>input_sequence_46058
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---------------------------------------------------ATGTCGCCAGAGCCAGCGGCGAAGCGTGC
GAGCTCAGGCGGCGGCCACGCCGTCGCCTTCGCGGGCGACCGTCTAAGCGACCTGCCGGACGGCCTCCTCCACGCCGTCA
TGTCCTTTCTCCCGGCCCCGCAGGTCGTGCGGACGAGCGTGCTGTCGCGGCGGTGGAGGGACCTCTGGCGCTCTACCCCC
TGCATAAGCATCGAAGAGCGCGACTTCGAGATTACCACTGGGAGCGGGGCAGGGGGTGACCTCGACGAGCGGCAGGAGAG
ATGGCGCAAGTTCGAGGACTTCACCACCAACCTGCTCTTGTTCCACAACAATGTCGCGTCCTTGGATAAGTTCCGGCTAT
ATGCTGGTACTGGTCGTGCCTGTGCACTTCGCCTTCGGGACTTGGATAGATGGGTGCGACGTGGTATCAAATACCGCCCC
CAAGTGATCGAGATTATTATCTCTTTGCGTCCTCGCATTCAGTTTCCTCATATGGGAGCAAGTTCTTGCCGCCTTAAAAG
GTTGCATCTTAATGGTTTCTATCTGGACAACCAATTCGCAGAGCTACTCTGTTTCGGGTGCCCTGTCCTGGAAGATTTGG
TGCTCAGGAGCTGCGACAATGGTTTTCAAGAAATTAAGTCAAGCACATTGAAGAAGCTAGTCGTCGACTCCTGTGGCAAT
CTCTCTGGTGATCCGGTGGTTATCGTGGCACCCCATGTTGCATATCTCCAACTGGGTATTTCATATGGATGCTATTCCAA
CGGTGTTTCAATATATGAGACGGCTTCTCTTGTCAAAGCATCGATTCATTTGCTTTGTCTTGGTGAAGCATTCAATTTGA
AACATCAACAACGGCTTCTCGGTAACCTGTGCAATGTGCCAAATCTGCAGCTATCGGGTTTCCACGCAATGGTATGCCTT
GCTAGACATGTTTCTTGTGTTTACTCATTTATGTTGCAAGTAAAAATTCCCATGTGTTCCTAACAGATTATCTGTTCATC
TTGCACACGAGTGACCAATTGAATTGACCGTTAAATAAGGTTCATTATTTACTTTTGATATCCATATAGATTTGTTTCAT
GTGAGGAATGTTTTGACAATTATGGCATACAATACTATGCATCAGTAAAAGGATGGATCTTTG-----------------
-------AGGAATATTTTGAGAATTGAGTGATGCTTAAATTCAGTTTTGTTTTGTATATATTCCAGGCGATGCTCGTTGA
GGAATCGATTAAATTCCCAATCTTTGCTAACCTGCAAACCTTGTCACTTGAACAATGTTTGCTTGATAAATGTGAACTCG
ATACCAAGCTGGACGCTTTAGGGAGCTTTGTTCAGAATGCTCCTTGTTTGGAGAAGCTTACCTTGCAGTGCTGCATGGTA
ATTAACCTTTTTGTGTTTCCTGGTCTATCTCATGTTTTGTTTAGCTTCTAACATGAATCTTGTGGTCCTGTCAAAAGTTT
CCAGTAGAATCGGAGAAAGAGGGGCAGCTCGTGAGGAAAAACATAATTCTTCAGCGACATGACCAAAATACTTTCCTGTG
CCCGAAGTTGAAGGTCATAGAAGTTGTGTACGAGGAGGACCATGATCACCAACTGGTCGAACTTTCGTGGGGAATTGGGA
GGAGGCTACCAAATGCCAATATCGTACTCAACAATTATTTTGTGGATTAA------------------------------
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>chr2B_1_TraesCS2B01G325900
CGCTCACATACACTCACCCATATAAACGCATGCACACACATCCTATCGCTATGAGCACCTTTAAGAGACTGAGCTGATAT
AATATCTTGAAAATCTACGAAGTTACCATAGGCGTCTCGCAGTCGACGGGAATGTCTCCTCCCACTGAACGAACATCACA
GGAAGGCCGAAATAAATTCAGGAATAATGTGAGCACCAATCTATAACTTGAACCCTGGTGGGCTGGGATACCACTCTCCT
CCTAATCATCTAATCATAGGTTGGTCCGCCAAAAAGATTTATTTAAACAATAAGAACCAAATAAATTAAAATGCTTTTTA
GGGAAAAATAAATTAAAATAATT---GAAAAGAAAAAAAATAAGAAAAGAAAAACAAAAAGAGAACTCACATGGGCCGGC
CCAGGTAGTTGGTCTCTAGGCGTCACTCTCGTATTACCCGCTAGGGGC------CATTCCCCAAACCCTCCCCCACCATC
CCCTCAAGCGCCACCGGCCGCCGCCA--ACCCGATCGCCGTCCACGCTTGGACGGATGTGGTGGCGAGCTACTCCTCAGG
GCATGTACAATGCATAGCCTTAAGGTGATGCCTCGCATGCCACGTAGGTTCGGATATGACGTAAAGTAGGTTCGGATAGG
GAAACGGGATCCTCTCCAGGAGGCAGGTGCTTGAACAGAAAAAGTGTGGTCCGAAGACAAAAACTGAAAAGGTTGAAGTG
AAAAATAGAGATGCATGTGTACTAAAGTCTTTATTTTCTATTTTTTAATGAGGCCCACTAATGATAGCTTGCATTGGAAA
GAAAAAATAAATGTAAGTGTCTCAAATTACTTTTTGTCATAGGGCATATGTATCCATATGCCACTATTGTACGTGCCCTC
CTACGGGCCTCCTCGGAGATTTCTCGGCTTAGTGATCCCGGGGCAGCTGACTCGCGTGGCTATGGGGGTTCCAGAGCGTA
AGAATAATCAAGAGCAGATCTGATTGGGTAGGTGCTGCACAGGAAGAGGAGATGTCGCCAGAGCCAGCGGCGAAGCGTGC
GAGCTCAGGCGGCGGCCACGCCGTCGCCTTCGCGGGCGACCGTCTAAGCGACCTGCCGGACGGCCTCCTCCACGCCGTCA
TGTCCTTTCTCCCGGCCCCGCAGGTCGTGCGGACGAGCGTGCTGTCGCGGCGGTGGAGGGACCTCTGGCGCTCTACCCCC
TGCATAAGCATCGAAGAGCGCGACTTCGAGATTACCACTGGGAGCGGGGCAGGGGGTGACCTCGACGAGCGGCAGGAGAG
ATGGCGCAAGTTCGAGGACTTCACCACCAACCTGCTCTTGTTCCACAACAATGTCGCGTCCTTGGATAAGTTCCGGCTAT
ATGCTGGTACTGGTCGTGCCTGTGCACTTCGCCTTCGGGACTTGGATAGATGGGTGCGACGTGGTATCAAATACCGCCCC
CAAGTGATCGAGATTATTATCTCTTTGCGTCCTCGCATTCAGTTTCCTCATATGGGAGCAAGTTCTTGCCGCCTTAAAAG
GTTGCATCTTAATGGTTTCTATCTGGACAACCAATTCGCAGAGCTACTCTGTTTCGGGTGCCCTGTCCTGGAAGATTTGG
TGCTCAGGAGCTGCGACAATGGTTTTCAAGAAATTAAGTCAAGCACATTGAAGAAGCTAGTCGTCGACTCCTGTGGCAAT
CTCTCTGGTGATCCGGTGGTTATCGTGGCACCCCATGTTGCATATCTCCAACTGGGTATTTCATATGGATGCTATTCCAA
CGGTGTTTCAATATATGAGACGGCTTCTCTTGTCAAAGCATCGATTCATTTGCTTTGTCTTGGTGAAGCATTCAATTTGA
AACATCAACAACGGCTTCTCGGTAACCTGTGCAATGTGCCAAATCTGCAGCTATCGGGTTTCCACGCAATGGTATGCCTT
GCTAGACATGTTTCTTGTGTTTACTCATTTATGTTGCAAGTAAAAATTCCCATGTGTTCCTAACAGATTATCTGTTCATC
TTGCACACGAGTGACCAATTGAATTGACCGTTAAATAAGGTTCATTATTTACTTTTGATATCCATATAGATTTGTTTCAT
GTGAGGAATGTTTTGACAATTATGGCATACAATACTATGCATCAGTAAAAGGATGGATCTTTG-----------------
-------AGGAATATTTTGAGAATTGAGTGATGCTTAAATTCAGTTTTGTTTTGTATATATTCCAGGCGATGCTCGTTGA
GGAATCGATTAAATTCCCAATCTTTGCTAACCTGCAAACCTTGTCACTTGAACAATGTTTGCTTGATAAATGTGAACTCG
ATACCAAGCTGGACGCTTTAGGGAGCTTTGTTCAGAATGCTCCTTGTTTGGAGAAGCTTACCTTGCAGTGCTGCATGGTA
ATTAACCTTTTTGTGTTTCCTGGTCTATCTCATGTTTTGTTTAGCTTCTAACATGAATCTTGTGGTCCTGTCAAAAGTTT
CCAGTAGAATCGGAGAAAGAGGGGCAGCTCGTGAGGAAAAACATAATTCTTCAGCGACATGACCAAAATACTTTCCTGTG
CCCGAAGTTGAAGGTCATAGAAGTTGTGTACGAGGAGGACCATGATCACCAACTGGTCGAACTTTCGTGGGGAATTGGGA
GGAGGCTACCAAATGCCAATATCGTACTCAACAATTATTTTGTGGATTAAAACTTTCATCATGGGTATGGTAACTCCGTC
ATGATCCTCGTTGCGTCCAGGGTTATTCTTTGTTTATTGGTACTTAATTTGCTAGTACTGGTACTTCAACAGGCGAAAG-
-AAAAGTTGTTGACATGGTAAACTTCTGTATAATATTCTCGCTACAGCACATCAAATGGGGCGCAGAAGGTGAATTATGT
ATTCACTTTGCTACCCGCTTATGTACTACCAAATATG----TAGTATGTTTATGCATAATCTGATGCTCTGTTATAATGT
TGATGCTTTTCAATGGAAGATGCGGTGGTGGATAAAGCTAACC----------------------------AAAAGTTGG
CGCAAAGTGTCCCTATGGAAACTATAGTACTCAACTAAAGCCGAACGATGTCCGGCACAATTTGTGTAGAACAAGTCTTA
GTTTTGTGGTTTTTTGTTTCTTGAAACGAAATGTGTATGCATATCACAGATGCATAATTTCCAAACAGAAT-ATGCTGAT
ATACACAAGAATGTAATTTGCACTCTAGTTAGAATGTGATGGCGAGTTTTGAGTGGCGTGAGCTAGTGACTATCAAACAA
AACTGTGGAATGATGTAACTAGGTTATG-TTTTGTATCAGCAAACGAAATTAAGGTTATTATCATATACTCCCTCCGTCC
CATAATATAAGAACGTTTTTG---------TAGTGTCAAAAACGTTTTTATATTATGGGACAGAGGGAGT---ATAATTG
TGCGGCTGGATGATAGCGACATATACTTCGGTTCTGCCTGTTGTTATATCATTCACAAACAACTTACCAGTTAACTACAT
CAACCAGCTTACCATGTCGCGGCATATTAACTGTCTAATCTGCAAACAATC-TATTCTGGTGATCCTAACTTTCTTTCGT
GTATAAAACAATCCACGTACAAAGGGTTGATCTACTTGCAAATGAAATTTGTTGTAGGAAAGTGTGTTGTCAGTGTTTTG
AGACTGACAGTGCTGTGAGTGGTAGCAGGTTTGTTCAAGGTGGTAGCGCACGTGCATGA
>chr2D_3
--CTCACATACACTCACCC-TATGAACGCATGCACACACACCTTACCCCTATGAGCACCTTCGAGAGACTGAGTCGGCAT
AACATCTTGAAAATCTATGAAGTCACGACAGACGTCTTGCAGTCGACGGAAAGGTCTCCTCCTGCTGAACGAACATCGCG
GGAAGGTTGAAATAAATTCAGGAATAATGCGAGCATCAATGTCAAATTTATAACTT--TGGGCTGGGATACCGTTGTCCT
CCTTATCATCCAACCATAGGTTGGTCCATCAAAAAGTGTTTTTTTTACAATAAGAACCAAATAAATTAAAATGTTTTTTA
GGGAAG--TAAATTAAAATAACTAAAGAAAGAAAACAAAATAAGAAAACAAAAACAAAAAGAGAACCCACATGGGCCAGC
CCAGGTAGTTGGTTTCTAGCTCG--CTCTCGTATTACCCGCTAGGGGCATTCGCCATTCCCCAAACCCTCCCCCACCATC
ATCTCAAGCGCCACCGGTCGCCGGCACGACCCGATCGCCGTCCGCGCTTGAACGGATGTGGTGGCAAGCTACTCCTCATA
C-------------------------------------------------------------------------------
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-----GGCCTCCTCGGAGATTTCTCGGCTTAGTGAGCCCGGGGCAGCGGACTCGCGTGGCTATGGGTGTCCCAGAGCGTA
AGAATAATCAAGAGCAGATCTGATTGGGTAGGTGCTGCACAGGAAGAGGAGATGTCGCCAGAGCCAGCGGCGAAGCGTGC
GAGCTCAGGCGGCGGCCAAGCCGTCGCCTTCGCGGGCGACCGTCTAAGCAACCTGCCGGACGGCCTCCTCCACGCCGTCA
TGTCCTTTCTCCCGGCCCCGCAGGTCGTGCGGACGAGCGTGCTGTCGCGGCGGTGGAGGGACCTCTGGCGCTCTACCCCC
TGCATAAGCATCGAAGAGCGCGACTTCGAGATTACCACTGGGAGTGGGGCAGGGGGTGGCCTCGACGAGCGGGAGGAGAG
ATGGCGCAAGTTCGAGGACTTTACCACCAACCTGCTCTTGTTCCACGACAATGTCGCGTCCTTGGATAAGTTCCTGCTAT
ATGCTAGTGCTACTCGTGCCTGTGCACTTCGCCTCCGAGACTTGGATAGATGGGTGCGACGTGGTATCAAATACTGCCCC
CAAGTGATAGAGATTATTATCTCTTCGTGTCCTCGCATTCAGTTTCCTCATATGGGAGCGAGTTCTTCCCGCCTCAAAAG
CTTGCATCTTTATGGTTTCTATCTGAACAACCAATTCGCCGAGCTGCTCTGTTCCGGGTGCCCTGTCCTGGAAGATTTGG
TGCTCAGGAGCTGCGTCAAAGGTTTTCAAGAAATTAAGTCACGCACATTGAAGAAGCTTGTTGTCGACTCCTGTCGCAGT
CTCTCTGGTGATCCGGTGGTTATCGTGGCACCCCGTGTTGCGTATCTCCAACTGGGTATTTCATATGGATGCTATTCCAA
CGGTATTTCGATATATGAGACAGCTTCTCTTGTGAAAGCATCAATTCATTTGCTTTGTCTTGGTGAAACATTCAATTTGA
AATGTCAACAACGGCTTCTCGGTAACCTGTGCAATGTGCCGAATCTGGAGCTATCGGGTTTCGACGCAATGGTATGCCTT
GCTAGACATG-TTCTTGTGTTTACTCATTTATGTTGCAAGTAAAGATTCCCATGTGTTCCTAACAGATTACCTGTTCATC
TTGCACATGAGTAATCAATTGAATTGACCGTTAAATAAGGTTCGTTATTTACTTTTCATATCCATATAGATTTGATTCAT
GTGAGGAATATTTTGACAATTATGGCATACAATACTATACATCAGTAAAAGGACGAATCATTCGCTGTTAATTTGATTCT
TAATGTCAGGAATATTTTGACAATTGAGTGATGCTTAAATTCAGTTTTGTTTTGTATATATTCCAGGCGATGCTCGTTGA
GGAATCGGTTAAATTCCCAATATTTTCTAACCTGCAAACCTTGTCACTTGAACAATGTTTGCTTGATAAATGTGAACTCA
ACACCAAGCTGGAC----------GCTTTGTTCAAAATGCCCCTTGTTTGGAGAAGCTTACCTTGCAGTGCTGCATGGTA
ATTAACCTTTTTATGTTTACTGGCCTGTCTTATGATTTGTTTAGCTTCTGACATGAATCTTGTGGTCCTGTCAAAAGTTT
CCAGTAGAATCAGCGAAAGAGGGGCAGCTCGTGAGAAAAAACATAATTCTTCAGCGACAGGACCAAAATACTTTCCAGTG
CCTGAAGTTGAAGCTCATAGAAGTTGTGTATGAGGAGGACCATGATCACCAACTGGTCGAACTTTTGTGGGGAATTGGGA
GGAGGCTACCAAATGCCAATATCATACTCAACAATTATTTTATGGATTAAAACTTTCATCATGCGTATGGTAACTTCGCC
ATGATCCTCGTTGTGTCAAGGGTTATTCTTTGTTTATTGGTACTTAATTTGCTAGTACTGGTACTTCAAAACAGGTGAAA
TAAAAGTTGTTGACATGGTAAACTTCTGTATAATATTCTCACTACAGCACATCGAATGGGGCATAGAAGTTGAATTATGT
ATTCACTTTGTTACCCGCTTTTGGACTGCCAAATATGTTGCTAGTATGTTTATGCATAATCTGACGCTCTGTTATAATGC
TGATGCTTTTGAATTGAAGATGCGGTGGTGGATAAAGCTAATCAATTGTTAGCGCATTCTTATTTTTCTGGAAAAGTTGG
CGCTAAGTGTCCCTATGCAAACTATAGTACTCTACTAAAACCGAACAATATCTGGCACAATTTGTGTAGAACAAGTCTTG
GTTTTGTGTTTTTTTTTTTTTGGAAA-GAAATGTGTATGCATATCACAGATGCATAATTTCCAAACAAAATGATGCTGAT
TTACACAAGAATGTCATTTGCACTCTAGTTAGAATGTGATGGCGAGGTAAGAGTGGAGTGAGCTAGTGACTGTCAAACAA
AACTGTGGAATGATGTAACTAGGTTATTTTTTTGTATCAGCAAACGAAATTAAGATCTGTATCATATACTCCCTCCGTCC
CATAATATAAAAGCATTTCGGACACTACACTAGTGTCAGAAACATTTTTATATTACAGGACGGAGGGAGTAGTATAATTA
TGCGCCTGG---ATAGCGACATACACTTCGGTTATGCATGTCGTTATATCATGCACAAACAGCTTACCAGTTAACTACAG
CAGCCGGCTTGCCATGTCGCGGCATATTAACTGCCTTATCTGCAAACAATCCTATTCTGGTGATCCTAACTTTATTTCGT
TTGTAAAACAATCCACGTACAAAGTGTTGATATACTTGCAAGTGAAATTTGTGGTAGCAAAATGTGTTGTCGGTGTTCTG
AGACCGGCGGTGTTCTGAG----------------------------------------
>SNPs
SS-----------------S---S----------------S-S--S-S-------------SS----------SS-SS--
--S--------------S-----S--S-S--S-----S-----------S--S---------SS-------------S-S
------SS---------------------S-----S----S-SS--S--SS-S-S-SS--------------SS-S----
---S------S--S-------------SS-------SS--S---SS---------------------------S------
-----SSS-------------S--------SS---S------------S-----------------S----------S--
-------------S-----SSSSSS-------------------------------------------------------
SS---------------S-----S-------------------S------S--------------S------------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS------------------------------S-----------S------------------S--S----------
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------------------S------------------------------S------------------------------
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--------------------------------------------S-------------S-------------S-------
---------------------S------------------------S---------------------------S-----
-----S--S--SS---------------------S--S------------------------------------S-----
--------S----------------S-S-------------------------------S-------S------S-----
S---------S--------------S-------------S-----S-------S--------------------------
---------------S---S---------------------S----------------S--S------------S---S-
----------------------------------S------S--------------------------------------
----S----S-----------S-----------S--------S------------------------S------------
--SS------------------------------------S------S--------------S-----------------
----------S---------------------------------S-------------------------S---------
-------S----S-S----------------------------S------------S-----------------S-----
---------S----------------------------S--------------S-S---S--S-----------------
--------------------S-----------------------------------------------------------
-------S-------------S---S-----------------------------------------------------S
-S------------SSSSSSSSSS----------S-----S---------------------------------------
------------S-----S----S--S---S---S--------------S------------------------------
-----------S-S---------------------S-----------------------S----------------S---
--S----------S----------------S----------------------------------S--------------
-----------------------S-----------------S---------------------S-----------S--S-
-------------S---S---------------------------------------------------S-SSS-SS-S-
----------------------------------------S------------S--------SS-----S----------
----------S---------S--S---S------------------------------------S--------------S
----------S---S--------------------------S--------------------------------------
---S-------------S--------------S------S------S--S--S--------------------------S
--------S------S---S-S----S----------------------------------------S------------
S-------------S-------------------------------S-SS------S--------------S--------
---------------------------S--------------------------S-SSS---------------------
----------S-S-S---SS------------------S----S-----------SS----S-----------------S
----S----SSS-----------S---------S---S---S----------S--------S-----------------S
--S--S----S----------------------S--S------------------------------------S------
S-S---------------------S------S---------S----------S----S---S---------S-----S--
----S-S-S---S-S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_398
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----------------------------------------------------------AAGAGAACTCACATGGGCCG--
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>reverse_1844
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---ATCAACAACGGCTTCTCGGT---------------------------------------------------------
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>forward_1675
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-------------------------------------------------------GCTAGTCGTCGACTCCTGTG-----
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>reverse_3687
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------ACAGTGCTGTGAGTGGTAGC---------------------------------
