Multiple sequence alignment - TraesCS2B01G325900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G325900 chr2B 100.000 3655 0 0 1 3655 465655979 465652325 0.000000e+00 6750
1 TraesCS2B01G325900 chr2B 93.789 322 20 0 547 868 230216753 230216432 5.490000e-133 484
2 TraesCS2B01G325900 chr2B 93.750 320 20 0 549 868 222587362 222587043 7.100000e-132 481
3 TraesCS2B01G325900 chr2B 87.129 101 6 6 3265 3358 117615379 117615479 1.390000e-19 108
4 TraesCS2B01G325900 chr2D 92.804 2140 112 13 866 2975 394051069 394048942 0.000000e+00 3061
5 TraesCS2B01G325900 chr2D 87.425 668 65 9 2963 3615 394048926 394048263 0.000000e+00 750
6 TraesCS2B01G325900 chr2D 85.072 556 65 11 3 547 394051613 394051065 5.330000e-153 551
7 TraesCS2B01G325900 chr7B 93.168 322 22 0 547 868 572960280 572959959 1.190000e-129 473
8 TraesCS2B01G325900 chr7B 92.857 322 23 0 547 868 671012414 671012093 5.530000e-128 468
9 TraesCS2B01G325900 chr2A 93.168 322 22 0 547 868 40502631 40502310 1.190000e-129 473
10 TraesCS2B01G325900 chr2A 92.857 322 23 0 547 868 493336271 493336592 5.530000e-128 468
11 TraesCS2B01G325900 chr2A 80.081 246 41 5 7 250 666985328 666985567 3.750000e-40 176
12 TraesCS2B01G325900 chr2A 78.491 265 49 5 7 269 53289297 53289039 2.260000e-37 167
13 TraesCS2B01G325900 chr2A 79.134 254 39 7 7 254 75287103 75286858 2.920000e-36 163
14 TraesCS2B01G325900 chr6B 92.857 322 23 0 547 868 543237268 543237589 5.530000e-128 468
15 TraesCS2B01G325900 chr6B 94.118 85 3 1 3269 3351 561275676 561275760 1.070000e-25 128
16 TraesCS2B01G325900 chr3D 92.331 326 25 0 543 868 210410473 210410148 7.150000e-127 464
17 TraesCS2B01G325900 chr5B 91.843 331 26 1 535 865 108838491 108838162 9.250000e-126 460
18 TraesCS2B01G325900 chr5B 80.970 268 44 6 8 269 112535797 112535531 4.780000e-49 206
19 TraesCS2B01G325900 chrUn 79.693 261 44 6 7 265 110516393 110516140 2.900000e-41 180
20 TraesCS2B01G325900 chrUn 96.104 77 2 1 3275 3351 110687409 110687484 1.380000e-24 124
21 TraesCS2B01G325900 chr1A 79.245 265 46 7 7 269 20239639 20239896 3.750000e-40 176
22 TraesCS2B01G325900 chr6D 78.868 265 49 5 7 269 454889277 454889536 4.850000e-39 172
23 TraesCS2B01G325900 chr6D 78.491 265 50 5 7 269 454922832 454923091 2.260000e-37 167
24 TraesCS2B01G325900 chr4A 95.062 81 1 1 3273 3353 615196440 615196363 1.380000e-24 124
25 TraesCS2B01G325900 chr7D 91.209 91 4 1 3265 3351 199127613 199127703 1.780000e-23 121
26 TraesCS2B01G325900 chr7D 91.667 84 5 2 3272 3354 89070811 89070893 8.290000e-22 115
27 TraesCS2B01G325900 chr3B 91.860 86 3 3 3276 3357 59325929 59326014 2.310000e-22 117
28 TraesCS2B01G325900 chr5D 90.698 86 5 3 3273 3355 180255714 180255629 1.070000e-20 111
29 TraesCS2B01G325900 chr5A 90.588 85 5 3 3269 3351 275334961 275335044 3.860000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G325900 chr2B 465652325 465655979 3654 True 6750 6750 100.000000 1 3655 1 chr2B.!!$R3 3654
1 TraesCS2B01G325900 chr2D 394048263 394051613 3350 True 1454 3061 88.433667 3 3615 3 chr2D.!!$R1 3612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
394 398 0.036010 AAGAGAACTCACATGGGCCG 60.036 55.0 0.00 0.00 0.0 6.13 F
1663 1675 0.097325 GCTAGTCGTCGACTCCTGTG 59.903 60.0 30.11 16.63 42.4 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 1844 0.034896 ACCGAGAAGCCGTTGTTGAT 59.965 50.0 0.0 0.0 0.00 2.57 R
3602 3687 0.034059 GCTACCACTCACAGCACTGT 59.966 55.0 0.0 0.0 46.17 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.246360 CGCTCACATACACTCACCCA 59.754 55.000 0.00 0.00 0.00 4.51
23 24 4.022329 CGCTCACATACACTCACCCATATA 60.022 45.833 0.00 0.00 0.00 0.86
40 41 4.497842 CCATATAAACGCATGCACACACAT 60.498 41.667 19.57 5.21 0.00 3.21
42 43 0.039256 AAACGCATGCACACACATCC 60.039 50.000 19.57 0.00 0.00 3.51
45 46 1.302366 CGCATGCACACACATCCTAT 58.698 50.000 19.57 0.00 0.00 2.57
47 48 1.262417 GCATGCACACACATCCTATCG 59.738 52.381 14.21 0.00 0.00 2.92
61 62 2.965831 TCCTATCGCTATGAGCACCTTT 59.034 45.455 0.00 0.00 42.58 3.11
62 63 4.149598 TCCTATCGCTATGAGCACCTTTA 58.850 43.478 0.00 0.00 42.58 1.85
73 74 3.258228 GAGCACCTTTAAGAGACTGAGC 58.742 50.000 0.00 0.00 0.00 4.26
74 75 2.903135 AGCACCTTTAAGAGACTGAGCT 59.097 45.455 0.00 0.00 0.00 4.09
76 77 3.306364 GCACCTTTAAGAGACTGAGCTGA 60.306 47.826 0.00 0.00 0.00 4.26
77 78 4.622695 GCACCTTTAAGAGACTGAGCTGAT 60.623 45.833 0.00 0.00 0.00 2.90
82 83 9.153479 ACCTTTAAGAGACTGAGCTGATATAAT 57.847 33.333 0.00 0.00 0.00 1.28
111 112 8.712285 TTGAAAATCTACGAAGTTACCATAGG 57.288 34.615 0.00 0.00 37.78 2.57
117 118 2.098770 ACGAAGTTACCATAGGCGTCTC 59.901 50.000 0.00 0.00 37.78 3.36
129 130 4.813526 CGTCTCGCAGTCGACGGG 62.814 72.222 17.45 15.98 43.95 5.28
132 133 2.044555 TCTCGCAGTCGACGGGAAT 61.045 57.895 17.45 0.00 37.02 3.01
142 143 1.823976 GACGGGAATGTCTCCTCCC 59.176 63.158 0.00 0.00 46.97 4.30
157 158 1.001974 CCTCCCACTGAACGAACATCA 59.998 52.381 0.00 0.00 0.00 3.07
159 160 1.414550 TCCCACTGAACGAACATCACA 59.585 47.619 0.00 0.00 0.00 3.58
166 167 1.464997 GAACGAACATCACAGGAAGGC 59.535 52.381 0.00 0.00 0.00 4.35
167 168 0.321653 ACGAACATCACAGGAAGGCC 60.322 55.000 0.00 0.00 0.00 5.19
189 190 7.287696 AGGCCGAAATAAATTCAGGAATAATGT 59.712 33.333 0.00 0.00 37.96 2.71
195 196 9.807649 AAATAAATTCAGGAATAATGTGAGCAC 57.192 29.630 0.00 0.00 0.00 4.40
200 201 4.883585 TCAGGAATAATGTGAGCACCAATC 59.116 41.667 0.00 0.00 0.00 2.67
202 203 6.057533 CAGGAATAATGTGAGCACCAATCTA 58.942 40.000 0.00 0.00 0.00 1.98
203 204 6.713903 CAGGAATAATGTGAGCACCAATCTAT 59.286 38.462 0.00 0.00 0.00 1.98
206 207 8.507249 GGAATAATGTGAGCACCAATCTATAAC 58.493 37.037 0.00 0.00 0.00 1.89
209 210 6.932356 ATGTGAGCACCAATCTATAACTTG 57.068 37.500 0.00 0.00 0.00 3.16
210 211 6.048732 TGTGAGCACCAATCTATAACTTGA 57.951 37.500 0.00 0.00 0.00 3.02
212 213 6.371548 TGTGAGCACCAATCTATAACTTGAAC 59.628 38.462 0.00 0.00 0.00 3.18
214 215 5.193679 AGCACCAATCTATAACTTGAACCC 58.806 41.667 0.00 0.00 0.00 4.11
216 217 5.066505 GCACCAATCTATAACTTGAACCCTG 59.933 44.000 0.00 0.00 0.00 4.45
217 218 5.590259 CACCAATCTATAACTTGAACCCTGG 59.410 44.000 0.00 0.00 0.00 4.45
250 251 4.551215 ACCACTCTCCTCCTAATCATCT 57.449 45.455 0.00 0.00 0.00 2.90
253 254 6.629156 ACCACTCTCCTCCTAATCATCTAAT 58.371 40.000 0.00 0.00 0.00 1.73
267 268 5.468540 TCATCTAATCATAGGTTGGTCCG 57.531 43.478 0.00 0.00 41.99 4.79
268 269 3.746045 TCTAATCATAGGTTGGTCCGC 57.254 47.619 0.00 0.00 41.99 5.54
284 285 6.591750 TGGTCCGCCAAAAAGATTTATTTA 57.408 33.333 0.00 0.00 42.83 1.40
285 286 6.994221 TGGTCCGCCAAAAAGATTTATTTAA 58.006 32.000 0.00 0.00 42.83 1.52
394 398 0.036010 AAGAGAACTCACATGGGCCG 60.036 55.000 0.00 0.00 0.00 6.13
410 414 2.267961 CGGCCCAGGTAGTTGGTC 59.732 66.667 0.00 0.00 36.45 4.02
416 420 2.389715 CCCAGGTAGTTGGTCTCTAGG 58.610 57.143 0.00 0.00 36.45 3.02
417 421 1.757699 CCAGGTAGTTGGTCTCTAGGC 59.242 57.143 0.00 0.00 33.38 3.93
418 422 1.405821 CAGGTAGTTGGTCTCTAGGCG 59.594 57.143 0.00 0.00 0.00 5.52
419 423 1.005687 AGGTAGTTGGTCTCTAGGCGT 59.994 52.381 0.00 0.00 0.00 5.68
420 424 1.404748 GGTAGTTGGTCTCTAGGCGTC 59.595 57.143 0.00 0.00 0.00 5.19
421 425 2.089980 GTAGTTGGTCTCTAGGCGTCA 58.910 52.381 0.00 0.00 0.00 4.35
471 481 2.246126 AAACCCTCCCCCACCATCC 61.246 63.158 0.00 0.00 0.00 3.51
472 482 4.779486 ACCCTCCCCCACCATCCC 62.779 72.222 0.00 0.00 0.00 3.85
512 524 4.444838 CAACCCGATCGCCGTCCA 62.445 66.667 10.32 0.00 36.31 4.02
534 546 3.892740 TTGGACGGATGTGGTGGCG 62.893 63.158 0.00 0.00 0.00 5.69
547 559 1.435515 GTGGCGAGCTACTCCTCAG 59.564 63.158 4.29 0.00 0.00 3.35
548 560 1.754621 TGGCGAGCTACTCCTCAGG 60.755 63.158 0.00 0.00 0.00 3.86
549 561 2.494530 GGCGAGCTACTCCTCAGGG 61.495 68.421 0.00 0.00 0.00 4.45
550 562 3.124686 CGAGCTACTCCTCAGGGC 58.875 66.667 0.00 0.00 0.00 5.19
551 563 1.754621 CGAGCTACTCCTCAGGGCA 60.755 63.158 0.00 0.00 0.00 5.36
552 564 1.112315 CGAGCTACTCCTCAGGGCAT 61.112 60.000 0.00 0.00 0.00 4.40
553 565 0.392336 GAGCTACTCCTCAGGGCATG 59.608 60.000 0.00 0.00 0.00 4.06
554 566 0.326048 AGCTACTCCTCAGGGCATGT 60.326 55.000 0.00 0.00 0.00 3.21
555 567 1.062886 AGCTACTCCTCAGGGCATGTA 60.063 52.381 0.00 0.00 0.00 2.29
556 568 1.069358 GCTACTCCTCAGGGCATGTAC 59.931 57.143 0.00 0.00 0.00 2.90
557 569 2.388735 CTACTCCTCAGGGCATGTACA 58.611 52.381 0.00 0.00 0.00 2.90
558 570 1.656587 ACTCCTCAGGGCATGTACAA 58.343 50.000 0.00 0.00 0.00 2.41
559 571 2.200081 ACTCCTCAGGGCATGTACAAT 58.800 47.619 0.00 0.00 0.00 2.71
560 572 2.092753 ACTCCTCAGGGCATGTACAATG 60.093 50.000 0.00 0.12 0.00 2.82
561 573 1.027357 CCTCAGGGCATGTACAATGC 58.973 55.000 17.01 17.01 43.85 3.56
562 574 1.682702 CCTCAGGGCATGTACAATGCA 60.683 52.381 22.92 0.00 46.21 3.96
563 575 2.304092 CTCAGGGCATGTACAATGCAT 58.696 47.619 22.92 13.25 46.21 3.96
564 576 3.479489 CTCAGGGCATGTACAATGCATA 58.521 45.455 22.92 10.36 46.21 3.14
565 577 3.479489 TCAGGGCATGTACAATGCATAG 58.521 45.455 22.92 15.02 46.21 2.23
566 578 2.030540 CAGGGCATGTACAATGCATAGC 60.031 50.000 22.92 11.42 46.21 2.97
567 579 1.270550 GGGCATGTACAATGCATAGCC 59.729 52.381 22.92 16.30 46.21 3.93
568 580 2.233271 GGCATGTACAATGCATAGCCT 58.767 47.619 22.92 0.00 46.21 4.58
569 581 2.624838 GGCATGTACAATGCATAGCCTT 59.375 45.455 22.92 0.00 46.21 4.35
570 582 3.820467 GGCATGTACAATGCATAGCCTTA 59.180 43.478 22.92 0.00 46.21 2.69
571 583 4.278170 GGCATGTACAATGCATAGCCTTAA 59.722 41.667 22.92 0.00 46.21 1.85
572 584 5.455392 GCATGTACAATGCATAGCCTTAAG 58.545 41.667 19.12 0.00 44.00 1.85
573 585 5.563475 GCATGTACAATGCATAGCCTTAAGG 60.563 44.000 17.81 17.81 44.00 2.69
574 586 5.110814 TGTACAATGCATAGCCTTAAGGT 57.889 39.130 22.55 11.85 37.57 3.50
575 587 4.881273 TGTACAATGCATAGCCTTAAGGTG 59.119 41.667 22.55 13.99 37.57 4.00
576 588 4.235079 ACAATGCATAGCCTTAAGGTGA 57.765 40.909 22.55 11.29 37.57 4.02
577 589 4.796606 ACAATGCATAGCCTTAAGGTGAT 58.203 39.130 22.55 13.04 37.57 3.06
578 590 4.581824 ACAATGCATAGCCTTAAGGTGATG 59.418 41.667 22.55 23.06 37.57 3.07
579 591 2.575532 TGCATAGCCTTAAGGTGATGC 58.424 47.619 33.82 33.82 46.45 3.91
580 592 1.882623 GCATAGCCTTAAGGTGATGCC 59.117 52.381 32.20 22.01 43.49 4.40
594 606 4.075854 TGCCTCGCATGCCACGTA 62.076 61.111 13.15 0.00 31.71 3.57
595 607 3.264897 GCCTCGCATGCCACGTAG 61.265 66.667 13.15 2.04 0.00 3.51
596 608 2.586079 CCTCGCATGCCACGTAGG 60.586 66.667 13.15 7.64 41.84 3.18
597 609 2.184322 CTCGCATGCCACGTAGGT 59.816 61.111 13.15 0.00 40.61 3.08
598 610 1.447838 CTCGCATGCCACGTAGGTT 60.448 57.895 13.15 0.00 40.61 3.50
599 611 1.421410 CTCGCATGCCACGTAGGTTC 61.421 60.000 13.15 0.00 40.61 3.62
600 612 2.798501 CGCATGCCACGTAGGTTCG 61.799 63.158 13.15 0.00 40.61 3.95
601 613 2.461110 GCATGCCACGTAGGTTCGG 61.461 63.158 6.36 0.00 40.61 4.30
602 614 1.216977 CATGCCACGTAGGTTCGGA 59.783 57.895 0.00 0.00 40.61 4.55
603 615 0.179084 CATGCCACGTAGGTTCGGAT 60.179 55.000 0.00 0.00 40.61 4.18
604 616 1.067974 CATGCCACGTAGGTTCGGATA 59.932 52.381 0.00 0.00 40.61 2.59
605 617 1.405872 TGCCACGTAGGTTCGGATAT 58.594 50.000 0.00 0.00 40.61 1.63
606 618 1.067974 TGCCACGTAGGTTCGGATATG 59.932 52.381 0.00 0.00 40.61 1.78
607 619 1.338973 GCCACGTAGGTTCGGATATGA 59.661 52.381 0.00 0.00 40.61 2.15
608 620 2.861360 GCCACGTAGGTTCGGATATGAC 60.861 54.545 0.00 0.00 40.61 3.06
609 621 2.603892 CCACGTAGGTTCGGATATGACG 60.604 54.545 0.00 0.00 34.94 4.35
610 622 2.032550 CACGTAGGTTCGGATATGACGT 59.967 50.000 0.00 0.00 42.27 4.34
611 623 3.248363 CACGTAGGTTCGGATATGACGTA 59.752 47.826 7.89 0.00 39.80 3.57
612 624 3.876914 ACGTAGGTTCGGATATGACGTAA 59.123 43.478 6.81 0.00 39.99 3.18
613 625 4.335315 ACGTAGGTTCGGATATGACGTAAA 59.665 41.667 6.81 0.00 39.99 2.01
614 626 4.908156 CGTAGGTTCGGATATGACGTAAAG 59.092 45.833 0.00 0.00 0.00 1.85
615 627 4.996788 AGGTTCGGATATGACGTAAAGT 57.003 40.909 0.00 0.00 0.00 2.66
616 628 6.292865 CGTAGGTTCGGATATGACGTAAAGTA 60.293 42.308 0.00 0.00 0.00 2.24
617 629 6.069684 AGGTTCGGATATGACGTAAAGTAG 57.930 41.667 0.00 0.00 0.00 2.57
618 630 5.009410 AGGTTCGGATATGACGTAAAGTAGG 59.991 44.000 0.00 0.00 0.00 3.18
619 631 5.221126 GGTTCGGATATGACGTAAAGTAGGT 60.221 44.000 0.00 0.00 0.00 3.08
620 632 6.268566 GTTCGGATATGACGTAAAGTAGGTT 58.731 40.000 0.00 0.00 0.00 3.50
621 633 6.064846 TCGGATATGACGTAAAGTAGGTTC 57.935 41.667 0.00 0.00 0.00 3.62
622 634 4.908156 CGGATATGACGTAAAGTAGGTTCG 59.092 45.833 0.00 0.00 0.00 3.95
623 635 5.218139 GGATATGACGTAAAGTAGGTTCGG 58.782 45.833 0.00 0.00 0.00 4.30
624 636 5.009010 GGATATGACGTAAAGTAGGTTCGGA 59.991 44.000 0.00 0.00 0.00 4.55
625 637 4.996788 ATGACGTAAAGTAGGTTCGGAT 57.003 40.909 0.00 0.00 0.00 4.18
626 638 7.094634 GGATATGACGTAAAGTAGGTTCGGATA 60.095 40.741 0.00 0.00 0.00 2.59
627 639 5.490139 TGACGTAAAGTAGGTTCGGATAG 57.510 43.478 0.00 0.00 0.00 2.08
628 640 4.336433 TGACGTAAAGTAGGTTCGGATAGG 59.664 45.833 0.00 0.00 0.00 2.57
629 641 3.633986 ACGTAAAGTAGGTTCGGATAGGG 59.366 47.826 0.00 0.00 0.00 3.53
630 642 3.885297 CGTAAAGTAGGTTCGGATAGGGA 59.115 47.826 0.00 0.00 0.00 4.20
631 643 4.339247 CGTAAAGTAGGTTCGGATAGGGAA 59.661 45.833 0.00 0.00 0.00 3.97
632 644 5.163519 CGTAAAGTAGGTTCGGATAGGGAAA 60.164 44.000 0.00 0.00 0.00 3.13
633 645 4.750021 AAGTAGGTTCGGATAGGGAAAC 57.250 45.455 0.00 0.00 0.00 2.78
634 646 2.692041 AGTAGGTTCGGATAGGGAAACG 59.308 50.000 0.00 0.00 36.24 3.60
635 647 0.828677 AGGTTCGGATAGGGAAACGG 59.171 55.000 0.00 0.00 36.24 4.44
636 648 0.179065 GGTTCGGATAGGGAAACGGG 60.179 60.000 0.00 0.00 0.00 5.28
637 649 0.826062 GTTCGGATAGGGAAACGGGA 59.174 55.000 0.00 0.00 0.00 5.14
638 650 1.415289 GTTCGGATAGGGAAACGGGAT 59.585 52.381 0.00 0.00 0.00 3.85
639 651 1.335145 TCGGATAGGGAAACGGGATC 58.665 55.000 0.00 0.00 0.00 3.36
640 652 0.320697 CGGATAGGGAAACGGGATCC 59.679 60.000 1.92 1.92 36.16 3.36
641 653 1.730851 GGATAGGGAAACGGGATCCT 58.269 55.000 12.58 0.00 37.14 3.24
642 654 1.624312 GGATAGGGAAACGGGATCCTC 59.376 57.143 12.58 0.35 37.14 3.71
643 655 2.610873 GATAGGGAAACGGGATCCTCT 58.389 52.381 12.58 0.00 37.14 3.69
644 656 2.083628 TAGGGAAACGGGATCCTCTC 57.916 55.000 12.58 0.44 37.14 3.20
645 657 0.691413 AGGGAAACGGGATCCTCTCC 60.691 60.000 12.58 11.82 44.11 3.71
646 658 0.981277 GGGAAACGGGATCCTCTCCA 60.981 60.000 12.58 0.00 46.98 3.86
647 659 0.466124 GGAAACGGGATCCTCTCCAG 59.534 60.000 12.58 0.00 46.98 3.86
648 660 0.466124 GAAACGGGATCCTCTCCAGG 59.534 60.000 12.58 0.00 46.98 4.45
657 669 3.307445 CTCTCCAGGAGGCAGGTG 58.693 66.667 17.10 0.00 38.35 4.00
658 670 3.005539 TCTCCAGGAGGCAGGTGC 61.006 66.667 17.10 0.00 41.14 5.01
659 671 3.007920 CTCCAGGAGGCAGGTGCT 61.008 66.667 8.88 0.00 41.70 4.40
660 672 2.530151 TCCAGGAGGCAGGTGCTT 60.530 61.111 1.26 0.00 41.70 3.91
661 673 2.360852 CCAGGAGGCAGGTGCTTG 60.361 66.667 1.26 0.00 41.70 4.01
662 674 2.752358 CAGGAGGCAGGTGCTTGA 59.248 61.111 1.26 0.00 41.70 3.02
663 675 1.073722 CAGGAGGCAGGTGCTTGAA 59.926 57.895 1.26 0.00 41.70 2.69
664 676 1.073897 AGGAGGCAGGTGCTTGAAC 59.926 57.895 1.26 0.00 41.70 3.18
665 677 1.228245 GGAGGCAGGTGCTTGAACA 60.228 57.895 1.26 0.00 41.70 3.18
666 678 1.239968 GGAGGCAGGTGCTTGAACAG 61.240 60.000 1.26 0.00 41.70 3.16
667 679 0.250467 GAGGCAGGTGCTTGAACAGA 60.250 55.000 1.26 0.00 41.70 3.41
668 680 0.183492 AGGCAGGTGCTTGAACAGAA 59.817 50.000 1.26 0.00 41.70 3.02
669 681 1.032014 GGCAGGTGCTTGAACAGAAA 58.968 50.000 1.26 0.00 41.70 2.52
670 682 1.408702 GGCAGGTGCTTGAACAGAAAA 59.591 47.619 1.26 0.00 41.70 2.29
671 683 2.159114 GGCAGGTGCTTGAACAGAAAAA 60.159 45.455 1.26 0.00 41.70 1.94
672 684 3.118542 GCAGGTGCTTGAACAGAAAAAG 58.881 45.455 0.00 0.00 38.21 2.27
673 685 3.429410 GCAGGTGCTTGAACAGAAAAAGT 60.429 43.478 0.00 0.00 38.21 2.66
674 686 4.107622 CAGGTGCTTGAACAGAAAAAGTG 58.892 43.478 0.00 0.00 0.00 3.16
675 687 3.763897 AGGTGCTTGAACAGAAAAAGTGT 59.236 39.130 0.00 0.00 0.00 3.55
676 688 3.859386 GGTGCTTGAACAGAAAAAGTGTG 59.141 43.478 0.00 0.00 0.00 3.82
677 689 3.859386 GTGCTTGAACAGAAAAAGTGTGG 59.141 43.478 0.00 0.00 0.00 4.17
678 690 3.509575 TGCTTGAACAGAAAAAGTGTGGT 59.490 39.130 0.00 0.00 0.00 4.16
679 691 4.105486 GCTTGAACAGAAAAAGTGTGGTC 58.895 43.478 0.00 0.00 37.74 4.02
680 692 4.672409 CTTGAACAGAAAAAGTGTGGTCC 58.328 43.478 0.00 0.00 36.36 4.46
681 693 2.680841 TGAACAGAAAAAGTGTGGTCCG 59.319 45.455 0.00 0.00 36.36 4.79
682 694 2.702592 ACAGAAAAAGTGTGGTCCGA 57.297 45.000 0.00 0.00 0.00 4.55
683 695 2.993937 ACAGAAAAAGTGTGGTCCGAA 58.006 42.857 0.00 0.00 0.00 4.30
684 696 2.943033 ACAGAAAAAGTGTGGTCCGAAG 59.057 45.455 0.00 0.00 0.00 3.79
685 697 3.202906 CAGAAAAAGTGTGGTCCGAAGA 58.797 45.455 0.00 0.00 0.00 2.87
686 698 3.002348 CAGAAAAAGTGTGGTCCGAAGAC 59.998 47.826 0.00 0.00 42.73 3.01
687 699 2.702592 AAAAGTGTGGTCCGAAGACA 57.297 45.000 0.00 0.00 45.48 3.41
688 700 2.702592 AAAGTGTGGTCCGAAGACAA 57.297 45.000 0.00 0.00 45.48 3.18
689 701 2.702592 AAGTGTGGTCCGAAGACAAA 57.297 45.000 0.00 0.00 45.48 2.83
690 702 2.702592 AGTGTGGTCCGAAGACAAAA 57.297 45.000 0.00 0.00 45.48 2.44
691 703 2.993937 AGTGTGGTCCGAAGACAAAAA 58.006 42.857 0.00 0.00 45.48 1.94
692 704 2.681344 AGTGTGGTCCGAAGACAAAAAC 59.319 45.455 0.00 0.00 45.48 2.43
693 705 2.681344 GTGTGGTCCGAAGACAAAAACT 59.319 45.455 0.00 0.00 45.48 2.66
694 706 2.680841 TGTGGTCCGAAGACAAAAACTG 59.319 45.455 0.00 0.00 45.48 3.16
695 707 2.940410 GTGGTCCGAAGACAAAAACTGA 59.060 45.455 0.00 0.00 45.48 3.41
696 708 3.375922 GTGGTCCGAAGACAAAAACTGAA 59.624 43.478 0.00 0.00 45.48 3.02
697 709 4.011023 TGGTCCGAAGACAAAAACTGAAA 58.989 39.130 0.00 0.00 45.48 2.69
698 710 4.459685 TGGTCCGAAGACAAAAACTGAAAA 59.540 37.500 0.00 0.00 45.48 2.29
699 711 5.034797 GGTCCGAAGACAAAAACTGAAAAG 58.965 41.667 0.00 0.00 45.48 2.27
700 712 5.034797 GTCCGAAGACAAAAACTGAAAAGG 58.965 41.667 0.00 0.00 42.99 3.11
701 713 4.703093 TCCGAAGACAAAAACTGAAAAGGT 59.297 37.500 0.00 0.00 0.00 3.50
702 714 5.184287 TCCGAAGACAAAAACTGAAAAGGTT 59.816 36.000 0.00 0.00 0.00 3.50
703 715 5.288472 CCGAAGACAAAAACTGAAAAGGTTG 59.712 40.000 0.00 0.00 0.00 3.77
704 716 6.090129 CGAAGACAAAAACTGAAAAGGTTGA 58.910 36.000 0.00 0.00 0.00 3.18
705 717 6.584563 CGAAGACAAAAACTGAAAAGGTTGAA 59.415 34.615 0.00 0.00 0.00 2.69
706 718 7.201350 CGAAGACAAAAACTGAAAAGGTTGAAG 60.201 37.037 0.00 0.00 0.00 3.02
707 719 6.993079 AGACAAAAACTGAAAAGGTTGAAGT 58.007 32.000 0.00 0.00 0.00 3.01
708 720 6.868339 AGACAAAAACTGAAAAGGTTGAAGTG 59.132 34.615 0.00 0.00 0.00 3.16
709 721 6.754193 ACAAAAACTGAAAAGGTTGAAGTGA 58.246 32.000 0.00 0.00 0.00 3.41
710 722 7.213678 ACAAAAACTGAAAAGGTTGAAGTGAA 58.786 30.769 0.00 0.00 0.00 3.18
711 723 7.713073 ACAAAAACTGAAAAGGTTGAAGTGAAA 59.287 29.630 0.00 0.00 0.00 2.69
712 724 8.555361 CAAAAACTGAAAAGGTTGAAGTGAAAA 58.445 29.630 0.00 0.00 0.00 2.29
713 725 8.669946 AAAACTGAAAAGGTTGAAGTGAAAAA 57.330 26.923 0.00 0.00 0.00 1.94
714 726 8.846943 AAACTGAAAAGGTTGAAGTGAAAAAT 57.153 26.923 0.00 0.00 0.00 1.82
715 727 9.936759 AAACTGAAAAGGTTGAAGTGAAAAATA 57.063 25.926 0.00 0.00 0.00 1.40
716 728 9.586435 AACTGAAAAGGTTGAAGTGAAAAATAG 57.414 29.630 0.00 0.00 0.00 1.73
717 729 8.966868 ACTGAAAAGGTTGAAGTGAAAAATAGA 58.033 29.630 0.00 0.00 0.00 1.98
718 730 9.455847 CTGAAAAGGTTGAAGTGAAAAATAGAG 57.544 33.333 0.00 0.00 0.00 2.43
719 731 9.184523 TGAAAAGGTTGAAGTGAAAAATAGAGA 57.815 29.630 0.00 0.00 0.00 3.10
721 733 9.971922 AAAAGGTTGAAGTGAAAAATAGAGATG 57.028 29.630 0.00 0.00 0.00 2.90
722 734 7.150783 AGGTTGAAGTGAAAAATAGAGATGC 57.849 36.000 0.00 0.00 0.00 3.91
723 735 6.716628 AGGTTGAAGTGAAAAATAGAGATGCA 59.283 34.615 0.00 0.00 0.00 3.96
724 736 7.395489 AGGTTGAAGTGAAAAATAGAGATGCAT 59.605 33.333 0.00 0.00 0.00 3.96
725 737 7.487189 GGTTGAAGTGAAAAATAGAGATGCATG 59.513 37.037 2.46 0.00 0.00 4.06
726 738 7.692460 TGAAGTGAAAAATAGAGATGCATGT 57.308 32.000 2.46 0.00 0.00 3.21
727 739 7.532571 TGAAGTGAAAAATAGAGATGCATGTG 58.467 34.615 2.46 0.00 0.00 3.21
728 740 7.175467 TGAAGTGAAAAATAGAGATGCATGTGT 59.825 33.333 2.46 0.00 0.00 3.72
729 741 8.565896 AAGTGAAAAATAGAGATGCATGTGTA 57.434 30.769 2.46 2.80 0.00 2.90
730 742 7.978982 AGTGAAAAATAGAGATGCATGTGTAC 58.021 34.615 2.46 0.00 0.00 2.90
731 743 7.826252 AGTGAAAAATAGAGATGCATGTGTACT 59.174 33.333 2.46 0.00 0.00 2.73
732 744 9.098355 GTGAAAAATAGAGATGCATGTGTACTA 57.902 33.333 2.46 0.00 0.00 1.82
733 745 9.665719 TGAAAAATAGAGATGCATGTGTACTAA 57.334 29.630 2.46 0.00 0.00 2.24
736 748 9.672673 AAAATAGAGATGCATGTGTACTAAAGT 57.327 29.630 2.46 0.00 0.00 2.66
737 749 8.879342 AATAGAGATGCATGTGTACTAAAGTC 57.121 34.615 2.46 0.00 0.00 3.01
738 750 6.537453 AGAGATGCATGTGTACTAAAGTCT 57.463 37.500 2.46 0.00 0.00 3.24
739 751 6.940739 AGAGATGCATGTGTACTAAAGTCTT 58.059 36.000 2.46 0.00 0.00 3.01
740 752 7.390027 AGAGATGCATGTGTACTAAAGTCTTT 58.610 34.615 2.46 2.81 0.00 2.52
741 753 8.531982 AGAGATGCATGTGTACTAAAGTCTTTA 58.468 33.333 2.46 4.97 0.00 1.85
742 754 9.319143 GAGATGCATGTGTACTAAAGTCTTTAT 57.681 33.333 2.46 0.30 0.00 1.40
743 755 9.672673 AGATGCATGTGTACTAAAGTCTTTATT 57.327 29.630 2.46 3.27 0.00 1.40
775 787 8.463930 TTTTTAATGAGGCCCACTAATGATAG 57.536 34.615 0.00 0.00 35.14 2.08
776 788 3.710209 ATGAGGCCCACTAATGATAGC 57.290 47.619 0.00 0.00 31.96 2.97
777 789 2.694397 TGAGGCCCACTAATGATAGCT 58.306 47.619 0.00 0.00 31.96 3.32
778 790 3.048600 TGAGGCCCACTAATGATAGCTT 58.951 45.455 0.00 0.00 31.96 3.74
779 791 3.181451 TGAGGCCCACTAATGATAGCTTG 60.181 47.826 0.00 0.00 31.96 4.01
780 792 1.882623 GGCCCACTAATGATAGCTTGC 59.117 52.381 0.00 0.00 31.96 4.01
781 793 2.575532 GCCCACTAATGATAGCTTGCA 58.424 47.619 0.00 0.00 31.96 4.08
782 794 3.152341 GCCCACTAATGATAGCTTGCAT 58.848 45.455 0.00 0.00 31.96 3.96
783 795 3.571401 GCCCACTAATGATAGCTTGCATT 59.429 43.478 15.30 15.30 38.24 3.56
784 796 4.558095 GCCCACTAATGATAGCTTGCATTG 60.558 45.833 18.58 12.80 36.27 2.82
785 797 4.022589 CCCACTAATGATAGCTTGCATTGG 60.023 45.833 18.58 17.90 38.47 3.16
786 798 4.823442 CCACTAATGATAGCTTGCATTGGA 59.177 41.667 22.46 7.26 36.73 3.53
787 799 5.300034 CCACTAATGATAGCTTGCATTGGAA 59.700 40.000 22.46 6.74 36.73 3.53
788 800 6.183360 CCACTAATGATAGCTTGCATTGGAAA 60.183 38.462 22.46 6.48 36.73 3.13
789 801 6.916387 CACTAATGATAGCTTGCATTGGAAAG 59.084 38.462 22.46 14.62 36.73 2.62
790 802 6.830324 ACTAATGATAGCTTGCATTGGAAAGA 59.170 34.615 22.46 5.69 36.73 2.52
791 803 6.534475 AATGATAGCTTGCATTGGAAAGAA 57.466 33.333 11.54 0.00 33.74 2.52
792 804 5.981088 TGATAGCTTGCATTGGAAAGAAA 57.019 34.783 0.00 0.00 30.42 2.52
793 805 6.343716 TGATAGCTTGCATTGGAAAGAAAA 57.656 33.333 0.00 0.00 30.42 2.29
794 806 6.757237 TGATAGCTTGCATTGGAAAGAAAAA 58.243 32.000 0.00 0.00 30.42 1.94
826 838 9.997482 TGTAAGTGTCTCAAATTACTTTTTGTC 57.003 29.630 0.00 0.00 37.73 3.18
827 839 9.997482 GTAAGTGTCTCAAATTACTTTTTGTCA 57.003 29.630 0.00 0.00 37.73 3.58
831 843 9.612620 GTGTCTCAAATTACTTTTTGTCATAGG 57.387 33.333 0.00 0.00 37.73 2.57
832 844 8.792633 TGTCTCAAATTACTTTTTGTCATAGGG 58.207 33.333 0.00 0.00 37.73 3.53
833 845 7.755373 GTCTCAAATTACTTTTTGTCATAGGGC 59.245 37.037 0.00 0.00 37.73 5.19
834 846 7.450014 TCTCAAATTACTTTTTGTCATAGGGCA 59.550 33.333 0.00 0.00 37.73 5.36
835 847 8.133024 TCAAATTACTTTTTGTCATAGGGCAT 57.867 30.769 0.00 0.00 37.73 4.40
836 848 9.249053 TCAAATTACTTTTTGTCATAGGGCATA 57.751 29.630 0.00 0.00 37.73 3.14
839 851 8.766994 ATTACTTTTTGTCATAGGGCATATGT 57.233 30.769 17.67 0.15 41.82 2.29
840 852 9.860650 ATTACTTTTTGTCATAGGGCATATGTA 57.139 29.630 17.67 6.87 41.82 2.29
841 853 9.860650 TTACTTTTTGTCATAGGGCATATGTAT 57.139 29.630 17.67 0.00 41.82 2.29
842 854 8.396272 ACTTTTTGTCATAGGGCATATGTATC 57.604 34.615 17.67 10.64 41.82 2.24
843 855 7.448469 ACTTTTTGTCATAGGGCATATGTATCC 59.552 37.037 17.67 4.37 41.82 2.59
844 856 6.446909 TTTGTCATAGGGCATATGTATCCA 57.553 37.500 17.67 8.68 41.82 3.41
845 857 6.641161 TTGTCATAGGGCATATGTATCCAT 57.359 37.500 17.67 0.00 41.82 3.41
846 858 7.747809 TTGTCATAGGGCATATGTATCCATA 57.252 36.000 17.67 0.00 41.82 2.74
847 859 7.936026 TGTCATAGGGCATATGTATCCATAT 57.064 36.000 17.67 2.20 43.54 1.78
861 873 6.394809 TGTATCCATATGCCACTATTGTACG 58.605 40.000 0.00 0.00 0.00 3.67
862 874 4.948341 TCCATATGCCACTATTGTACGT 57.052 40.909 0.00 0.00 0.00 3.57
863 875 4.627058 TCCATATGCCACTATTGTACGTG 58.373 43.478 0.00 0.00 0.00 4.49
864 876 3.186409 CCATATGCCACTATTGTACGTGC 59.814 47.826 0.00 0.00 0.00 5.34
865 877 1.663695 ATGCCACTATTGTACGTGCC 58.336 50.000 0.00 0.00 0.00 5.01
866 878 0.391927 TGCCACTATTGTACGTGCCC 60.392 55.000 0.00 0.00 0.00 5.36
867 879 0.107848 GCCACTATTGTACGTGCCCT 60.108 55.000 0.00 0.00 0.00 5.19
868 880 1.935933 CCACTATTGTACGTGCCCTC 58.064 55.000 0.00 0.00 0.00 4.30
869 881 1.472728 CCACTATTGTACGTGCCCTCC 60.473 57.143 0.00 0.00 0.00 4.30
870 882 1.480954 CACTATTGTACGTGCCCTCCT 59.519 52.381 0.00 0.00 0.00 3.69
871 883 2.691526 CACTATTGTACGTGCCCTCCTA 59.308 50.000 0.00 0.00 0.00 2.94
872 884 2.692041 ACTATTGTACGTGCCCTCCTAC 59.308 50.000 0.00 0.00 0.00 3.18
873 885 0.458669 ATTGTACGTGCCCTCCTACG 59.541 55.000 0.00 0.00 45.19 3.51
904 916 3.243569 CGGAGATTTCTCGGCTTAGTGAT 60.244 47.826 1.67 0.00 43.76 3.06
916 928 3.696518 TAGTGATCCCGGGGCAGCT 62.697 63.158 23.50 18.92 0.00 4.24
935 947 3.792053 GACTCGCGTGGCTATGGGG 62.792 68.421 13.32 0.63 0.00 4.96
938 950 4.483243 CGCGTGGCTATGGGGGTT 62.483 66.667 0.00 0.00 0.00 4.11
1233 1245 1.112113 TCGAGATTACCACTGGGAGC 58.888 55.000 0.00 0.00 38.05 4.70
1290 1302 1.627550 GGCGCAAGTTCGAGGACTTC 61.628 60.000 10.83 0.00 37.76 3.01
1315 1327 1.679139 CAACCTGCTCTTGTTCCACA 58.321 50.000 0.00 0.00 0.00 4.17
1361 1373 2.370281 CGGCTATATGCTGGTACTGG 57.630 55.000 0.00 0.00 44.06 4.00
1383 1395 2.980233 GCCTGTGCACTTCGCCTT 60.980 61.111 19.41 0.00 41.33 4.35
1386 1398 2.664851 TGTGCACTTCGCCTTCGG 60.665 61.111 19.41 0.00 41.33 4.30
1437 1449 0.182775 AATACCGCCCCCAAGTGATC 59.817 55.000 0.00 0.00 0.00 2.92
1488 1500 3.114606 TCAGTTTCCTCATATGGGAGCA 58.885 45.455 3.44 0.00 34.06 4.26
1496 1508 3.881688 CCTCATATGGGAGCAAGTTCTTG 59.118 47.826 3.44 8.04 33.47 3.02
1503 1515 3.042560 GCAAGTTCTTGCCGCCTT 58.957 55.556 22.22 0.00 41.85 4.35
1534 1546 7.420800 GTTGCATCTTAATGGTTTCTATCTGG 58.579 38.462 0.00 0.00 33.19 3.86
1548 1560 2.198827 ATCTGGACAACCAATTCGCA 57.801 45.000 0.00 0.00 46.32 5.10
1554 1566 2.346803 GACAACCAATTCGCAGAGCTA 58.653 47.619 0.00 0.00 38.43 3.32
1608 1620 4.928398 CTCAGGAGCTGCGACAAT 57.072 55.556 0.00 0.00 0.00 2.71
1630 1642 9.883142 ACAATGGTTTTCAAGAAATTAAGTCAA 57.117 25.926 0.00 0.00 0.00 3.18
1650 1662 4.692625 TCAAGCACATTGAAGAAGCTAGTC 59.307 41.667 0.00 0.00 45.00 2.59
1663 1675 0.097325 GCTAGTCGTCGACTCCTGTG 59.903 60.000 30.11 16.63 42.40 3.66
1667 1679 2.197605 TCGTCGACTCCTGTGGCAA 61.198 57.895 14.70 0.00 0.00 4.52
1703 1715 2.224877 TGGTTATCGTGGCACCCCA 61.225 57.895 12.86 7.70 39.32 4.96
1710 1722 2.916703 GTGGCACCCCATGTTGCA 60.917 61.111 6.29 0.00 44.51 4.08
1753 1765 2.036958 TGGATGCTATTCCAACGGTG 57.963 50.000 0.00 0.00 42.82 4.94
1758 1770 2.852449 TGCTATTCCAACGGTGTTTCA 58.148 42.857 0.00 0.00 0.00 2.69
1770 1782 6.410845 CAACGGTGTTTCAATATATGAGACG 58.589 40.000 0.00 0.00 44.13 4.18
1791 1803 2.159599 GGCTTCTCTTGTCAAAGCATCG 60.160 50.000 8.78 0.00 45.63 3.84
1816 1828 4.935702 TCATTTGCTTTGTCTTGGTGAAG 58.064 39.130 0.00 0.00 0.00 3.02
1869 1881 0.958091 GTAACCTGTGCAATGTGCCA 59.042 50.000 0.00 0.00 44.23 4.92
1876 1888 1.073177 GTGCAATGTGCCAAATCTGC 58.927 50.000 0.00 0.00 44.23 4.26
1891 1903 0.178068 TCTGCAGCTATCGGGTTTCC 59.822 55.000 9.47 0.00 0.00 3.13
1919 1931 2.505407 TGGTATGCCTTGCTAGACATGT 59.495 45.455 7.19 0.00 35.27 3.21
1979 1991 6.575244 TCCCATGTGTTCCTAACAGATTAT 57.425 37.500 0.12 0.00 42.04 1.28
1996 2008 6.484540 CAGATTATCTGTTCATCTTGCACAC 58.515 40.000 13.65 0.00 39.58 3.82
2032 2044 7.747155 TGAATTGACCGTTAAATAAGGTTCA 57.253 32.000 0.00 0.00 38.57 3.18
2124 2136 8.509690 CAATACTATGCATCAGTAAAAGGATGG 58.490 37.037 0.19 0.00 40.91 3.51
2128 2140 5.378230 TGCATCAGTAAAAGGATGGATCT 57.622 39.130 0.00 0.00 40.91 2.75
2131 2143 6.095860 TGCATCAGTAAAAGGATGGATCTTTG 59.904 38.462 0.00 0.00 40.91 2.77
2145 2181 8.574737 GGATGGATCTTTGAGGAATATTTTGAG 58.425 37.037 0.00 0.00 0.00 3.02
2212 2248 1.533965 CGATGCTCGTTGAGGAATCGA 60.534 52.381 11.57 0.00 35.25 3.59
2230 2266 8.579682 GGAATCGATTAAATTCCCAATCTTTG 57.420 34.615 11.38 0.00 44.28 2.77
2284 2320 6.142139 TGTTTGCTTGATAAATGTGAACTCG 58.858 36.000 0.00 0.00 0.00 4.18
2286 2322 6.741992 TTGCTTGATAAATGTGAACTCGAT 57.258 33.333 0.00 0.00 0.00 3.59
2299 2335 0.456221 ACTCGATACCAAGCTGGACG 59.544 55.000 8.91 10.34 40.96 4.79
2300 2336 0.872021 CTCGATACCAAGCTGGACGC 60.872 60.000 8.91 0.00 40.96 5.19
2319 2355 2.160417 CGCTTTAGGGAGCTTTGTTCAG 59.840 50.000 0.00 0.00 40.52 3.02
2325 2361 2.165998 GGGAGCTTTGTTCAGAATGCT 58.834 47.619 0.00 0.00 38.63 3.79
2388 2424 6.553953 ATTAACCTTTTTGTGTTTCCTGGT 57.446 33.333 0.00 0.00 0.00 4.00
2391 2427 4.862371 ACCTTTTTGTGTTTCCTGGTCTA 58.138 39.130 0.00 0.00 0.00 2.59
2395 2431 6.072452 CCTTTTTGTGTTTCCTGGTCTATCTC 60.072 42.308 0.00 0.00 0.00 2.75
2399 2435 4.532126 TGTGTTTCCTGGTCTATCTCATGT 59.468 41.667 0.00 0.00 0.00 3.21
2456 2492 6.347725 CCTGTCAAAAGTTTCCAGTAGAATCG 60.348 42.308 8.31 0.00 33.44 3.34
2458 2494 5.699458 GTCAAAAGTTTCCAGTAGAATCGGA 59.301 40.000 0.00 0.00 33.44 4.55
2480 2516 4.154347 GAGGGGCAGCTCGTGAGG 62.154 72.222 0.00 0.00 0.00 3.86
2504 2540 7.029563 GGAAAAACATAATTCTTCAGCGACAT 58.970 34.615 0.00 0.00 0.00 3.06
2521 2557 4.156008 GCGACATGACCAAAATACTTTCCT 59.844 41.667 0.00 0.00 0.00 3.36
2527 2563 2.897326 ACCAAAATACTTTCCTGTGCCC 59.103 45.455 0.00 0.00 0.00 5.36
2538 2574 1.237285 CCTGTGCCCGAAGTTGAAGG 61.237 60.000 0.00 0.00 0.00 3.46
2555 2591 6.929606 AGTTGAAGGTCATAGAAGTTGTGTAC 59.070 38.462 0.00 0.00 0.00 2.90
2668 2704 8.830201 TTTGTGGATTAAAACTTTCATCATGG 57.170 30.769 0.00 0.00 0.00 3.66
2680 2716 6.357367 ACTTTCATCATGGGTATGGTAACTC 58.643 40.000 0.00 0.00 34.97 3.01
2683 2719 2.754465 TCATGGGTATGGTAACTCCGT 58.246 47.619 0.00 0.00 39.52 4.69
2698 2734 0.179111 TCCGTCATGATCCTCGTTGC 60.179 55.000 0.00 0.00 0.00 4.17
2702 2738 0.179111 TCATGATCCTCGTTGCGTCC 60.179 55.000 0.00 0.00 0.00 4.79
2754 2790 7.668525 AATTTGCTAGTACTGGTACTTCAAC 57.331 36.000 16.95 6.87 43.35 3.18
2756 2792 5.386958 TGCTAGTACTGGTACTTCAACAG 57.613 43.478 16.95 9.98 43.35 3.16
2757 2793 4.219944 TGCTAGTACTGGTACTTCAACAGG 59.780 45.833 16.95 3.46 43.35 4.00
2758 2794 3.679824 AGTACTGGTACTTCAACAGGC 57.320 47.619 7.51 0.00 43.35 4.85
2760 2796 1.045407 ACTGGTACTTCAACAGGCGA 58.955 50.000 0.00 0.00 36.57 5.54
2761 2797 1.414919 ACTGGTACTTCAACAGGCGAA 59.585 47.619 0.00 0.00 36.57 4.70
2763 2799 2.480419 CTGGTACTTCAACAGGCGAAAG 59.520 50.000 0.00 0.00 0.00 2.62
2816 2854 2.967599 ATTCTCGCTACAGCACATCA 57.032 45.000 1.61 0.00 42.21 3.07
2825 2863 1.140161 CAGCACATCAAATGGGGCG 59.860 57.895 0.00 0.00 38.95 6.13
2826 2864 2.202783 GCACATCAAATGGGGCGC 60.203 61.111 0.00 0.00 33.18 6.53
2832 2870 1.039233 ATCAAATGGGGCGCAGAAGG 61.039 55.000 10.83 0.00 0.00 3.46
2863 2901 2.843401 TTCACTTTGCTACCCGCTTA 57.157 45.000 0.00 0.00 40.11 3.09
2866 2904 2.027561 TCACTTTGCTACCCGCTTATGT 60.028 45.455 0.00 0.00 40.11 2.29
2870 2908 4.403432 ACTTTGCTACCCGCTTATGTACTA 59.597 41.667 0.00 0.00 40.11 1.82
2929 2971 7.970061 TGCTCTGTTATAATGTTGATGCTTTTC 59.030 33.333 0.00 0.00 0.00 2.29
2960 3002 1.669265 GCGGTGGTGGATAAAGCTAAC 59.331 52.381 0.00 0.00 0.00 2.34
2988 3058 1.376609 GGCGCAAAGTGTCCCTATGG 61.377 60.000 10.83 0.00 0.00 2.74
3003 3073 7.504911 GTGTCCCTATGGAAACTATAGTACTCA 59.495 40.741 5.65 5.24 44.47 3.41
3017 3087 3.572584 AGTACTCAACTAAAGCCGAACG 58.427 45.455 0.00 0.00 36.36 3.95
3020 3090 2.993899 ACTCAACTAAAGCCGAACGATG 59.006 45.455 0.00 0.00 0.00 3.84
3023 3093 2.005971 ACTAAAGCCGAACGATGTCC 57.994 50.000 0.00 0.00 0.00 4.02
3059 3129 7.065324 TGTGTAGAACAAGTCTTAGTTTTGTGG 59.935 37.037 5.29 0.00 37.84 4.17
3118 3188 6.623486 TCACAGATGCATAATTTCCAAACAG 58.377 36.000 0.00 0.00 0.00 3.16
3176 3247 3.895232 AGTTAGAATGTGATGGCGAGT 57.105 42.857 0.00 0.00 0.00 4.18
3178 3249 4.579869 AGTTAGAATGTGATGGCGAGTTT 58.420 39.130 0.00 0.00 0.00 2.66
3179 3250 5.003804 AGTTAGAATGTGATGGCGAGTTTT 58.996 37.500 0.00 0.00 0.00 2.43
3186 3257 0.169009 GATGGCGAGTTTTGAGTGGC 59.831 55.000 0.00 0.00 0.00 5.01
3237 3308 7.987458 ACTGTGGAATGATGTAACTAGGTTATG 59.013 37.037 0.00 0.00 30.49 1.90
3263 3335 8.424731 GTTTTGTATCAGCAAACGAAATTAAGG 58.575 33.333 0.00 0.00 37.98 2.69
3265 3337 7.209471 TGTATCAGCAAACGAAATTAAGGTT 57.791 32.000 0.00 0.00 0.00 3.50
3266 3338 8.325421 TGTATCAGCAAACGAAATTAAGGTTA 57.675 30.769 0.00 0.00 0.00 2.85
3267 3339 8.952278 TGTATCAGCAAACGAAATTAAGGTTAT 58.048 29.630 0.00 0.00 0.00 1.89
3299 3371 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3301 3373 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3303 3375 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
3307 3379 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
3308 3380 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
3361 3445 3.181465 ACAGAGGGAGTATAATTGTGCGG 60.181 47.826 0.00 0.00 0.00 5.69
3366 3450 2.484770 GGAGTATAATTGTGCGGCTGGA 60.485 50.000 0.00 0.00 0.00 3.86
3367 3451 3.403038 GAGTATAATTGTGCGGCTGGAT 58.597 45.455 0.00 0.00 0.00 3.41
3368 3452 3.141398 AGTATAATTGTGCGGCTGGATG 58.859 45.455 0.00 0.00 0.00 3.51
3380 3464 2.159184 CGGCTGGATGATAGCGACATAT 60.159 50.000 0.00 0.00 42.03 1.78
3390 3474 5.696822 TGATAGCGACATATACTTCGGTTC 58.303 41.667 13.05 11.02 43.03 3.62
3394 3478 3.050619 CGACATATACTTCGGTTCTGCC 58.949 50.000 0.00 0.00 0.00 4.85
3398 3482 4.081087 ACATATACTTCGGTTCTGCCTGTT 60.081 41.667 0.00 0.00 34.25 3.16
3409 3493 5.296780 CGGTTCTGCCTGTTGTTATATCATT 59.703 40.000 0.00 0.00 34.25 2.57
3418 3502 7.812191 GCCTGTTGTTATATCATTCACAAACAA 59.188 33.333 0.00 0.00 35.21 2.83
3436 3520 8.617809 CACAAACAACTTACCAGTTAACTACAT 58.382 33.333 8.04 0.00 41.69 2.29
3439 3523 8.967664 AACAACTTACCAGTTAACTACATCAA 57.032 30.769 8.04 0.00 41.69 2.57
3442 3526 7.069877 ACTTACCAGTTAACTACATCAACCA 57.930 36.000 8.04 0.00 0.00 3.67
3447 3531 6.170506 CCAGTTAACTACATCAACCAGCTTA 58.829 40.000 8.04 0.00 0.00 3.09
3470 3554 2.303163 TGTCGCGGCATATTAACTGT 57.697 45.000 10.57 0.00 0.00 3.55
3473 3557 3.067040 TGTCGCGGCATATTAACTGTCTA 59.933 43.478 10.57 0.00 0.00 2.59
3509 3594 9.050601 CAATCTATTCTGGTGATCCTAACTTTC 57.949 37.037 0.00 0.00 34.23 2.62
3516 3601 4.994852 TGGTGATCCTAACTTTCTTTCGTG 59.005 41.667 0.00 0.00 34.23 4.35
3518 3603 6.161381 GGTGATCCTAACTTTCTTTCGTGTA 58.839 40.000 0.00 0.00 0.00 2.90
3540 3625 7.747357 GTGTATAAAACAATCCACGTACAAAGG 59.253 37.037 0.00 0.00 40.63 3.11
3547 3632 3.048337 TCCACGTACAAAGGGTTGATC 57.952 47.619 0.00 0.00 38.20 2.92
3557 3642 4.892934 ACAAAGGGTTGATCTACTTGCAAA 59.107 37.500 0.00 0.00 38.20 3.68
3587 3672 4.580868 TGTTGTAGGAAAGTGTGTTGTCA 58.419 39.130 0.00 0.00 0.00 3.58
3593 3678 4.079253 AGGAAAGTGTGTTGTCAGTGTTT 58.921 39.130 0.00 0.00 0.00 2.83
3600 3685 4.154195 GTGTGTTGTCAGTGTTTTGAGACT 59.846 41.667 0.00 0.00 32.41 3.24
3602 3687 4.391830 GTGTTGTCAGTGTTTTGAGACTGA 59.608 41.667 2.68 2.68 44.99 3.41
3608 3693 2.939103 AGTGTTTTGAGACTGACAGTGC 59.061 45.455 14.14 5.47 0.00 4.40
3610 3695 2.938451 TGTTTTGAGACTGACAGTGCTG 59.062 45.455 14.14 0.00 0.00 4.41
3617 3702 2.910205 CTGACAGTGCTGTGAGTGG 58.090 57.895 9.80 0.00 45.05 4.00
3618 3703 0.105593 CTGACAGTGCTGTGAGTGGT 59.894 55.000 9.80 0.00 45.05 4.16
3619 3704 1.341209 CTGACAGTGCTGTGAGTGGTA 59.659 52.381 9.80 0.00 45.05 3.25
3620 3705 1.341209 TGACAGTGCTGTGAGTGGTAG 59.659 52.381 9.80 0.00 45.05 3.18
3621 3706 0.034059 ACAGTGCTGTGAGTGGTAGC 59.966 55.000 3.80 0.00 43.11 3.58
3622 3707 0.033920 CAGTGCTGTGAGTGGTAGCA 59.966 55.000 0.00 0.00 44.45 3.49
3623 3708 0.319728 AGTGCTGTGAGTGGTAGCAG 59.680 55.000 0.00 0.00 46.91 4.24
3624 3709 0.671781 GTGCTGTGAGTGGTAGCAGG 60.672 60.000 0.00 0.00 46.91 4.85
3625 3710 1.121407 TGCTGTGAGTGGTAGCAGGT 61.121 55.000 0.00 0.00 42.05 4.00
3626 3711 0.035458 GCTGTGAGTGGTAGCAGGTT 59.965 55.000 0.00 0.00 37.40 3.50
3627 3712 1.543429 GCTGTGAGTGGTAGCAGGTTT 60.543 52.381 0.00 0.00 37.40 3.27
3628 3713 2.146342 CTGTGAGTGGTAGCAGGTTTG 58.854 52.381 0.00 0.00 0.00 2.93
3629 3714 1.488812 TGTGAGTGGTAGCAGGTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
3630 3715 2.092646 TGTGAGTGGTAGCAGGTTTGTT 60.093 45.455 0.00 0.00 0.00 2.83
3631 3716 2.548480 GTGAGTGGTAGCAGGTTTGTTC 59.452 50.000 0.00 0.00 0.00 3.18
3632 3717 2.171659 TGAGTGGTAGCAGGTTTGTTCA 59.828 45.455 0.00 0.00 0.00 3.18
3633 3718 3.211045 GAGTGGTAGCAGGTTTGTTCAA 58.789 45.455 0.00 0.00 0.00 2.69
3634 3719 3.214328 AGTGGTAGCAGGTTTGTTCAAG 58.786 45.455 0.00 0.00 0.00 3.02
3635 3720 2.293399 GTGGTAGCAGGTTTGTTCAAGG 59.707 50.000 0.00 0.00 0.00 3.61
3636 3721 2.092103 TGGTAGCAGGTTTGTTCAAGGT 60.092 45.455 0.00 0.00 0.00 3.50
3637 3722 2.293399 GGTAGCAGGTTTGTTCAAGGTG 59.707 50.000 0.00 0.00 0.00 4.00
3638 3723 1.402787 AGCAGGTTTGTTCAAGGTGG 58.597 50.000 0.00 0.00 0.00 4.61
3639 3724 1.111277 GCAGGTTTGTTCAAGGTGGT 58.889 50.000 0.00 0.00 0.00 4.16
3640 3725 2.092103 AGCAGGTTTGTTCAAGGTGGTA 60.092 45.455 0.00 0.00 0.00 3.25
3641 3726 2.293399 GCAGGTTTGTTCAAGGTGGTAG 59.707 50.000 0.00 0.00 0.00 3.18
3642 3727 2.293399 CAGGTTTGTTCAAGGTGGTAGC 59.707 50.000 0.00 0.00 0.00 3.58
3643 3728 1.265905 GGTTTGTTCAAGGTGGTAGCG 59.734 52.381 0.00 0.00 0.00 4.26
3644 3729 0.948678 TTTGTTCAAGGTGGTAGCGC 59.051 50.000 0.00 0.00 0.00 5.92
3645 3730 0.179043 TTGTTCAAGGTGGTAGCGCA 60.179 50.000 11.47 0.00 0.00 6.09
3646 3731 0.882927 TGTTCAAGGTGGTAGCGCAC 60.883 55.000 11.47 5.73 0.00 5.34
3647 3732 1.666553 TTCAAGGTGGTAGCGCACG 60.667 57.895 11.47 0.00 0.00 5.34
3648 3733 2.357034 CAAGGTGGTAGCGCACGT 60.357 61.111 11.47 0.00 0.00 4.49
3649 3734 2.357034 AAGGTGGTAGCGCACGTG 60.357 61.111 12.28 12.28 0.00 4.49
3652 3737 3.118454 GTGGTAGCGCACGTGCAT 61.118 61.111 37.03 27.25 42.21 3.96
3653 3738 3.117812 TGGTAGCGCACGTGCATG 61.118 61.111 37.03 24.05 42.21 4.06
3654 3739 2.813474 GGTAGCGCACGTGCATGA 60.813 61.111 37.03 19.92 42.21 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.246360 TGGGTGAGTGTATGTGAGCG 59.754 55.000 0.00 0.00 0.00 5.03
1 2 2.698855 ATGGGTGAGTGTATGTGAGC 57.301 50.000 0.00 0.00 0.00 4.26
19 20 4.261155 GGATGTGTGTGCATGCGTTTATAT 60.261 41.667 14.09 3.59 0.00 0.86
23 24 0.039256 GGATGTGTGTGCATGCGTTT 60.039 50.000 14.09 0.00 0.00 3.60
40 41 2.294449 AGGTGCTCATAGCGATAGGA 57.706 50.000 0.00 0.00 46.26 2.94
42 43 5.773575 TCTTAAAGGTGCTCATAGCGATAG 58.226 41.667 0.00 0.00 46.26 2.08
45 46 3.699538 TCTCTTAAAGGTGCTCATAGCGA 59.300 43.478 0.00 0.00 46.26 4.93
47 48 4.808364 CAGTCTCTTAAAGGTGCTCATAGC 59.192 45.833 0.00 0.00 42.82 2.97
97 98 2.728922 GAGACGCCTATGGTAACTTCG 58.271 52.381 0.00 0.00 37.61 3.79
117 118 2.126071 ACATTCCCGTCGACTGCG 60.126 61.111 14.70 0.00 39.35 5.18
129 130 2.675317 CGTTCAGTGGGAGGAGACATTC 60.675 54.545 0.00 0.00 0.00 2.67
132 133 0.178973 TCGTTCAGTGGGAGGAGACA 60.179 55.000 0.00 0.00 0.00 3.41
142 143 2.754472 TCCTGTGATGTTCGTTCAGTG 58.246 47.619 0.00 0.00 0.00 3.66
143 144 3.393800 CTTCCTGTGATGTTCGTTCAGT 58.606 45.455 0.00 0.00 0.00 3.41
157 158 4.340617 TGAATTTATTTCGGCCTTCCTGT 58.659 39.130 0.00 0.00 37.13 4.00
159 160 3.954258 CCTGAATTTATTTCGGCCTTCCT 59.046 43.478 0.00 0.00 39.09 3.36
166 167 9.669353 CTCACATTATTCCTGAATTTATTTCGG 57.331 33.333 0.00 0.00 39.97 4.30
167 168 9.173939 GCTCACATTATTCCTGAATTTATTTCG 57.826 33.333 0.00 0.00 37.13 3.46
189 190 5.880332 GGTTCAAGTTATAGATTGGTGCTCA 59.120 40.000 0.00 0.00 0.00 4.26
195 196 5.590259 CACCAGGGTTCAAGTTATAGATTGG 59.410 44.000 0.00 0.00 0.00 3.16
214 215 2.000701 TGGTATCCCAGCCCACCAG 61.001 63.158 0.00 0.00 36.15 4.00
216 217 2.595655 GTGGTATCCCAGCCCACC 59.404 66.667 0.00 0.00 42.94 4.61
232 233 9.699410 CTATGATTAGATGATTAGGAGGAGAGT 57.301 37.037 0.00 0.00 0.00 3.24
233 234 9.135189 CCTATGATTAGATGATTAGGAGGAGAG 57.865 40.741 0.00 0.00 0.00 3.20
235 236 8.837099 ACCTATGATTAGATGATTAGGAGGAG 57.163 38.462 0.00 0.00 0.00 3.69
243 244 6.467677 CGGACCAACCTATGATTAGATGATT 58.532 40.000 0.00 0.00 36.31 2.57
250 251 2.120312 TGGCGGACCAACCTATGATTA 58.880 47.619 2.38 0.00 45.37 1.75
253 254 4.138665 TGGCGGACCAACCTATGA 57.861 55.556 2.38 0.00 45.37 2.15
365 369 7.010460 CCCATGTGAGTTCTCTTTTTGTTTTTC 59.990 37.037 1.53 0.00 0.00 2.29
394 398 0.910088 AGAGACCAACTACCTGGGCC 60.910 60.000 0.00 0.00 46.98 5.80
410 414 2.770134 ACGAGAGTGACGCCTAGAG 58.230 57.895 0.00 0.00 46.97 2.43
420 424 4.911160 CCCTAGCGGGTAATACGAGAGTG 61.911 56.522 0.00 0.00 45.54 3.51
421 425 2.813354 CCCTAGCGGGTAATACGAGAGT 60.813 54.545 0.00 0.00 46.12 3.24
512 524 2.047274 CCACATCCGTCCAAGCGT 60.047 61.111 0.00 0.00 0.00 5.07
519 531 2.509336 CTCGCCACCACATCCGTC 60.509 66.667 0.00 0.00 0.00 4.79
534 546 0.392336 CATGCCCTGAGGAGTAGCTC 59.608 60.000 0.00 0.00 33.47 4.09
547 559 1.270550 GGCTATGCATTGTACATGCCC 59.729 52.381 20.37 13.59 43.94 5.36
548 560 2.233271 AGGCTATGCATTGTACATGCC 58.767 47.619 20.37 7.92 43.94 4.40
549 561 3.996150 AAGGCTATGCATTGTACATGC 57.004 42.857 3.54 17.91 44.76 4.06
550 562 5.532406 ACCTTAAGGCTATGCATTGTACATG 59.468 40.000 21.92 0.00 39.32 3.21
551 563 5.532406 CACCTTAAGGCTATGCATTGTACAT 59.468 40.000 21.92 0.00 39.32 2.29
552 564 4.881273 CACCTTAAGGCTATGCATTGTACA 59.119 41.667 21.92 0.00 39.32 2.90
553 565 5.123227 TCACCTTAAGGCTATGCATTGTAC 58.877 41.667 21.92 0.42 39.32 2.90
554 566 5.366482 TCACCTTAAGGCTATGCATTGTA 57.634 39.130 21.92 0.00 39.32 2.41
555 567 4.235079 TCACCTTAAGGCTATGCATTGT 57.765 40.909 21.92 0.00 39.32 2.71
556 568 5.117355 CATCACCTTAAGGCTATGCATTG 57.883 43.478 21.92 9.59 39.32 2.82
577 589 4.075854 TACGTGGCATGCGAGGCA 62.076 61.111 20.34 6.76 44.86 4.75
578 590 3.264897 CTACGTGGCATGCGAGGC 61.265 66.667 20.34 3.56 0.00 4.70
579 591 2.586079 CCTACGTGGCATGCGAGG 60.586 66.667 19.08 19.08 0.00 4.63
580 592 1.421410 GAACCTACGTGGCATGCGAG 61.421 60.000 12.44 7.86 40.22 5.03
581 593 1.447140 GAACCTACGTGGCATGCGA 60.447 57.895 12.44 4.51 40.22 5.10
582 594 2.798501 CGAACCTACGTGGCATGCG 61.799 63.158 12.44 0.54 40.22 4.73
583 595 2.461110 CCGAACCTACGTGGCATGC 61.461 63.158 9.90 9.90 40.22 4.06
584 596 0.179084 ATCCGAACCTACGTGGCATG 60.179 55.000 4.87 4.87 40.22 4.06
585 597 1.405872 TATCCGAACCTACGTGGCAT 58.594 50.000 0.00 0.00 40.22 4.40
586 598 1.067974 CATATCCGAACCTACGTGGCA 59.932 52.381 0.00 0.00 40.22 4.92
587 599 1.338973 TCATATCCGAACCTACGTGGC 59.661 52.381 0.00 0.00 40.22 5.01
588 600 2.603892 CGTCATATCCGAACCTACGTGG 60.604 54.545 0.00 0.00 42.93 4.94
589 601 2.032550 ACGTCATATCCGAACCTACGTG 59.967 50.000 0.00 0.00 40.23 4.49
590 602 2.292267 ACGTCATATCCGAACCTACGT 58.708 47.619 0.00 0.00 37.28 3.57
591 603 4.472691 TTACGTCATATCCGAACCTACG 57.527 45.455 0.00 0.00 35.17 3.51
592 604 5.825507 ACTTTACGTCATATCCGAACCTAC 58.174 41.667 0.00 0.00 0.00 3.18
593 605 6.205464 CCTACTTTACGTCATATCCGAACCTA 59.795 42.308 0.00 0.00 0.00 3.08
594 606 4.996788 ACTTTACGTCATATCCGAACCT 57.003 40.909 0.00 0.00 0.00 3.50
595 607 5.218139 CCTACTTTACGTCATATCCGAACC 58.782 45.833 0.00 0.00 0.00 3.62
596 608 5.825507 ACCTACTTTACGTCATATCCGAAC 58.174 41.667 0.00 0.00 0.00 3.95
597 609 6.455360 AACCTACTTTACGTCATATCCGAA 57.545 37.500 0.00 0.00 0.00 4.30
598 610 5.277490 CGAACCTACTTTACGTCATATCCGA 60.277 44.000 0.00 0.00 0.00 4.55
599 611 4.908156 CGAACCTACTTTACGTCATATCCG 59.092 45.833 0.00 0.00 0.00 4.18
600 612 5.009010 TCCGAACCTACTTTACGTCATATCC 59.991 44.000 0.00 0.00 0.00 2.59
601 613 6.064846 TCCGAACCTACTTTACGTCATATC 57.935 41.667 0.00 0.00 0.00 1.63
602 614 6.645790 ATCCGAACCTACTTTACGTCATAT 57.354 37.500 0.00 0.00 0.00 1.78
603 615 6.205464 CCTATCCGAACCTACTTTACGTCATA 59.795 42.308 0.00 0.00 0.00 2.15
604 616 4.996788 ATCCGAACCTACTTTACGTCAT 57.003 40.909 0.00 0.00 0.00 3.06
605 617 4.336433 CCTATCCGAACCTACTTTACGTCA 59.664 45.833 0.00 0.00 0.00 4.35
606 618 4.261363 CCCTATCCGAACCTACTTTACGTC 60.261 50.000 0.00 0.00 0.00 4.34
607 619 3.633986 CCCTATCCGAACCTACTTTACGT 59.366 47.826 0.00 0.00 0.00 3.57
608 620 3.885297 TCCCTATCCGAACCTACTTTACG 59.115 47.826 0.00 0.00 0.00 3.18
609 621 5.859205 TTCCCTATCCGAACCTACTTTAC 57.141 43.478 0.00 0.00 0.00 2.01
610 622 5.163519 CGTTTCCCTATCCGAACCTACTTTA 60.164 44.000 0.00 0.00 0.00 1.85
611 623 4.382362 CGTTTCCCTATCCGAACCTACTTT 60.382 45.833 0.00 0.00 0.00 2.66
612 624 3.131755 CGTTTCCCTATCCGAACCTACTT 59.868 47.826 0.00 0.00 0.00 2.24
613 625 2.692041 CGTTTCCCTATCCGAACCTACT 59.308 50.000 0.00 0.00 0.00 2.57
614 626 2.223900 CCGTTTCCCTATCCGAACCTAC 60.224 54.545 0.00 0.00 0.00 3.18
615 627 2.034124 CCGTTTCCCTATCCGAACCTA 58.966 52.381 0.00 0.00 0.00 3.08
616 628 0.828677 CCGTTTCCCTATCCGAACCT 59.171 55.000 0.00 0.00 0.00 3.50
617 629 0.179065 CCCGTTTCCCTATCCGAACC 60.179 60.000 0.00 0.00 0.00 3.62
618 630 0.826062 TCCCGTTTCCCTATCCGAAC 59.174 55.000 0.00 0.00 0.00 3.95
619 631 1.690352 GATCCCGTTTCCCTATCCGAA 59.310 52.381 0.00 0.00 0.00 4.30
620 632 1.335145 GATCCCGTTTCCCTATCCGA 58.665 55.000 0.00 0.00 0.00 4.55
621 633 0.320697 GGATCCCGTTTCCCTATCCG 59.679 60.000 0.00 0.00 0.00 4.18
622 634 1.624312 GAGGATCCCGTTTCCCTATCC 59.376 57.143 8.55 0.00 37.05 2.59
623 635 2.563620 GAGAGGATCCCGTTTCCCTATC 59.436 54.545 8.55 0.00 33.66 2.08
624 636 2.610873 GAGAGGATCCCGTTTCCCTAT 58.389 52.381 8.55 0.00 33.66 2.57
625 637 1.412649 GGAGAGGATCCCGTTTCCCTA 60.413 57.143 8.55 0.00 43.01 3.53
626 638 0.691413 GGAGAGGATCCCGTTTCCCT 60.691 60.000 8.55 0.00 43.01 4.20
627 639 1.830836 GGAGAGGATCCCGTTTCCC 59.169 63.158 8.55 0.00 43.01 3.97
640 652 3.028921 GCACCTGCCTCCTGGAGAG 62.029 68.421 25.18 14.61 42.83 3.20
641 653 3.005539 GCACCTGCCTCCTGGAGA 61.006 66.667 25.18 5.07 34.43 3.71
642 654 2.600729 AAGCACCTGCCTCCTGGAG 61.601 63.158 17.02 17.02 43.38 3.86
643 655 2.530151 AAGCACCTGCCTCCTGGA 60.530 61.111 0.00 0.00 43.38 3.86
644 656 2.360852 CAAGCACCTGCCTCCTGG 60.361 66.667 0.00 0.00 43.38 4.45
645 657 1.073722 TTCAAGCACCTGCCTCCTG 59.926 57.895 0.00 0.00 43.38 3.86
646 658 1.073897 GTTCAAGCACCTGCCTCCT 59.926 57.895 0.00 0.00 43.38 3.69
647 659 1.228245 TGTTCAAGCACCTGCCTCC 60.228 57.895 0.00 0.00 43.38 4.30
648 660 0.250467 TCTGTTCAAGCACCTGCCTC 60.250 55.000 0.00 0.00 43.38 4.70
649 661 0.183492 TTCTGTTCAAGCACCTGCCT 59.817 50.000 0.00 0.00 43.38 4.75
650 662 1.032014 TTTCTGTTCAAGCACCTGCC 58.968 50.000 0.00 0.00 43.38 4.85
651 663 2.869233 TTTTCTGTTCAAGCACCTGC 57.131 45.000 0.00 0.00 42.49 4.85
652 664 4.107622 CACTTTTTCTGTTCAAGCACCTG 58.892 43.478 0.00 0.00 0.00 4.00
653 665 3.763897 ACACTTTTTCTGTTCAAGCACCT 59.236 39.130 0.00 0.00 0.00 4.00
654 666 3.859386 CACACTTTTTCTGTTCAAGCACC 59.141 43.478 0.00 0.00 0.00 5.01
655 667 3.859386 CCACACTTTTTCTGTTCAAGCAC 59.141 43.478 0.00 0.00 0.00 4.40
656 668 3.509575 ACCACACTTTTTCTGTTCAAGCA 59.490 39.130 0.00 0.00 0.00 3.91
657 669 4.105486 GACCACACTTTTTCTGTTCAAGC 58.895 43.478 0.00 0.00 0.00 4.01
658 670 4.672409 GGACCACACTTTTTCTGTTCAAG 58.328 43.478 0.00 0.00 0.00 3.02
659 671 3.127895 CGGACCACACTTTTTCTGTTCAA 59.872 43.478 0.00 0.00 0.00 2.69
660 672 2.680841 CGGACCACACTTTTTCTGTTCA 59.319 45.455 0.00 0.00 0.00 3.18
661 673 2.940410 TCGGACCACACTTTTTCTGTTC 59.060 45.455 0.00 0.00 0.00 3.18
662 674 2.993937 TCGGACCACACTTTTTCTGTT 58.006 42.857 0.00 0.00 0.00 3.16
663 675 2.702592 TCGGACCACACTTTTTCTGT 57.297 45.000 0.00 0.00 0.00 3.41
664 676 3.002348 GTCTTCGGACCACACTTTTTCTG 59.998 47.826 0.00 0.00 38.93 3.02
665 677 3.203716 GTCTTCGGACCACACTTTTTCT 58.796 45.455 0.00 0.00 38.93 2.52
666 678 2.940410 TGTCTTCGGACCACACTTTTTC 59.060 45.455 0.00 0.00 43.85 2.29
667 679 2.993937 TGTCTTCGGACCACACTTTTT 58.006 42.857 0.00 0.00 43.85 1.94
668 680 2.702592 TGTCTTCGGACCACACTTTT 57.297 45.000 0.00 0.00 43.85 2.27
669 681 2.702592 TTGTCTTCGGACCACACTTT 57.297 45.000 0.00 0.00 43.85 2.66
670 682 2.702592 TTTGTCTTCGGACCACACTT 57.297 45.000 0.00 0.00 43.85 3.16
671 683 2.681344 GTTTTTGTCTTCGGACCACACT 59.319 45.455 0.00 0.00 43.85 3.55
672 684 2.681344 AGTTTTTGTCTTCGGACCACAC 59.319 45.455 0.00 0.00 43.85 3.82
673 685 2.680841 CAGTTTTTGTCTTCGGACCACA 59.319 45.455 0.00 0.00 43.85 4.17
674 686 2.940410 TCAGTTTTTGTCTTCGGACCAC 59.060 45.455 0.00 0.00 43.85 4.16
675 687 3.269538 TCAGTTTTTGTCTTCGGACCA 57.730 42.857 0.00 0.00 43.85 4.02
676 688 4.625972 TTTCAGTTTTTGTCTTCGGACC 57.374 40.909 0.00 0.00 43.85 4.46
677 689 5.034797 CCTTTTCAGTTTTTGTCTTCGGAC 58.965 41.667 0.00 0.00 44.66 4.79
678 690 4.703093 ACCTTTTCAGTTTTTGTCTTCGGA 59.297 37.500 0.00 0.00 0.00 4.55
679 691 4.993905 ACCTTTTCAGTTTTTGTCTTCGG 58.006 39.130 0.00 0.00 0.00 4.30
680 692 6.090129 TCAACCTTTTCAGTTTTTGTCTTCG 58.910 36.000 0.00 0.00 0.00 3.79
681 693 7.598869 ACTTCAACCTTTTCAGTTTTTGTCTTC 59.401 33.333 0.00 0.00 0.00 2.87
682 694 7.384932 CACTTCAACCTTTTCAGTTTTTGTCTT 59.615 33.333 0.00 0.00 0.00 3.01
683 695 6.868339 CACTTCAACCTTTTCAGTTTTTGTCT 59.132 34.615 0.00 0.00 0.00 3.41
684 696 6.866248 TCACTTCAACCTTTTCAGTTTTTGTC 59.134 34.615 0.00 0.00 0.00 3.18
685 697 6.754193 TCACTTCAACCTTTTCAGTTTTTGT 58.246 32.000 0.00 0.00 0.00 2.83
686 698 7.650834 TTCACTTCAACCTTTTCAGTTTTTG 57.349 32.000 0.00 0.00 0.00 2.44
687 699 8.669946 TTTTCACTTCAACCTTTTCAGTTTTT 57.330 26.923 0.00 0.00 0.00 1.94
688 700 8.669946 TTTTTCACTTCAACCTTTTCAGTTTT 57.330 26.923 0.00 0.00 0.00 2.43
689 701 8.846943 ATTTTTCACTTCAACCTTTTCAGTTT 57.153 26.923 0.00 0.00 0.00 2.66
690 702 9.586435 CTATTTTTCACTTCAACCTTTTCAGTT 57.414 29.630 0.00 0.00 0.00 3.16
691 703 8.966868 TCTATTTTTCACTTCAACCTTTTCAGT 58.033 29.630 0.00 0.00 0.00 3.41
692 704 9.455847 CTCTATTTTTCACTTCAACCTTTTCAG 57.544 33.333 0.00 0.00 0.00 3.02
693 705 9.184523 TCTCTATTTTTCACTTCAACCTTTTCA 57.815 29.630 0.00 0.00 0.00 2.69
695 707 9.971922 CATCTCTATTTTTCACTTCAACCTTTT 57.028 29.630 0.00 0.00 0.00 2.27
696 708 8.084684 GCATCTCTATTTTTCACTTCAACCTTT 58.915 33.333 0.00 0.00 0.00 3.11
697 709 7.231317 TGCATCTCTATTTTTCACTTCAACCTT 59.769 33.333 0.00 0.00 0.00 3.50
698 710 6.716628 TGCATCTCTATTTTTCACTTCAACCT 59.283 34.615 0.00 0.00 0.00 3.50
699 711 6.913170 TGCATCTCTATTTTTCACTTCAACC 58.087 36.000 0.00 0.00 0.00 3.77
700 712 8.025445 ACATGCATCTCTATTTTTCACTTCAAC 58.975 33.333 0.00 0.00 0.00 3.18
701 713 8.024865 CACATGCATCTCTATTTTTCACTTCAA 58.975 33.333 0.00 0.00 0.00 2.69
702 714 7.175467 ACACATGCATCTCTATTTTTCACTTCA 59.825 33.333 0.00 0.00 0.00 3.02
703 715 7.533426 ACACATGCATCTCTATTTTTCACTTC 58.467 34.615 0.00 0.00 0.00 3.01
704 716 7.458409 ACACATGCATCTCTATTTTTCACTT 57.542 32.000 0.00 0.00 0.00 3.16
705 717 7.826252 AGTACACATGCATCTCTATTTTTCACT 59.174 33.333 0.00 0.00 0.00 3.41
706 718 7.978982 AGTACACATGCATCTCTATTTTTCAC 58.021 34.615 0.00 0.00 0.00 3.18
707 719 9.665719 TTAGTACACATGCATCTCTATTTTTCA 57.334 29.630 0.00 0.00 0.00 2.69
710 722 9.672673 ACTTTAGTACACATGCATCTCTATTTT 57.327 29.630 0.00 0.00 0.00 1.82
711 723 9.319143 GACTTTAGTACACATGCATCTCTATTT 57.681 33.333 0.00 0.00 0.00 1.40
712 724 8.700051 AGACTTTAGTACACATGCATCTCTATT 58.300 33.333 0.00 0.00 0.00 1.73
713 725 8.243961 AGACTTTAGTACACATGCATCTCTAT 57.756 34.615 0.00 0.00 0.00 1.98
714 726 7.646548 AGACTTTAGTACACATGCATCTCTA 57.353 36.000 0.00 0.00 0.00 2.43
715 727 6.537453 AGACTTTAGTACACATGCATCTCT 57.463 37.500 0.00 0.00 0.00 3.10
716 728 7.602517 AAAGACTTTAGTACACATGCATCTC 57.397 36.000 0.00 0.00 0.00 2.75
717 729 9.672673 AATAAAGACTTTAGTACACATGCATCT 57.327 29.630 12.93 0.00 0.00 2.90
750 762 7.014230 GCTATCATTAGTGGGCCTCATTAAAAA 59.986 37.037 4.53 0.57 32.53 1.94
751 763 6.490040 GCTATCATTAGTGGGCCTCATTAAAA 59.510 38.462 4.53 0.90 32.53 1.52
752 764 6.003950 GCTATCATTAGTGGGCCTCATTAAA 58.996 40.000 4.53 0.00 32.53 1.52
753 765 5.310594 AGCTATCATTAGTGGGCCTCATTAA 59.689 40.000 4.53 7.15 33.16 1.40
754 766 4.846367 AGCTATCATTAGTGGGCCTCATTA 59.154 41.667 4.53 0.00 0.00 1.90
755 767 3.654806 AGCTATCATTAGTGGGCCTCATT 59.345 43.478 4.53 0.00 0.00 2.57
756 768 3.254960 AGCTATCATTAGTGGGCCTCAT 58.745 45.455 4.53 0.00 0.00 2.90
757 769 2.694397 AGCTATCATTAGTGGGCCTCA 58.306 47.619 4.53 0.00 0.00 3.86
758 770 3.406764 CAAGCTATCATTAGTGGGCCTC 58.593 50.000 4.53 0.00 0.00 4.70
759 771 2.487986 GCAAGCTATCATTAGTGGGCCT 60.488 50.000 4.53 0.00 0.00 5.19
760 772 1.882623 GCAAGCTATCATTAGTGGGCC 59.117 52.381 0.00 0.00 0.00 5.80
761 773 2.575532 TGCAAGCTATCATTAGTGGGC 58.424 47.619 0.00 0.00 0.00 5.36
762 774 4.022589 CCAATGCAAGCTATCATTAGTGGG 60.023 45.833 11.56 6.74 32.22 4.61
763 775 4.823442 TCCAATGCAAGCTATCATTAGTGG 59.177 41.667 11.56 10.40 32.22 4.00
764 776 6.381481 TTCCAATGCAAGCTATCATTAGTG 57.619 37.500 11.56 3.32 32.22 2.74
765 777 6.830324 TCTTTCCAATGCAAGCTATCATTAGT 59.170 34.615 11.56 0.00 32.22 2.24
766 778 7.268199 TCTTTCCAATGCAAGCTATCATTAG 57.732 36.000 11.56 6.52 32.22 1.73
767 779 7.643569 TTCTTTCCAATGCAAGCTATCATTA 57.356 32.000 11.56 0.00 32.22 1.90
768 780 6.534475 TTCTTTCCAATGCAAGCTATCATT 57.466 33.333 7.35 7.35 33.56 2.57
769 781 6.534475 TTTCTTTCCAATGCAAGCTATCAT 57.466 33.333 0.00 0.00 0.00 2.45
770 782 5.981088 TTTCTTTCCAATGCAAGCTATCA 57.019 34.783 0.00 0.00 0.00 2.15
800 812 9.997482 GACAAAAAGTAATTTGAGACACTTACA 57.003 29.630 6.76 0.00 41.73 2.41
801 813 9.997482 TGACAAAAAGTAATTTGAGACACTTAC 57.003 29.630 6.76 0.00 41.73 2.34
805 817 9.612620 CCTATGACAAAAAGTAATTTGAGACAC 57.387 33.333 6.76 0.00 41.73 3.67
806 818 8.792633 CCCTATGACAAAAAGTAATTTGAGACA 58.207 33.333 6.76 4.78 41.73 3.41
807 819 7.755373 GCCCTATGACAAAAAGTAATTTGAGAC 59.245 37.037 6.76 0.07 41.73 3.36
808 820 7.450014 TGCCCTATGACAAAAAGTAATTTGAGA 59.550 33.333 6.76 0.00 41.73 3.27
809 821 7.601856 TGCCCTATGACAAAAAGTAATTTGAG 58.398 34.615 6.76 0.00 41.73 3.02
810 822 7.531857 TGCCCTATGACAAAAAGTAATTTGA 57.468 32.000 6.76 0.00 41.73 2.69
813 825 9.200817 ACATATGCCCTATGACAAAAAGTAATT 57.799 29.630 1.58 0.00 39.79 1.40
814 826 8.766994 ACATATGCCCTATGACAAAAAGTAAT 57.233 30.769 1.58 0.00 39.79 1.89
815 827 9.860650 ATACATATGCCCTATGACAAAAAGTAA 57.139 29.630 1.58 0.00 39.79 2.24
816 828 9.502091 GATACATATGCCCTATGACAAAAAGTA 57.498 33.333 1.58 0.00 39.79 2.24
817 829 7.448469 GGATACATATGCCCTATGACAAAAAGT 59.552 37.037 1.58 0.00 39.79 2.66
818 830 7.448161 TGGATACATATGCCCTATGACAAAAAG 59.552 37.037 1.58 0.00 46.17 2.27
819 831 7.293828 TGGATACATATGCCCTATGACAAAAA 58.706 34.615 1.58 0.00 46.17 1.94
820 832 6.846988 TGGATACATATGCCCTATGACAAAA 58.153 36.000 1.58 0.00 46.17 2.44
821 833 6.446909 TGGATACATATGCCCTATGACAAA 57.553 37.500 1.58 0.00 46.17 2.83
837 849 8.003032 CACGTACAATAGTGGCATATGGATACA 61.003 40.741 4.56 0.00 42.39 2.29
838 850 6.310467 CACGTACAATAGTGGCATATGGATAC 59.690 42.308 4.56 0.00 34.93 2.24
839 851 6.394809 CACGTACAATAGTGGCATATGGATA 58.605 40.000 4.56 0.00 34.93 2.59
840 852 5.237815 CACGTACAATAGTGGCATATGGAT 58.762 41.667 4.56 0.00 34.93 3.41
841 853 4.627058 CACGTACAATAGTGGCATATGGA 58.373 43.478 4.56 0.00 34.93 3.41
842 854 3.186409 GCACGTACAATAGTGGCATATGG 59.814 47.826 4.56 0.00 38.68 2.74
843 855 4.389664 GCACGTACAATAGTGGCATATG 57.610 45.455 0.00 0.00 38.68 1.78
849 861 1.472728 GGAGGGCACGTACAATAGTGG 60.473 57.143 0.00 0.00 38.68 4.00
850 862 1.480954 AGGAGGGCACGTACAATAGTG 59.519 52.381 0.00 0.00 41.01 2.74
851 863 1.861982 AGGAGGGCACGTACAATAGT 58.138 50.000 0.00 0.00 0.00 2.12
852 864 2.287427 CGTAGGAGGGCACGTACAATAG 60.287 54.545 11.84 0.00 33.56 1.73
853 865 1.677576 CGTAGGAGGGCACGTACAATA 59.322 52.381 11.84 0.00 33.56 1.90
854 866 0.458669 CGTAGGAGGGCACGTACAAT 59.541 55.000 11.84 0.00 33.56 2.71
855 867 1.885157 CGTAGGAGGGCACGTACAA 59.115 57.895 11.84 0.00 33.56 2.41
856 868 3.594568 CGTAGGAGGGCACGTACA 58.405 61.111 11.84 0.00 33.56 2.90
868 880 4.517934 TCCGAGGAGGCCCGTAGG 62.518 72.222 0.00 2.82 44.34 3.18
869 881 2.700407 ATCTCCGAGGAGGCCCGTAG 62.700 65.000 18.16 0.00 42.20 3.51
870 882 2.294170 AATCTCCGAGGAGGCCCGTA 62.294 60.000 18.16 0.00 42.20 4.02
871 883 3.680920 AATCTCCGAGGAGGCCCGT 62.681 63.158 18.16 0.00 42.20 5.28
872 884 2.370647 GAAATCTCCGAGGAGGCCCG 62.371 65.000 18.16 0.00 42.20 6.13
873 885 1.051556 AGAAATCTCCGAGGAGGCCC 61.052 60.000 18.16 6.50 42.20 5.80
935 947 5.357257 TGATTATTCTTACGCTCTGGAACC 58.643 41.667 0.00 0.00 0.00 3.62
938 950 6.465439 TCTTGATTATTCTTACGCTCTGGA 57.535 37.500 0.00 0.00 0.00 3.86
1261 1273 0.392193 AACTTGCGCCATCTCTCCTG 60.392 55.000 4.18 0.00 0.00 3.86
1290 1302 0.466189 ACAAGAGCAGGTTGGTGGTG 60.466 55.000 0.00 0.00 0.00 4.17
1315 1327 0.250124 TCCAAGGACGCGACATTGTT 60.250 50.000 27.87 6.98 31.01 2.83
1354 1366 1.374252 CACAGGCACGACCAGTACC 60.374 63.158 0.00 0.00 43.14 3.34
1383 1395 1.062428 ACCCATCTATCCAAGTCCCGA 60.062 52.381 0.00 0.00 0.00 5.14
1386 1398 1.541233 CGCACCCATCTATCCAAGTCC 60.541 57.143 0.00 0.00 0.00 3.85
1423 1435 2.032860 ATCTCGATCACTTGGGGGCG 62.033 60.000 0.00 0.00 0.00 6.13
1456 1468 0.721718 GGAAACTGAATGCGAGGACG 59.278 55.000 0.00 0.00 42.93 4.79
1488 1500 2.296190 CCTTTTAAGGCGGCAAGAACTT 59.704 45.455 13.08 0.00 39.76 2.66
1503 1515 8.189119 AGAAACCATTAAGATGCAACCTTTTA 57.811 30.769 9.55 1.15 31.67 1.52
1509 1521 7.283127 TCCAGATAGAAACCATTAAGATGCAAC 59.717 37.037 0.00 0.00 31.67 4.17
1519 1531 5.255397 TGGTTGTCCAGATAGAAACCATT 57.745 39.130 1.55 0.00 44.00 3.16
1534 1546 1.160137 AGCTCTGCGAATTGGTTGTC 58.840 50.000 0.00 0.00 0.00 3.18
1548 1560 1.546476 CACCCGAAACAGAGTAGCTCT 59.454 52.381 0.00 0.00 42.11 4.09
1604 1616 9.883142 TTGACTTAATTTCTTGAAAACCATTGT 57.117 25.926 0.00 0.00 0.00 2.71
1608 1620 7.491048 GTGCTTGACTTAATTTCTTGAAAACCA 59.509 33.333 0.00 0.00 0.00 3.67
1630 1642 3.257393 CGACTAGCTTCTTCAATGTGCT 58.743 45.455 0.00 0.00 37.72 4.40
1647 1659 2.627737 GCCACAGGAGTCGACGACT 61.628 63.158 29.59 29.59 46.42 4.18
1650 1662 1.078759 GATTGCCACAGGAGTCGACG 61.079 60.000 10.46 0.00 0.00 5.12
1663 1675 1.539929 CGGATCACCAGAGAGATTGCC 60.540 57.143 0.00 0.00 35.59 4.52
1667 1679 1.407936 CACCGGATCACCAGAGAGAT 58.592 55.000 9.46 0.00 35.59 2.75
1703 1715 3.053395 ACCCAGTTGGAGATATGCAACAT 60.053 43.478 23.92 8.73 37.39 2.71
1710 1722 8.331740 CCATATGAAATACCCAGTTGGAGATAT 58.668 37.037 3.65 0.00 37.39 1.63
1770 1782 2.159599 CGATGCTTTGACAAGAGAAGCC 60.160 50.000 7.04 0.00 43.84 4.35
1791 1803 5.531634 TCACCAAGACAAAGCAAATGAATC 58.468 37.500 0.00 0.00 0.00 2.52
1816 1828 6.570789 CGTTGTTGATGTTTCAAATTGAATGC 59.429 34.615 9.41 6.56 43.29 3.56
1831 1843 0.443869 CCGAGAAGCCGTTGTTGATG 59.556 55.000 0.00 0.00 0.00 3.07
1832 1844 0.034896 ACCGAGAAGCCGTTGTTGAT 59.965 50.000 0.00 0.00 0.00 2.57
1869 1881 2.717639 AACCCGATAGCTGCAGATTT 57.282 45.000 20.43 6.17 0.00 2.17
1876 1888 1.429148 GCGTGGAAACCCGATAGCTG 61.429 60.000 0.00 0.00 0.00 4.24
1891 1903 0.526096 GCAAGGCATACCATTGCGTG 60.526 55.000 4.15 0.00 43.71 5.34
1919 1931 9.243637 GCAACATAAATGAGTAAACACAAGAAA 57.756 29.630 0.00 0.00 0.00 2.52
1953 1965 5.255397 TCTGTTAGGAACACATGGGAATT 57.745 39.130 0.00 0.00 36.25 2.17
1979 1991 2.224042 ACTCGTGTGCAAGATGAACAGA 60.224 45.455 0.00 0.00 36.39 3.41
1996 2008 3.424829 CGGTCAATTCAATTGGTCACTCG 60.425 47.826 10.30 4.24 40.61 4.18
2001 2013 8.973835 TTATTTAACGGTCAATTCAATTGGTC 57.026 30.769 10.30 4.33 40.61 4.02
2003 2015 8.032451 ACCTTATTTAACGGTCAATTCAATTGG 58.968 33.333 10.30 0.00 40.61 3.16
2063 2075 6.462552 TGTCAAAACATTCCTCACATGAAA 57.537 33.333 0.00 0.00 0.00 2.69
2078 2090 9.801873 AGTATTGTATGCCATAATTGTCAAAAC 57.198 29.630 0.00 0.00 0.00 2.43
2107 2119 6.319658 TCAAAGATCCATCCTTTTACTGATGC 59.680 38.462 0.00 0.00 37.61 3.91
2122 2134 9.705103 ATTCTCAAAATATTCCTCAAAGATCCA 57.295 29.630 0.00 0.00 0.00 3.41
2131 2143 9.947669 CATCACTCAATTCTCAAAATATTCCTC 57.052 33.333 0.00 0.00 0.00 3.71
2145 2181 8.976986 AACTGAATTTAAGCATCACTCAATTC 57.023 30.769 0.00 0.00 37.91 2.17
2212 2248 8.260114 CAGGTTAGCAAAGATTGGGAATTTAAT 58.740 33.333 0.00 0.00 0.00 1.40
2230 2266 1.953686 TGACAAGGTTTGCAGGTTAGC 59.046 47.619 0.00 0.00 0.00 3.09
2299 2335 3.412386 TCTGAACAAAGCTCCCTAAAGC 58.588 45.455 0.00 0.00 42.82 3.51
2300 2336 5.620879 GCATTCTGAACAAAGCTCCCTAAAG 60.621 44.000 0.00 0.00 0.00 1.85
2301 2337 4.218417 GCATTCTGAACAAAGCTCCCTAAA 59.782 41.667 0.00 0.00 0.00 1.85
2302 2338 3.758554 GCATTCTGAACAAAGCTCCCTAA 59.241 43.478 0.00 0.00 0.00 2.69
2303 2339 3.009473 AGCATTCTGAACAAAGCTCCCTA 59.991 43.478 0.00 0.00 0.00 3.53
2304 2340 2.165998 GCATTCTGAACAAAGCTCCCT 58.834 47.619 0.00 0.00 0.00 4.20
2305 2341 2.163211 GAGCATTCTGAACAAAGCTCCC 59.837 50.000 17.81 3.41 41.83 4.30
2306 2342 3.484334 GAGCATTCTGAACAAAGCTCC 57.516 47.619 17.81 6.96 41.83 4.70
2307 2343 3.080319 AGGAGCATTCTGAACAAAGCTC 58.920 45.455 19.26 19.26 45.65 4.09
2308 2344 3.151912 AGGAGCATTCTGAACAAAGCT 57.848 42.857 7.81 7.81 34.61 3.74
2325 2361 3.394606 AGGTAAGCTTCTCCAAACAAGGA 59.605 43.478 18.64 0.00 36.00 3.36
2377 2413 5.091261 ACATGAGATAGACCAGGAAACAC 57.909 43.478 0.00 0.00 0.00 3.32
2383 2419 6.824305 AAACAAAACATGAGATAGACCAGG 57.176 37.500 0.00 0.00 0.00 4.45
2391 2427 9.066892 TGTTAGAAGCTAAACAAAACATGAGAT 57.933 29.630 0.00 0.00 32.86 2.75
2414 2450 4.074970 GACAGGACCACAAGATTCATGTT 58.925 43.478 0.00 0.00 34.59 2.71
2456 2492 1.223211 GAGCTGCCCCTCTTTCTCC 59.777 63.158 0.00 0.00 0.00 3.71
2458 2494 1.915769 ACGAGCTGCCCCTCTTTCT 60.916 57.895 0.00 0.00 0.00 2.52
2480 2516 7.750458 TCATGTCGCTGAAGAATTATGTTTTTC 59.250 33.333 0.00 0.00 0.00 2.29
2504 2540 3.572255 GGCACAGGAAAGTATTTTGGTCA 59.428 43.478 0.00 0.00 39.27 4.02
2521 2557 0.534203 GACCTTCAACTTCGGGCACA 60.534 55.000 0.00 0.00 0.00 4.57
2527 2563 5.696724 ACAACTTCTATGACCTTCAACTTCG 59.303 40.000 0.00 0.00 0.00 3.79
2538 2574 5.306532 TCCTCGTACACAACTTCTATGAC 57.693 43.478 0.00 0.00 0.00 3.06
2555 2591 0.390860 GGTGATCATGGTCCTCCTCG 59.609 60.000 2.86 0.00 34.23 4.63
2590 2626 1.224592 CTCCTCCCAATTCCCCACG 59.775 63.158 0.00 0.00 0.00 4.94
2646 2682 6.935167 ACCCATGATGAAAGTTTTAATCCAC 58.065 36.000 0.00 0.00 28.56 4.02
2668 2704 8.453948 GAGGATCATGACGGAGTTACCATACC 62.454 50.000 0.00 0.00 35.87 2.73
2680 2716 1.482621 CGCAACGAGGATCATGACGG 61.483 60.000 0.00 0.00 33.17 4.79
2683 2719 0.179111 GGACGCAACGAGGATCATGA 60.179 55.000 0.00 0.00 33.17 3.07
2698 2734 6.753107 ATAAACAAAGAATAACCCTGGACG 57.247 37.500 0.00 0.00 0.00 4.79
2702 2738 9.020731 AGTACCAATAAACAAAGAATAACCCTG 57.979 33.333 0.00 0.00 0.00 4.45
2754 2790 3.791353 GTCAACAACTTTTCTTTCGCCTG 59.209 43.478 0.00 0.00 0.00 4.85
2756 2792 3.765026 TGTCAACAACTTTTCTTTCGCC 58.235 40.909 0.00 0.00 0.00 5.54
2757 2793 4.207019 CCATGTCAACAACTTTTCTTTCGC 59.793 41.667 0.00 0.00 0.00 4.70
2758 2794 5.339990 ACCATGTCAACAACTTTTCTTTCG 58.660 37.500 0.00 0.00 0.00 3.46
2760 2796 8.311109 AGTTTACCATGTCAACAACTTTTCTTT 58.689 29.630 0.00 0.00 0.00 2.52
2761 2797 7.836842 AGTTTACCATGTCAACAACTTTTCTT 58.163 30.769 0.00 0.00 0.00 2.52
2763 2799 7.973944 AGAAGTTTACCATGTCAACAACTTTTC 59.026 33.333 0.00 0.00 35.19 2.29
2803 2841 1.406539 CCCCATTTGATGTGCTGTAGC 59.593 52.381 0.00 0.00 42.50 3.58
2816 2854 1.978617 CACCTTCTGCGCCCCATTT 60.979 57.895 4.18 0.00 0.00 2.32
2853 2891 4.924305 TTGGTAGTACATAAGCGGGTAG 57.076 45.455 2.06 0.00 0.00 3.18
2903 2945 7.395190 AAAGCATCAACATTATAACAGAGCA 57.605 32.000 0.00 0.00 0.00 4.26
2918 2960 5.172934 GCATCTTCCATTGAAAAGCATCAA 58.827 37.500 2.66 2.66 43.03 2.57
2929 2971 0.452987 CACCACCGCATCTTCCATTG 59.547 55.000 0.00 0.00 0.00 2.82
2933 2975 0.468226 TATCCACCACCGCATCTTCC 59.532 55.000 0.00 0.00 0.00 3.46
2988 3058 8.186821 TCGGCTTTAGTTGAGTACTATAGTTTC 58.813 37.037 11.40 10.00 39.33 2.78
3003 3073 2.344025 GGACATCGTTCGGCTTTAGTT 58.656 47.619 0.00 0.00 0.00 2.24
3017 3087 1.981254 CACAAATTGTGCCGGACATC 58.019 50.000 13.51 0.00 41.89 3.06
3023 3093 9.735275 AAGACTTGTTCTACACAAATTGTGCCG 62.735 40.741 24.32 15.68 45.11 5.69
3066 3136 6.416455 TGCATACACATTTCGTTTCAAGAAAC 59.584 34.615 14.13 14.13 45.25 2.78
3070 3140 7.909641 TGATATGCATACACATTTCGTTTCAAG 59.090 33.333 8.99 0.00 32.56 3.02
3072 3142 7.148340 TGTGATATGCATACACATTTCGTTTCA 60.148 33.333 25.27 13.20 39.17 2.69
3077 3147 6.529463 TCTGTGATATGCATACACATTTCG 57.471 37.500 27.32 20.32 42.30 3.46
3130 3201 8.340618 AGAGTGCAAATTACATTCTTGTGTAT 57.659 30.769 0.00 0.00 36.53 2.29
3144 3215 8.671921 CATCACATTCTAACTAGAGTGCAAATT 58.328 33.333 8.67 0.00 41.93 1.82
3176 3247 1.070134 ACTAGCTCACGCCACTCAAAA 59.930 47.619 0.00 0.00 36.60 2.44
3178 3249 0.038251 CACTAGCTCACGCCACTCAA 60.038 55.000 0.00 0.00 36.60 3.02
3179 3250 0.893727 TCACTAGCTCACGCCACTCA 60.894 55.000 0.00 0.00 36.60 3.41
3186 3257 4.733850 TGTTTGATAGTCACTAGCTCACG 58.266 43.478 0.99 0.00 0.00 4.35
3201 3272 6.819284 ACATCATTCCACAGTTTTGTTTGAT 58.181 32.000 0.00 0.00 34.62 2.57
3237 3308 8.424731 CCTTAATTTCGTTTGCTGATACAAAAC 58.575 33.333 0.00 0.00 40.99 2.43
3263 3335 7.201893 GGGACGGAGGGAGTATATGATAATAAC 60.202 44.444 0.00 0.00 0.00 1.89
3265 3337 6.068676 TGGGACGGAGGGAGTATATGATAATA 60.069 42.308 0.00 0.00 0.00 0.98
3266 3338 5.209659 GGGACGGAGGGAGTATATGATAAT 58.790 45.833 0.00 0.00 0.00 1.28
3267 3339 4.044952 TGGGACGGAGGGAGTATATGATAA 59.955 45.833 0.00 0.00 0.00 1.75
3323 3404 8.218488 ACTCCCTCTGTCCCATAATATAAAAAC 58.782 37.037 0.00 0.00 0.00 2.43
3335 3416 4.408921 CACAATTATACTCCCTCTGTCCCA 59.591 45.833 0.00 0.00 0.00 4.37
3336 3417 4.743955 GCACAATTATACTCCCTCTGTCCC 60.744 50.000 0.00 0.00 0.00 4.46
3341 3422 2.224305 GCCGCACAATTATACTCCCTCT 60.224 50.000 0.00 0.00 0.00 3.69
3356 3440 2.313172 CGCTATCATCCAGCCGCAC 61.313 63.158 0.00 0.00 35.53 5.34
3361 3445 5.255710 AGTATATGTCGCTATCATCCAGC 57.744 43.478 0.00 0.00 35.61 4.85
3366 3450 5.899120 ACCGAAGTATATGTCGCTATCAT 57.101 39.130 3.22 0.00 35.93 2.45
3367 3451 5.472478 AGAACCGAAGTATATGTCGCTATCA 59.528 40.000 3.22 0.00 35.93 2.15
3368 3452 5.795939 CAGAACCGAAGTATATGTCGCTATC 59.204 44.000 3.22 2.12 35.93 2.08
3380 3464 1.414919 ACAACAGGCAGAACCGAAGTA 59.585 47.619 0.00 0.00 46.52 2.24
3390 3474 6.682423 TGTGAATGATATAACAACAGGCAG 57.318 37.500 0.00 0.00 0.00 4.85
3409 3493 7.823310 TGTAGTTAACTGGTAAGTTGTTTGTGA 59.177 33.333 18.56 0.00 46.30 3.58
3418 3502 7.069877 TGGTTGATGTAGTTAACTGGTAAGT 57.930 36.000 18.56 0.00 38.71 2.24
3436 3520 1.943968 GCGACATGGTAAGCTGGTTGA 60.944 52.381 1.72 0.00 0.00 3.18
3439 3523 1.447838 CGCGACATGGTAAGCTGGT 60.448 57.895 0.00 0.00 0.00 4.00
3442 3526 2.511600 GCCGCGACATGGTAAGCT 60.512 61.111 8.23 0.00 0.00 3.74
3447 3531 1.871039 GTTAATATGCCGCGACATGGT 59.129 47.619 18.71 7.95 0.00 3.55
3470 3554 8.049117 ACCAGAATAGATTGTTTGCAGATTAGA 58.951 33.333 0.00 0.00 0.00 2.10
3473 3557 6.660521 TCACCAGAATAGATTGTTTGCAGATT 59.339 34.615 0.00 0.00 0.00 2.40
3516 3601 7.094677 ACCCTTTGTACGTGGATTGTTTTATAC 60.095 37.037 0.00 0.00 0.00 1.47
3518 3603 5.771165 ACCCTTTGTACGTGGATTGTTTTAT 59.229 36.000 0.00 0.00 0.00 1.40
3540 3625 8.437742 CAAATTTCATTTGCAAGTAGATCAACC 58.562 33.333 0.00 0.00 42.57 3.77
3557 3642 7.781056 ACACACTTTCCTACAACAAATTTCAT 58.219 30.769 0.00 0.00 0.00 2.57
3568 3653 4.188462 CACTGACAACACACTTTCCTACA 58.812 43.478 0.00 0.00 0.00 2.74
3573 3658 5.457140 TCAAAACACTGACAACACACTTTC 58.543 37.500 0.00 0.00 0.00 2.62
3577 3662 4.154195 AGTCTCAAAACACTGACAACACAC 59.846 41.667 0.00 0.00 32.41 3.82
3587 3672 2.939103 GCACTGTCAGTCTCAAAACACT 59.061 45.455 1.37 0.00 0.00 3.55
3593 3678 1.756538 TCACAGCACTGTCAGTCTCAA 59.243 47.619 1.37 0.00 42.83 3.02
3600 3685 1.341209 CTACCACTCACAGCACTGTCA 59.659 52.381 0.00 0.00 42.83 3.58
3602 3687 0.034059 GCTACCACTCACAGCACTGT 59.966 55.000 0.00 0.00 46.17 3.55
3604 3689 0.319728 CTGCTACCACTCACAGCACT 59.680 55.000 0.00 0.00 40.26 4.40
3608 3693 2.146342 CAAACCTGCTACCACTCACAG 58.854 52.381 0.00 0.00 0.00 3.66
3610 3695 2.256117 ACAAACCTGCTACCACTCAC 57.744 50.000 0.00 0.00 0.00 3.51
3615 3700 2.092103 ACCTTGAACAAACCTGCTACCA 60.092 45.455 0.00 0.00 0.00 3.25
3616 3701 2.293399 CACCTTGAACAAACCTGCTACC 59.707 50.000 0.00 0.00 0.00 3.18
3617 3702 2.293399 CCACCTTGAACAAACCTGCTAC 59.707 50.000 0.00 0.00 0.00 3.58
3618 3703 2.092103 ACCACCTTGAACAAACCTGCTA 60.092 45.455 0.00 0.00 0.00 3.49
3619 3704 1.341976 ACCACCTTGAACAAACCTGCT 60.342 47.619 0.00 0.00 0.00 4.24
3620 3705 1.111277 ACCACCTTGAACAAACCTGC 58.889 50.000 0.00 0.00 0.00 4.85
3621 3706 2.293399 GCTACCACCTTGAACAAACCTG 59.707 50.000 0.00 0.00 0.00 4.00
3622 3707 2.583143 GCTACCACCTTGAACAAACCT 58.417 47.619 0.00 0.00 0.00 3.50
3623 3708 1.265905 CGCTACCACCTTGAACAAACC 59.734 52.381 0.00 0.00 0.00 3.27
3624 3709 1.334689 GCGCTACCACCTTGAACAAAC 60.335 52.381 0.00 0.00 0.00 2.93
3625 3710 0.948678 GCGCTACCACCTTGAACAAA 59.051 50.000 0.00 0.00 0.00 2.83
3626 3711 0.179043 TGCGCTACCACCTTGAACAA 60.179 50.000 9.73 0.00 0.00 2.83
3627 3712 0.882927 GTGCGCTACCACCTTGAACA 60.883 55.000 9.73 0.00 0.00 3.18
3628 3713 1.866925 GTGCGCTACCACCTTGAAC 59.133 57.895 9.73 0.00 0.00 3.18
3629 3714 1.666553 CGTGCGCTACCACCTTGAA 60.667 57.895 9.73 0.00 32.10 2.69
3630 3715 2.048597 CGTGCGCTACCACCTTGA 60.049 61.111 9.73 0.00 32.10 3.02
3631 3716 2.357034 ACGTGCGCTACCACCTTG 60.357 61.111 9.73 0.00 32.10 3.61
3632 3717 2.357034 CACGTGCGCTACCACCTT 60.357 61.111 9.73 0.00 32.10 3.50
3635 3720 3.118454 ATGCACGTGCGCTACCAC 61.118 61.111 33.22 7.31 45.83 4.16
3636 3721 3.117812 CATGCACGTGCGCTACCA 61.118 61.111 33.22 16.96 45.83 3.25
3637 3722 2.813474 TCATGCACGTGCGCTACC 60.813 61.111 33.22 8.83 45.83 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.