 3.16
2422 4265 7.594758 CCGGTATTGGCAGTATATTGATTTTTG 59.405 37.037 0.00 0.00 0.00 2.44
2450 4294 6.844254 GCTTAGATATAAGCTAGTACTGCGT 58.156 40.000 21.95 8.15 46.49 5.24
2451 4295 6.743627 GCTTAGATATAAGCTAGTACTGCGTG 59.256 42.308 21.95 0.00 46.49 5.34
2452 4296 5.630661 AGATATAAGCTAGTACTGCGTGG 57.369 43.478 5.39 0.00 35.28 4.94
2453 4297 4.459685 AGATATAAGCTAGTACTGCGTGGG 59.540 45.833 5.39 0.00 35.28 4.61
2454 4298 1.108776 TAAGCTAGTACTGCGTGGGG 58.891 55.000 5.39 0.00 35.28 4.96
2455 4299 0.903454 AAGCTAGTACTGCGTGGGGT 60.903 55.000 5.39 0.00 35.28 4.95
2456 4300 0.033796 AGCTAGTACTGCGTGGGGTA 60.034 55.000 5.39 0.00 35.28 3.69
2457 4301 1.038280 GCTAGTACTGCGTGGGGTAT 58.962 55.000 5.39 0.00 0.00 2.73
2458 4302 1.411612 GCTAGTACTGCGTGGGGTATT 59.588 52.381 5.39 0.00 0.00 1.89
2459 4303 2.802057 GCTAGTACTGCGTGGGGTATTG 60.802 54.545 5.39 0.00 0.00 1.90
2460 4304 0.539986 AGTACTGCGTGGGGTATTGG 59.460 55.000 0.00 0.00 0.00 3.16
2461 4305 1.093496 GTACTGCGTGGGGTATTGGC 61.093 60.000 0.00 0.00 0.00 4.52
2462 4306 1.268992 TACTGCGTGGGGTATTGGCT 61.269 55.000 0.00 0.00 0.00 4.75
2463 4307 2.045438 TGCGTGGGGTATTGGCTG 60.045 61.111 0.00 0.00 0.00 4.85
2464 4308 2.045340 GCGTGGGGTATTGGCTGT 60.045 61.111 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 8.962679 ACCCTATTAATTACGAGATCATCTCTC 58.037 37.037 12.98 1.28 45.98 3.20
10 11 8.887264 ACCCTATTAATTACGAGATCATCTCT 57.113 34.615 12.98 2.87 41.26 3.10
11 12 9.930693 AAACCCTATTAATTACGAGATCATCTC 57.069 33.333 4.35 4.35 40.06 2.75
19 20 9.992910 GGTTTTGTAAACCCTATTAATTACGAG 57.007 33.333 9.65 0.00 34.26 4.18
20 21 9.512588 TGGTTTTGTAAACCCTATTAATTACGA 57.487 29.630 16.40 0.00 39.54 3.43
28 29 9.154632 AGAGATTTTGGTTTTGTAAACCCTATT 57.845 29.630 16.40 2.40 39.54 1.73
29 30 8.721133 AGAGATTTTGGTTTTGTAAACCCTAT 57.279 30.769 16.40 8.55 39.54 2.57
30 31 8.541899 AAGAGATTTTGGTTTTGTAAACCCTA 57.458 30.769 16.40 4.54 39.54 3.53
31 32 7.432148 AAGAGATTTTGGTTTTGTAAACCCT 57.568 32.000 16.40 7.55 39.54 4.34
32 33 9.772973 ATTAAGAGATTTTGGTTTTGTAAACCC 57.227 29.630 16.40 0.71 39.54 4.11
56 57 9.890629 AAAGAAAAGTTTTGCCTTCTCTTAATT 57.109 25.926 5.36 0.00 32.04 1.40
57 58 9.890629 AAAAGAAAAGTTTTGCCTTCTCTTAAT 57.109 25.926 5.36 0.00 32.04 1.40
58 59 9.366216 GAAAAGAAAAGTTTTGCCTTCTCTTAA 57.634 29.630 5.36 0.00 32.04 1.85
59 60 8.749354 AGAAAAGAAAAGTTTTGCCTTCTCTTA 58.251 29.630 5.36 0.00 32.04 2.10
60 61 7.615403 AGAAAAGAAAAGTTTTGCCTTCTCTT 58.385 30.769 5.36 0.00 34.10 2.85
61 62 7.175347 AGAAAAGAAAAGTTTTGCCTTCTCT 57.825 32.000 5.36 3.03 29.58 3.10
62 63 8.191446 ACTAGAAAAGAAAAGTTTTGCCTTCTC 58.809 33.333 5.36 0.73 29.58 2.87
63 64 8.067751 ACTAGAAAAGAAAAGTTTTGCCTTCT 57.932 30.769 5.36 11.74 29.58 2.85
64 65 8.703604 AACTAGAAAAGAAAAGTTTTGCCTTC 57.296 30.769 5.36 5.38 29.58 3.46
65 66 9.151471 GAAACTAGAAAAGAAAAGTTTTGCCTT 57.849 29.630 5.36 1.07 41.08 4.35
66 67 8.531982 AGAAACTAGAAAAGAAAAGTTTTGCCT 58.468 29.630 5.36 0.00 41.08 4.75
67 68 8.703604 AGAAACTAGAAAAGAAAAGTTTTGCC 57.296 30.769 5.36 0.00 41.08 4.52
68 69 9.574458 AGAGAAACTAGAAAAGAAAAGTTTTGC 57.426 29.630 5.36 0.00 41.08 3.68
78 79 8.778358 GCTGAAATGAAGAGAAACTAGAAAAGA 58.222 33.333 0.00 0.00 0.00 2.52
79 80 8.562892 TGCTGAAATGAAGAGAAACTAGAAAAG 58.437 33.333 0.00 0.00 0.00 2.27
80 81 8.450578 TGCTGAAATGAAGAGAAACTAGAAAA 57.549 30.769 0.00 0.00 0.00 2.29
81 82 8.627208 ATGCTGAAATGAAGAGAAACTAGAAA 57.373 30.769 0.00 0.00 0.00 2.52
82 83 8.627208 AATGCTGAAATGAAGAGAAACTAGAA 57.373 30.769 0.00 0.00 0.00 2.10
83 84 8.627208 AAATGCTGAAATGAAGAGAAACTAGA 57.373 30.769 0.00 0.00 0.00 2.43
86 87 8.465201 GGATAAATGCTGAAATGAAGAGAAACT 58.535 33.333 0.00 0.00 0.00 2.66
87 88 8.465201 AGGATAAATGCTGAAATGAAGAGAAAC 58.535 33.333 0.00 0.00 0.00 2.78
88 89 8.585471 AGGATAAATGCTGAAATGAAGAGAAA 57.415 30.769 0.00 0.00 0.00 2.52
89 90 9.857656 ATAGGATAAATGCTGAAATGAAGAGAA 57.142 29.630 0.00 0.00 0.00 2.87
90 91 9.281371 CATAGGATAAATGCTGAAATGAAGAGA 57.719 33.333 0.00 0.00 0.00 3.10
91 92 9.064706 ACATAGGATAAATGCTGAAATGAAGAG 57.935 33.333 0.00 0.00 0.00 2.85
92 93 8.985315 ACATAGGATAAATGCTGAAATGAAGA 57.015 30.769 0.00 0.00 0.00 2.87
120 121 6.250711 GGGGTACATCCTCCTTTTCTAAAAA 58.749 40.000 0.00 0.00 36.25 1.94
121 122 5.823312 GGGGTACATCCTCCTTTTCTAAAA 58.177 41.667 0.00 0.00 36.25 1.52
122 123 5.446260 GGGGTACATCCTCCTTTTCTAAA 57.554 43.478 0.00 0.00 36.25 1.85
132 133 3.557290 GGCCGGGGGTACATCCTC 61.557 72.222 2.18 0.00 36.25 3.71
133 134 4.103928 AGGCCGGGGGTACATCCT 62.104 66.667 2.18 0.00 36.25 3.24
134 135 3.557290 GAGGCCGGGGGTACATCC 61.557 72.222 2.18 0.00 0.00 3.51
135 136 2.446036 AGAGGCCGGGGGTACATC 60.446 66.667 2.18 0.00 0.00 3.06
136 137 2.768344 CAGAGGCCGGGGGTACAT 60.768 66.667 2.18 0.00 0.00 2.29
137 138 4.326227 ACAGAGGCCGGGGGTACA 62.326 66.667 2.18 0.00 0.00 2.90
138 139 3.782443 CACAGAGGCCGGGGGTAC 61.782 72.222 2.18 0.00 0.00 3.34
142 143 4.162690 GTAGCACAGAGGCCGGGG 62.163 72.222 2.18 0.00 0.00 5.73
143 144 3.077556 AGTAGCACAGAGGCCGGG 61.078 66.667 2.18 0.00 0.00 5.73
144 145 2.496817 GAGTAGCACAGAGGCCGG 59.503 66.667 0.00 0.00 0.00 6.13
145 146 1.888436 TTGGAGTAGCACAGAGGCCG 61.888 60.000 0.00 0.00 0.00 6.13
146 147 0.543749 ATTGGAGTAGCACAGAGGCC 59.456 55.000 0.00 0.00 0.00 5.19
147 148 1.474143 GGATTGGAGTAGCACAGAGGC 60.474 57.143 0.00 0.00 0.00 4.70
148 149 1.139853 GGGATTGGAGTAGCACAGAGG 59.860 57.143 0.00 0.00 0.00 3.69
149 150 1.139853 GGGGATTGGAGTAGCACAGAG 59.860 57.143 0.00 0.00 0.00 3.35
150 151 1.204146 GGGGATTGGAGTAGCACAGA 58.796 55.000 0.00 0.00 0.00 3.41
151 152 1.207791 AGGGGATTGGAGTAGCACAG 58.792 55.000 0.00 0.00 0.00 3.66
152 153 1.281867 CAAGGGGATTGGAGTAGCACA 59.718 52.381 0.00 0.00 35.08 4.57
153 154 1.559682 TCAAGGGGATTGGAGTAGCAC 59.440 52.381 0.00 0.00 39.54 4.40
154 155 1.559682 GTCAAGGGGATTGGAGTAGCA 59.440 52.381 0.00 0.00 39.54 3.49
155 156 1.473434 CGTCAAGGGGATTGGAGTAGC 60.473 57.143 0.00 0.00 39.54 3.58
156 157 2.108168 TCGTCAAGGGGATTGGAGTAG 58.892 52.381 0.00 0.00 39.54 2.57
157 158 2.241281 TCGTCAAGGGGATTGGAGTA 57.759 50.000 0.00 0.00 39.54 2.59
158 159 1.358152 TTCGTCAAGGGGATTGGAGT 58.642 50.000 0.00 0.00 39.54 3.85
159 160 2.359900 CTTTCGTCAAGGGGATTGGAG 58.640 52.381 0.00 0.00 39.54 3.86
160 161 2.489938 CTTTCGTCAAGGGGATTGGA 57.510 50.000 0.00 0.00 39.54 3.53
169 170 1.028905 TTTGGCACCCTTTCGTCAAG 58.971 50.000 0.00 0.00 0.00 3.02
170 171 1.339610 CATTTGGCACCCTTTCGTCAA 59.660 47.619 0.00 0.00 0.00 3.18
171 172 0.958091 CATTTGGCACCCTTTCGTCA 59.042 50.000 0.00 0.00 0.00 4.35
172 173 0.958822 ACATTTGGCACCCTTTCGTC 59.041 50.000 0.00 0.00 0.00 4.20
173 174 0.958822 GACATTTGGCACCCTTTCGT 59.041 50.000 0.00 0.00 0.00 3.85
174 175 1.068333 CAGACATTTGGCACCCTTTCG 60.068 52.381 0.00 0.00 0.00 3.46
175 176 2.229784 CTCAGACATTTGGCACCCTTTC 59.770 50.000 0.00 0.00 0.00 2.62
176 177 2.242043 CTCAGACATTTGGCACCCTTT 58.758 47.619 0.00 0.00 0.00 3.11
177 178 1.915141 CTCAGACATTTGGCACCCTT 58.085 50.000 0.00 0.00 0.00 3.95
178 179 0.610232 GCTCAGACATTTGGCACCCT 60.610 55.000 0.00 0.00 0.00 4.34
179 180 1.598701 GGCTCAGACATTTGGCACCC 61.599 60.000 0.00 0.00 0.00 4.61
180 181 0.610232 AGGCTCAGACATTTGGCACC 60.610 55.000 0.00 0.00 0.00 5.01
181 182 2.113860 TAGGCTCAGACATTTGGCAC 57.886 50.000 0.00 0.00 0.00 5.01
182 183 2.877097 TTAGGCTCAGACATTTGGCA 57.123 45.000 0.00 0.00 0.00 4.92
183 184 3.565902 GGTATTAGGCTCAGACATTTGGC 59.434 47.826 0.00 0.00 0.00 4.52
184 185 4.780815 TGGTATTAGGCTCAGACATTTGG 58.219 43.478 0.00 0.00 0.00 3.28
185 186 6.150976 TGTTTGGTATTAGGCTCAGACATTTG 59.849 38.462 0.00 0.00 0.00 2.32
186 187 6.245408 TGTTTGGTATTAGGCTCAGACATTT 58.755 36.000 0.00 0.00 0.00 2.32
187 188 5.815581 TGTTTGGTATTAGGCTCAGACATT 58.184 37.500 0.00 0.00 0.00 2.71
188 189 5.189736 TCTGTTTGGTATTAGGCTCAGACAT 59.810 40.000 0.00 0.00 0.00 3.06
189 190 4.530553 TCTGTTTGGTATTAGGCTCAGACA 59.469 41.667 0.00 0.00 0.00 3.41
190 191 4.870991 GTCTGTTTGGTATTAGGCTCAGAC 59.129 45.833 10.25 10.25 41.85 3.51
191 192 4.530553 TGTCTGTTTGGTATTAGGCTCAGA 59.469 41.667 0.00 0.00 0.00 3.27
192 193 4.832248 TGTCTGTTTGGTATTAGGCTCAG 58.168 43.478 0.00 0.00 0.00 3.35
193 194 4.901197 TGTCTGTTTGGTATTAGGCTCA 57.099 40.909 0.00 0.00 0.00 4.26
194 195 5.449177 GCAATGTCTGTTTGGTATTAGGCTC 60.449 44.000 0.00 0.00 0.00 4.70
195 196 4.399303 GCAATGTCTGTTTGGTATTAGGCT 59.601 41.667 0.00 0.00 0.00 4.58
196 197 4.157656 TGCAATGTCTGTTTGGTATTAGGC 59.842 41.667 0.00 0.00 0.00 3.93
197 198 5.895636 TGCAATGTCTGTTTGGTATTAGG 57.104 39.130 0.00 0.00 0.00 2.69
198 199 7.087409 TCATGCAATGTCTGTTTGGTATTAG 57.913 36.000 0.00 0.00 46.80 1.73
199 200 7.459795 TTCATGCAATGTCTGTTTGGTATTA 57.540 32.000 0.00 0.00 46.80 0.98
200 201 5.981088 TCATGCAATGTCTGTTTGGTATT 57.019 34.783 0.00 0.00 46.80 1.89
201 202 5.981088 TTCATGCAATGTCTGTTTGGTAT 57.019 34.783 0.00 0.00 46.80 2.73
202 203 5.771469 CTTTCATGCAATGTCTGTTTGGTA 58.229 37.500 0.00 0.00 46.80 3.25
203 204 4.624015 CTTTCATGCAATGTCTGTTTGGT 58.376 39.130 0.00 0.00 46.80 3.67
204 205 3.430895 GCTTTCATGCAATGTCTGTTTGG 59.569 43.478 0.00 0.00 46.80 3.28
205 206 3.430895 GGCTTTCATGCAATGTCTGTTTG 59.569 43.478 0.00 0.00 46.80 2.93
206 207 3.322828 AGGCTTTCATGCAATGTCTGTTT 59.677 39.130 0.00 0.00 46.80 2.83
207 208 2.895404 AGGCTTTCATGCAATGTCTGTT 59.105 40.909 0.00 0.00 46.80 3.16
208 209 2.522185 AGGCTTTCATGCAATGTCTGT 58.478 42.857 0.00 0.00 46.80 3.41
209 210 4.082625 TGTTAGGCTTTCATGCAATGTCTG 60.083 41.667 0.00 0.00 46.80 3.51
210 211 4.081406 TGTTAGGCTTTCATGCAATGTCT 58.919 39.130 0.00 0.00 46.80 3.41
211 212 4.439305 TGTTAGGCTTTCATGCAATGTC 57.561 40.909 0.00 0.00 46.80 3.06
212 213 4.039004 TGTTGTTAGGCTTTCATGCAATGT 59.961 37.500 0.00 0.00 46.80 2.71
214 215 4.870123 TGTTGTTAGGCTTTCATGCAAT 57.130 36.364 0.00 0.00 34.04 3.56
215 216 4.870123 ATGTTGTTAGGCTTTCATGCAA 57.130 36.364 0.00 0.00 34.04 4.08
216 217 4.870123 AATGTTGTTAGGCTTTCATGCA 57.130 36.364 0.00 0.00 34.04 3.96
217 218 6.476706 GGATAAATGTTGTTAGGCTTTCATGC 59.523 38.462 0.00 0.00 0.00 4.06
218 219 7.775120 AGGATAAATGTTGTTAGGCTTTCATG 58.225 34.615 0.00 0.00 0.00 3.07
219 220 7.961326 AGGATAAATGTTGTTAGGCTTTCAT 57.039 32.000 0.00 0.00 0.00 2.57
220 221 8.902806 CATAGGATAAATGTTGTTAGGCTTTCA 58.097 33.333 0.00 0.00 0.00 2.69
221 222 8.903820 ACATAGGATAAATGTTGTTAGGCTTTC 58.096 33.333 0.00 0.00 33.83 2.62
222 223 8.686334 CACATAGGATAAATGTTGTTAGGCTTT 58.314 33.333 0.00 0.00 35.39 3.51
223 224 8.052748 TCACATAGGATAAATGTTGTTAGGCTT 58.947 33.333 0.00 0.00 35.39 4.35
224 225 7.499232 GTCACATAGGATAAATGTTGTTAGGCT 59.501 37.037 0.00 0.00 35.39 4.58
225 226 7.282224 TGTCACATAGGATAAATGTTGTTAGGC 59.718 37.037 0.00 0.00 35.39 3.93
226 227 8.612619 GTGTCACATAGGATAAATGTTGTTAGG 58.387 37.037 0.00 0.00 35.39 2.69
227 228 9.161629 TGTGTCACATAGGATAAATGTTGTTAG 57.838 33.333 0.18 0.00 35.39 2.34
228 229 8.941977 GTGTGTCACATAGGATAAATGTTGTTA 58.058 33.333 9.31 0.00 35.39 2.41
229 230 7.665559 AGTGTGTCACATAGGATAAATGTTGTT 59.334 33.333 9.31 0.00 35.39 2.83
230 231 7.168219 AGTGTGTCACATAGGATAAATGTTGT 58.832 34.615 9.31 0.00 35.39 3.32
231 232 7.615582 AGTGTGTCACATAGGATAAATGTTG 57.384 36.000 9.31 0.00 35.39 3.33
232 233 9.905713 AATAGTGTGTCACATAGGATAAATGTT 57.094 29.630 9.31 0.00 35.39 2.71
237 238 9.981114 CATGTAATAGTGTGTCACATAGGATAA 57.019 33.333 9.31 0.00 36.74 1.75
238 239 9.143155 ACATGTAATAGTGTGTCACATAGGATA 57.857 33.333 9.31 0.00 36.74 2.59
239 240 8.023021 ACATGTAATAGTGTGTCACATAGGAT 57.977 34.615 9.31 0.00 36.74 3.24
240 241 7.342026 AGACATGTAATAGTGTGTCACATAGGA 59.658 37.037 9.31 0.00 42.51 2.94
241 242 7.492524 AGACATGTAATAGTGTGTCACATAGG 58.507 38.462 9.31 0.00 42.51 2.57
244 245 9.371136 CTTTAGACATGTAATAGTGTGTCACAT 57.629 33.333 9.31 1.32 42.51 3.21
245 246 7.330946 GCTTTAGACATGTAATAGTGTGTCACA 59.669 37.037 0.18 0.18 42.51 3.58
246 247 7.545965 AGCTTTAGACATGTAATAGTGTGTCAC 59.454 37.037 0.00 0.00 42.51 3.67
247 248 7.611770 AGCTTTAGACATGTAATAGTGTGTCA 58.388 34.615 0.00 0.00 42.51 3.58
248 249 9.582431 TTAGCTTTAGACATGTAATAGTGTGTC 57.418 33.333 0.00 0.00 40.87 3.67
249 250 9.587772 CTTAGCTTTAGACATGTAATAGTGTGT 57.412 33.333 0.00 0.00 0.00 3.72
250 251 9.035607 CCTTAGCTTTAGACATGTAATAGTGTG 57.964 37.037 0.00 0.00 0.00 3.82
251 252 7.711339 GCCTTAGCTTTAGACATGTAATAGTGT 59.289 37.037 0.00 0.00 35.50 3.55
252 253 7.171678 GGCCTTAGCTTTAGACATGTAATAGTG 59.828 40.741 0.00 0.00 39.73 2.74
253 254 7.217906 GGCCTTAGCTTTAGACATGTAATAGT 58.782 38.462 0.00 0.00 39.73 2.12
254 255 6.366332 CGGCCTTAGCTTTAGACATGTAATAG 59.634 42.308 0.00 0.00 39.73 1.73
255 256 6.183360 ACGGCCTTAGCTTTAGACATGTAATA 60.183 38.462 0.00 0.00 39.73 0.98
256 257 5.057149 CGGCCTTAGCTTTAGACATGTAAT 58.943 41.667 0.00 0.00 39.73 1.89
257 258 4.081309 ACGGCCTTAGCTTTAGACATGTAA 60.081 41.667 0.00 0.00 39.73 2.41
258 259 3.449737 ACGGCCTTAGCTTTAGACATGTA 59.550 43.478 0.00 0.00 39.73 2.29
259 260 2.236395 ACGGCCTTAGCTTTAGACATGT 59.764 45.455 0.00 0.00 39.73 3.21
260 261 2.906354 ACGGCCTTAGCTTTAGACATG 58.094 47.619 0.00 0.00 39.73 3.21
261 262 3.449737 TGTACGGCCTTAGCTTTAGACAT 59.550 43.478 0.00 0.00 39.73 3.06
262 263 2.827322 TGTACGGCCTTAGCTTTAGACA 59.173 45.455 0.00 0.00 39.73 3.41
263 264 3.515330 TGTACGGCCTTAGCTTTAGAC 57.485 47.619 0.00 0.00 39.73 2.59
264 265 3.449737 ACATGTACGGCCTTAGCTTTAGA 59.550 43.478 0.00 0.00 39.73 2.10
265 266 3.793559 ACATGTACGGCCTTAGCTTTAG 58.206 45.455 0.00 0.00 39.73 1.85
266 267 3.431207 GGACATGTACGGCCTTAGCTTTA 60.431 47.826 0.00 0.00 39.73 1.85
267 268 2.629051 GACATGTACGGCCTTAGCTTT 58.371 47.619 0.00 0.00 39.73 3.51
268 269 1.134491 GGACATGTACGGCCTTAGCTT 60.134 52.381 0.00 0.00 39.73 3.74
269 270 0.464452 GGACATGTACGGCCTTAGCT 59.536 55.000 0.00 0.00 39.73 3.32
270 271 0.874607 CGGACATGTACGGCCTTAGC 60.875 60.000 23.17 0.00 38.76 3.09
271 272 0.742505 TCGGACATGTACGGCCTTAG 59.257 55.000 29.35 0.22 37.55 2.18
272 273 0.742505 CTCGGACATGTACGGCCTTA 59.257 55.000 29.35 9.61 37.55 2.69
273 274 1.515954 CTCGGACATGTACGGCCTT 59.484 57.895 29.35 0.00 37.55 4.35
274 275 2.423898 CCTCGGACATGTACGGCCT 61.424 63.158 29.35 0.00 37.55 5.19
275 276 2.106332 CCTCGGACATGTACGGCC 59.894 66.667 29.35 10.88 37.55 6.13
276 277 1.065928 CTCCTCGGACATGTACGGC 59.934 63.158 29.35 1.80 37.55 5.68
277 278 0.381089 GTCTCCTCGGACATGTACGG 59.619 60.000 29.35 19.30 37.55 4.02
278 279 0.027716 CGTCTCCTCGGACATGTACG 59.972 60.000 24.84 24.84 38.52 3.67
279 280 3.920144 CGTCTCCTCGGACATGTAC 57.080 57.895 0.00 0.00 36.12 2.90
297 298 1.808411 CATGCGTATGTATGGTCCCC 58.192 55.000 5.20 0.00 34.88 4.81
321 322 5.473039 TCGAACCATGTAGAGATATGCATG 58.527 41.667 10.16 0.00 41.37 4.06
595 596 6.126273 ACCACCCTACACATCTACTACTGATA 60.126 42.308 0.00 0.00 0.00 2.15
805 2631 0.249031 GACCAAGCCAAACAGTGCAC 60.249 55.000 9.40 9.40 0.00 4.57
807 2633 0.312102 GAGACCAAGCCAAACAGTGC 59.688 55.000 0.00 0.00 0.00 4.40
936 2762 6.713450 GGTACAAGAGAGAACCCACAAATAAA 59.287 38.462 0.00 0.00 0.00 1.40
938 2764 5.546499 AGGTACAAGAGAGAACCCACAAATA 59.454 40.000 0.00 0.00 32.10 1.40
1040 2866 3.907130 CCATGCCCCTCCCCATCC 61.907 72.222 0.00 0.00 0.00 3.51
1041 2867 2.778278 TCCATGCCCCTCCCCATC 60.778 66.667 0.00 0.00 0.00 3.51
1042 2868 3.105928 GTCCATGCCCCTCCCCAT 61.106 66.667 0.00 0.00 0.00 4.00
1043 2869 4.692041 TGTCCATGCCCCTCCCCA 62.692 66.667 0.00 0.00 0.00 4.96
1044 2870 3.813724 CTGTCCATGCCCCTCCCC 61.814 72.222 0.00 0.00 0.00 4.81
1045 2871 3.813724 CCTGTCCATGCCCCTCCC 61.814 72.222 0.00 0.00 0.00 4.30
1053 2879 2.074948 CCCCTCCTCCCTGTCCATG 61.075 68.421 0.00 0.00 0.00 3.66
1410 3236 2.159421 CGTAAGCTCTTCGTTGCCTCTA 60.159 50.000 0.00 0.00 0.00 2.43
1429 3255 2.768527 ACAGGTCAATCATCTCATCCGT 59.231 45.455 0.00 0.00 0.00 4.69
1591 3423 2.539476 CAGAAACCAGCCAACAACAAC 58.461 47.619 0.00 0.00 0.00 3.32
1613 3445 3.512329 TCGAGTACAGTTTCAAGCCCATA 59.488 43.478 0.00 0.00 0.00 2.74
1715 3554 8.383175 TGCTCTTATATAAATTTACAGAGGGGG 58.617 37.037 18.34 5.27 0.00 5.40
1716 3555 9.965902 ATGCTCTTATATAAATTTACAGAGGGG 57.034 33.333 18.34 2.90 0.00 4.79
1778 3617 8.035984 GCAAGAACTACTCCTCTGTAAACTAAT 58.964 37.037 0.00 0.00 0.00 1.73
1779 3618 7.376615 GCAAGAACTACTCCTCTGTAAACTAA 58.623 38.462 0.00 0.00 0.00 2.24
1780 3619 6.071503 GGCAAGAACTACTCCTCTGTAAACTA 60.072 42.308 0.00 0.00 0.00 2.24
1781 3620 5.279556 GGCAAGAACTACTCCTCTGTAAACT 60.280 44.000 0.00 0.00 0.00 2.66
1782 3621 4.930405 GGCAAGAACTACTCCTCTGTAAAC 59.070 45.833 0.00 0.00 0.00 2.01
1783 3622 4.838986 AGGCAAGAACTACTCCTCTGTAAA 59.161 41.667 0.00 0.00 0.00 2.01
1784 3623 4.220821 CAGGCAAGAACTACTCCTCTGTAA 59.779 45.833 0.00 0.00 0.00 2.41
1785 3624 3.764434 CAGGCAAGAACTACTCCTCTGTA 59.236 47.826 0.00 0.00 0.00 2.74
1786 3625 2.564947 CAGGCAAGAACTACTCCTCTGT 59.435 50.000 0.00 0.00 0.00 3.41
1787 3626 2.564947 ACAGGCAAGAACTACTCCTCTG 59.435 50.000 0.00 0.00 0.00 3.35
1788 3627 2.896039 ACAGGCAAGAACTACTCCTCT 58.104 47.619 0.00 0.00 0.00 3.69
1789 3628 4.803098 TTACAGGCAAGAACTACTCCTC 57.197 45.455 0.00 0.00 0.00 3.71
1790 3629 4.593634 ACTTTACAGGCAAGAACTACTCCT 59.406 41.667 0.00 0.00 0.00 3.69
1791 3630 4.691216 CACTTTACAGGCAAGAACTACTCC 59.309 45.833 0.00 0.00 0.00 3.85
1792 3631 5.298347 ACACTTTACAGGCAAGAACTACTC 58.702 41.667 0.00 0.00 0.00 2.59
1793 3632 5.291905 ACACTTTACAGGCAAGAACTACT 57.708 39.130 0.00 0.00 0.00 2.57
1794 3633 7.486802 TTTACACTTTACAGGCAAGAACTAC 57.513 36.000 0.00 0.00 0.00 2.73
1795 3634 7.934665 TCATTTACACTTTACAGGCAAGAACTA 59.065 33.333 0.00 0.00 0.00 2.24
1796 3635 6.770785 TCATTTACACTTTACAGGCAAGAACT 59.229 34.615 0.00 0.00 0.00 3.01
1807 3646 9.607285 CCACACATTTAGTCATTTACACTTTAC 57.393 33.333 0.00 0.00 0.00 2.01
1808 3647 9.344772 ACCACACATTTAGTCATTTACACTTTA 57.655 29.630 0.00 0.00 0.00 1.85
1809 3648 8.232913 ACCACACATTTAGTCATTTACACTTT 57.767 30.769 0.00 0.00 0.00 2.66
1810 3649 7.040686 GGACCACACATTTAGTCATTTACACTT 60.041 37.037 0.00 0.00 0.00 3.16
1811 3650 6.430000 GGACCACACATTTAGTCATTTACACT 59.570 38.462 0.00 0.00 0.00 3.55
1812 3651 6.430000 AGGACCACACATTTAGTCATTTACAC 59.570 38.462 0.00 0.00 0.00 2.90
1831 3670 7.058525 TCAAGAGATACGTTATTCTAGGACCA 58.941 38.462 0.00 0.00 0.00 4.02
1871 3711 9.232473 AGAACTGGGAATATAAAGAGTTCAAAC 57.768 33.333 0.00 0.00 41.06 2.93
1899 3739 9.043079 GGCAGCTAGGTAGTTTAATTAGTTAAG 57.957 37.037 0.00 0.00 31.81 1.85
1963 3803 4.561500 TGGTCATGTAAATCCGGAAGAA 57.438 40.909 9.01 0.00 0.00 2.52
1991 3831 2.368875 CCTAGGACAAGGCGATACCAAT 59.631 50.000 1.05 0.00 43.14 3.16
1998 3838 0.252103 AGTTCCCTAGGACAAGGCGA 60.252 55.000 11.48 0.00 35.09 5.54
2046 3886 9.787435 TGTTCACTATATGTAAACAGGAGTTTT 57.213 29.630 0.00 0.00 45.32 2.43
2048 3888 8.812972 TCTGTTCACTATATGTAAACAGGAGTT 58.187 33.333 15.48 0.00 40.82 3.01
2049 3889 8.362464 TCTGTTCACTATATGTAAACAGGAGT 57.638 34.615 15.48 0.00 40.82 3.85
2050 3890 9.823647 AATCTGTTCACTATATGTAAACAGGAG 57.176 33.333 15.48 0.00 40.82 3.69
2059 3899 9.137459 AGTGCTAGTAATCTGTTCACTATATGT 57.863 33.333 0.00 0.00 32.02 2.29
2060 3900 9.404348 CAGTGCTAGTAATCTGTTCACTATATG 57.596 37.037 0.00 0.00 32.30 1.78
2061 3901 8.085296 GCAGTGCTAGTAATCTGTTCACTATAT 58.915 37.037 8.18 0.00 32.30 0.86
2062 3902 7.068226 TGCAGTGCTAGTAATCTGTTCACTATA 59.932 37.037 17.60 0.00 32.30 1.31
2063 3903 6.127338 TGCAGTGCTAGTAATCTGTTCACTAT 60.127 38.462 17.60 0.00 32.30 2.12
2064 3904 5.185056 TGCAGTGCTAGTAATCTGTTCACTA 59.815 40.000 17.60 0.00 32.30 2.74
2097 3937 2.558795 AGTTGTCTGTCGTGAGCATACT 59.441 45.455 0.00 0.00 0.00 2.12
2128 3968 6.466308 AAATTGCAAAAATTAAGGCGTCTC 57.534 33.333 1.71 0.00 0.00 3.36
2189 4032 4.637534 ACATAAGAATGCGCATGTTTCTCT 59.362 37.500 26.09 19.32 36.50 3.10
2191 4034 4.970662 ACATAAGAATGCGCATGTTTCT 57.029 36.364 26.09 20.81 36.50 2.52
2345 4188 4.275936 ACAAAAGAAAGTGCGTATGCTTCT 59.724 37.500 8.69 6.30 43.34 2.85
2349 4192 5.635549 AAAACAAAAGAAAGTGCGTATGC 57.364 34.783 0.00 0.00 43.20 3.14
2376 4219 4.230657 CGGCCAAACGAATTGTTAATCAA 58.769 39.130 2.24 0.00 40.84 2.57
2377 4220 3.366476 CCGGCCAAACGAATTGTTAATCA 60.366 43.478 2.24 0.00 40.84 2.57
2378 4221 3.175929 CCGGCCAAACGAATTGTTAATC 58.824 45.455 2.24 0.00 40.84 1.75
2379 4222 2.559231 ACCGGCCAAACGAATTGTTAAT 59.441 40.909 0.00 0.00 40.84 1.40
2380 4223 1.955080 ACCGGCCAAACGAATTGTTAA 59.045 42.857 0.00 0.00 40.84 2.01
2381 4224 1.606903 ACCGGCCAAACGAATTGTTA 58.393 45.000 0.00 0.00 40.84 2.41
2382 4225 1.606903 TACCGGCCAAACGAATTGTT 58.393 45.000 0.00 0.00 44.59 2.83
2396 4239 6.817765 AAATCAATATACTGCCAATACCGG 57.182 37.500 0.00 0.00 0.00 5.28
2398 4241 9.248291 CACAAAAATCAATATACTGCCAATACC 57.752 33.333 0.00 0.00 0.00 2.73
2401 4244 7.278424 GCACACAAAAATCAATATACTGCCAAT 59.722 33.333 0.00 0.00 0.00 3.16
2404 4247 6.332630 AGCACACAAAAATCAATATACTGCC 58.667 36.000 0.00 0.00 0.00 4.85
2405 4248 7.816945 AAGCACACAAAAATCAATATACTGC 57.183 32.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.