>input_sequence_79382
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-------------------------ATGGACATGGGGAGGGGGATGGGGATGGGGATGGGGATGGGGATGGGGAGGGGCA
TGGACAGGGAGGAGGGGCTCAACCTCAGCTTGTCACTGCAGCGGTCGCCTTCGTCGCCGCCGAGATTCCAGGCGGTGTTC
GCCTGCTGCTACTGCCCCAGGAAGTTCAGGAGCTCGCAGGCGCTCGGCGGCCACCAGAACGCGCACAAGGTCCAGCGCAA
CCTGGCCAGGCGAGGCCGGGACGCCACCACGGCGCTGTCGTTGGCGGCGGCGGGAGATCAAGGTAAGGCCGTCGTCGATG
ACGACAGCGCTCCGCTGCGCCCAGCAGACCCCGACGCCGCCGACGCGTGGGGAGGTGGGAGGGTCTACCCTCCTCATCGC
CAGCAGGGCTCGGGAGCAGCCTCGTCCGGTGCGGCTAGAGGCAACGAAGAGCTTACGGATGAGATGATTGACCTGTCCCT
GAAGCTATGA----------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G329000
TTATGTGGTGAGAGATGATCTCGTAATTAATAGGGTTTACAAAACCAAAATCTCTTAATTAAGAGAAGGCAAAACTTTTC
TTTTCTAGTTTCTCTTCATTTCAGCATTTATCCTATGTTTTTTTTAGAAAAGGAGGATGTACCCCCGGCCTCTGTGCTAC
TCCAATCCCCTTGACGAAAGGGTGCCAAATGTCTGAGCCTAATACCAAACAGACATTGCATGAAAGCCTAACAACATTTA
TCCTATGTGACACACTATTACATGTCTAAAGCTAAGGCCGTACATGTCCGAGGAGACGGGGACCATACATACGCATGCAA
TCATGCATATCTCTACATGGTTCGATCAGGGGCTTGGCTTTTGCTGGGCTATGTACCCAGTACATACCAATGTTAGCTAG
GTAGATTGATCTAGTGCATTCCTAATAGGACATCGGCCATGTCTGTGGCTATGAAAGCCTACCCGTGTTGGCCCTTGGAC
CCGTGCTGCACCGCAACTGCATAGGAGCGCAGCCAGCACAGTGCCATGCACATACACATCGAACAGTTCCGAGGTGAAAG
CTAGCTATAAGGCGGAAACGGCACGGGGACATGTATATCAGTAGTAGATGTGTAGGGTGGTCATTGATCGCGAGAGCACT
GAGCAGGCAACAGGCCAGGAAAGAGAGGCGCGGATTAACCATCCTCGGCAAGCATGCATGCA--------GCAGGACGCA
GCGTCTCAGGCAGTCAGGCTCAGGCGCCGGGCGTTGCGTTGAGTGCCGTCAGTTTCATAGCTGGTTTTTACTGCAAAT--
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-------------------------------------------------------ATGTGTCCATGGAGTGTGCACTGTT
TGGCTTGGTCTCCGACAGGGCAGCCCCACATCGACCCCCGGCCTCGCCATAATATCATGGCACCTCTCCGGGGGAGGGAG
CTGCCTGATTGATTGCCACATTGTGGATATCCACTTCCAGTTTTATTTGTGGGTTCTCTCTTGTACCTGAGGTAGCTAAG
CCTGTCGCCCGGCGCCGGTTGCGACATGGACATGGGGAGGGGGATGGGGATGGGGATGGGGATGGGGATGGGGAGGGGCA
TGGACAGGGAGGAGGGGCTCAACCTCAGCTTGTCACTGCAGCGGTCGCCTTCGTCGCCGCCGAGATTCCAGGCGGTGTTC
GCCTGCTGCTACTGCCCCAGGAAGTTCAGGAGCTCGCAGGCGCTCGGCGGCCACCAGAACGCGCACAAGGTCCAGCGCAA
CCTGGCCAGGCGAGGCCGGGACGCCACCACGGCGCTGTCGTTGGCGGCGGCGGGAGATCAAGGTAAGGCCGTCGTCGATG
ACGACAGCGCTCCGCTGCGCCCAGCAGACCCCGACGCCGCCGACGCGTGGGGAGGTGGGAGGGTCTACCCTCCTCATCGC
CAGCAGGGCTCGGGAGCAGCCTCGTCCGGTGCGGCTAGAGGCAACGAAGAGCTTACGGATGAGATGATTGACCTGTCCCT
GAAGCTATGATCGCTC------GATGAAGGAGCATGAGCTAGCTAGCTTGGCCCGAGCGGCATGAAGTTCCCCTCTTCCA
TTTGTTTCATTTCTGCGCGTCATTTCTTGTGTGTTTTTCTGCTATCGCTTATCAGGTTAATTGTTGTTGTTGGCTGGTTT
CTGCTATGGGCTTGAAACTGTACTCGATCTTCAGGTATCTCCATGCATGGAT--TGTTAACTACACTGATCAGAAGCC--
---TTTTATGGAACTGTTTGCAGTAATCTACTACCCCCTCTGTAAATTTATATAAGAGCATTTAGATCACTATTTTAGTA
TTCTAAACAATCTTATATTAGTTTACAGAGGAGTAGTTCTTGCCTGTAAAGTGTAAATGACTAAATGTGTGGTCCTAGAA
TAACGTATCTC-TTGATAAATCTAGAGTAAGTTTGAACTCTTTATATTCCCAGTTCTGCTTAACTAATTAAACTACCTAG
CTGCCTCCTTGTTGCTTCAAGGGTTTATCATGATCAGTTTAATTCTTCCGGATTTACATGACCAATCGCCATTGGTATCG
CCTTGTCCTAGGGAACTCCTGATTACATATATCCCGCAAAAAAAAAAAACTCCTGTTTACATATAGTGAACAGATTACTA
GCACTGCACACTATCTAGTATGCTCACGACAGACAACTGTCTCAGATGAGACGCCTTAATTTTTGCAATTTACATCCTTG
CGTGAT---ATAATATATATGCTTAATTATAAGAGAAACATGCGCATTCTTATGTTTTTTAGGGATTTCTTTTTTAGGGA
AGCATTCTTATGTTTTTTAATTGAGAGGCAATGCGTTTGGCCGGTGCTTTCAGTATATTGATTTACATCCTTGCGTGCTA
TAATAGTATAATATGCCTAATTTTAGCAGAAGCATACGCACTTTCTTTTGTTTTTAAATTGATTAACAATTCGTTTGGCC
GGTATTGGCAGTATATTGATTTTTG-TGTGCTTAGATATAAGCTAGTACTGCGTGGGGTATTGGCTGT
>chr2A_282
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-----------------------------------------ACATGCCCGAGGAGACAGGGACCATACATACCCATGCAA
TGATGCATATCTCTACATGGTTCGATCAGGGGCTTGGCTTTTGCTGGGCTATGTACCCAGTACATATCAATGTTAGCTAG
GTAGATTGATCTAGTGCATTCCTAATAGGACATCGGCCATGTCTGTGGCCATGAAAGCCTACCCGTGTTGGCCTTTGGAC
CCGTGCTGCACCGCAACTGCATAGGAGCGCAGCCAGCACAGTGCCATGCACATACACATCGAACAGTTCCGATGTGAAAG
CTAGCTATAAGGCGGAAACGGCTCGGGGACATGTAGATCAGTAGTAGATGTGTAGGGTGGTCATTGATCGCGAGAGCACT
GACCAGGCAACAGGCCAGGAAAGAGAGGCGCGGATTAACCATCCTCGGCAAGCATGCATGCTCCAGGAGTGCAGGACGCA
GCGTCTCAGGCAGTCAGGCTCGGGCGCCGGGCGTTGCGTTGAGTGCCGTCAGTTTCATAGCTGGTTTTTACTGCAAAT--
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-------------------------------------------------------ATGTGTCCATGGAGTCTCCACTGTT
TGGCTTGGTCTCCGACAGGGCAGCCCCACATCCACCCCCGGCCGCGCCATAATATCATGGCACCTCTCCGGGGGAGGGAG
CTGCCTGATTGATTGCCACATTGTGTATATCCACTTCCAGTCTCATTTGTGGGTTCTCTCTTGTACCTGAGGTAGCTA-G
CCTGTCGCCCGGCGCCGGTTGCGACATGGACATGGGGAGGGGGATGGGGATGGGGATGGGGATGG------GGAGGGGGA
TGGACAGGGAGGACGGGCTCAACCTCAGCTTGTCACTGCAGCGGTCGCCTTCGTCGCCGCCGAGGTTCCAGGCGGTGTTC
GCCTGTTGCTACTGCCCCAGGAAGTTCAGGAGCTCGCAGGCGCTCGGCGGCCACCAGAACGCGCACAAGGTCCAGCGCAA
CCTGGCCAGGCGAGGCCGGGACGCCACCACGGCGCTGTCGTTGGCGGCGGCGGGAGATCAAGGTAAGGCCGCCGTCGATG
ACGACAGCGCTCCGCTGCGCCCAGCGGACCCCGACGCCGCCGACGCGTGGGGAGGGGGGAGGGTCTACCCTCCTCATCGC
CAGCAGGGCTCGGGAGCAGCCTCGTCCGGTGCGGCAAGAGGCAACGAAGAGCTTGCGGATGAGATGATTGACCTGTCCCT
GAAGCTATGATCGCTCGATTCAGATGCAGGAGCATGGGCTAGCTAGCTTGGCCCGAGCGGCATGAAGTTCCCCTCTTCCA
TTTGTTTCATTTCTGCGCGTCATTTCTTGTGTGTGTTTCTGCTATCGCTTATCAGGTTAATTATTGTTGTTGGCTGGTTT
CTGCAATGGGCTTGAAACTGTACTCGATCTTCAGGTATCTCCATGCATGGATATTGTTAACTATACTGATCAGAAGCCTT
TTATTTTATGGAACTGTTTGCAGTAATCTACTA-----------------------------------------------
-----------------------------------GTTCTTGCC-------TGTAAATGACAAAATGTGCGGTCCTAGAA
TAACTTATCTCTTTGATAAATCTAGAGTAATGTTGAACTCTTTACATTCCCAGTTCTGGTTAACTAATTCAACTACCTAG
CTGCCTCCTTGTTGCTTCAAGGGTTTCTCATGATCAGTTTAACTCTTCCGGATTTACATGACCAATTGCCGTTGGTAGGG
CCTTGTCCTAGGGAACTCCTGTTTAGATA---------------------------------------------------
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>chr2D_282
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-----------------------------------------ACATGTCCGAGGAGACAGGGACCATAGATACGCATGCAA
TGATGCATATCTCTACATGGTTCGATCTGGGGCTTGGCTTTTGCTGGGCTGTGTACCCAGTACATACCAACGTTAGCTAT
GTAGGTTGATCTAGTGCATTCCTAATAGGACATCGGCCATGTCTGTGGCTATGAAAGCCTACCCGTGTTGGCCCTTGGAC
CCTTGCTGCACCGCAACTGCATAGGAGCGCAGCCAGCACAGTGCCATGCACATACACATCGAACAGTTCCGAGGTGAAAG
CTAGCTATAAGGCGGAAACGGCACGGGGACATGTAGATCAGTAGTAGATGTGTAGGGTGGTCATTGATCGCGAGAGCACT
GACCAGGCAACAGGCCAGGAAAGAGAGGCGCGGATTAACCATCCTCGGCAAGCATGCATGCAGCAGGAGTGCAGGACGCA
GCGTCTCAGGCAGTCAGGCTCAGGCGCCGGCCGTTGCGTTGAGTGCCGTCAGTTTCATAGTTGGTTTTTACTGCAAATAT
GTGTGATGGCAATAAGCCATGCACACGGCCATGGCGACTGGCATGAAGATGACCAGATTGAGTCCGTAGCGTGTGTGTCC
CCCAGCGTGAGCCCGTGGTTGCGTTCGTGAAGTGGAGGAGCTGCATGCGGGGAGCCGTTGCGATCTGTTGGAGTCAGGTG
CGGCGTGCGCGCGGCTGGAGGGAGTTAGTTGCAAGCTAGCTAGATGGTTGGCCCGGCGGGTCATGTGGTCATGCATGGGC
TAGCCCGGCGGGTCATGTGGTCATGCATGGATATGAATCCTGCATGTAGTGGTTAGCTTAGTGCGTGAGTTAGTTGCCGG
GTGTGCCAGCCGTGTGGTGTGTGTGCACGGGTATAAAAAACCCTCCTCCGTATATTGATCGAGTTGCGCCGGTGTGGAGC
CGAGGGTAGCCATGTAGCCACTGTAAAGAGGAAAAGGATTGGGGCGTTCGTGCGTCCATGGCGGCGTTTGTGCGCCGGCC
CGAAATTTCTTGTGTCTTGTGTCTTCTTCTACCTTTAGCCGTGTGTGAGAGAGGAGGCTGCGGTTCCAACAATTGGTATC
ATGAGCTTAGTGTCTTGGGCGTGCTTGCCGTGACGGAGGCGTGGCAGCGATGGCGGCGCTCGCCGGTGGCTGCACGACGG
AGCTCCGGGCCGTGTGTGGGCCCAAGGAGGTGGGCGGCGTTGTGGCTGTCATGGTGCGTGGCGGAGGCGGCGGGCGGTGA
CGTCGTACGTGCGGCGACCGCGGAGGCCGGCGAGGCGCTGCGTGGTGGCGCAGGGGCGCAGCATGGCGTGGAGGCACTAC
ATGGCGGCATGGAGGCCGCGGCGGTGCAGGGCAATAAGCCGTGGCGGCGAGCCGGGCGCGACCGGTGCGTGTTATGGGTG
CGCACTGGACGTGTCGGGACCGCGGGCGCGCGGTGAGCGTTTGGTGCAGTCGGACTCGTCGAGCGCGTCGGATGCGCGCG
GGACGTGCGGGACGCACTGGTGTGGTCGGGCTCGTCGGGCGCGTCGGATGCGCGCGGGACATGCGGGACGCACTATTGCG
GTCGGGCGCGTCGGGTGCGCGCGAGACATGCGGGGCGCCGAGGGACGCCAGGCATGTGTCGCCGGCGGAGAAGGAGCTCG
GCGTGTGTCGCCGGAGTCGTGACGGAGCACGATGCGACCGGCGTCGTTGCGCCAGGTCGGGTCCGCGGACTGGGTCACGG
TCGTGGCGAGATCGATGACGGGAGGTGCAACAACTCCGACGACGACGATGTCATGGCTTAGGGGGTGAGTGATGGCAATA
AGCCATGCACACGGCCATGGCGACTGGCATGAAGATGACCAGATTGAGTCCGTAGCGTGTGTGTCCCCCAGCGTGAGCCC
GTGGTTGCGTTCGTGAAGTGGAGGAGCTGCATGCGGGGAGCCGTTGCGATCTGTTGGAGTCAGGTGCGGCGTGCGCGCGG
CTGGAGGGAGTTAGTTGCAAGCTAGCTAGATGGTTGGCCCGGCGGGTCATGTGGTCATGCATGGGCTAGCCCGGCGGGTC
ATGTGGTCATGCATGGATATGAATCCTGCATGTAGTGGTTAGCTTAGTGCGTGAGTTAGTTGCCGGGTGTGCCAGCCGTG
TGGTGTGTGTGCACGGGTATAAAAAACCCTCCTCCGTATATTGATCGAGTTGCGCCGGTGTGGAGCCGAGGGTAGCCATG
TAGCCACTGTAAAGAGGAAAAGGATTGGGGCGTTCGTGCGTCCATGGCGGCGTTTGTGCGCCGGCCCGAAATTTCTTGTG
TCTTGTGTCTTCTTCTACCTTTAGCCGTGTGTGAGAGAGGGCTGCGGTTCCAACAATGTGTCCATGGAGTCTCCACTGTT
TGGCTTGCTCTCCGACAGGGCAGCCCCACATCCACCCCCGGCCGCGCCATAATATTATGGCACCTCTCCGGGGGAGGGAG
CTGCCTGATTGATTGCCACATTGTGTATATCCACTTCCAGTCTCATTTGTGGGTTCTCTCTTGTACCTGAGGTAGCTA-G
CCTGTCGACCGGCGCCGGTCGCGACATGGACATGGGGAGGGGGATGGGGATGGGGATGGG------------GAGGGGGA
TGGACAGGGAGGAGGGGCTCAACCTCAGCTTGTCACTGCAGCGGTCGCCTTCGTCGCCGCCGAGGTTCCAGGCGGTGTTC
GCCTGCTGCTACTGCCCCAGGAAGTTCAGGAGCTCTCAGGCTCTCGGCGGCCACCAGAACGCGCACAAAGTCCAGCGCAA
CCTGGCCAGGCGAGGCCGGGACGCCACCACCGCGCTGTCGTTGGCGGCAGCAGGAGAGCAAGGTAAGGCCGCCGTCGATG
ACGACAGCGCTCCGCTGCGCCTAGCGGACCCTGACGCCGCCGACGCGTGGGGAGGAGGGAGGGTCTACCCTCCTCATCGC
CAGCAGGGCTCGGGAGCAGCCTCGTCCGGTGCGGCAAGAGGCAACGAAGAGCTTGCGGATGAGATGATTGACCTGTCCCT
GAAGCTATGATCGCTC------GATGCAGGAGCATGGGCTAGCTAGCTTGGCCCGAGCGGCTTGAAGTTCCCCTCTTCCA
TTTGTTTCATTTCTGCGCGTCATTTCTTGTGTGTGTTTCTGCTATCGCTTATCAGGTTAATTATTGTTGTTGGCTG----
-------GGGCTTGAAACTGTACTCGATCTTTAGGTATCTCCATGCATGGAT--TATTACCTACACTGATCAGAAGCC--
---TTTTATTGAACTGTTTGCAGTAATCTACTA-----------------------------------------------
-----------------------------------GTTCTTGCC-------TGTAAATGACTAAATGTGCGGCCCTTGAA
TAACTTGTCTCTTTGATAAATCTAGAGTAATTTTGAACTCTTTACATTCCCAGTTCTGGTTAACTAATTAAACTACCTAG
CTGCCTCCTTGTTGCTTCAAGGGTTTATCATGATCAGTTCAACTCTTCCGGATTTACATGACCAATCGCCGTTGGTAGCG
CCTTGTCCTAGGGAACTCCTGTATACAG------------------------------------AGTGAACAGATTACTA
GCACTGCACACTATCTTGTATACTCATGACAGACAT-TGTCTCAGATCAGACGCCTTAATTTTTGCGATTTACATCCTTG
CCTGATATAATAATATATATGCTTAATTATAGGGGAAACGTGCTCAT---------------------------------
-----TCTTATGTTTTTTAATTGAGAGGCAATGCGTTTGGCCGGTGCTTTCAGTATATTGATTTACATCCTTGCGTGATA
TAATAATATAATATGCCTAATTTTAGCGGAAATATACGTATTTTCTTTTTTTTAATTAAGAG---ACAATTCATTTGGTC
TGTGTTTTCAGTATATTGATTTTTTTTGTGCTTAGATATAAGCTAGTACTGC----------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S----------------------
-S------------------------------------------------------------------------------
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-----------------------------------S--------------------------------------------
--S-----------------------------------------------------------------------------
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----------------------------------------------------------------------S-S-------
--------------------------------S----------S------------------------------------
-------------------------S---------------S-S----------------------------------S-
-----------------------------------------------------------------SSSSSS-------S-
----------------------------------------------------------------S---------------
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-----------------------------------------------------------------------S--------
-------------------------S-----------------------------S------------------------
-----------------------------------S------------------S-------------------------
--------------------------S---------S-------------------------------------------
----------------------------------S---------------------------S-----------------
----S---------------------------------------------------------------------------
---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SSSSSSS------------------S----------
----S-------------------------S-------------S-------------S---------------------
------------------------------------------S---------------------------S------S--
---------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
----------------S----S----S--------SS----------S------------------S-------------
-S-----------------------------S-S-----S---S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS------------------------------------------------------------------------S--
-----S---------------------S---SS-----S-S--------S---SSSS-SSSSSSS-------S-----S-
S--S--SS----------------S---------------------------SSSSSSSSSSSSSSSS
>forward_298
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--------------------------------------CGTACATGTCCGAGGAGACG----------------------
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>reverse_3838
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-----------------------------------------------------------------------------TCG
CCTTGTCCTAGGGAACT---------------------------------------------------------------
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