Multiple sequence alignment - TraesCS2B01G322200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G322200 chr2B 100.000 2882 0 0 1 2882 460552662 460549781 0.000000e+00 5323.0
1 TraesCS2B01G322200 chr2D 93.061 2205 94 29 115 2281 388482903 388480720 0.000000e+00 3169.0
2 TraesCS2B01G322200 chr2D 94.333 300 15 2 2278 2575 177287583 177287284 2.620000e-125 459.0
3 TraesCS2B01G322200 chr2D 95.595 227 6 3 2659 2882 388480564 388480339 7.590000e-96 361.0
4 TraesCS2B01G322200 chr2D 98.000 50 1 0 2609 2658 388480644 388480595 1.420000e-13 87.9
5 TraesCS2B01G322200 chr2A 93.870 1566 55 13 747 2281 524953563 524952008 0.000000e+00 2322.0
6 TraesCS2B01G322200 chr2A 95.085 468 21 1 109 574 524954264 524953797 0.000000e+00 736.0
7 TraesCS2B01G322200 chr2A 88.150 346 16 5 2559 2882 524952016 524951674 3.480000e-104 388.0
8 TraesCS2B01G322200 chr7B 96.167 287 10 1 2281 2566 705437549 705437835 4.350000e-128 468.0
9 TraesCS2B01G322200 chr7D 94.333 300 15 2 2278 2575 281029991 281029692 2.620000e-125 459.0
10 TraesCS2B01G322200 chr3D 94.333 300 15 2 2278 2575 246553641 246553342 2.620000e-125 459.0
11 TraesCS2B01G322200 chr1A 94.333 300 15 2 2278 2575 116528886 116528587 2.620000e-125 459.0
12 TraesCS2B01G322200 chr1D 94.000 300 16 2 2278 2575 56922269 56921970 1.220000e-123 453.0
13 TraesCS2B01G322200 chr1D 94.000 300 16 2 2278 2575 173622341 173622640 1.220000e-123 453.0
14 TraesCS2B01G322200 chr1D 94.000 300 16 2 2278 2575 267554339 267554638 1.220000e-123 453.0
15 TraesCS2B01G322200 chr1B 92.903 310 16 4 2267 2574 443786607 443786912 2.040000e-121 446.0
16 TraesCS2B01G322200 chr5A 88.235 68 5 2 21 85 600075612 600075545 8.560000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G322200 chr2B 460549781 460552662 2881 True 5323.000000 5323 100.000000 1 2882 1 chr2B.!!$R1 2881
1 TraesCS2B01G322200 chr2D 388480339 388482903 2564 True 1205.966667 3169 95.552000 115 2882 3 chr2D.!!$R2 2767
2 TraesCS2B01G322200 chr2A 524951674 524954264 2590 True 1148.666667 2322 92.368333 109 2882 3 chr2A.!!$R1 2773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.169672 GCCGCGTCTGTACTGTCTTA 59.83 55.0 4.92 0.0 0.0 2.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1969 2110 0.790814 GTCGTTTACACCAGCTGCTC 59.209 55.0 8.66 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.003173 CTGGCCCAGTCTCCCGAA 61.003 66.667 1.39 0.00 0.00 4.30
19 20 2.285368 TGGCCCAGTCTCCCGAAT 60.285 61.111 0.00 0.00 0.00 3.34
20 21 2.190578 GGCCCAGTCTCCCGAATG 59.809 66.667 0.00 0.00 35.13 2.67
21 22 2.670148 GGCCCAGTCTCCCGAATGT 61.670 63.158 0.00 0.00 33.59 2.71
22 23 1.450312 GCCCAGTCTCCCGAATGTG 60.450 63.158 0.00 0.00 33.59 3.21
23 24 1.450312 CCCAGTCTCCCGAATGTGC 60.450 63.158 0.00 0.00 33.59 4.57
24 25 1.599047 CCAGTCTCCCGAATGTGCT 59.401 57.895 0.00 0.00 33.59 4.40
25 26 0.460987 CCAGTCTCCCGAATGTGCTC 60.461 60.000 0.00 0.00 33.59 4.26
26 27 0.247460 CAGTCTCCCGAATGTGCTCA 59.753 55.000 0.00 0.00 30.98 4.26
27 28 1.134580 CAGTCTCCCGAATGTGCTCAT 60.135 52.381 0.00 0.00 35.59 2.90
28 29 2.101415 CAGTCTCCCGAATGTGCTCATA 59.899 50.000 0.93 0.00 33.49 2.15
29 30 2.363680 AGTCTCCCGAATGTGCTCATAG 59.636 50.000 0.93 0.00 33.49 2.23
30 31 1.688735 TCTCCCGAATGTGCTCATAGG 59.311 52.381 13.29 13.29 33.49 2.57
31 32 0.758734 TCCCGAATGTGCTCATAGGG 59.241 55.000 24.94 24.94 45.33 3.53
32 33 0.469917 CCCGAATGTGCTCATAGGGT 59.530 55.000 23.60 2.98 42.22 4.34
33 34 1.134098 CCCGAATGTGCTCATAGGGTT 60.134 52.381 23.60 3.37 42.22 4.11
34 35 2.104111 CCCGAATGTGCTCATAGGGTTA 59.896 50.000 23.60 0.00 42.22 2.85
35 36 3.244561 CCCGAATGTGCTCATAGGGTTAT 60.245 47.826 23.60 1.43 42.22 1.89
36 37 4.020573 CCCGAATGTGCTCATAGGGTTATA 60.021 45.833 23.60 0.00 42.22 0.98
37 38 5.171476 CCGAATGTGCTCATAGGGTTATAG 58.829 45.833 12.70 0.00 33.49 1.31
38 39 5.279506 CCGAATGTGCTCATAGGGTTATAGT 60.280 44.000 12.70 0.00 33.49 2.12
39 40 5.635280 CGAATGTGCTCATAGGGTTATAGTG 59.365 44.000 0.93 0.00 33.49 2.74
40 41 6.500589 AATGTGCTCATAGGGTTATAGTGT 57.499 37.500 0.93 0.00 33.49 3.55
41 42 5.276461 TGTGCTCATAGGGTTATAGTGTG 57.724 43.478 0.00 0.00 0.00 3.82
42 43 4.058817 GTGCTCATAGGGTTATAGTGTGC 58.941 47.826 0.00 0.00 0.00 4.57
43 44 3.243737 TGCTCATAGGGTTATAGTGTGCG 60.244 47.826 0.00 0.00 33.43 5.34
44 45 3.243771 GCTCATAGGGTTATAGTGTGCGT 60.244 47.826 0.00 0.00 0.00 5.24
45 46 4.299155 CTCATAGGGTTATAGTGTGCGTG 58.701 47.826 0.00 0.00 0.00 5.34
46 47 3.702548 TCATAGGGTTATAGTGTGCGTGT 59.297 43.478 0.00 0.00 0.00 4.49
47 48 2.380084 AGGGTTATAGTGTGCGTGTG 57.620 50.000 0.00 0.00 0.00 3.82
48 49 1.621814 AGGGTTATAGTGTGCGTGTGT 59.378 47.619 0.00 0.00 0.00 3.72
49 50 2.827322 AGGGTTATAGTGTGCGTGTGTA 59.173 45.455 0.00 0.00 0.00 2.90
50 51 3.449737 AGGGTTATAGTGTGCGTGTGTAT 59.550 43.478 0.00 0.00 0.00 2.29
51 52 4.081309 AGGGTTATAGTGTGCGTGTGTATT 60.081 41.667 0.00 0.00 0.00 1.89
52 53 4.269363 GGGTTATAGTGTGCGTGTGTATTC 59.731 45.833 0.00 0.00 0.00 1.75
53 54 4.865925 GGTTATAGTGTGCGTGTGTATTCA 59.134 41.667 0.00 0.00 0.00 2.57
54 55 5.522460 GGTTATAGTGTGCGTGTGTATTCAT 59.478 40.000 0.00 0.00 0.00 2.57
55 56 6.292168 GGTTATAGTGTGCGTGTGTATTCATC 60.292 42.308 0.00 0.00 0.00 2.92
56 57 1.992667 AGTGTGCGTGTGTATTCATCG 59.007 47.619 0.00 0.00 0.00 3.84
57 58 1.060553 GTGTGCGTGTGTATTCATCGG 59.939 52.381 0.00 0.00 0.00 4.18
58 59 1.067495 TGTGCGTGTGTATTCATCGGA 60.067 47.619 0.00 0.00 0.00 4.55
59 60 2.201732 GTGCGTGTGTATTCATCGGAT 58.798 47.619 0.00 0.00 31.19 4.18
60 61 2.033747 GTGCGTGTGTATTCATCGGATG 60.034 50.000 11.79 11.79 31.19 3.51
61 62 2.159170 TGCGTGTGTATTCATCGGATGA 60.159 45.455 16.44 16.44 37.55 2.92
62 63 2.472861 GCGTGTGTATTCATCGGATGAG 59.527 50.000 19.15 7.79 40.94 2.90
63 64 3.706698 CGTGTGTATTCATCGGATGAGT 58.293 45.455 19.15 18.69 40.94 3.41
64 65 3.487207 CGTGTGTATTCATCGGATGAGTG 59.513 47.826 21.91 4.54 40.94 3.51
65 66 4.433615 GTGTGTATTCATCGGATGAGTGT 58.566 43.478 21.91 14.23 40.94 3.55
66 67 5.588240 GTGTGTATTCATCGGATGAGTGTA 58.412 41.667 21.91 13.41 40.94 2.90
67 68 6.216569 GTGTGTATTCATCGGATGAGTGTAT 58.783 40.000 21.91 14.68 40.94 2.29
68 69 6.144563 GTGTGTATTCATCGGATGAGTGTATG 59.855 42.308 21.91 0.00 40.94 2.39
69 70 6.183360 TGTGTATTCATCGGATGAGTGTATGT 60.183 38.462 21.91 7.51 40.94 2.29
70 71 6.144563 GTGTATTCATCGGATGAGTGTATGTG 59.855 42.308 21.91 0.00 40.94 3.21
71 72 3.097877 TCATCGGATGAGTGTATGTGC 57.902 47.619 16.44 0.00 33.59 4.57
72 73 1.788886 CATCGGATGAGTGTATGTGCG 59.211 52.381 12.67 0.00 0.00 5.34
73 74 0.815095 TCGGATGAGTGTATGTGCGT 59.185 50.000 0.00 0.00 0.00 5.24
74 75 1.203758 TCGGATGAGTGTATGTGCGTT 59.796 47.619 0.00 0.00 0.00 4.84
75 76 1.999735 CGGATGAGTGTATGTGCGTTT 59.000 47.619 0.00 0.00 0.00 3.60
76 77 2.222796 CGGATGAGTGTATGTGCGTTTG 60.223 50.000 0.00 0.00 0.00 2.93
77 78 2.742053 GGATGAGTGTATGTGCGTTTGT 59.258 45.455 0.00 0.00 0.00 2.83
78 79 3.930229 GGATGAGTGTATGTGCGTTTGTA 59.070 43.478 0.00 0.00 0.00 2.41
79 80 4.570772 GGATGAGTGTATGTGCGTTTGTAT 59.429 41.667 0.00 0.00 0.00 2.29
80 81 4.919677 TGAGTGTATGTGCGTTTGTATG 57.080 40.909 0.00 0.00 0.00 2.39
81 82 4.561105 TGAGTGTATGTGCGTTTGTATGA 58.439 39.130 0.00 0.00 0.00 2.15
82 83 4.625311 TGAGTGTATGTGCGTTTGTATGAG 59.375 41.667 0.00 0.00 0.00 2.90
83 84 3.370978 AGTGTATGTGCGTTTGTATGAGC 59.629 43.478 0.00 0.00 0.00 4.26
84 85 2.347150 TGTATGTGCGTTTGTATGAGCG 59.653 45.455 0.00 0.00 0.00 5.03
87 88 2.021380 GCGTTTGTATGAGCGCCG 59.979 61.111 2.29 0.00 43.52 6.46
88 89 2.021380 CGTTTGTATGAGCGCCGC 59.979 61.111 2.29 0.00 0.00 6.53
89 90 2.021380 GTTTGTATGAGCGCCGCG 59.979 61.111 8.83 8.83 0.00 6.46
90 91 2.433491 TTTGTATGAGCGCCGCGT 60.433 55.556 15.34 0.00 0.00 6.01
91 92 2.449525 TTTGTATGAGCGCCGCGTC 61.450 57.895 15.34 11.03 0.00 5.19
92 93 2.829043 TTTGTATGAGCGCCGCGTCT 62.829 55.000 15.34 11.85 0.00 4.18
93 94 3.323136 GTATGAGCGCCGCGTCTG 61.323 66.667 15.34 0.00 0.00 3.51
94 95 3.822192 TATGAGCGCCGCGTCTGT 61.822 61.111 15.34 5.93 0.00 3.41
95 96 2.474612 TATGAGCGCCGCGTCTGTA 61.475 57.895 15.34 4.31 0.00 2.74
96 97 2.657484 TATGAGCGCCGCGTCTGTAC 62.657 60.000 15.34 0.00 0.00 2.90
97 98 4.477975 GAGCGCCGCGTCTGTACT 62.478 66.667 15.34 0.91 0.00 2.73
98 99 4.778415 AGCGCCGCGTCTGTACTG 62.778 66.667 15.34 0.00 0.00 2.74
100 101 2.874780 CGCCGCGTCTGTACTGTC 60.875 66.667 4.92 0.00 0.00 3.51
101 102 2.567049 GCCGCGTCTGTACTGTCT 59.433 61.111 4.92 0.00 0.00 3.41
102 103 1.080705 GCCGCGTCTGTACTGTCTT 60.081 57.895 4.92 0.00 0.00 3.01
103 104 0.169672 GCCGCGTCTGTACTGTCTTA 59.830 55.000 4.92 0.00 0.00 2.10
104 105 1.401931 GCCGCGTCTGTACTGTCTTAA 60.402 52.381 4.92 0.00 0.00 1.85
105 106 2.923605 GCCGCGTCTGTACTGTCTTAAA 60.924 50.000 4.92 0.00 0.00 1.52
106 107 3.311106 CCGCGTCTGTACTGTCTTAAAA 58.689 45.455 4.92 0.00 0.00 1.52
107 108 3.737266 CCGCGTCTGTACTGTCTTAAAAA 59.263 43.478 4.92 0.00 0.00 1.94
161 162 0.320421 ACATTTGAGTCCCGTGACGG 60.320 55.000 18.71 18.71 46.51 4.79
204 205 8.895845 CGTGTAATTAAATCAGCTGCAAATATC 58.104 33.333 9.47 3.96 0.00 1.63
207 208 9.107367 GTAATTAAATCAGCTGCAAATATCGTC 57.893 33.333 9.47 0.00 0.00 4.20
225 226 4.926244 TCGTCATCTAATTGACAGAGAGC 58.074 43.478 5.54 0.00 45.08 4.09
232 236 2.486472 ATTGACAGAGAGCACCAAGG 57.514 50.000 0.00 0.00 0.00 3.61
267 273 1.304381 GGCAACAGGATTGGGCAGA 60.304 57.895 0.00 0.00 32.38 4.26
272 278 2.564062 CAACAGGATTGGGCAGACAAAT 59.436 45.455 0.00 0.00 33.48 2.32
456 462 0.601841 CCCGAGCGGTTACTGTTGTT 60.602 55.000 8.25 0.00 0.00 2.83
513 519 3.121406 TTGCCGCTGTTACCACCCA 62.121 57.895 0.00 0.00 0.00 4.51
604 610 1.068083 GATCTCGCCGCCTCATCAA 59.932 57.895 0.00 0.00 0.00 2.57
606 612 1.680522 ATCTCGCCGCCTCATCAACT 61.681 55.000 0.00 0.00 0.00 3.16
608 614 0.596083 CTCGCCGCCTCATCAACTAG 60.596 60.000 0.00 0.00 0.00 2.57
611 617 1.000163 CGCCGCCTCATCAACTAGTAT 60.000 52.381 0.00 0.00 0.00 2.12
644 748 6.758416 CAGCATAGCAGATCAGTTTTACTGTA 59.242 38.462 6.71 0.00 46.03 2.74
645 749 7.440556 CAGCATAGCAGATCAGTTTTACTGTAT 59.559 37.037 6.71 0.41 46.03 2.29
682 793 1.138859 ACTGTGTGTACTGCTGCTTCA 59.861 47.619 0.00 0.00 0.00 3.02
687 798 1.536766 GTGTACTGCTGCTTCATTGCA 59.463 47.619 0.00 0.00 41.05 4.08
688 799 1.536766 TGTACTGCTGCTTCATTGCAC 59.463 47.619 0.00 0.00 38.12 4.57
689 800 1.808945 GTACTGCTGCTTCATTGCACT 59.191 47.619 0.00 0.00 38.12 4.40
690 801 2.189594 ACTGCTGCTTCATTGCACTA 57.810 45.000 0.00 0.00 38.12 2.74
691 802 1.808945 ACTGCTGCTTCATTGCACTAC 59.191 47.619 0.00 0.00 38.12 2.73
692 803 1.131883 CTGCTGCTTCATTGCACTACC 59.868 52.381 0.00 0.00 38.12 3.18
693 804 1.271543 TGCTGCTTCATTGCACTACCT 60.272 47.619 0.00 0.00 38.12 3.08
694 805 2.027285 TGCTGCTTCATTGCACTACCTA 60.027 45.455 0.00 0.00 38.12 3.08
695 806 3.209410 GCTGCTTCATTGCACTACCTAT 58.791 45.455 0.00 0.00 38.12 2.57
696 807 4.141733 TGCTGCTTCATTGCACTACCTATA 60.142 41.667 0.00 0.00 38.12 1.31
697 808 4.450419 GCTGCTTCATTGCACTACCTATAG 59.550 45.833 0.00 0.00 38.12 1.31
698 809 5.605534 CTGCTTCATTGCACTACCTATAGT 58.394 41.667 0.00 0.00 42.74 2.12
699 810 5.601662 TGCTTCATTGCACTACCTATAGTC 58.398 41.667 0.00 0.00 39.80 2.59
700 811 5.128663 TGCTTCATTGCACTACCTATAGTCA 59.871 40.000 0.00 0.00 39.80 3.41
701 812 5.463724 GCTTCATTGCACTACCTATAGTCAC 59.536 44.000 0.00 0.00 39.80 3.67
702 813 6.684111 GCTTCATTGCACTACCTATAGTCACT 60.684 42.308 0.00 0.00 39.80 3.41
709 820 8.255111 TGCACTACCTATAGTCACTAGTAGTA 57.745 38.462 12.69 3.71 39.80 1.82
712 823 8.646004 CACTACCTATAGTCACTAGTAGTACCA 58.354 40.741 12.69 0.00 39.80 3.25
806 917 0.829990 TATGCTTCGCACCTGATGGA 59.170 50.000 0.00 0.00 43.04 3.41
813 924 1.522092 GCACCTGATGGATGACGGA 59.478 57.895 0.00 0.00 37.04 4.69
818 929 1.407936 CTGATGGATGACGGAGGTCT 58.592 55.000 0.00 0.00 43.79 3.85
854 965 1.074895 CCCTAGCTCCTCCCCTCCTA 61.075 65.000 0.00 0.00 0.00 2.94
927 1055 4.803426 CGAGCGAGAGTGGCCACC 62.803 72.222 32.29 22.52 0.00 4.61
1200 1335 4.988598 CACCGCAGCTTCCACCGT 62.989 66.667 0.00 0.00 0.00 4.83
1221 1356 3.391382 GCGGGTAGCCTCACTGGT 61.391 66.667 9.73 0.00 40.81 4.00
1257 1392 1.298014 CTTCTTCTTCAGCCCGCCT 59.702 57.895 0.00 0.00 0.00 5.52
1602 1737 1.361993 CTTCTGCCTCGAGATCGGG 59.638 63.158 15.71 0.00 40.09 5.14
1952 2093 8.633561 AGGGCTTTAGATTTAATTAATGCACTC 58.366 33.333 0.00 0.00 38.53 3.51
1965 2106 2.515926 TGCACTCTCAGTCAGTTGTC 57.484 50.000 0.00 0.00 0.00 3.18
1969 2110 1.000827 ACTCTCAGTCAGTTGTCAGCG 60.001 52.381 0.00 0.00 0.00 5.18
2143 2285 9.032624 TGTCTTGCTTTAATCCTAGTACTACTT 57.967 33.333 0.00 0.00 0.00 2.24
2144 2286 9.303537 GTCTTGCTTTAATCCTAGTACTACTTG 57.696 37.037 0.00 0.00 0.00 3.16
2145 2287 9.032624 TCTTGCTTTAATCCTAGTACTACTTGT 57.967 33.333 0.00 0.00 0.00 3.16
2165 2307 5.169992 TGTACTACTACCAGTGCTAGACA 57.830 43.478 0.00 0.00 32.89 3.41
2235 2383 5.843673 TTAATGCCGCATTAATTCTTCCA 57.156 34.783 27.31 9.42 40.13 3.53
2238 2386 3.023119 TGCCGCATTAATTCTTCCATGT 58.977 40.909 0.00 0.00 0.00 3.21
2253 2402 3.099141 TCCATGTCAGTAGAGTGCATCA 58.901 45.455 0.00 0.00 0.00 3.07
2257 2406 3.369175 TGTCAGTAGAGTGCATCAGGAT 58.631 45.455 0.00 0.00 0.00 3.24
2281 2430 2.027745 TGTGCCTGGAAGCTTCTCTAAG 60.028 50.000 25.05 16.44 35.68 2.18
2282 2431 2.234908 GTGCCTGGAAGCTTCTCTAAGA 59.765 50.000 25.05 3.76 34.37 2.10
2283 2432 2.499289 TGCCTGGAAGCTTCTCTAAGAG 59.501 50.000 25.05 11.42 34.37 2.85
2284 2433 2.741553 GCCTGGAAGCTTCTCTAAGAGC 60.742 54.545 25.05 16.73 34.37 4.09
2285 2434 2.499289 CCTGGAAGCTTCTCTAAGAGCA 59.501 50.000 25.05 11.32 34.37 4.26
2286 2435 3.134442 CCTGGAAGCTTCTCTAAGAGCAT 59.866 47.826 25.05 0.00 34.37 3.79
2288 2437 3.118482 TGGAAGCTTCTCTAAGAGCATGG 60.118 47.826 25.05 0.00 34.37 3.66
2290 2439 4.512484 GAAGCTTCTCTAAGAGCATGGTT 58.488 43.478 19.44 0.00 34.37 3.67
2291 2440 5.395768 GGAAGCTTCTCTAAGAGCATGGTTA 60.396 44.000 25.05 0.00 34.37 2.85
2293 2442 6.245890 AGCTTCTCTAAGAGCATGGTTAAT 57.754 37.500 0.00 0.00 34.37 1.40
2294 2443 7.366847 AGCTTCTCTAAGAGCATGGTTAATA 57.633 36.000 0.00 0.00 34.37 0.98
2295 2444 7.441017 AGCTTCTCTAAGAGCATGGTTAATAG 58.559 38.462 0.00 2.79 34.37 1.73
2296 2445 7.070571 AGCTTCTCTAAGAGCATGGTTAATAGT 59.929 37.037 0.00 0.00 34.37 2.12
2297 2446 8.361139 GCTTCTCTAAGAGCATGGTTAATAGTA 58.639 37.037 0.00 0.00 34.37 1.82
2301 2450 9.796120 CTCTAAGAGCATGGTTAATAGTATAGC 57.204 37.037 0.00 0.00 0.00 2.97
2302 2451 8.750298 TCTAAGAGCATGGTTAATAGTATAGCC 58.250 37.037 0.00 0.00 0.00 3.93
2303 2452 6.935240 AGAGCATGGTTAATAGTATAGCCA 57.065 37.500 0.00 3.65 39.96 4.75
2304 2453 6.940739 AGAGCATGGTTAATAGTATAGCCAG 58.059 40.000 0.00 2.11 39.18 4.85
2305 2454 5.491982 AGCATGGTTAATAGTATAGCCAGC 58.508 41.667 0.00 8.73 39.18 4.85
2306 2455 4.330074 GCATGGTTAATAGTATAGCCAGCG 59.670 45.833 0.00 0.00 39.18 5.18
2307 2456 4.530710 TGGTTAATAGTATAGCCAGCGG 57.469 45.455 0.00 0.00 32.02 5.52
2330 2479 1.972872 GCTATAAGCCAGTGCCATGT 58.027 50.000 0.00 0.00 38.69 3.21
2331 2480 1.876156 GCTATAAGCCAGTGCCATGTC 59.124 52.381 0.00 0.00 38.69 3.06
2332 2481 2.746142 GCTATAAGCCAGTGCCATGTCA 60.746 50.000 0.00 0.00 38.69 3.58
2333 2482 2.742428 ATAAGCCAGTGCCATGTCAT 57.258 45.000 0.00 0.00 38.69 3.06
2334 2483 2.042686 TAAGCCAGTGCCATGTCATC 57.957 50.000 0.00 0.00 38.69 2.92
2335 2484 0.330604 AAGCCAGTGCCATGTCATCT 59.669 50.000 0.00 0.00 38.69 2.90
2336 2485 1.206878 AGCCAGTGCCATGTCATCTA 58.793 50.000 0.00 0.00 38.69 1.98
2337 2486 1.134280 AGCCAGTGCCATGTCATCTAC 60.134 52.381 0.00 0.00 38.69 2.59
2338 2487 1.407299 GCCAGTGCCATGTCATCTACA 60.407 52.381 0.00 0.00 43.86 2.74
2339 2488 2.940971 GCCAGTGCCATGTCATCTACAA 60.941 50.000 0.00 0.00 42.70 2.41
2340 2489 2.679837 CCAGTGCCATGTCATCTACAAC 59.320 50.000 0.00 0.00 42.70 3.32
2341 2490 2.679837 CAGTGCCATGTCATCTACAACC 59.320 50.000 0.00 0.00 42.70 3.77
2342 2491 2.017049 GTGCCATGTCATCTACAACCC 58.983 52.381 0.00 0.00 42.70 4.11
2343 2492 1.632920 TGCCATGTCATCTACAACCCA 59.367 47.619 0.00 0.00 42.70 4.51
2344 2493 2.241941 TGCCATGTCATCTACAACCCAT 59.758 45.455 0.00 0.00 42.70 4.00
2345 2494 2.880890 GCCATGTCATCTACAACCCATC 59.119 50.000 0.00 0.00 42.70 3.51
2346 2495 3.434167 GCCATGTCATCTACAACCCATCT 60.434 47.826 0.00 0.00 42.70 2.90
2347 2496 4.785301 CCATGTCATCTACAACCCATCTT 58.215 43.478 0.00 0.00 42.70 2.40
2348 2497 5.687441 GCCATGTCATCTACAACCCATCTTA 60.687 44.000 0.00 0.00 42.70 2.10
2349 2498 6.537355 CCATGTCATCTACAACCCATCTTAT 58.463 40.000 0.00 0.00 42.70 1.73
2350 2499 7.679783 CCATGTCATCTACAACCCATCTTATA 58.320 38.462 0.00 0.00 42.70 0.98
2351 2500 7.821359 CCATGTCATCTACAACCCATCTTATAG 59.179 40.741 0.00 0.00 42.70 1.31
2352 2501 6.759272 TGTCATCTACAACCCATCTTATAGC 58.241 40.000 0.00 0.00 34.29 2.97
2353 2502 6.554982 TGTCATCTACAACCCATCTTATAGCT 59.445 38.462 0.00 0.00 34.29 3.32
2354 2503 7.728532 TGTCATCTACAACCCATCTTATAGCTA 59.271 37.037 0.00 0.00 34.29 3.32
2355 2504 8.585881 GTCATCTACAACCCATCTTATAGCTAA 58.414 37.037 0.00 0.00 0.00 3.09
2356 2505 8.585881 TCATCTACAACCCATCTTATAGCTAAC 58.414 37.037 0.00 0.00 0.00 2.34
2357 2506 7.907841 TCTACAACCCATCTTATAGCTAACA 57.092 36.000 0.00 0.00 0.00 2.41
2358 2507 8.492415 TCTACAACCCATCTTATAGCTAACAT 57.508 34.615 0.00 0.00 0.00 2.71
2359 2508 8.367911 TCTACAACCCATCTTATAGCTAACATG 58.632 37.037 0.00 0.00 0.00 3.21
2360 2509 6.900194 ACAACCCATCTTATAGCTAACATGT 58.100 36.000 0.00 0.00 0.00 3.21
2361 2510 8.029782 ACAACCCATCTTATAGCTAACATGTA 57.970 34.615 0.00 0.00 0.00 2.29
2362 2511 7.931948 ACAACCCATCTTATAGCTAACATGTAC 59.068 37.037 0.00 0.00 0.00 2.90
2363 2512 7.612065 ACCCATCTTATAGCTAACATGTACA 57.388 36.000 0.00 0.00 0.00 2.90
2364 2513 8.029782 ACCCATCTTATAGCTAACATGTACAA 57.970 34.615 0.00 0.00 0.00 2.41
2365 2514 8.660435 ACCCATCTTATAGCTAACATGTACAAT 58.340 33.333 0.00 0.00 0.00 2.71
2412 2561 5.669164 TTTTATTATGTGGCCCACCTTTC 57.331 39.130 12.25 0.00 36.63 2.62
2413 2562 2.917713 ATTATGTGGCCCACCTTTCA 57.082 45.000 12.25 0.00 36.63 2.69
2414 2563 2.917713 TTATGTGGCCCACCTTTCAT 57.082 45.000 12.25 0.00 36.63 2.57
2415 2564 2.917713 TATGTGGCCCACCTTTCATT 57.082 45.000 12.25 0.00 36.63 2.57
2416 2565 1.560505 ATGTGGCCCACCTTTCATTC 58.439 50.000 12.25 0.00 36.63 2.67
2417 2566 0.482446 TGTGGCCCACCTTTCATTCT 59.518 50.000 12.25 0.00 36.63 2.40
2418 2567 1.177401 GTGGCCCACCTTTCATTCTC 58.823 55.000 1.17 0.00 36.63 2.87
2419 2568 0.776810 TGGCCCACCTTTCATTCTCA 59.223 50.000 0.00 0.00 36.63 3.27
2420 2569 1.177401 GGCCCACCTTTCATTCTCAC 58.823 55.000 0.00 0.00 0.00 3.51
2421 2570 1.547675 GGCCCACCTTTCATTCTCACA 60.548 52.381 0.00 0.00 0.00 3.58
2422 2571 2.238521 GCCCACCTTTCATTCTCACAA 58.761 47.619 0.00 0.00 0.00 3.33
2423 2572 2.627699 GCCCACCTTTCATTCTCACAAA 59.372 45.455 0.00 0.00 0.00 2.83
2424 2573 3.305608 GCCCACCTTTCATTCTCACAAAG 60.306 47.826 0.00 0.00 0.00 2.77
2425 2574 3.891366 CCCACCTTTCATTCTCACAAAGT 59.109 43.478 0.00 0.00 0.00 2.66
2426 2575 4.261741 CCCACCTTTCATTCTCACAAAGTG 60.262 45.833 0.00 0.00 34.45 3.16
2427 2576 4.293415 CACCTTTCATTCTCACAAAGTGC 58.707 43.478 0.00 0.00 32.98 4.40
2428 2577 3.319122 ACCTTTCATTCTCACAAAGTGCC 59.681 43.478 0.00 0.00 32.98 5.01
2429 2578 3.571401 CCTTTCATTCTCACAAAGTGCCT 59.429 43.478 0.00 0.00 32.98 4.75
2430 2579 4.761739 CCTTTCATTCTCACAAAGTGCCTA 59.238 41.667 0.00 0.00 32.98 3.93
2431 2580 5.106396 CCTTTCATTCTCACAAAGTGCCTAG 60.106 44.000 0.00 0.00 32.98 3.02
2432 2581 3.942829 TCATTCTCACAAAGTGCCTAGG 58.057 45.455 3.67 3.67 32.98 3.02
2433 2582 3.582647 TCATTCTCACAAAGTGCCTAGGA 59.417 43.478 14.75 0.00 32.98 2.94
2434 2583 3.685139 TTCTCACAAAGTGCCTAGGAG 57.315 47.619 14.75 0.00 32.98 3.69
2435 2584 1.276421 TCTCACAAAGTGCCTAGGAGC 59.724 52.381 14.75 3.68 32.98 4.70
2436 2585 1.002430 CTCACAAAGTGCCTAGGAGCA 59.998 52.381 14.75 0.22 41.46 4.26
2442 2591 3.466881 TGCCTAGGAGCACGTGTT 58.533 55.556 18.38 11.90 38.00 3.32
2443 2592 2.661054 TGCCTAGGAGCACGTGTTA 58.339 52.632 18.38 4.44 38.00 2.41
2444 2593 0.530744 TGCCTAGGAGCACGTGTTAG 59.469 55.000 18.38 13.08 38.00 2.34
2445 2594 0.815734 GCCTAGGAGCACGTGTTAGA 59.184 55.000 18.38 0.00 0.00 2.10
2446 2595 1.202313 GCCTAGGAGCACGTGTTAGAG 60.202 57.143 18.38 8.83 0.00 2.43
2447 2596 1.202313 CCTAGGAGCACGTGTTAGAGC 60.202 57.143 18.38 0.54 0.00 4.09
2448 2597 1.746220 CTAGGAGCACGTGTTAGAGCT 59.254 52.381 18.38 6.45 40.61 4.09
2449 2598 0.244994 AGGAGCACGTGTTAGAGCTG 59.755 55.000 18.38 0.00 38.14 4.24
2450 2599 0.038159 GGAGCACGTGTTAGAGCTGT 60.038 55.000 18.38 0.00 38.14 4.40
2451 2600 1.341606 GAGCACGTGTTAGAGCTGTC 58.658 55.000 18.38 0.00 38.14 3.51
2452 2601 0.962489 AGCACGTGTTAGAGCTGTCT 59.038 50.000 18.38 0.00 36.72 3.41
2453 2602 1.063806 GCACGTGTTAGAGCTGTCTG 58.936 55.000 18.38 0.00 33.84 3.51
2454 2603 1.603172 GCACGTGTTAGAGCTGTCTGT 60.603 52.381 18.38 0.00 33.84 3.41
2455 2604 2.743938 CACGTGTTAGAGCTGTCTGTT 58.256 47.619 7.58 0.00 33.84 3.16
2456 2605 2.726760 CACGTGTTAGAGCTGTCTGTTC 59.273 50.000 7.58 0.00 33.84 3.18
2457 2606 2.361119 ACGTGTTAGAGCTGTCTGTTCA 59.639 45.455 0.00 0.00 33.84 3.18
2458 2607 2.726760 CGTGTTAGAGCTGTCTGTTCAC 59.273 50.000 0.00 0.00 33.84 3.18
2459 2608 2.726760 GTGTTAGAGCTGTCTGTTCACG 59.273 50.000 0.00 0.00 33.84 4.35
2460 2609 2.621526 TGTTAGAGCTGTCTGTTCACGA 59.378 45.455 0.00 0.00 33.84 4.35
2461 2610 3.067601 TGTTAGAGCTGTCTGTTCACGAA 59.932 43.478 0.00 0.00 33.84 3.85
2462 2611 2.430546 AGAGCTGTCTGTTCACGAAG 57.569 50.000 0.00 0.00 0.00 3.79
2463 2612 1.957177 AGAGCTGTCTGTTCACGAAGA 59.043 47.619 0.00 0.00 0.00 2.87
2464 2613 2.030363 AGAGCTGTCTGTTCACGAAGAG 60.030 50.000 0.00 0.00 33.46 2.85
2465 2614 0.787183 GCTGTCTGTTCACGAAGAGC 59.213 55.000 0.00 0.00 32.36 4.09
2466 2615 1.423395 CTGTCTGTTCACGAAGAGCC 58.577 55.000 0.00 0.00 32.36 4.70
2467 2616 0.033504 TGTCTGTTCACGAAGAGCCC 59.966 55.000 0.00 0.00 32.36 5.19
2468 2617 1.009389 GTCTGTTCACGAAGAGCCCG 61.009 60.000 0.00 0.00 32.36 6.13
2469 2618 2.357034 TGTTCACGAAGAGCCCGC 60.357 61.111 0.00 0.00 0.00 6.13
2470 2619 2.048127 GTTCACGAAGAGCCCGCT 60.048 61.111 0.00 0.00 0.00 5.52
2471 2620 1.668151 GTTCACGAAGAGCCCGCTT 60.668 57.895 0.00 0.00 0.00 4.68
2472 2621 0.389426 GTTCACGAAGAGCCCGCTTA 60.389 55.000 0.00 0.00 0.00 3.09
2473 2622 0.389426 TTCACGAAGAGCCCGCTTAC 60.389 55.000 0.00 0.00 0.00 2.34
2474 2623 1.810030 CACGAAGAGCCCGCTTACC 60.810 63.158 0.00 0.00 0.00 2.85
2475 2624 1.982938 ACGAAGAGCCCGCTTACCT 60.983 57.895 0.00 0.00 0.00 3.08
2476 2625 1.218316 CGAAGAGCCCGCTTACCTT 59.782 57.895 0.00 0.00 0.00 3.50
2477 2626 0.806492 CGAAGAGCCCGCTTACCTTC 60.806 60.000 6.57 6.57 0.00 3.46
2478 2627 0.537653 GAAGAGCCCGCTTACCTTCT 59.462 55.000 8.59 0.00 32.72 2.85
2479 2628 0.537653 AAGAGCCCGCTTACCTTCTC 59.462 55.000 0.00 0.00 0.00 2.87
2480 2629 0.324830 AGAGCCCGCTTACCTTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
2481 2630 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
2482 2631 0.324830 AGCCCGCTTACCTTCTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
2483 2632 0.103390 GCCCGCTTACCTTCTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
2484 2633 0.747852 CCCGCTTACCTTCTCTCTCC 59.252 60.000 0.00 0.00 0.00 3.71
2485 2634 1.686741 CCCGCTTACCTTCTCTCTCCT 60.687 57.143 0.00 0.00 0.00 3.69
2486 2635 1.679153 CCGCTTACCTTCTCTCTCCTC 59.321 57.143 0.00 0.00 0.00 3.71
2487 2636 2.650322 CGCTTACCTTCTCTCTCCTCT 58.350 52.381 0.00 0.00 0.00 3.69
2488 2637 3.020984 CGCTTACCTTCTCTCTCCTCTT 58.979 50.000 0.00 0.00 0.00 2.85
2489 2638 3.066203 CGCTTACCTTCTCTCTCCTCTTC 59.934 52.174 0.00 0.00 0.00 2.87
2490 2639 4.278310 GCTTACCTTCTCTCTCCTCTTCT 58.722 47.826 0.00 0.00 0.00 2.85
2491 2640 4.338400 GCTTACCTTCTCTCTCCTCTTCTC 59.662 50.000 0.00 0.00 0.00 2.87
2492 2641 5.755849 CTTACCTTCTCTCTCCTCTTCTCT 58.244 45.833 0.00 0.00 0.00 3.10
2493 2642 4.675063 ACCTTCTCTCTCCTCTTCTCTT 57.325 45.455 0.00 0.00 0.00 2.85
2494 2643 5.010708 ACCTTCTCTCTCCTCTTCTCTTT 57.989 43.478 0.00 0.00 0.00 2.52
2495 2644 5.016831 ACCTTCTCTCTCCTCTTCTCTTTC 58.983 45.833 0.00 0.00 0.00 2.62
2496 2645 5.222337 ACCTTCTCTCTCCTCTTCTCTTTCT 60.222 44.000 0.00 0.00 0.00 2.52
2497 2646 5.716703 CCTTCTCTCTCCTCTTCTCTTTCTT 59.283 44.000 0.00 0.00 0.00 2.52
2498 2647 6.127619 CCTTCTCTCTCCTCTTCTCTTTCTTC 60.128 46.154 0.00 0.00 0.00 2.87
2499 2648 6.139679 TCTCTCTCCTCTTCTCTTTCTTCT 57.860 41.667 0.00 0.00 0.00 2.85
2500 2649 7.265599 TCTCTCTCCTCTTCTCTTTCTTCTA 57.734 40.000 0.00 0.00 0.00 2.10
2501 2650 7.695055 TCTCTCTCCTCTTCTCTTTCTTCTAA 58.305 38.462 0.00 0.00 0.00 2.10
2502 2651 7.610305 TCTCTCTCCTCTTCTCTTTCTTCTAAC 59.390 40.741 0.00 0.00 0.00 2.34
2503 2652 7.466804 TCTCTCCTCTTCTCTTTCTTCTAACT 58.533 38.462 0.00 0.00 0.00 2.24
2504 2653 8.607713 TCTCTCCTCTTCTCTTTCTTCTAACTA 58.392 37.037 0.00 0.00 0.00 2.24
2505 2654 9.238368 CTCTCCTCTTCTCTTTCTTCTAACTAA 57.762 37.037 0.00 0.00 0.00 2.24
2506 2655 9.238368 TCTCCTCTTCTCTTTCTTCTAACTAAG 57.762 37.037 0.00 0.00 0.00 2.18
2507 2656 7.832769 TCCTCTTCTCTTTCTTCTAACTAAGC 58.167 38.462 0.00 0.00 0.00 3.09
2508 2657 7.451877 TCCTCTTCTCTTTCTTCTAACTAAGCA 59.548 37.037 0.00 0.00 0.00 3.91
2509 2658 7.759433 CCTCTTCTCTTTCTTCTAACTAAGCAG 59.241 40.741 0.00 0.00 0.00 4.24
2510 2659 8.410673 TCTTCTCTTTCTTCTAACTAAGCAGA 57.589 34.615 0.00 0.00 0.00 4.26
2511 2660 8.861086 TCTTCTCTTTCTTCTAACTAAGCAGAA 58.139 33.333 0.00 0.00 35.93 3.02
2512 2661 9.482627 CTTCTCTTTCTTCTAACTAAGCAGAAA 57.517 33.333 1.08 1.08 42.73 2.52
2539 2688 8.999220 ATACTAGTTTATTTCTTATAGCCCGC 57.001 34.615 0.00 0.00 0.00 6.13
2540 2689 7.063934 ACTAGTTTATTTCTTATAGCCCGCT 57.936 36.000 0.00 0.00 0.00 5.52
2541 2690 6.929606 ACTAGTTTATTTCTTATAGCCCGCTG 59.070 38.462 0.00 0.00 0.00 5.18
2542 2691 5.925509 AGTTTATTTCTTATAGCCCGCTGA 58.074 37.500 0.00 0.00 0.00 4.26
2543 2692 5.758784 AGTTTATTTCTTATAGCCCGCTGAC 59.241 40.000 0.00 0.00 0.00 3.51
2544 2693 5.546621 TTATTTCTTATAGCCCGCTGACT 57.453 39.130 0.00 0.00 0.00 3.41
2545 2694 6.659745 TTATTTCTTATAGCCCGCTGACTA 57.340 37.500 0.00 0.00 0.00 2.59
2546 2695 5.546621 ATTTCTTATAGCCCGCTGACTAA 57.453 39.130 0.00 0.00 0.00 2.24
2547 2696 4.585955 TTCTTATAGCCCGCTGACTAAG 57.414 45.455 0.00 4.70 0.00 2.18
2562 2711 6.820470 CTGACTAAGCTCTATTGTACTTGC 57.180 41.667 0.00 0.00 0.00 4.01
2563 2712 6.531503 TGACTAAGCTCTATTGTACTTGCT 57.468 37.500 0.00 0.00 0.00 3.91
2564 2713 6.565234 TGACTAAGCTCTATTGTACTTGCTC 58.435 40.000 0.00 0.00 0.00 4.26
2565 2714 6.378564 TGACTAAGCTCTATTGTACTTGCTCT 59.621 38.462 0.00 0.00 0.00 4.09
2566 2715 7.556635 TGACTAAGCTCTATTGTACTTGCTCTA 59.443 37.037 0.00 0.00 0.00 2.43
2567 2716 8.294954 ACTAAGCTCTATTGTACTTGCTCTAA 57.705 34.615 0.00 0.00 0.00 2.10
2568 2717 8.750298 ACTAAGCTCTATTGTACTTGCTCTAAA 58.250 33.333 0.00 0.00 0.00 1.85
2569 2718 9.757227 CTAAGCTCTATTGTACTTGCTCTAAAT 57.243 33.333 0.00 0.00 0.00 1.40
2571 2720 8.430801 AGCTCTATTGTACTTGCTCTAAATTG 57.569 34.615 0.00 0.00 0.00 2.32
2572 2721 7.011857 AGCTCTATTGTACTTGCTCTAAATTGC 59.988 37.037 0.00 0.00 0.00 3.56
2573 2722 7.201644 GCTCTATTGTACTTGCTCTAAATTGCA 60.202 37.037 0.00 0.00 37.42 4.08
2574 2723 8.560355 TCTATTGTACTTGCTCTAAATTGCAA 57.440 30.769 0.00 0.00 45.40 4.08
2575 2724 9.177608 TCTATTGTACTTGCTCTAAATTGCAAT 57.822 29.630 5.99 5.99 46.20 3.56
2576 2725 9.229784 CTATTGTACTTGCTCTAAATTGCAATG 57.770 33.333 13.82 0.24 46.20 2.82
2577 2726 6.573664 TGTACTTGCTCTAAATTGCAATGT 57.426 33.333 13.82 10.46 46.20 2.71
2578 2727 6.380995 TGTACTTGCTCTAAATTGCAATGTG 58.619 36.000 13.82 6.48 46.20 3.21
2579 2728 5.458041 ACTTGCTCTAAATTGCAATGTGT 57.542 34.783 13.82 4.25 46.20 3.72
2580 2729 5.224888 ACTTGCTCTAAATTGCAATGTGTG 58.775 37.500 13.82 5.45 46.20 3.82
2581 2730 4.852134 TGCTCTAAATTGCAATGTGTGT 57.148 36.364 13.82 0.00 36.15 3.72
2584 2733 4.386652 GCTCTAAATTGCAATGTGTGTTGG 59.613 41.667 13.82 5.29 0.00 3.77
2596 2745 2.368875 TGTGTGTTGGTTTGGTTTGGTT 59.631 40.909 0.00 0.00 0.00 3.67
2598 2747 3.815962 GTGTGTTGGTTTGGTTTGGTTTT 59.184 39.130 0.00 0.00 0.00 2.43
2603 2752 2.299297 TGGTTTGGTTTGGTTTTGTCGT 59.701 40.909 0.00 0.00 0.00 4.34
2618 2767 0.782384 GTCGTACTCGTGTGGCTTTG 59.218 55.000 0.00 0.00 38.33 2.77
2791 3009 0.798776 CAAGCTTGGCGTTCTACTGG 59.201 55.000 19.14 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.370445 ATTCGGGAGACTGGGCCAG 61.370 63.158 31.62 31.62 39.59 4.85
2 3 2.285368 ATTCGGGAGACTGGGCCA 60.285 61.111 5.85 5.85 39.59 5.36
3 4 2.190578 CATTCGGGAGACTGGGCC 59.809 66.667 0.00 0.00 39.59 5.80
4 5 1.450312 CACATTCGGGAGACTGGGC 60.450 63.158 0.00 0.00 43.07 5.36
5 6 1.450312 GCACATTCGGGAGACTGGG 60.450 63.158 0.00 0.00 44.82 4.45
6 7 0.460987 GAGCACATTCGGGAGACTGG 60.461 60.000 0.00 0.00 43.07 4.00
7 8 0.247460 TGAGCACATTCGGGAGACTG 59.753 55.000 0.00 0.00 44.19 3.51
8 9 1.198713 ATGAGCACATTCGGGAGACT 58.801 50.000 0.00 0.00 39.59 3.24
9 10 2.546795 CCTATGAGCACATTCGGGAGAC 60.547 54.545 0.83 0.00 39.59 3.36
10 11 1.688735 CCTATGAGCACATTCGGGAGA 59.311 52.381 0.83 0.00 37.87 3.71
11 12 1.270518 CCCTATGAGCACATTCGGGAG 60.271 57.143 19.69 5.00 42.98 4.30
12 13 0.758734 CCCTATGAGCACATTCGGGA 59.241 55.000 19.69 0.00 42.98 5.14
13 14 0.469917 ACCCTATGAGCACATTCGGG 59.530 55.000 21.52 21.52 44.40 5.14
14 15 2.332063 AACCCTATGAGCACATTCGG 57.668 50.000 0.83 4.90 37.87 4.30
15 16 5.635280 CACTATAACCCTATGAGCACATTCG 59.365 44.000 0.83 0.00 37.87 3.34
16 17 6.425114 CACACTATAACCCTATGAGCACATTC 59.575 42.308 0.83 0.00 37.87 2.67
17 18 6.291377 CACACTATAACCCTATGAGCACATT 58.709 40.000 0.83 0.00 37.87 2.71
18 19 5.743130 GCACACTATAACCCTATGAGCACAT 60.743 44.000 1.31 1.31 40.16 3.21
19 20 4.442893 GCACACTATAACCCTATGAGCACA 60.443 45.833 0.00 0.00 0.00 4.57
20 21 4.058817 GCACACTATAACCCTATGAGCAC 58.941 47.826 0.00 0.00 0.00 4.40
21 22 3.243737 CGCACACTATAACCCTATGAGCA 60.244 47.826 0.00 0.00 0.00 4.26
22 23 3.243771 ACGCACACTATAACCCTATGAGC 60.244 47.826 0.00 0.00 0.00 4.26
23 24 4.202121 ACACGCACACTATAACCCTATGAG 60.202 45.833 0.00 0.00 0.00 2.90
24 25 3.702548 ACACGCACACTATAACCCTATGA 59.297 43.478 0.00 0.00 0.00 2.15
25 26 3.802139 CACACGCACACTATAACCCTATG 59.198 47.826 0.00 0.00 0.00 2.23
26 27 3.449737 ACACACGCACACTATAACCCTAT 59.550 43.478 0.00 0.00 0.00 2.57
27 28 2.827322 ACACACGCACACTATAACCCTA 59.173 45.455 0.00 0.00 0.00 3.53
28 29 1.621814 ACACACGCACACTATAACCCT 59.378 47.619 0.00 0.00 0.00 4.34
29 30 2.088950 ACACACGCACACTATAACCC 57.911 50.000 0.00 0.00 0.00 4.11
30 31 4.865925 TGAATACACACGCACACTATAACC 59.134 41.667 0.00 0.00 0.00 2.85
31 32 6.559703 CGATGAATACACACGCACACTATAAC 60.560 42.308 0.00 0.00 0.00 1.89
32 33 5.457473 CGATGAATACACACGCACACTATAA 59.543 40.000 0.00 0.00 0.00 0.98
33 34 4.973663 CGATGAATACACACGCACACTATA 59.026 41.667 0.00 0.00 0.00 1.31
34 35 3.796717 CGATGAATACACACGCACACTAT 59.203 43.478 0.00 0.00 0.00 2.12
35 36 3.175929 CGATGAATACACACGCACACTA 58.824 45.455 0.00 0.00 0.00 2.74
36 37 1.992667 CGATGAATACACACGCACACT 59.007 47.619 0.00 0.00 0.00 3.55
37 38 1.060553 CCGATGAATACACACGCACAC 59.939 52.381 0.00 0.00 0.00 3.82
38 39 1.067495 TCCGATGAATACACACGCACA 60.067 47.619 0.00 0.00 0.00 4.57
39 40 1.635844 TCCGATGAATACACACGCAC 58.364 50.000 0.00 0.00 0.00 5.34
40 41 2.159170 TCATCCGATGAATACACACGCA 60.159 45.455 8.70 0.00 36.11 5.24
41 42 2.469826 TCATCCGATGAATACACACGC 58.530 47.619 8.70 0.00 36.11 5.34
42 43 3.487207 CACTCATCCGATGAATACACACG 59.513 47.826 12.16 1.22 39.11 4.49
43 44 4.433615 ACACTCATCCGATGAATACACAC 58.566 43.478 12.16 0.00 39.11 3.82
44 45 4.736126 ACACTCATCCGATGAATACACA 57.264 40.909 12.16 0.00 39.11 3.72
45 46 6.144563 CACATACACTCATCCGATGAATACAC 59.855 42.308 12.16 0.00 39.11 2.90
46 47 6.215845 CACATACACTCATCCGATGAATACA 58.784 40.000 12.16 0.00 39.11 2.29
47 48 5.119279 GCACATACACTCATCCGATGAATAC 59.881 44.000 12.16 0.00 39.11 1.89
48 49 5.230182 GCACATACACTCATCCGATGAATA 58.770 41.667 12.16 5.97 39.11 1.75
49 50 4.060900 GCACATACACTCATCCGATGAAT 58.939 43.478 12.16 0.00 39.11 2.57
50 51 3.457234 GCACATACACTCATCCGATGAA 58.543 45.455 12.16 0.00 39.11 2.57
51 52 2.543653 CGCACATACACTCATCCGATGA 60.544 50.000 10.67 10.67 37.76 2.92
52 53 1.788886 CGCACATACACTCATCCGATG 59.211 52.381 1.55 1.55 0.00 3.84
53 54 1.409064 ACGCACATACACTCATCCGAT 59.591 47.619 0.00 0.00 0.00 4.18
54 55 0.815095 ACGCACATACACTCATCCGA 59.185 50.000 0.00 0.00 0.00 4.55
55 56 1.640428 AACGCACATACACTCATCCG 58.360 50.000 0.00 0.00 0.00 4.18
56 57 2.742053 ACAAACGCACATACACTCATCC 59.258 45.455 0.00 0.00 0.00 3.51
57 58 5.290885 TCATACAAACGCACATACACTCATC 59.709 40.000 0.00 0.00 0.00 2.92
58 59 5.175127 TCATACAAACGCACATACACTCAT 58.825 37.500 0.00 0.00 0.00 2.90
59 60 4.561105 TCATACAAACGCACATACACTCA 58.439 39.130 0.00 0.00 0.00 3.41
60 61 4.492570 GCTCATACAAACGCACATACACTC 60.493 45.833 0.00 0.00 0.00 3.51
61 62 3.370978 GCTCATACAAACGCACATACACT 59.629 43.478 0.00 0.00 0.00 3.55
62 63 3.670203 GCTCATACAAACGCACATACAC 58.330 45.455 0.00 0.00 0.00 2.90
63 64 2.347150 CGCTCATACAAACGCACATACA 59.653 45.455 0.00 0.00 0.00 2.29
64 65 2.956386 CGCTCATACAAACGCACATAC 58.044 47.619 0.00 0.00 0.00 2.39
71 72 2.021380 GCGGCGCTCATACAAACG 59.979 61.111 26.86 0.00 0.00 3.60
72 73 2.021380 CGCGGCGCTCATACAAAC 59.979 61.111 30.54 0.00 0.00 2.93
73 74 2.433491 ACGCGGCGCTCATACAAA 60.433 55.556 30.54 0.00 0.00 2.83
74 75 2.883730 GACGCGGCGCTCATACAA 60.884 61.111 30.54 0.00 0.00 2.41
75 76 3.822192 AGACGCGGCGCTCATACA 61.822 61.111 30.54 0.00 0.00 2.29
76 77 2.657484 TACAGACGCGGCGCTCATAC 62.657 60.000 30.54 15.24 0.00 2.39
77 78 2.474612 TACAGACGCGGCGCTCATA 61.475 57.895 30.54 17.54 0.00 2.15
78 79 3.822192 TACAGACGCGGCGCTCAT 61.822 61.111 30.54 15.31 0.00 2.90
79 80 4.771356 GTACAGACGCGGCGCTCA 62.771 66.667 30.54 7.90 0.00 4.26
80 81 4.477975 AGTACAGACGCGGCGCTC 62.478 66.667 30.54 23.96 0.00 5.03
81 82 4.778415 CAGTACAGACGCGGCGCT 62.778 66.667 30.54 17.31 0.00 5.92
83 84 2.797866 AAGACAGTACAGACGCGGCG 62.798 60.000 22.36 22.36 0.00 6.46
84 85 0.169672 TAAGACAGTACAGACGCGGC 59.830 55.000 12.47 7.86 0.00 6.53
85 86 2.624316 TTAAGACAGTACAGACGCGG 57.376 50.000 12.47 0.00 0.00 6.46
86 87 4.959631 TTTTTAAGACAGTACAGACGCG 57.040 40.909 3.53 3.53 0.00 6.01
105 106 4.100189 TCCAATTTCGGTGTCCATGTTTTT 59.900 37.500 0.00 0.00 0.00 1.94
106 107 3.639094 TCCAATTTCGGTGTCCATGTTTT 59.361 39.130 0.00 0.00 0.00 2.43
107 108 3.226777 TCCAATTTCGGTGTCCATGTTT 58.773 40.909 0.00 0.00 0.00 2.83
161 162 1.102978 ACGGCACAGAAAATATGGCC 58.897 50.000 0.00 0.00 35.59 5.36
207 208 4.763073 TGGTGCTCTCTGTCAATTAGATG 58.237 43.478 0.00 0.00 0.00 2.90
232 236 1.303282 CCAGGGGGTTAGCTCCAAC 59.697 63.158 2.20 0.00 36.82 3.77
259 265 1.890573 GCCCAGTATTTGTCTGCCCAA 60.891 52.381 0.00 0.00 0.00 4.12
260 266 0.323360 GCCCAGTATTTGTCTGCCCA 60.323 55.000 0.00 0.00 0.00 5.36
267 273 3.788227 TCTTCTGTGCCCAGTATTTGT 57.212 42.857 0.00 0.00 39.82 2.83
272 278 1.208052 GCTGATCTTCTGTGCCCAGTA 59.792 52.381 0.00 0.00 39.82 2.74
292 298 3.680842 GTGGGGTACGGCATCTTAG 57.319 57.895 0.00 0.00 0.00 2.18
456 462 1.134037 GGGCCGGATACCATTGTTACA 60.134 52.381 5.05 0.00 0.00 2.41
513 519 1.078637 TGAGACGGGACTCGACGAT 60.079 57.895 0.00 0.00 42.43 3.73
580 586 2.813908 GGCGGCGAGATCACGTTT 60.814 61.111 12.98 0.00 35.59 3.60
604 610 5.053145 GCTATGCTGCTTTGTGATACTAGT 58.947 41.667 0.00 0.00 0.00 2.57
606 612 5.022282 TGCTATGCTGCTTTGTGATACTA 57.978 39.130 0.00 0.00 0.00 1.82
608 614 3.873361 TCTGCTATGCTGCTTTGTGATAC 59.127 43.478 0.00 0.00 0.00 2.24
611 617 2.477845 TCTGCTATGCTGCTTTGTGA 57.522 45.000 0.00 0.00 0.00 3.58
682 793 8.219178 ACTACTAGTGACTATAGGTAGTGCAAT 58.781 37.037 17.26 0.00 41.19 3.56
687 798 8.789767 TGGTACTACTAGTGACTATAGGTAGT 57.210 38.462 20.08 20.08 43.76 2.73
738 849 5.774179 ACTTTGGCCCTCATACTACTAGTA 58.226 41.667 0.00 1.89 34.82 1.82
740 851 4.261656 CGACTTTGGCCCTCATACTACTAG 60.262 50.000 0.00 0.00 0.00 2.57
741 852 3.635373 CGACTTTGGCCCTCATACTACTA 59.365 47.826 0.00 0.00 0.00 1.82
742 853 2.431057 CGACTTTGGCCCTCATACTACT 59.569 50.000 0.00 0.00 0.00 2.57
743 854 2.167900 ACGACTTTGGCCCTCATACTAC 59.832 50.000 0.00 0.00 0.00 2.73
795 906 0.531532 CTCCGTCATCCATCAGGTGC 60.532 60.000 0.00 0.00 35.89 5.01
806 917 2.573869 CACGCAGACCTCCGTCAT 59.426 61.111 0.00 0.00 41.87 3.06
818 929 0.963355 GGGGGTTTTATCTGCACGCA 60.963 55.000 0.00 0.00 0.00 5.24
822 933 2.172717 GAGCTAGGGGGTTTTATCTGCA 59.827 50.000 0.00 0.00 0.00 4.41
1602 1737 1.737008 GAGGACGTTCCGCTTGACC 60.737 63.158 0.00 0.00 42.75 4.02
1680 1815 3.299977 CCCATGCCCATGCCGATG 61.300 66.667 2.75 0.00 37.49 3.84
1683 1818 4.608774 ATCCCCATGCCCATGCCG 62.609 66.667 2.75 0.00 37.49 5.69
1905 2046 2.739913 TGGCGATTAAAAGAACTCCGTG 59.260 45.455 0.00 0.00 0.00 4.94
1908 2049 2.683362 CCCTGGCGATTAAAAGAACTCC 59.317 50.000 0.00 0.00 0.00 3.85
1952 2093 1.695813 CTCGCTGACAACTGACTGAG 58.304 55.000 0.00 0.00 0.00 3.35
1969 2110 0.790814 GTCGTTTACACCAGCTGCTC 59.209 55.000 8.66 0.00 0.00 4.26
2143 2285 5.169992 TGTCTAGCACTGGTAGTAGTACA 57.830 43.478 13.68 8.68 35.44 2.90
2144 2286 5.647225 ACTTGTCTAGCACTGGTAGTAGTAC 59.353 44.000 13.68 0.00 35.44 2.73
2145 2287 5.646793 CACTTGTCTAGCACTGGTAGTAGTA 59.353 44.000 13.68 0.00 35.44 1.82
2146 2288 4.459685 CACTTGTCTAGCACTGGTAGTAGT 59.540 45.833 13.68 12.30 35.44 2.73
2147 2289 4.459685 ACACTTGTCTAGCACTGGTAGTAG 59.540 45.833 13.68 11.82 35.44 2.57
2148 2290 4.404640 ACACTTGTCTAGCACTGGTAGTA 58.595 43.478 13.68 3.77 35.44 1.82
2149 2291 3.231818 ACACTTGTCTAGCACTGGTAGT 58.768 45.455 13.68 0.00 35.44 2.73
2150 2292 3.944055 ACACTTGTCTAGCACTGGTAG 57.056 47.619 8.72 8.72 35.26 3.18
2151 2293 4.404640 ACTACACTTGTCTAGCACTGGTA 58.595 43.478 0.00 0.00 0.00 3.25
2165 2307 2.894126 ACTCACTGCAGCTACTACACTT 59.106 45.455 15.27 0.00 0.00 3.16
2230 2378 3.599730 TGCACTCTACTGACATGGAAG 57.400 47.619 0.00 0.00 0.00 3.46
2231 2379 3.515104 TGATGCACTCTACTGACATGGAA 59.485 43.478 0.00 0.00 0.00 3.53
2235 2383 3.369175 TCCTGATGCACTCTACTGACAT 58.631 45.455 0.00 0.00 0.00 3.06
2238 2386 5.181009 CAAAATCCTGATGCACTCTACTGA 58.819 41.667 0.00 0.00 0.00 3.41
2253 2402 1.203100 AGCTTCCAGGCACAAAATCCT 60.203 47.619 0.00 0.00 34.17 3.24
2257 2406 1.956477 GAGAAGCTTCCAGGCACAAAA 59.044 47.619 22.81 0.00 34.17 2.44
2281 2430 5.582665 GCTGGCTATACTATTAACCATGCTC 59.417 44.000 0.00 0.00 0.00 4.26
2282 2431 5.491982 GCTGGCTATACTATTAACCATGCT 58.508 41.667 0.00 0.00 0.00 3.79
2283 2432 4.330074 CGCTGGCTATACTATTAACCATGC 59.670 45.833 0.00 0.00 0.00 4.06
2284 2433 4.870426 CCGCTGGCTATACTATTAACCATG 59.130 45.833 0.00 0.00 0.00 3.66
2285 2434 4.623171 GCCGCTGGCTATACTATTAACCAT 60.623 45.833 11.61 0.00 46.69 3.55
2286 2435 3.306502 GCCGCTGGCTATACTATTAACCA 60.307 47.826 11.61 0.00 46.69 3.67
2311 2460 1.876156 GACATGGCACTGGCTTATAGC 59.124 52.381 3.97 0.00 41.46 2.97
2312 2461 3.198409 TGACATGGCACTGGCTTATAG 57.802 47.619 0.00 0.00 40.87 1.31
2313 2462 3.392285 AGATGACATGGCACTGGCTTATA 59.608 43.478 1.45 0.00 40.87 0.98
2314 2463 2.174210 AGATGACATGGCACTGGCTTAT 59.826 45.455 1.45 0.00 40.87 1.73
2315 2464 1.561076 AGATGACATGGCACTGGCTTA 59.439 47.619 1.45 0.00 40.87 3.09
2316 2465 0.330604 AGATGACATGGCACTGGCTT 59.669 50.000 1.45 0.00 40.87 4.35
2317 2466 1.134280 GTAGATGACATGGCACTGGCT 60.134 52.381 1.45 1.41 40.87 4.75
2318 2467 1.303309 GTAGATGACATGGCACTGGC 58.697 55.000 1.45 0.00 40.13 4.85
2319 2468 2.679837 GTTGTAGATGACATGGCACTGG 59.320 50.000 1.45 0.00 38.07 4.00
2320 2469 2.679837 GGTTGTAGATGACATGGCACTG 59.320 50.000 1.45 0.00 38.07 3.66
2321 2470 2.356125 GGGTTGTAGATGACATGGCACT 60.356 50.000 1.45 6.11 38.07 4.40
2322 2471 2.017049 GGGTTGTAGATGACATGGCAC 58.983 52.381 1.45 0.00 38.07 5.01
2323 2472 1.632920 TGGGTTGTAGATGACATGGCA 59.367 47.619 2.18 2.18 38.07 4.92
2324 2473 2.418368 TGGGTTGTAGATGACATGGC 57.582 50.000 0.00 0.00 38.07 4.40
2325 2474 4.428294 AGATGGGTTGTAGATGACATGG 57.572 45.455 0.00 0.00 38.07 3.66
2326 2475 7.332926 GCTATAAGATGGGTTGTAGATGACATG 59.667 40.741 0.00 0.00 38.07 3.21
2327 2476 7.236432 AGCTATAAGATGGGTTGTAGATGACAT 59.764 37.037 0.00 0.00 38.07 3.06
2328 2477 6.554982 AGCTATAAGATGGGTTGTAGATGACA 59.445 38.462 0.00 0.00 35.78 3.58
2329 2478 6.998802 AGCTATAAGATGGGTTGTAGATGAC 58.001 40.000 0.00 0.00 0.00 3.06
2330 2479 8.585881 GTTAGCTATAAGATGGGTTGTAGATGA 58.414 37.037 0.00 0.00 0.00 2.92
2331 2480 8.367911 TGTTAGCTATAAGATGGGTTGTAGATG 58.632 37.037 0.00 0.00 0.00 2.90
2332 2481 8.492415 TGTTAGCTATAAGATGGGTTGTAGAT 57.508 34.615 0.00 0.00 0.00 1.98
2333 2482 7.907841 TGTTAGCTATAAGATGGGTTGTAGA 57.092 36.000 0.00 0.00 0.00 2.59
2334 2483 8.150945 ACATGTTAGCTATAAGATGGGTTGTAG 58.849 37.037 10.22 0.00 43.55 2.74
2335 2484 8.029782 ACATGTTAGCTATAAGATGGGTTGTA 57.970 34.615 10.22 0.00 43.55 2.41
2336 2485 6.900194 ACATGTTAGCTATAAGATGGGTTGT 58.100 36.000 10.22 0.00 43.55 3.32
2337 2486 7.931407 TGTACATGTTAGCTATAAGATGGGTTG 59.069 37.037 2.30 0.00 43.55 3.77
2338 2487 8.029782 TGTACATGTTAGCTATAAGATGGGTT 57.970 34.615 2.30 0.00 43.55 4.11
2339 2488 7.612065 TGTACATGTTAGCTATAAGATGGGT 57.388 36.000 2.30 0.00 43.55 4.51
2389 2538 5.544176 TGAAAGGTGGGCCACATAATAAAAA 59.456 36.000 35.69 10.35 35.86 1.94
2390 2539 5.087323 TGAAAGGTGGGCCACATAATAAAA 58.913 37.500 35.69 11.39 35.86 1.52
2391 2540 4.678256 TGAAAGGTGGGCCACATAATAAA 58.322 39.130 35.69 13.51 35.86 1.40
2392 2541 4.323569 TGAAAGGTGGGCCACATAATAA 57.676 40.909 35.69 13.98 35.86 1.40
2393 2542 4.534647 ATGAAAGGTGGGCCACATAATA 57.465 40.909 35.69 19.38 35.86 0.98
2394 2543 2.917713 TGAAAGGTGGGCCACATAAT 57.082 45.000 35.69 22.42 35.86 1.28
2395 2544 2.917713 ATGAAAGGTGGGCCACATAA 57.082 45.000 35.69 19.62 35.86 1.90
2396 2545 2.311542 AGAATGAAAGGTGGGCCACATA 59.688 45.455 35.69 16.77 35.86 2.29
2397 2546 1.077663 AGAATGAAAGGTGGGCCACAT 59.922 47.619 35.69 28.70 35.86 3.21
2398 2547 0.482446 AGAATGAAAGGTGGGCCACA 59.518 50.000 35.69 17.39 35.86 4.17
2399 2548 1.177401 GAGAATGAAAGGTGGGCCAC 58.823 55.000 28.69 28.69 37.19 5.01
2400 2549 0.776810 TGAGAATGAAAGGTGGGCCA 59.223 50.000 0.00 0.00 37.19 5.36
2401 2550 1.177401 GTGAGAATGAAAGGTGGGCC 58.823 55.000 0.00 0.00 0.00 5.80
2402 2551 1.909700 TGTGAGAATGAAAGGTGGGC 58.090 50.000 0.00 0.00 0.00 5.36
2403 2552 3.891366 ACTTTGTGAGAATGAAAGGTGGG 59.109 43.478 0.00 0.00 0.00 4.61
2404 2553 4.794003 GCACTTTGTGAGAATGAAAGGTGG 60.794 45.833 1.52 0.00 35.23 4.61
2405 2554 4.293415 GCACTTTGTGAGAATGAAAGGTG 58.707 43.478 1.52 0.00 35.23 4.00
2406 2555 3.319122 GGCACTTTGTGAGAATGAAAGGT 59.681 43.478 1.52 0.00 35.23 3.50
2407 2556 3.571401 AGGCACTTTGTGAGAATGAAAGG 59.429 43.478 1.52 0.00 35.23 3.11
2408 2557 4.843220 AGGCACTTTGTGAGAATGAAAG 57.157 40.909 1.52 0.00 35.23 2.62
2409 2558 4.761739 CCTAGGCACTTTGTGAGAATGAAA 59.238 41.667 0.00 0.00 41.75 2.69
2410 2559 4.041567 TCCTAGGCACTTTGTGAGAATGAA 59.958 41.667 2.96 0.00 41.75 2.57
2411 2560 3.582647 TCCTAGGCACTTTGTGAGAATGA 59.417 43.478 2.96 0.00 41.75 2.57
2412 2561 3.937706 CTCCTAGGCACTTTGTGAGAATG 59.062 47.826 2.96 0.00 41.75 2.67
2413 2562 3.620966 GCTCCTAGGCACTTTGTGAGAAT 60.621 47.826 2.96 0.00 41.75 2.40
2414 2563 2.289694 GCTCCTAGGCACTTTGTGAGAA 60.290 50.000 2.96 0.00 41.75 2.87
2415 2564 1.276421 GCTCCTAGGCACTTTGTGAGA 59.724 52.381 2.96 0.00 41.75 3.27
2416 2565 1.002430 TGCTCCTAGGCACTTTGTGAG 59.998 52.381 2.96 0.00 41.75 3.51
2417 2566 1.055849 TGCTCCTAGGCACTTTGTGA 58.944 50.000 2.96 0.00 41.75 3.58
2418 2567 3.631453 TGCTCCTAGGCACTTTGTG 57.369 52.632 2.96 0.00 41.75 3.33
2425 2574 0.530744 CTAACACGTGCTCCTAGGCA 59.469 55.000 17.22 0.00 40.15 4.75
2426 2575 0.815734 TCTAACACGTGCTCCTAGGC 59.184 55.000 17.22 0.00 0.00 3.93
2427 2576 1.202313 GCTCTAACACGTGCTCCTAGG 60.202 57.143 17.22 0.82 0.00 3.02
2428 2577 1.746220 AGCTCTAACACGTGCTCCTAG 59.254 52.381 17.22 11.33 0.00 3.02
2429 2578 1.472878 CAGCTCTAACACGTGCTCCTA 59.527 52.381 17.22 1.26 31.96 2.94
2430 2579 0.244994 CAGCTCTAACACGTGCTCCT 59.755 55.000 17.22 0.00 31.96 3.69
2431 2580 0.038159 ACAGCTCTAACACGTGCTCC 60.038 55.000 17.22 0.00 31.96 4.70
2432 2581 1.068194 AGACAGCTCTAACACGTGCTC 60.068 52.381 17.22 0.00 31.96 4.26
2433 2582 0.962489 AGACAGCTCTAACACGTGCT 59.038 50.000 17.22 5.96 34.37 4.40
2434 2583 1.063806 CAGACAGCTCTAACACGTGC 58.936 55.000 17.22 0.00 0.00 5.34
2435 2584 2.423926 ACAGACAGCTCTAACACGTG 57.576 50.000 15.48 15.48 0.00 4.49
2436 2585 2.361119 TGAACAGACAGCTCTAACACGT 59.639 45.455 0.00 0.00 0.00 4.49
2437 2586 2.726760 GTGAACAGACAGCTCTAACACG 59.273 50.000 0.00 0.00 0.00 4.49
2438 2587 2.726760 CGTGAACAGACAGCTCTAACAC 59.273 50.000 0.00 0.00 0.00 3.32
2439 2588 2.621526 TCGTGAACAGACAGCTCTAACA 59.378 45.455 0.00 0.00 0.00 2.41
2440 2589 3.284323 TCGTGAACAGACAGCTCTAAC 57.716 47.619 0.00 0.00 0.00 2.34
2441 2590 3.568430 TCTTCGTGAACAGACAGCTCTAA 59.432 43.478 0.00 0.00 0.00 2.10
2442 2591 3.146847 TCTTCGTGAACAGACAGCTCTA 58.853 45.455 0.00 0.00 0.00 2.43
2443 2592 1.957177 TCTTCGTGAACAGACAGCTCT 59.043 47.619 0.00 0.00 0.00 4.09
2444 2593 2.323959 CTCTTCGTGAACAGACAGCTC 58.676 52.381 0.00 0.00 0.00 4.09
2445 2594 1.604185 GCTCTTCGTGAACAGACAGCT 60.604 52.381 0.00 0.00 0.00 4.24
2446 2595 0.787183 GCTCTTCGTGAACAGACAGC 59.213 55.000 0.00 0.00 0.00 4.40
2447 2596 1.423395 GGCTCTTCGTGAACAGACAG 58.577 55.000 0.00 0.00 0.00 3.51
2448 2597 0.033504 GGGCTCTTCGTGAACAGACA 59.966 55.000 0.00 0.00 0.00 3.41
2449 2598 1.009389 CGGGCTCTTCGTGAACAGAC 61.009 60.000 0.00 0.00 0.00 3.51
2450 2599 1.289066 CGGGCTCTTCGTGAACAGA 59.711 57.895 0.00 0.00 0.00 3.41
2451 2600 2.383527 GCGGGCTCTTCGTGAACAG 61.384 63.158 0.00 0.00 0.00 3.16
2452 2601 2.357034 GCGGGCTCTTCGTGAACA 60.357 61.111 0.00 0.00 0.00 3.18
2453 2602 0.389426 TAAGCGGGCTCTTCGTGAAC 60.389 55.000 0.00 0.00 0.00 3.18
2454 2603 0.389426 GTAAGCGGGCTCTTCGTGAA 60.389 55.000 0.00 0.00 0.00 3.18
2455 2604 1.214589 GTAAGCGGGCTCTTCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
2456 2605 1.810030 GGTAAGCGGGCTCTTCGTG 60.810 63.158 0.00 0.00 0.00 4.35
2457 2606 1.542187 AAGGTAAGCGGGCTCTTCGT 61.542 55.000 0.00 0.00 0.00 3.85
2458 2607 0.806492 GAAGGTAAGCGGGCTCTTCG 60.806 60.000 0.00 0.00 0.00 3.79
2459 2608 0.537653 AGAAGGTAAGCGGGCTCTTC 59.462 55.000 10.83 10.83 35.41 2.87
2460 2609 0.537653 GAGAAGGTAAGCGGGCTCTT 59.462 55.000 0.00 0.00 0.00 2.85
2461 2610 0.324830 AGAGAAGGTAAGCGGGCTCT 60.325 55.000 0.00 0.00 0.00 4.09
2462 2611 0.103390 GAGAGAAGGTAAGCGGGCTC 59.897 60.000 0.00 0.00 0.00 4.70
2463 2612 0.324830 AGAGAGAAGGTAAGCGGGCT 60.325 55.000 0.00 0.00 0.00 5.19
2464 2613 0.103390 GAGAGAGAAGGTAAGCGGGC 59.897 60.000 0.00 0.00 0.00 6.13
2465 2614 0.747852 GGAGAGAGAAGGTAAGCGGG 59.252 60.000 0.00 0.00 0.00 6.13
2466 2615 1.679153 GAGGAGAGAGAAGGTAAGCGG 59.321 57.143 0.00 0.00 0.00 5.52
2467 2616 2.650322 AGAGGAGAGAGAAGGTAAGCG 58.350 52.381 0.00 0.00 0.00 4.68
2468 2617 4.278310 AGAAGAGGAGAGAGAAGGTAAGC 58.722 47.826 0.00 0.00 0.00 3.09
2469 2618 5.755849 AGAGAAGAGGAGAGAGAAGGTAAG 58.244 45.833 0.00 0.00 0.00 2.34
2470 2619 5.789574 AGAGAAGAGGAGAGAGAAGGTAA 57.210 43.478 0.00 0.00 0.00 2.85
2471 2620 5.789574 AAGAGAAGAGGAGAGAGAAGGTA 57.210 43.478 0.00 0.00 0.00 3.08
2472 2621 4.675063 AAGAGAAGAGGAGAGAGAAGGT 57.325 45.455 0.00 0.00 0.00 3.50
2473 2622 5.264395 AGAAAGAGAAGAGGAGAGAGAAGG 58.736 45.833 0.00 0.00 0.00 3.46
2474 2623 6.660949 AGAAGAAAGAGAAGAGGAGAGAGAAG 59.339 42.308 0.00 0.00 0.00 2.85
2475 2624 6.552008 AGAAGAAAGAGAAGAGGAGAGAGAA 58.448 40.000 0.00 0.00 0.00 2.87
2476 2625 6.139679 AGAAGAAAGAGAAGAGGAGAGAGA 57.860 41.667 0.00 0.00 0.00 3.10
2477 2626 7.611855 AGTTAGAAGAAAGAGAAGAGGAGAGAG 59.388 40.741 0.00 0.00 0.00 3.20
2478 2627 7.466804 AGTTAGAAGAAAGAGAAGAGGAGAGA 58.533 38.462 0.00 0.00 0.00 3.10
2479 2628 7.703058 AGTTAGAAGAAAGAGAAGAGGAGAG 57.297 40.000 0.00 0.00 0.00 3.20
2480 2629 9.238368 CTTAGTTAGAAGAAAGAGAAGAGGAGA 57.762 37.037 0.00 0.00 0.00 3.71
2481 2630 7.973944 GCTTAGTTAGAAGAAAGAGAAGAGGAG 59.026 40.741 0.00 0.00 0.00 3.69
2482 2631 7.451877 TGCTTAGTTAGAAGAAAGAGAAGAGGA 59.548 37.037 0.00 0.00 0.00 3.71
2483 2632 7.607250 TGCTTAGTTAGAAGAAAGAGAAGAGG 58.393 38.462 0.00 0.00 0.00 3.69
2484 2633 8.519526 TCTGCTTAGTTAGAAGAAAGAGAAGAG 58.480 37.037 0.00 0.00 35.46 2.85
2485 2634 8.410673 TCTGCTTAGTTAGAAGAAAGAGAAGA 57.589 34.615 0.00 0.00 35.46 2.87
2514 2663 8.813951 AGCGGGCTATAAGAAATAAACTAGTAT 58.186 33.333 0.00 0.00 0.00 2.12
2515 2664 8.086522 CAGCGGGCTATAAGAAATAAACTAGTA 58.913 37.037 0.00 0.00 0.00 1.82
2516 2665 6.929606 CAGCGGGCTATAAGAAATAAACTAGT 59.070 38.462 0.00 0.00 0.00 2.57
2517 2666 7.116519 GTCAGCGGGCTATAAGAAATAAACTAG 59.883 40.741 0.00 0.00 0.00 2.57
2518 2667 6.927381 GTCAGCGGGCTATAAGAAATAAACTA 59.073 38.462 0.00 0.00 0.00 2.24
2519 2668 5.758784 GTCAGCGGGCTATAAGAAATAAACT 59.241 40.000 0.00 0.00 0.00 2.66
2520 2669 5.758784 AGTCAGCGGGCTATAAGAAATAAAC 59.241 40.000 0.00 0.00 0.00 2.01
2521 2670 5.925509 AGTCAGCGGGCTATAAGAAATAAA 58.074 37.500 0.00 0.00 0.00 1.40
2522 2671 5.546621 AGTCAGCGGGCTATAAGAAATAA 57.453 39.130 0.00 0.00 0.00 1.40
2523 2672 6.659745 TTAGTCAGCGGGCTATAAGAAATA 57.340 37.500 0.00 0.00 0.00 1.40
2524 2673 5.542779 CTTAGTCAGCGGGCTATAAGAAAT 58.457 41.667 0.00 0.00 0.00 2.17
2525 2674 4.739735 GCTTAGTCAGCGGGCTATAAGAAA 60.740 45.833 17.00 0.00 39.29 2.52
2526 2675 3.243771 GCTTAGTCAGCGGGCTATAAGAA 60.244 47.826 17.00 0.00 39.29 2.52
2527 2676 2.296471 GCTTAGTCAGCGGGCTATAAGA 59.704 50.000 17.00 0.56 39.29 2.10
2528 2677 2.678324 GCTTAGTCAGCGGGCTATAAG 58.322 52.381 0.00 0.00 39.29 1.73
2529 2678 2.814280 GCTTAGTCAGCGGGCTATAA 57.186 50.000 0.00 0.00 39.29 0.98
2539 2688 6.568869 AGCAAGTACAATAGAGCTTAGTCAG 58.431 40.000 0.00 0.00 0.00 3.51
2540 2689 6.378564 AGAGCAAGTACAATAGAGCTTAGTCA 59.621 38.462 0.00 0.00 31.61 3.41
2541 2690 6.801575 AGAGCAAGTACAATAGAGCTTAGTC 58.198 40.000 0.00 0.00 31.61 2.59
2542 2691 6.783708 AGAGCAAGTACAATAGAGCTTAGT 57.216 37.500 0.00 0.00 31.61 2.24
2543 2692 9.757227 ATTTAGAGCAAGTACAATAGAGCTTAG 57.243 33.333 0.00 0.00 31.61 2.18
2545 2694 8.887717 CAATTTAGAGCAAGTACAATAGAGCTT 58.112 33.333 0.00 0.00 31.61 3.74
2546 2695 7.011857 GCAATTTAGAGCAAGTACAATAGAGCT 59.988 37.037 0.00 0.00 34.61 4.09
2547 2696 7.128976 GCAATTTAGAGCAAGTACAATAGAGC 58.871 38.462 0.00 0.00 0.00 4.09
2548 2697 8.201554 TGCAATTTAGAGCAAGTACAATAGAG 57.798 34.615 0.00 0.00 37.90 2.43
2549 2698 8.560355 TTGCAATTTAGAGCAAGTACAATAGA 57.440 30.769 0.00 0.00 44.98 1.98
2560 2709 4.852134 ACACACATTGCAATTTAGAGCA 57.148 36.364 9.83 0.00 39.32 4.26
2561 2710 4.386652 CCAACACACATTGCAATTTAGAGC 59.613 41.667 9.83 0.00 0.00 4.09
2562 2711 5.531634 ACCAACACACATTGCAATTTAGAG 58.468 37.500 9.83 0.17 0.00 2.43
2563 2712 5.528043 ACCAACACACATTGCAATTTAGA 57.472 34.783 9.83 0.00 0.00 2.10
2564 2713 6.420588 CAAACCAACACACATTGCAATTTAG 58.579 36.000 9.83 5.11 0.00 1.85
2565 2714 5.295292 CCAAACCAACACACATTGCAATTTA 59.705 36.000 9.83 0.00 0.00 1.40
2566 2715 4.096081 CCAAACCAACACACATTGCAATTT 59.904 37.500 9.83 0.00 0.00 1.82
2567 2716 3.626670 CCAAACCAACACACATTGCAATT 59.373 39.130 9.83 0.00 0.00 2.32
2568 2717 3.204526 CCAAACCAACACACATTGCAAT 58.795 40.909 5.99 5.99 0.00 3.56
2569 2718 2.027745 ACCAAACCAACACACATTGCAA 60.028 40.909 0.00 0.00 0.00 4.08
2570 2719 1.552337 ACCAAACCAACACACATTGCA 59.448 42.857 0.00 0.00 0.00 4.08
2571 2720 2.307934 ACCAAACCAACACACATTGC 57.692 45.000 0.00 0.00 0.00 3.56
2572 2721 3.373439 CCAAACCAAACCAACACACATTG 59.627 43.478 0.00 0.00 0.00 2.82
2573 2722 3.008485 ACCAAACCAAACCAACACACATT 59.992 39.130 0.00 0.00 0.00 2.71
2574 2723 2.569404 ACCAAACCAAACCAACACACAT 59.431 40.909 0.00 0.00 0.00 3.21
2575 2724 1.971357 ACCAAACCAAACCAACACACA 59.029 42.857 0.00 0.00 0.00 3.72
2576 2725 2.753055 ACCAAACCAAACCAACACAC 57.247 45.000 0.00 0.00 0.00 3.82
2577 2726 3.771577 AAACCAAACCAAACCAACACA 57.228 38.095 0.00 0.00 0.00 3.72
2578 2727 3.815962 ACAAAACCAAACCAAACCAACAC 59.184 39.130 0.00 0.00 0.00 3.32
2579 2728 4.065789 GACAAAACCAAACCAAACCAACA 58.934 39.130 0.00 0.00 0.00 3.33
2580 2729 3.123790 CGACAAAACCAAACCAAACCAAC 59.876 43.478 0.00 0.00 0.00 3.77
2581 2730 3.244112 ACGACAAAACCAAACCAAACCAA 60.244 39.130 0.00 0.00 0.00 3.67
2584 2733 4.735985 AGTACGACAAAACCAAACCAAAC 58.264 39.130 0.00 0.00 0.00 2.93
2596 2745 0.386476 AGCCACACGAGTACGACAAA 59.614 50.000 0.00 0.00 42.66 2.83
2598 2747 0.386476 AAAGCCACACGAGTACGACA 59.614 50.000 0.00 0.00 42.66 4.35
2603 2752 1.302192 GCCCAAAGCCACACGAGTA 60.302 57.895 0.00 0.00 34.35 2.59
2773 2988 0.396811 ACCAGTAGAACGCCAAGCTT 59.603 50.000 0.00 0.00 0.00 3.74
2774 2989 0.320771 CACCAGTAGAACGCCAAGCT 60.321 55.000 0.00 0.00 0.00 3.74
2783 2998 0.105964 ACGCAACAGCACCAGTAGAA 59.894 50.000 0.00 0.00 0.00 2.10
2791 3009 3.660111 GACCCCACGCAACAGCAC 61.660 66.667 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.