Multiple sequence alignment - TraesCS2B01G311800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G311800 chr2B 100.000 2525 0 0 1 2525 445696040 445693516 0.000000e+00 4663.0
1 TraesCS2B01G311800 chr2A 94.655 1216 48 6 637 1846 507717518 507716314 0.000000e+00 1869.0
2 TraesCS2B01G311800 chr2A 94.492 472 25 1 1939 2410 507714707 507714237 0.000000e+00 726.0
3 TraesCS2B01G311800 chr2A 89.916 119 11 1 2405 2523 507705703 507705586 4.350000e-33 152.0
4 TraesCS2B01G311800 chr2A 91.667 72 3 1 1842 1910 17251885 17251814 2.070000e-16 97.1
5 TraesCS2B01G311800 chr2D 92.003 1238 64 13 637 1846 375374326 375373096 0.000000e+00 1705.0
6 TraesCS2B01G311800 chr2D 94.968 616 30 1 1908 2523 375373097 375372483 0.000000e+00 965.0
7 TraesCS2B01G311800 chr2D 89.610 77 5 1 1845 1921 558200847 558200774 7.440000e-16 95.3
8 TraesCS2B01G311800 chr2D 97.059 34 1 0 563 596 375376004 375375971 9.760000e-05 58.4
9 TraesCS2B01G311800 chr5A 81.761 159 27 2 1289 1446 19234803 19234646 5.670000e-27 132.0
10 TraesCS2B01G311800 chr1B 77.027 222 43 5 215 433 461232837 461233053 1.230000e-23 121.0
11 TraesCS2B01G311800 chr1B 79.688 128 26 0 434 561 661130747 661130620 2.670000e-15 93.5
12 TraesCS2B01G311800 chr1B 79.259 135 16 9 304 431 667683180 667683051 1.610000e-12 84.2
13 TraesCS2B01G311800 chr5D 82.576 132 15 5 306 431 566034948 566034819 2.660000e-20 110.0
14 TraesCS2B01G311800 chr5D 91.549 71 4 1 1843 1911 441356340 441356410 2.070000e-16 97.1
15 TraesCS2B01G311800 chr5D 90.164 61 6 0 349 409 398117558 398117618 2.080000e-11 80.5
16 TraesCS2B01G311800 chr7A 92.000 75 5 1 1842 1915 135963974 135963900 1.240000e-18 104.0
17 TraesCS2B01G311800 chr7A 85.417 96 9 5 428 521 269136276 269136184 7.440000e-16 95.3
18 TraesCS2B01G311800 chr6D 95.161 62 2 1 1842 1903 7460276 7460216 2.070000e-16 97.1
19 TraesCS2B01G311800 chr7D 89.744 78 3 3 1836 1909 46702739 46702663 7.440000e-16 95.3
20 TraesCS2B01G311800 chr1D 91.549 71 3 1 1842 1909 464799724 464799794 7.440000e-16 95.3
21 TraesCS2B01G311800 chr7B 90.278 72 5 2 1842 1913 620597826 620597895 2.670000e-15 93.5
22 TraesCS2B01G311800 chr3B 89.041 73 8 0 1845 1917 579281717 579281645 9.620000e-15 91.6
23 TraesCS2B01G311800 chr3D 78.295 129 27 1 434 561 67054969 67054841 5.790000e-12 82.4
24 TraesCS2B01G311800 chr3A 100.000 30 0 0 493 522 9358391 9358362 3.510000e-04 56.5
25 TraesCS2B01G311800 chr6A 100.000 29 0 0 227 255 441489844 441489872 1.000000e-03 54.7
26 TraesCS2B01G311800 chr4A 100.000 28 0 0 192 219 691645950 691645977 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G311800 chr2B 445693516 445696040 2524 True 4663.000000 4663 100.000000 1 2525 1 chr2B.!!$R1 2524
1 TraesCS2B01G311800 chr2A 507714237 507717518 3281 True 1297.500000 1869 94.573500 637 2410 2 chr2A.!!$R3 1773
2 TraesCS2B01G311800 chr2D 375372483 375376004 3521 True 909.466667 1705 94.676667 563 2523 3 chr2D.!!$R2 1960

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
606 607 0.03563 GAAGCTGGAGTGCTGGACAT 60.036 55.0 1.24 0.0 43.24 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2419 5649 0.313043 TTCTTCGAGTGGTGGTCGTC 59.687 55.0 0.0 0.0 38.6 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.598248 TCCTTTATAGGAGTAATAGTGGGACA 58.402 38.462 0.00 0.00 45.82 4.02
31 32 8.069356 TCCTTTATAGGAGTAATAGTGGGACAA 58.931 37.037 0.00 0.00 45.82 3.18
32 33 8.711170 CCTTTATAGGAGTAATAGTGGGACAAA 58.289 37.037 0.00 0.00 45.05 2.83
34 35 9.895138 TTTATAGGAGTAATAGTGGGACAAAAC 57.105 33.333 0.00 0.00 44.16 2.43
35 36 5.836024 AGGAGTAATAGTGGGACAAAACA 57.164 39.130 0.00 0.00 44.16 2.83
36 37 5.557866 AGGAGTAATAGTGGGACAAAACAC 58.442 41.667 0.00 0.00 44.16 3.32
38 39 5.411669 GGAGTAATAGTGGGACAAAACACTG 59.588 44.000 7.51 0.00 46.58 3.66
39 40 6.182507 AGTAATAGTGGGACAAAACACTGA 57.817 37.500 7.51 0.00 46.58 3.41
40 41 6.597562 AGTAATAGTGGGACAAAACACTGAA 58.402 36.000 7.51 0.00 46.58 3.02
41 42 5.767816 AATAGTGGGACAAAACACTGAAC 57.232 39.130 7.51 0.00 46.58 3.18
42 43 3.080300 AGTGGGACAAAACACTGAACA 57.920 42.857 0.00 0.00 45.54 3.18
43 44 3.016736 AGTGGGACAAAACACTGAACAG 58.983 45.455 0.00 0.00 45.54 3.16
44 45 3.013921 GTGGGACAAAACACTGAACAGA 58.986 45.455 8.87 0.00 44.16 3.41
45 46 3.442273 GTGGGACAAAACACTGAACAGAA 59.558 43.478 8.87 0.00 44.16 3.02
46 47 3.442273 TGGGACAAAACACTGAACAGAAC 59.558 43.478 8.87 0.00 31.92 3.01
47 48 3.694566 GGGACAAAACACTGAACAGAACT 59.305 43.478 8.87 0.00 0.00 3.01
48 49 4.157840 GGGACAAAACACTGAACAGAACTT 59.842 41.667 8.87 0.00 0.00 2.66
49 50 5.336451 GGGACAAAACACTGAACAGAACTTT 60.336 40.000 8.87 2.36 0.00 2.66
50 51 6.127842 GGGACAAAACACTGAACAGAACTTTA 60.128 38.462 8.87 0.00 0.00 1.85
51 52 6.745907 GGACAAAACACTGAACAGAACTTTAC 59.254 38.462 8.87 3.46 0.00 2.01
52 53 7.209471 ACAAAACACTGAACAGAACTTTACA 57.791 32.000 8.87 0.00 0.00 2.41
53 54 7.081976 ACAAAACACTGAACAGAACTTTACAC 58.918 34.615 8.87 0.00 0.00 2.90
54 55 6.811253 AAACACTGAACAGAACTTTACACA 57.189 33.333 8.87 0.00 0.00 3.72
55 56 5.796350 ACACTGAACAGAACTTTACACAC 57.204 39.130 8.87 0.00 0.00 3.82
56 57 5.242434 ACACTGAACAGAACTTTACACACA 58.758 37.500 8.87 0.00 0.00 3.72
57 58 5.880332 ACACTGAACAGAACTTTACACACAT 59.120 36.000 8.87 0.00 0.00 3.21
58 59 7.045416 ACACTGAACAGAACTTTACACACATA 58.955 34.615 8.87 0.00 0.00 2.29
59 60 7.011109 ACACTGAACAGAACTTTACACACATAC 59.989 37.037 8.87 0.00 0.00 2.39
60 61 6.200286 ACTGAACAGAACTTTACACACATACG 59.800 38.462 8.87 0.00 0.00 3.06
61 62 6.274579 TGAACAGAACTTTACACACATACGA 58.725 36.000 0.00 0.00 0.00 3.43
62 63 6.926826 TGAACAGAACTTTACACACATACGAT 59.073 34.615 0.00 0.00 0.00 3.73
63 64 6.946229 ACAGAACTTTACACACATACGATC 57.054 37.500 0.00 0.00 0.00 3.69
64 65 5.571741 ACAGAACTTTACACACATACGATCG 59.428 40.000 14.88 14.88 0.00 3.69
65 66 5.571741 CAGAACTTTACACACATACGATCGT 59.428 40.000 25.94 25.94 0.00 3.73
66 67 6.744082 CAGAACTTTACACACATACGATCGTA 59.256 38.462 28.59 28.59 34.87 3.43
67 68 6.965500 AGAACTTTACACACATACGATCGTAG 59.035 38.462 29.63 22.87 33.77 3.51
68 69 5.575957 ACTTTACACACATACGATCGTAGG 58.424 41.667 31.68 31.68 38.22 3.18
69 70 5.355071 ACTTTACACACATACGATCGTAGGA 59.645 40.000 37.61 18.30 36.11 2.94
70 71 5.816449 TTACACACATACGATCGTAGGAA 57.184 39.130 37.61 21.96 36.11 3.36
71 72 4.707030 ACACACATACGATCGTAGGAAA 57.293 40.909 37.61 17.56 36.11 3.13
72 73 5.063180 ACACACATACGATCGTAGGAAAA 57.937 39.130 37.61 16.84 36.11 2.29
73 74 5.472148 ACACACATACGATCGTAGGAAAAA 58.528 37.500 37.61 16.12 36.11 1.94
74 75 5.346822 ACACACATACGATCGTAGGAAAAAC 59.653 40.000 37.61 0.00 36.11 2.43
75 76 5.346551 CACACATACGATCGTAGGAAAAACA 59.653 40.000 37.61 14.68 36.11 2.83
76 77 6.035650 CACACATACGATCGTAGGAAAAACAT 59.964 38.462 37.61 16.91 36.11 2.71
77 78 7.221259 CACACATACGATCGTAGGAAAAACATA 59.779 37.037 37.61 13.45 36.11 2.29
78 79 7.760794 ACACATACGATCGTAGGAAAAACATAA 59.239 33.333 37.61 13.26 36.11 1.90
79 80 8.054236 CACATACGATCGTAGGAAAAACATAAC 58.946 37.037 37.61 0.00 36.11 1.89
80 81 7.760794 ACATACGATCGTAGGAAAAACATAACA 59.239 33.333 37.61 12.19 36.11 2.41
81 82 6.399204 ACGATCGTAGGAAAAACATAACAC 57.601 37.500 21.32 0.00 0.00 3.32
82 83 6.161381 ACGATCGTAGGAAAAACATAACACT 58.839 36.000 21.32 0.00 0.00 3.55
83 84 7.315142 ACGATCGTAGGAAAAACATAACACTA 58.685 34.615 21.32 0.00 0.00 2.74
84 85 7.977853 ACGATCGTAGGAAAAACATAACACTAT 59.022 33.333 21.32 0.00 0.00 2.12
85 86 8.814235 CGATCGTAGGAAAAACATAACACTATT 58.186 33.333 7.03 0.00 0.00 1.73
88 89 8.231837 TCGTAGGAAAAACATAACACTATTTGC 58.768 33.333 0.00 0.00 0.00 3.68
89 90 8.018520 CGTAGGAAAAACATAACACTATTTGCA 58.981 33.333 0.00 0.00 0.00 4.08
90 91 9.685828 GTAGGAAAAACATAACACTATTTGCAA 57.314 29.630 0.00 0.00 0.00 4.08
92 93 9.606631 AGGAAAAACATAACACTATTTGCAAAA 57.393 25.926 17.19 5.01 0.00 2.44
120 121 9.806203 AAAAACATAACACTTTTACCCACTTAC 57.194 29.630 0.00 0.00 0.00 2.34
121 122 8.522542 AAACATAACACTTTTACCCACTTACA 57.477 30.769 0.00 0.00 0.00 2.41
122 123 8.700439 AACATAACACTTTTACCCACTTACAT 57.300 30.769 0.00 0.00 0.00 2.29
123 124 9.796180 AACATAACACTTTTACCCACTTACATA 57.204 29.630 0.00 0.00 0.00 2.29
124 125 9.796180 ACATAACACTTTTACCCACTTACATAA 57.204 29.630 0.00 0.00 0.00 1.90
128 129 8.927675 ACACTTTTACCCACTTACATAAATGA 57.072 30.769 0.00 0.00 0.00 2.57
129 130 9.357161 ACACTTTTACCCACTTACATAAATGAA 57.643 29.630 0.00 0.00 0.00 2.57
134 135 9.968870 TTTACCCACTTACATAAATGAAAACAC 57.031 29.630 0.00 0.00 0.00 3.32
135 136 7.833285 ACCCACTTACATAAATGAAAACACT 57.167 32.000 0.00 0.00 0.00 3.55
136 137 8.927675 ACCCACTTACATAAATGAAAACACTA 57.072 30.769 0.00 0.00 0.00 2.74
137 138 9.357161 ACCCACTTACATAAATGAAAACACTAA 57.643 29.630 0.00 0.00 0.00 2.24
149 150 9.489084 AAATGAAAACACTAAAAATCTAAGGGC 57.511 29.630 0.00 0.00 0.00 5.19
150 151 7.589958 TGAAAACACTAAAAATCTAAGGGCA 57.410 32.000 0.00 0.00 0.00 5.36
151 152 8.189119 TGAAAACACTAAAAATCTAAGGGCAT 57.811 30.769 0.00 0.00 0.00 4.40
152 153 8.087750 TGAAAACACTAAAAATCTAAGGGCATG 58.912 33.333 0.00 0.00 0.00 4.06
153 154 6.530019 AACACTAAAAATCTAAGGGCATGG 57.470 37.500 0.00 0.00 0.00 3.66
154 155 5.580022 ACACTAAAAATCTAAGGGCATGGT 58.420 37.500 0.00 0.00 0.00 3.55
155 156 6.727394 ACACTAAAAATCTAAGGGCATGGTA 58.273 36.000 0.00 0.00 0.00 3.25
156 157 7.179269 ACACTAAAAATCTAAGGGCATGGTAA 58.821 34.615 0.00 0.00 0.00 2.85
157 158 7.839200 ACACTAAAAATCTAAGGGCATGGTAAT 59.161 33.333 0.00 0.00 0.00 1.89
158 159 8.695456 CACTAAAAATCTAAGGGCATGGTAATT 58.305 33.333 0.00 0.00 0.00 1.40
159 160 9.267071 ACTAAAAATCTAAGGGCATGGTAATTT 57.733 29.630 0.00 0.00 0.00 1.82
167 168 9.515226 TCTAAGGGCATGGTAATTTATATTGAC 57.485 33.333 0.00 0.00 0.00 3.18
168 169 9.295825 CTAAGGGCATGGTAATTTATATTGACA 57.704 33.333 0.00 0.00 0.00 3.58
169 170 7.524717 AGGGCATGGTAATTTATATTGACAC 57.475 36.000 0.00 0.00 0.00 3.67
170 171 6.206634 AGGGCATGGTAATTTATATTGACACG 59.793 38.462 0.00 0.00 0.00 4.49
171 172 6.205853 GGGCATGGTAATTTATATTGACACGA 59.794 38.462 0.00 0.00 0.00 4.35
172 173 7.094377 GGGCATGGTAATTTATATTGACACGAT 60.094 37.037 0.00 0.00 0.00 3.73
173 174 7.750458 GGCATGGTAATTTATATTGACACGATG 59.250 37.037 0.00 0.00 0.00 3.84
174 175 8.503196 GCATGGTAATTTATATTGACACGATGA 58.497 33.333 0.00 0.00 0.00 2.92
177 178 9.554395 TGGTAATTTATATTGACACGATGATGT 57.446 29.630 0.00 0.00 34.78 3.06
189 190 6.801539 ACACGATGATGTCAAATTTAGTGT 57.198 33.333 0.00 0.00 34.75 3.55
190 191 6.602179 ACACGATGATGTCAAATTTAGTGTG 58.398 36.000 0.00 0.00 37.65 3.82
191 192 5.509272 CACGATGATGTCAAATTTAGTGTGC 59.491 40.000 0.00 0.00 0.00 4.57
192 193 5.181056 ACGATGATGTCAAATTTAGTGTGCA 59.819 36.000 0.00 0.00 0.00 4.57
193 194 6.085573 CGATGATGTCAAATTTAGTGTGCAA 58.914 36.000 0.00 0.00 0.00 4.08
194 195 6.581919 CGATGATGTCAAATTTAGTGTGCAAA 59.418 34.615 0.00 0.00 0.00 3.68
195 196 7.409661 CGATGATGTCAAATTTAGTGTGCAAAC 60.410 37.037 0.00 0.00 0.00 2.93
196 197 6.567959 TGATGTCAAATTTAGTGTGCAAACA 58.432 32.000 10.29 0.00 0.00 2.83
197 198 7.208777 TGATGTCAAATTTAGTGTGCAAACAT 58.791 30.769 10.29 0.00 0.00 2.71
198 199 6.825284 TGTCAAATTTAGTGTGCAAACATG 57.175 33.333 10.29 0.00 0.00 3.21
199 200 6.567959 TGTCAAATTTAGTGTGCAAACATGA 58.432 32.000 10.29 1.12 0.00 3.07
200 201 6.475076 TGTCAAATTTAGTGTGCAAACATGAC 59.525 34.615 10.29 12.80 35.95 3.06
201 202 6.475076 GTCAAATTTAGTGTGCAAACATGACA 59.525 34.615 10.29 0.00 35.71 3.58
202 203 7.009999 GTCAAATTTAGTGTGCAAACATGACAA 59.990 33.333 10.29 0.00 35.71 3.18
203 204 7.710044 TCAAATTTAGTGTGCAAACATGACAAT 59.290 29.630 10.29 0.00 0.00 2.71
204 205 8.336806 CAAATTTAGTGTGCAAACATGACAATT 58.663 29.630 10.29 3.37 0.00 2.32
205 206 8.436046 AATTTAGTGTGCAAACATGACAATTT 57.564 26.923 10.29 0.00 0.00 1.82
206 207 7.840342 TTTAGTGTGCAAACATGACAATTTT 57.160 28.000 10.29 0.00 0.00 1.82
207 208 5.971895 AGTGTGCAAACATGACAATTTTC 57.028 34.783 10.29 0.00 0.00 2.29
208 209 5.663456 AGTGTGCAAACATGACAATTTTCT 58.337 33.333 10.29 0.00 0.00 2.52
209 210 5.521010 AGTGTGCAAACATGACAATTTTCTG 59.479 36.000 10.29 0.00 0.00 3.02
210 211 5.519566 GTGTGCAAACATGACAATTTTCTGA 59.480 36.000 0.88 0.00 0.00 3.27
211 212 5.519566 TGTGCAAACATGACAATTTTCTGAC 59.480 36.000 0.00 0.00 0.00 3.51
212 213 5.519566 GTGCAAACATGACAATTTTCTGACA 59.480 36.000 0.00 0.00 0.00 3.58
213 214 6.035866 GTGCAAACATGACAATTTTCTGACAA 59.964 34.615 0.00 0.00 0.00 3.18
214 215 6.762187 TGCAAACATGACAATTTTCTGACAAT 59.238 30.769 0.00 0.00 0.00 2.71
215 216 7.924947 TGCAAACATGACAATTTTCTGACAATA 59.075 29.630 0.00 0.00 0.00 1.90
216 217 8.763356 GCAAACATGACAATTTTCTGACAATAA 58.237 29.630 0.00 0.00 0.00 1.40
223 224 9.695526 TGACAATTTTCTGACAATAAATGAAGG 57.304 29.630 0.00 0.00 0.00 3.46
224 225 9.912634 GACAATTTTCTGACAATAAATGAAGGA 57.087 29.630 0.00 0.00 0.00 3.36
225 226 9.696917 ACAATTTTCTGACAATAAATGAAGGAC 57.303 29.630 0.00 0.00 0.00 3.85
226 227 9.143631 CAATTTTCTGACAATAAATGAAGGACC 57.856 33.333 0.00 0.00 0.00 4.46
227 228 6.834168 TTTCTGACAATAAATGAAGGACCC 57.166 37.500 0.00 0.00 0.00 4.46
228 229 5.779241 TCTGACAATAAATGAAGGACCCT 57.221 39.130 0.00 0.00 0.00 4.34
229 230 6.884472 TCTGACAATAAATGAAGGACCCTA 57.116 37.500 0.00 0.00 0.00 3.53
230 231 7.265599 TCTGACAATAAATGAAGGACCCTAA 57.734 36.000 0.00 0.00 0.00 2.69
231 232 7.872138 TCTGACAATAAATGAAGGACCCTAAT 58.128 34.615 0.00 0.00 0.00 1.73
232 233 8.998814 TCTGACAATAAATGAAGGACCCTAATA 58.001 33.333 0.00 0.00 0.00 0.98
233 234 9.627123 CTGACAATAAATGAAGGACCCTAATAA 57.373 33.333 0.00 0.00 0.00 1.40
234 235 9.627123 TGACAATAAATGAAGGACCCTAATAAG 57.373 33.333 0.00 0.00 0.00 1.73
235 236 9.628500 GACAATAAATGAAGGACCCTAATAAGT 57.372 33.333 0.00 0.00 0.00 2.24
236 237 9.408648 ACAATAAATGAAGGACCCTAATAAGTG 57.591 33.333 0.00 0.00 0.00 3.16
237 238 9.408648 CAATAAATGAAGGACCCTAATAAGTGT 57.591 33.333 0.00 0.00 0.00 3.55
238 239 9.628500 AATAAATGAAGGACCCTAATAAGTGTC 57.372 33.333 0.00 0.00 0.00 3.67
239 240 6.636454 AATGAAGGACCCTAATAAGTGTCA 57.364 37.500 0.00 0.00 0.00 3.58
240 241 5.416271 TGAAGGACCCTAATAAGTGTCAC 57.584 43.478 0.00 0.00 0.00 3.67
241 242 4.841813 TGAAGGACCCTAATAAGTGTCACA 59.158 41.667 5.62 0.00 0.00 3.58
242 243 4.820894 AGGACCCTAATAAGTGTCACAC 57.179 45.455 0.00 0.00 34.10 3.82
243 244 4.164981 AGGACCCTAATAAGTGTCACACA 58.835 43.478 11.40 0.00 36.74 3.72
244 245 4.783227 AGGACCCTAATAAGTGTCACACAT 59.217 41.667 11.40 0.00 36.74 3.21
245 246 4.876107 GGACCCTAATAAGTGTCACACATG 59.124 45.833 11.40 0.00 36.74 3.21
246 247 5.488341 GACCCTAATAAGTGTCACACATGT 58.512 41.667 11.40 0.00 36.74 3.21
247 248 5.245531 ACCCTAATAAGTGTCACACATGTG 58.754 41.667 24.25 24.25 46.91 3.21
248 249 4.635765 CCCTAATAAGTGTCACACATGTGG 59.364 45.833 28.64 17.57 45.65 4.17
249 250 5.245531 CCTAATAAGTGTCACACATGTGGT 58.754 41.667 28.64 12.37 45.65 4.16
250 251 6.403049 CCTAATAAGTGTCACACATGTGGTA 58.597 40.000 28.64 13.99 45.65 3.25
251 252 6.312918 CCTAATAAGTGTCACACATGTGGTAC 59.687 42.308 28.64 23.84 45.65 3.34
252 253 3.552132 AAGTGTCACACATGTGGTACA 57.448 42.857 28.64 25.87 45.65 2.90
253 254 3.552132 AGTGTCACACATGTGGTACAA 57.448 42.857 28.64 13.56 45.65 2.41
254 255 3.879998 AGTGTCACACATGTGGTACAAA 58.120 40.909 28.64 9.28 45.65 2.83
255 256 3.625764 AGTGTCACACATGTGGTACAAAC 59.374 43.478 28.64 18.73 45.65 2.93
256 257 3.375610 GTGTCACACATGTGGTACAAACA 59.624 43.478 28.64 18.34 45.65 2.83
257 258 3.375610 TGTCACACATGTGGTACAAACAC 59.624 43.478 28.64 12.99 44.16 3.32
266 267 4.834534 TGTGGTACAAACACAGTACAACT 58.165 39.130 11.11 0.00 43.58 3.16
267 268 4.871557 TGTGGTACAAACACAGTACAACTC 59.128 41.667 11.11 0.00 43.58 3.01
268 269 4.271776 GTGGTACAAACACAGTACAACTCC 59.728 45.833 0.00 0.00 44.16 3.85
269 270 3.492011 GGTACAAACACAGTACAACTCCG 59.508 47.826 0.00 0.00 42.73 4.63
270 271 3.530265 ACAAACACAGTACAACTCCGA 57.470 42.857 0.00 0.00 0.00 4.55
271 272 4.067972 ACAAACACAGTACAACTCCGAT 57.932 40.909 0.00 0.00 0.00 4.18
272 273 4.448210 ACAAACACAGTACAACTCCGATT 58.552 39.130 0.00 0.00 0.00 3.34
273 274 4.879545 ACAAACACAGTACAACTCCGATTT 59.120 37.500 0.00 0.00 0.00 2.17
274 275 5.355910 ACAAACACAGTACAACTCCGATTTT 59.644 36.000 0.00 0.00 0.00 1.82
275 276 6.127842 ACAAACACAGTACAACTCCGATTTTT 60.128 34.615 0.00 0.00 0.00 1.94
298 299 4.950434 TTTATGGCAAGTTTAGTACCGC 57.050 40.909 0.00 0.00 0.00 5.68
299 300 1.365699 ATGGCAAGTTTAGTACCGCG 58.634 50.000 0.00 0.00 0.00 6.46
300 301 0.317799 TGGCAAGTTTAGTACCGCGA 59.682 50.000 8.23 0.00 0.00 5.87
301 302 0.997196 GGCAAGTTTAGTACCGCGAG 59.003 55.000 8.23 0.00 0.00 5.03
316 317 3.354089 CGCGAGGATGGCAATTTATTT 57.646 42.857 0.00 0.00 41.24 1.40
317 318 3.705604 CGCGAGGATGGCAATTTATTTT 58.294 40.909 0.00 0.00 41.24 1.82
318 319 3.730715 CGCGAGGATGGCAATTTATTTTC 59.269 43.478 0.00 0.00 41.24 2.29
319 320 3.730715 GCGAGGATGGCAATTTATTTTCG 59.269 43.478 0.00 0.00 40.68 3.46
320 321 4.290155 CGAGGATGGCAATTTATTTTCGG 58.710 43.478 0.00 0.00 0.00 4.30
321 322 4.036262 CGAGGATGGCAATTTATTTTCGGA 59.964 41.667 0.00 0.00 0.00 4.55
322 323 5.520376 AGGATGGCAATTTATTTTCGGAG 57.480 39.130 0.00 0.00 0.00 4.63
323 324 5.200483 AGGATGGCAATTTATTTTCGGAGA 58.800 37.500 0.00 0.00 0.00 3.71
324 325 5.835280 AGGATGGCAATTTATTTTCGGAGAT 59.165 36.000 0.00 0.00 35.04 2.75
325 326 5.922544 GGATGGCAATTTATTTTCGGAGATG 59.077 40.000 0.00 0.00 35.04 2.90
326 327 5.261209 TGGCAATTTATTTTCGGAGATGG 57.739 39.130 0.00 0.00 35.04 3.51
327 328 4.709397 TGGCAATTTATTTTCGGAGATGGT 59.291 37.500 0.00 0.00 35.04 3.55
328 329 5.888724 TGGCAATTTATTTTCGGAGATGGTA 59.111 36.000 0.00 0.00 35.04 3.25
329 330 6.378564 TGGCAATTTATTTTCGGAGATGGTAA 59.621 34.615 0.00 0.00 35.04 2.85
330 331 6.918022 GGCAATTTATTTTCGGAGATGGTAAG 59.082 38.462 0.00 0.00 35.04 2.34
331 332 7.416326 GGCAATTTATTTTCGGAGATGGTAAGT 60.416 37.037 0.00 0.00 35.04 2.24
332 333 7.973944 GCAATTTATTTTCGGAGATGGTAAGTT 59.026 33.333 0.00 0.00 35.04 2.66
333 334 9.855021 CAATTTATTTTCGGAGATGGTAAGTTT 57.145 29.630 0.00 0.00 35.04 2.66
335 336 8.624367 TTTATTTTCGGAGATGGTAAGTTTCA 57.376 30.769 0.00 0.00 35.04 2.69
336 337 8.624367 TTATTTTCGGAGATGGTAAGTTTCAA 57.376 30.769 0.00 0.00 35.04 2.69
337 338 7.703058 ATTTTCGGAGATGGTAAGTTTCAAT 57.297 32.000 0.00 0.00 35.04 2.57
338 339 7.519032 TTTTCGGAGATGGTAAGTTTCAATT 57.481 32.000 0.00 0.00 35.04 2.32
339 340 7.519032 TTTCGGAGATGGTAAGTTTCAATTT 57.481 32.000 0.00 0.00 35.04 1.82
340 341 7.519032 TTCGGAGATGGTAAGTTTCAATTTT 57.481 32.000 0.00 0.00 35.04 1.82
341 342 7.519032 TCGGAGATGGTAAGTTTCAATTTTT 57.481 32.000 0.00 0.00 0.00 1.94
396 397 3.036431 AAAAACTTCAGGGCCGGAG 57.964 52.632 5.05 4.30 0.00 4.63
397 398 0.185175 AAAAACTTCAGGGCCGGAGT 59.815 50.000 5.05 4.98 0.00 3.85
398 399 0.537371 AAAACTTCAGGGCCGGAGTG 60.537 55.000 5.05 6.83 0.00 3.51
399 400 2.411765 AAACTTCAGGGCCGGAGTGG 62.412 60.000 5.05 4.37 42.50 4.00
400 401 3.322466 CTTCAGGGCCGGAGTGGT 61.322 66.667 5.05 0.00 41.21 4.16
401 402 2.852075 TTCAGGGCCGGAGTGGTT 60.852 61.111 5.05 0.00 41.21 3.67
402 403 2.804828 CTTCAGGGCCGGAGTGGTTC 62.805 65.000 5.05 0.00 41.21 3.62
403 404 4.760047 CAGGGCCGGAGTGGTTCG 62.760 72.222 5.05 0.00 41.21 3.95
405 406 3.384532 GGGCCGGAGTGGTTCGTA 61.385 66.667 5.05 0.00 41.21 3.43
406 407 2.125793 GGCCGGAGTGGTTCGTAC 60.126 66.667 5.05 0.00 41.21 3.67
407 408 2.125793 GCCGGAGTGGTTCGTACC 60.126 66.667 5.05 3.92 45.26 3.34
422 423 3.595709 CGTACCAAACGTGTGACATTT 57.404 42.857 7.48 0.00 46.72 2.32
423 424 4.712191 CGTACCAAACGTGTGACATTTA 57.288 40.909 7.48 0.00 46.72 1.40
424 425 5.272167 CGTACCAAACGTGTGACATTTAT 57.728 39.130 7.48 0.00 46.72 1.40
425 426 5.310489 CGTACCAAACGTGTGACATTTATC 58.690 41.667 7.48 0.00 46.72 1.75
426 427 5.107414 CGTACCAAACGTGTGACATTTATCA 60.107 40.000 7.48 0.00 46.72 2.15
427 428 5.957842 ACCAAACGTGTGACATTTATCAT 57.042 34.783 7.48 0.00 0.00 2.45
428 429 6.325919 ACCAAACGTGTGACATTTATCATT 57.674 33.333 7.48 0.00 0.00 2.57
429 430 6.744112 ACCAAACGTGTGACATTTATCATTT 58.256 32.000 7.48 0.00 0.00 2.32
430 431 6.640499 ACCAAACGTGTGACATTTATCATTTG 59.360 34.615 7.48 0.00 30.12 2.32
431 432 6.089283 CCAAACGTGTGACATTTATCATTTGG 59.911 38.462 7.48 0.00 38.06 3.28
432 433 5.309323 ACGTGTGACATTTATCATTTGGG 57.691 39.130 0.00 0.00 0.00 4.12
433 434 5.007034 ACGTGTGACATTTATCATTTGGGA 58.993 37.500 0.00 0.00 0.00 4.37
434 435 5.475220 ACGTGTGACATTTATCATTTGGGAA 59.525 36.000 0.00 0.00 0.00 3.97
435 436 6.015856 ACGTGTGACATTTATCATTTGGGAAA 60.016 34.615 0.00 0.00 0.00 3.13
436 437 6.865726 CGTGTGACATTTATCATTTGGGAAAA 59.134 34.615 0.00 0.00 0.00 2.29
437 438 7.545265 CGTGTGACATTTATCATTTGGGAAAAT 59.455 33.333 0.00 0.00 0.00 1.82
438 439 9.868277 GTGTGACATTTATCATTTGGGAAAATA 57.132 29.630 0.00 0.00 0.00 1.40
447 448 6.036577 TCATTTGGGAAAATAAACTGAGGC 57.963 37.500 0.00 0.00 0.00 4.70
448 449 4.513198 TTTGGGAAAATAAACTGAGGCG 57.487 40.909 0.00 0.00 0.00 5.52
449 450 3.426787 TGGGAAAATAAACTGAGGCGA 57.573 42.857 0.00 0.00 0.00 5.54
450 451 3.757270 TGGGAAAATAAACTGAGGCGAA 58.243 40.909 0.00 0.00 0.00 4.70
451 452 4.340617 TGGGAAAATAAACTGAGGCGAAT 58.659 39.130 0.00 0.00 0.00 3.34
452 453 4.770010 TGGGAAAATAAACTGAGGCGAATT 59.230 37.500 0.00 0.00 0.00 2.17
453 454 5.245075 TGGGAAAATAAACTGAGGCGAATTT 59.755 36.000 0.00 0.00 0.00 1.82
454 455 5.576774 GGGAAAATAAACTGAGGCGAATTTG 59.423 40.000 0.00 0.00 0.00 2.32
455 456 5.062183 GGAAAATAAACTGAGGCGAATTTGC 59.938 40.000 9.36 9.36 0.00 3.68
463 464 4.440214 GCGAATTTGCCACACTCG 57.560 55.556 6.38 0.00 0.00 4.18
464 465 1.574428 GCGAATTTGCCACACTCGT 59.426 52.632 6.38 0.00 32.23 4.18
465 466 0.452784 GCGAATTTGCCACACTCGTC 60.453 55.000 6.38 0.00 32.23 4.20
466 467 0.865111 CGAATTTGCCACACTCGTCA 59.135 50.000 0.00 0.00 0.00 4.35
467 468 1.262950 CGAATTTGCCACACTCGTCAA 59.737 47.619 0.00 0.00 0.00 3.18
468 469 2.650608 GAATTTGCCACACTCGTCAAC 58.349 47.619 0.00 0.00 0.00 3.18
469 470 1.967319 ATTTGCCACACTCGTCAACT 58.033 45.000 0.00 0.00 0.00 3.16
470 471 1.745232 TTTGCCACACTCGTCAACTT 58.255 45.000 0.00 0.00 0.00 2.66
471 472 2.605837 TTGCCACACTCGTCAACTTA 57.394 45.000 0.00 0.00 0.00 2.24
472 473 2.605837 TGCCACACTCGTCAACTTAA 57.394 45.000 0.00 0.00 0.00 1.85
473 474 2.206750 TGCCACACTCGTCAACTTAAC 58.793 47.619 0.00 0.00 0.00 2.01
474 475 2.159014 TGCCACACTCGTCAACTTAACT 60.159 45.455 0.00 0.00 0.00 2.24
475 476 2.870411 GCCACACTCGTCAACTTAACTT 59.130 45.455 0.00 0.00 0.00 2.66
476 477 3.303132 GCCACACTCGTCAACTTAACTTG 60.303 47.826 0.00 0.00 0.00 3.16
477 478 3.303132 CCACACTCGTCAACTTAACTTGC 60.303 47.826 0.00 0.00 0.00 4.01
478 479 2.870411 ACACTCGTCAACTTAACTTGCC 59.130 45.455 0.00 0.00 0.00 4.52
479 480 2.869801 CACTCGTCAACTTAACTTGCCA 59.130 45.455 0.00 0.00 0.00 4.92
480 481 3.498397 CACTCGTCAACTTAACTTGCCAT 59.502 43.478 0.00 0.00 0.00 4.40
481 482 4.024048 CACTCGTCAACTTAACTTGCCATT 60.024 41.667 0.00 0.00 0.00 3.16
482 483 4.213482 ACTCGTCAACTTAACTTGCCATTC 59.787 41.667 0.00 0.00 0.00 2.67
483 484 4.385825 TCGTCAACTTAACTTGCCATTCT 58.614 39.130 0.00 0.00 0.00 2.40
484 485 4.451096 TCGTCAACTTAACTTGCCATTCTC 59.549 41.667 0.00 0.00 0.00 2.87
485 486 4.452455 CGTCAACTTAACTTGCCATTCTCT 59.548 41.667 0.00 0.00 0.00 3.10
486 487 5.637810 CGTCAACTTAACTTGCCATTCTCTA 59.362 40.000 0.00 0.00 0.00 2.43
487 488 6.147164 CGTCAACTTAACTTGCCATTCTCTAA 59.853 38.462 0.00 0.00 0.00 2.10
488 489 7.298854 GTCAACTTAACTTGCCATTCTCTAAC 58.701 38.462 0.00 0.00 0.00 2.34
489 490 6.995686 TCAACTTAACTTGCCATTCTCTAACA 59.004 34.615 0.00 0.00 0.00 2.41
490 491 7.500892 TCAACTTAACTTGCCATTCTCTAACAA 59.499 33.333 0.00 0.00 0.00 2.83
491 492 8.299570 CAACTTAACTTGCCATTCTCTAACAAT 58.700 33.333 0.00 0.00 0.00 2.71
492 493 9.515226 AACTTAACTTGCCATTCTCTAACAATA 57.485 29.630 0.00 0.00 0.00 1.90
493 494 9.686683 ACTTAACTTGCCATTCTCTAACAATAT 57.313 29.630 0.00 0.00 0.00 1.28
500 501 9.748708 TTGCCATTCTCTAACAATATAATTTGC 57.251 29.630 0.00 0.00 0.00 3.68
501 502 8.359642 TGCCATTCTCTAACAATATAATTTGCC 58.640 33.333 0.00 0.00 0.00 4.52
502 503 8.359642 GCCATTCTCTAACAATATAATTTGCCA 58.640 33.333 0.00 0.00 0.00 4.92
520 521 8.804688 ATTTGCCATGAAAAATGTTTGATTTG 57.195 26.923 0.00 0.00 0.00 2.32
521 522 5.759963 TGCCATGAAAAATGTTTGATTTGC 58.240 33.333 0.00 0.00 0.00 3.68
522 523 5.531659 TGCCATGAAAAATGTTTGATTTGCT 59.468 32.000 0.00 0.00 0.00 3.91
523 524 6.709397 TGCCATGAAAAATGTTTGATTTGCTA 59.291 30.769 0.00 0.00 0.00 3.49
524 525 7.017055 GCCATGAAAAATGTTTGATTTGCTAC 58.983 34.615 0.00 0.00 0.00 3.58
525 526 7.228840 CCATGAAAAATGTTTGATTTGCTACG 58.771 34.615 0.00 0.00 0.00 3.51
526 527 6.761731 TGAAAAATGTTTGATTTGCTACGG 57.238 33.333 0.00 0.00 0.00 4.02
527 528 6.276847 TGAAAAATGTTTGATTTGCTACGGT 58.723 32.000 0.00 0.00 0.00 4.83
528 529 7.426410 TGAAAAATGTTTGATTTGCTACGGTA 58.574 30.769 0.00 0.00 0.00 4.02
529 530 7.380065 TGAAAAATGTTTGATTTGCTACGGTAC 59.620 33.333 0.00 0.00 0.00 3.34
530 531 5.950758 AATGTTTGATTTGCTACGGTACA 57.049 34.783 0.00 0.00 0.00 2.90
531 532 5.950758 ATGTTTGATTTGCTACGGTACAA 57.049 34.783 0.00 0.00 0.00 2.41
532 533 5.752892 TGTTTGATTTGCTACGGTACAAA 57.247 34.783 14.02 14.02 39.87 2.83
533 534 6.132791 TGTTTGATTTGCTACGGTACAAAA 57.867 33.333 14.99 6.52 39.09 2.44
534 535 6.740110 TGTTTGATTTGCTACGGTACAAAAT 58.260 32.000 14.99 9.91 39.09 1.82
535 536 6.858993 TGTTTGATTTGCTACGGTACAAAATC 59.141 34.615 16.60 16.60 39.09 2.17
536 537 6.811253 TTGATTTGCTACGGTACAAAATCT 57.189 33.333 20.51 8.58 39.09 2.40
537 538 6.417191 TGATTTGCTACGGTACAAAATCTC 57.583 37.500 20.51 14.00 39.09 2.75
538 539 5.935206 TGATTTGCTACGGTACAAAATCTCA 59.065 36.000 20.51 15.44 39.09 3.27
539 540 5.600908 TTTGCTACGGTACAAAATCTCAC 57.399 39.130 11.07 0.00 33.06 3.51
540 541 3.247442 TGCTACGGTACAAAATCTCACG 58.753 45.455 0.00 0.00 0.00 4.35
541 542 3.248266 GCTACGGTACAAAATCTCACGT 58.752 45.455 0.00 0.00 36.93 4.49
542 543 3.302699 GCTACGGTACAAAATCTCACGTC 59.697 47.826 0.00 0.00 34.69 4.34
543 544 3.374220 ACGGTACAAAATCTCACGTCA 57.626 42.857 0.00 0.00 0.00 4.35
544 545 3.054878 ACGGTACAAAATCTCACGTCAC 58.945 45.455 0.00 0.00 0.00 3.67
545 546 3.054166 CGGTACAAAATCTCACGTCACA 58.946 45.455 0.00 0.00 0.00 3.58
546 547 3.678072 CGGTACAAAATCTCACGTCACAT 59.322 43.478 0.00 0.00 0.00 3.21
547 548 4.151689 CGGTACAAAATCTCACGTCACATT 59.848 41.667 0.00 0.00 0.00 2.71
548 549 5.333798 CGGTACAAAATCTCACGTCACATTT 60.334 40.000 0.00 0.00 0.00 2.32
549 550 6.128769 CGGTACAAAATCTCACGTCACATTTA 60.129 38.462 0.00 0.00 0.00 1.40
550 551 7.412563 CGGTACAAAATCTCACGTCACATTTAT 60.413 37.037 0.00 0.00 0.00 1.40
551 552 8.875803 GGTACAAAATCTCACGTCACATTTATA 58.124 33.333 0.00 0.00 0.00 0.98
552 553 9.901724 GTACAAAATCTCACGTCACATTTATAG 57.098 33.333 0.00 0.00 0.00 1.31
553 554 8.547967 ACAAAATCTCACGTCACATTTATAGT 57.452 30.769 0.00 0.00 0.00 2.12
554 555 8.443160 ACAAAATCTCACGTCACATTTATAGTG 58.557 33.333 0.00 0.00 38.32 2.74
555 556 7.539712 AAATCTCACGTCACATTTATAGTGG 57.460 36.000 0.00 0.00 37.58 4.00
556 557 5.907866 TCTCACGTCACATTTATAGTGGA 57.092 39.130 0.00 0.00 37.58 4.02
557 558 5.891451 TCTCACGTCACATTTATAGTGGAG 58.109 41.667 0.00 0.00 37.58 3.86
558 559 5.650703 TCTCACGTCACATTTATAGTGGAGA 59.349 40.000 0.00 0.00 37.58 3.71
559 560 5.647589 TCACGTCACATTTATAGTGGAGAC 58.352 41.667 0.00 0.00 37.58 3.36
560 561 4.804139 CACGTCACATTTATAGTGGAGACC 59.196 45.833 0.00 0.00 37.58 3.85
561 562 4.142004 ACGTCACATTTATAGTGGAGACCC 60.142 45.833 0.00 0.00 37.58 4.46
591 592 1.065551 AGCACAAACGTCAAAGGAAGC 59.934 47.619 0.00 0.00 0.00 3.86
596 597 1.884235 AACGTCAAAGGAAGCTGGAG 58.116 50.000 0.00 0.00 0.00 3.86
597 598 0.759346 ACGTCAAAGGAAGCTGGAGT 59.241 50.000 0.00 0.00 0.00 3.85
598 599 1.151668 CGTCAAAGGAAGCTGGAGTG 58.848 55.000 0.00 0.00 0.00 3.51
601 602 0.879765 CAAAGGAAGCTGGAGTGCTG 59.120 55.000 0.00 0.00 43.24 4.41
602 603 0.251077 AAAGGAAGCTGGAGTGCTGG 60.251 55.000 0.00 0.00 43.24 4.85
603 604 1.130054 AAGGAAGCTGGAGTGCTGGA 61.130 55.000 0.00 0.00 43.24 3.86
604 605 1.376553 GGAAGCTGGAGTGCTGGAC 60.377 63.158 0.00 0.00 43.24 4.02
605 606 1.372683 GAAGCTGGAGTGCTGGACA 59.627 57.895 1.24 0.00 43.24 4.02
606 607 0.035630 GAAGCTGGAGTGCTGGACAT 60.036 55.000 1.24 0.00 43.24 3.06
607 608 0.035630 AAGCTGGAGTGCTGGACATC 60.036 55.000 1.24 0.00 43.24 3.06
608 609 0.908656 AGCTGGAGTGCTGGACATCT 60.909 55.000 1.24 0.00 42.33 2.90
609 610 0.461693 GCTGGAGTGCTGGACATCTC 60.462 60.000 1.24 0.00 0.00 2.75
610 611 0.177604 CTGGAGTGCTGGACATCTCC 59.822 60.000 1.24 0.54 42.38 3.71
611 612 0.252421 TGGAGTGCTGGACATCTCCT 60.252 55.000 1.24 0.00 42.46 3.69
612 613 0.463620 GGAGTGCTGGACATCTCCTC 59.536 60.000 1.24 0.00 40.55 3.71
613 614 1.189752 GAGTGCTGGACATCTCCTCA 58.810 55.000 1.24 0.00 37.48 3.86
614 615 1.552337 GAGTGCTGGACATCTCCTCAA 59.448 52.381 1.24 0.00 37.48 3.02
615 616 1.980765 AGTGCTGGACATCTCCTCAAA 59.019 47.619 1.24 0.00 37.48 2.69
616 617 2.079925 GTGCTGGACATCTCCTCAAAC 58.920 52.381 0.00 0.00 37.48 2.93
617 618 1.338105 TGCTGGACATCTCCTCAAACG 60.338 52.381 0.00 0.00 37.48 3.60
618 619 1.066858 GCTGGACATCTCCTCAAACGA 60.067 52.381 0.00 0.00 37.48 3.85
645 2264 3.358118 AGGAAGCTGGACACTACTAGTC 58.642 50.000 0.00 0.00 35.29 2.59
654 2273 3.433314 GGACACTACTAGTCCGGATCAGA 60.433 52.174 19.05 0.54 45.35 3.27
655 2274 4.391155 GACACTACTAGTCCGGATCAGAT 58.609 47.826 19.05 8.29 0.00 2.90
656 2275 4.794334 ACACTACTAGTCCGGATCAGATT 58.206 43.478 19.05 3.65 0.00 2.40
657 2276 5.202004 ACACTACTAGTCCGGATCAGATTT 58.798 41.667 19.05 3.05 0.00 2.17
696 2315 2.736144 ACGACTGTTTCTGCGGATAA 57.264 45.000 0.00 0.00 0.00 1.75
723 2342 1.896694 GAGAGAGGCCAGGTGTCTG 59.103 63.158 5.01 0.00 40.59 3.51
730 2349 1.302832 GCCAGGTGTCTGAAGTGGG 60.303 63.158 0.00 0.00 43.49 4.61
845 2464 1.282570 CGCTCTCTCGATCAGCTCC 59.717 63.158 8.31 0.00 0.00 4.70
1084 2706 2.537560 CCCGCGCCATCATTGAGAC 61.538 63.158 0.00 0.00 0.00 3.36
1158 2780 0.323178 AGAGCTTAGACCCCGACGAA 60.323 55.000 0.00 0.00 0.00 3.85
1675 3317 3.111098 GGAACAATCGCAGCAAATCATC 58.889 45.455 0.00 0.00 0.00 2.92
1676 3318 3.427909 GGAACAATCGCAGCAAATCATCA 60.428 43.478 0.00 0.00 0.00 3.07
1677 3319 4.357142 GAACAATCGCAGCAAATCATCAT 58.643 39.130 0.00 0.00 0.00 2.45
1825 3481 9.436957 AGTACCATTTTCAGTATTACACTCAAG 57.563 33.333 0.00 0.00 34.26 3.02
1850 3506 8.643324 AGATCATAATGTAACTCAACTACTCCC 58.357 37.037 0.00 0.00 0.00 4.30
1851 3507 7.973048 TCATAATGTAACTCAACTACTCCCT 57.027 36.000 0.00 0.00 0.00 4.20
1852 3508 8.008513 TCATAATGTAACTCAACTACTCCCTC 57.991 38.462 0.00 0.00 0.00 4.30
1853 3509 5.678955 AATGTAACTCAACTACTCCCTCC 57.321 43.478 0.00 0.00 0.00 4.30
1854 3510 3.087031 TGTAACTCAACTACTCCCTCCG 58.913 50.000 0.00 0.00 0.00 4.63
1855 3511 2.305858 AACTCAACTACTCCCTCCGT 57.694 50.000 0.00 0.00 0.00 4.69
1856 3512 1.836802 ACTCAACTACTCCCTCCGTC 58.163 55.000 0.00 0.00 0.00 4.79
1857 3513 1.104630 CTCAACTACTCCCTCCGTCC 58.895 60.000 0.00 0.00 0.00 4.79
1858 3514 0.324091 TCAACTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
1859 3515 0.613853 CAACTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
1860 3516 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
1861 3517 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
1862 3518 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
1863 3519 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
1864 3520 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
1865 3521 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1866 3522 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1867 3523 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1868 3524 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1869 3525 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1870 3526 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
1871 3527 5.024118 CCCTCCGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
1872 3528 5.105310 CCCTCCGTCCCATAATATAAGAGTG 60.105 48.000 0.00 0.00 0.00 3.51
1873 3529 5.480772 CCTCCGTCCCATAATATAAGAGTGT 59.519 44.000 0.00 0.00 0.00 3.55
1874 3530 6.014499 CCTCCGTCCCATAATATAAGAGTGTT 60.014 42.308 0.00 0.00 0.00 3.32
1875 3531 7.369551 TCCGTCCCATAATATAAGAGTGTTT 57.630 36.000 0.00 0.00 0.00 2.83
1876 3532 7.798071 TCCGTCCCATAATATAAGAGTGTTTT 58.202 34.615 0.00 0.00 0.00 2.43
1877 3533 8.269317 TCCGTCCCATAATATAAGAGTGTTTTT 58.731 33.333 0.00 0.00 0.00 1.94
1878 3534 8.342634 CCGTCCCATAATATAAGAGTGTTTTTG 58.657 37.037 0.00 0.00 0.00 2.44
1879 3535 9.104965 CGTCCCATAATATAAGAGTGTTTTTGA 57.895 33.333 0.00 0.00 0.00 2.69
1881 3537 9.967451 TCCCATAATATAAGAGTGTTTTTGACA 57.033 29.630 0.00 0.00 35.42 3.58
1896 3552 8.330466 TGTTTTTGACACTACACTATTATGGG 57.670 34.615 0.00 0.00 32.00 4.00
1897 3553 8.158132 TGTTTTTGACACTACACTATTATGGGA 58.842 33.333 0.00 0.00 32.00 4.37
1898 3554 9.174166 GTTTTTGACACTACACTATTATGGGAT 57.826 33.333 0.00 0.00 0.00 3.85
1899 3555 8.731275 TTTTGACACTACACTATTATGGGATG 57.269 34.615 0.00 0.00 0.00 3.51
1900 3556 6.419484 TGACACTACACTATTATGGGATGG 57.581 41.667 0.00 0.00 0.00 3.51
1901 3557 6.140377 TGACACTACACTATTATGGGATGGA 58.860 40.000 0.00 0.00 0.00 3.41
1902 3558 6.267699 TGACACTACACTATTATGGGATGGAG 59.732 42.308 0.00 0.00 0.00 3.86
1903 3559 5.544176 ACACTACACTATTATGGGATGGAGG 59.456 44.000 0.00 0.00 0.00 4.30
1904 3560 5.046304 CACTACACTATTATGGGATGGAGGG 60.046 48.000 0.00 0.00 0.00 4.30
2283 5513 0.324738 TGCCTCCTCCTCGATTGAGT 60.325 55.000 9.19 0.00 40.85 3.41
2333 5563 3.504863 GTTGTCGAAGATGCATGCATTT 58.495 40.909 32.60 25.19 40.67 2.32
2377 5607 2.417379 CGGTGAGGATGACAATCGAGTT 60.417 50.000 0.00 0.00 33.18 3.01
2419 5649 1.152881 GGGGTAGCTTCCATGCCAG 60.153 63.158 11.91 0.00 0.00 4.85
2430 5660 2.034879 CATGCCAGACGACCACCAC 61.035 63.158 0.00 0.00 0.00 4.16
2441 5671 0.680061 GACCACCACTCGAAGAAGGT 59.320 55.000 0.00 0.00 44.31 3.50
2476 5706 3.834231 GGGCATAACTGATGGGCATTATT 59.166 43.478 0.00 0.00 35.91 1.40
2484 5714 7.658525 AACTGATGGGCATTATTTATGTGAA 57.341 32.000 0.00 0.00 36.57 3.18
2495 5725 9.120538 GCATTATTTATGTGAAGAGGACCTAAA 57.879 33.333 0.00 0.00 36.57 1.85
2505 5735 6.645827 GTGAAGAGGACCTAAACTACTTTGAC 59.354 42.308 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.850935 TGTCCCACTATTACTCCTATAAAGG 57.149 40.000 0.00 0.00 45.21 3.11
8 9 9.895138 GTTTTGTCCCACTATTACTCCTATAAA 57.105 33.333 0.00 0.00 0.00 1.40
9 10 9.049050 TGTTTTGTCCCACTATTACTCCTATAA 57.951 33.333 0.00 0.00 0.00 0.98
10 11 8.480501 GTGTTTTGTCCCACTATTACTCCTATA 58.519 37.037 0.00 0.00 0.00 1.31
11 12 7.182206 AGTGTTTTGTCCCACTATTACTCCTAT 59.818 37.037 0.00 0.00 40.03 2.57
12 13 6.499350 AGTGTTTTGTCCCACTATTACTCCTA 59.501 38.462 0.00 0.00 40.03 2.94
13 14 5.309806 AGTGTTTTGTCCCACTATTACTCCT 59.690 40.000 0.00 0.00 40.03 3.69
14 15 5.411669 CAGTGTTTTGTCCCACTATTACTCC 59.588 44.000 0.00 0.00 39.83 3.85
15 16 6.228258 TCAGTGTTTTGTCCCACTATTACTC 58.772 40.000 0.00 0.00 39.83 2.59
16 17 6.182507 TCAGTGTTTTGTCCCACTATTACT 57.817 37.500 0.00 0.00 39.83 2.24
17 18 6.261381 TGTTCAGTGTTTTGTCCCACTATTAC 59.739 38.462 0.00 0.00 39.83 1.89
18 19 6.358178 TGTTCAGTGTTTTGTCCCACTATTA 58.642 36.000 0.00 0.00 39.83 0.98
19 20 5.197451 TGTTCAGTGTTTTGTCCCACTATT 58.803 37.500 0.00 0.00 39.83 1.73
20 21 4.787551 TGTTCAGTGTTTTGTCCCACTAT 58.212 39.130 0.00 0.00 39.83 2.12
21 22 4.080807 TCTGTTCAGTGTTTTGTCCCACTA 60.081 41.667 0.00 0.00 39.83 2.74
22 23 3.016736 CTGTTCAGTGTTTTGTCCCACT 58.983 45.455 0.00 0.00 42.47 4.00
23 24 3.013921 TCTGTTCAGTGTTTTGTCCCAC 58.986 45.455 0.00 0.00 0.00 4.61
24 25 3.358111 TCTGTTCAGTGTTTTGTCCCA 57.642 42.857 0.00 0.00 0.00 4.37
25 26 3.694566 AGTTCTGTTCAGTGTTTTGTCCC 59.305 43.478 0.00 0.00 0.00 4.46
26 27 4.965119 AGTTCTGTTCAGTGTTTTGTCC 57.035 40.909 0.00 0.00 0.00 4.02
27 28 7.270579 GTGTAAAGTTCTGTTCAGTGTTTTGTC 59.729 37.037 0.00 0.76 0.00 3.18
28 29 7.081976 GTGTAAAGTTCTGTTCAGTGTTTTGT 58.918 34.615 0.00 0.00 0.00 2.83
29 30 7.060633 GTGTGTAAAGTTCTGTTCAGTGTTTTG 59.939 37.037 0.00 0.00 0.00 2.44
30 31 7.081976 GTGTGTAAAGTTCTGTTCAGTGTTTT 58.918 34.615 0.00 2.82 0.00 2.43
31 32 6.205853 TGTGTGTAAAGTTCTGTTCAGTGTTT 59.794 34.615 0.00 2.20 0.00 2.83
32 33 5.703592 TGTGTGTAAAGTTCTGTTCAGTGTT 59.296 36.000 0.00 0.00 0.00 3.32
33 34 5.242434 TGTGTGTAAAGTTCTGTTCAGTGT 58.758 37.500 0.00 0.00 0.00 3.55
34 35 5.794687 TGTGTGTAAAGTTCTGTTCAGTG 57.205 39.130 0.00 0.00 0.00 3.66
35 36 6.200286 CGTATGTGTGTAAAGTTCTGTTCAGT 59.800 38.462 0.00 0.00 0.00 3.41
36 37 6.419710 TCGTATGTGTGTAAAGTTCTGTTCAG 59.580 38.462 0.00 0.00 0.00 3.02
37 38 6.274579 TCGTATGTGTGTAAAGTTCTGTTCA 58.725 36.000 0.00 0.00 0.00 3.18
38 39 6.758593 TCGTATGTGTGTAAAGTTCTGTTC 57.241 37.500 0.00 0.00 0.00 3.18
39 40 6.089016 CGATCGTATGTGTGTAAAGTTCTGTT 59.911 38.462 7.03 0.00 0.00 3.16
40 41 5.571741 CGATCGTATGTGTGTAAAGTTCTGT 59.428 40.000 7.03 0.00 0.00 3.41
41 42 5.571741 ACGATCGTATGTGTGTAAAGTTCTG 59.428 40.000 21.32 0.00 0.00 3.02
42 43 5.706916 ACGATCGTATGTGTGTAAAGTTCT 58.293 37.500 21.32 0.00 0.00 3.01
43 44 6.195983 CCTACGATCGTATGTGTGTAAAGTTC 59.804 42.308 26.95 0.00 0.00 3.01
44 45 6.032094 CCTACGATCGTATGTGTGTAAAGTT 58.968 40.000 26.95 0.00 0.00 2.66
45 46 5.355071 TCCTACGATCGTATGTGTGTAAAGT 59.645 40.000 26.95 0.00 0.00 2.66
46 47 5.813717 TCCTACGATCGTATGTGTGTAAAG 58.186 41.667 26.95 13.50 0.00 1.85
47 48 5.816449 TCCTACGATCGTATGTGTGTAAA 57.184 39.130 26.95 4.17 0.00 2.01
48 49 5.816449 TTCCTACGATCGTATGTGTGTAA 57.184 39.130 26.95 11.87 0.00 2.41
49 50 5.816449 TTTCCTACGATCGTATGTGTGTA 57.184 39.130 26.95 5.68 0.00 2.90
50 51 4.707030 TTTCCTACGATCGTATGTGTGT 57.293 40.909 26.95 1.98 0.00 3.72
51 52 5.346551 TGTTTTTCCTACGATCGTATGTGTG 59.653 40.000 26.95 15.19 0.00 3.82
52 53 5.472148 TGTTTTTCCTACGATCGTATGTGT 58.528 37.500 26.95 3.54 0.00 3.72
53 54 6.583912 ATGTTTTTCCTACGATCGTATGTG 57.416 37.500 26.95 18.07 0.00 3.21
54 55 7.760794 TGTTATGTTTTTCCTACGATCGTATGT 59.239 33.333 26.95 9.94 0.00 2.29
55 56 8.054236 GTGTTATGTTTTTCCTACGATCGTATG 58.946 37.037 26.95 23.46 0.00 2.39
56 57 7.977853 AGTGTTATGTTTTTCCTACGATCGTAT 59.022 33.333 26.95 13.18 0.00 3.06
57 58 7.315142 AGTGTTATGTTTTTCCTACGATCGTA 58.685 34.615 25.37 25.37 0.00 3.43
58 59 6.161381 AGTGTTATGTTTTTCCTACGATCGT 58.839 36.000 25.94 25.94 0.00 3.73
59 60 6.642683 AGTGTTATGTTTTTCCTACGATCG 57.357 37.500 14.88 14.88 0.00 3.69
62 63 8.231837 GCAAATAGTGTTATGTTTTTCCTACGA 58.768 33.333 0.00 0.00 0.00 3.43
63 64 8.018520 TGCAAATAGTGTTATGTTTTTCCTACG 58.981 33.333 0.00 0.00 0.00 3.51
64 65 9.685828 TTGCAAATAGTGTTATGTTTTTCCTAC 57.314 29.630 0.00 0.00 0.00 3.18
66 67 9.606631 TTTTGCAAATAGTGTTATGTTTTTCCT 57.393 25.926 13.65 0.00 0.00 3.36
94 95 9.806203 GTAAGTGGGTAAAAGTGTTATGTTTTT 57.194 29.630 0.00 0.00 0.00 1.94
95 96 8.968969 TGTAAGTGGGTAAAAGTGTTATGTTTT 58.031 29.630 0.00 0.00 0.00 2.43
96 97 8.522542 TGTAAGTGGGTAAAAGTGTTATGTTT 57.477 30.769 0.00 0.00 0.00 2.83
97 98 8.700439 ATGTAAGTGGGTAAAAGTGTTATGTT 57.300 30.769 0.00 0.00 0.00 2.71
98 99 9.796180 TTATGTAAGTGGGTAAAAGTGTTATGT 57.204 29.630 0.00 0.00 0.00 2.29
102 103 9.357161 TCATTTATGTAAGTGGGTAAAAGTGTT 57.643 29.630 0.00 0.00 0.00 3.32
103 104 8.927675 TCATTTATGTAAGTGGGTAAAAGTGT 57.072 30.769 0.00 0.00 0.00 3.55
108 109 9.968870 GTGTTTTCATTTATGTAAGTGGGTAAA 57.031 29.630 0.00 0.00 0.00 2.01
109 110 9.357161 AGTGTTTTCATTTATGTAAGTGGGTAA 57.643 29.630 0.00 0.00 0.00 2.85
110 111 8.927675 AGTGTTTTCATTTATGTAAGTGGGTA 57.072 30.769 0.00 0.00 0.00 3.69
111 112 7.833285 AGTGTTTTCATTTATGTAAGTGGGT 57.167 32.000 0.00 0.00 0.00 4.51
123 124 9.489084 GCCCTTAGATTTTTAGTGTTTTCATTT 57.511 29.630 0.00 0.00 0.00 2.32
124 125 8.646900 TGCCCTTAGATTTTTAGTGTTTTCATT 58.353 29.630 0.00 0.00 0.00 2.57
125 126 8.189119 TGCCCTTAGATTTTTAGTGTTTTCAT 57.811 30.769 0.00 0.00 0.00 2.57
126 127 7.589958 TGCCCTTAGATTTTTAGTGTTTTCA 57.410 32.000 0.00 0.00 0.00 2.69
127 128 7.545615 CCATGCCCTTAGATTTTTAGTGTTTTC 59.454 37.037 0.00 0.00 0.00 2.29
128 129 7.016170 ACCATGCCCTTAGATTTTTAGTGTTTT 59.984 33.333 0.00 0.00 0.00 2.43
129 130 6.496911 ACCATGCCCTTAGATTTTTAGTGTTT 59.503 34.615 0.00 0.00 0.00 2.83
130 131 6.016555 ACCATGCCCTTAGATTTTTAGTGTT 58.983 36.000 0.00 0.00 0.00 3.32
131 132 5.580022 ACCATGCCCTTAGATTTTTAGTGT 58.420 37.500 0.00 0.00 0.00 3.55
132 133 7.639113 TTACCATGCCCTTAGATTTTTAGTG 57.361 36.000 0.00 0.00 0.00 2.74
133 134 8.838649 AATTACCATGCCCTTAGATTTTTAGT 57.161 30.769 0.00 0.00 0.00 2.24
141 142 9.515226 GTCAATATAAATTACCATGCCCTTAGA 57.485 33.333 0.00 0.00 0.00 2.10
142 143 9.295825 TGTCAATATAAATTACCATGCCCTTAG 57.704 33.333 0.00 0.00 0.00 2.18
143 144 9.073475 GTGTCAATATAAATTACCATGCCCTTA 57.927 33.333 0.00 0.00 0.00 2.69
144 145 7.255451 CGTGTCAATATAAATTACCATGCCCTT 60.255 37.037 0.00 0.00 0.00 3.95
145 146 6.206634 CGTGTCAATATAAATTACCATGCCCT 59.793 38.462 0.00 0.00 0.00 5.19
146 147 6.205853 TCGTGTCAATATAAATTACCATGCCC 59.794 38.462 0.00 0.00 0.00 5.36
147 148 7.197071 TCGTGTCAATATAAATTACCATGCC 57.803 36.000 0.00 0.00 0.00 4.40
148 149 8.503196 TCATCGTGTCAATATAAATTACCATGC 58.497 33.333 0.00 0.00 0.00 4.06
151 152 9.554395 ACATCATCGTGTCAATATAAATTACCA 57.446 29.630 0.00 0.00 0.00 3.25
165 166 6.738200 CACACTAAATTTGACATCATCGTGTC 59.262 38.462 0.00 0.30 46.75 3.67
166 167 6.602179 CACACTAAATTTGACATCATCGTGT 58.398 36.000 0.00 0.00 34.39 4.49
167 168 5.509272 GCACACTAAATTTGACATCATCGTG 59.491 40.000 0.00 0.00 0.00 4.35
168 169 5.181056 TGCACACTAAATTTGACATCATCGT 59.819 36.000 0.00 0.00 0.00 3.73
169 170 5.630061 TGCACACTAAATTTGACATCATCG 58.370 37.500 0.00 0.00 0.00 3.84
170 171 7.381948 TGTTTGCACACTAAATTTGACATCATC 59.618 33.333 4.37 0.00 0.00 2.92
171 172 7.208777 TGTTTGCACACTAAATTTGACATCAT 58.791 30.769 4.37 0.00 0.00 2.45
172 173 6.567959 TGTTTGCACACTAAATTTGACATCA 58.432 32.000 4.37 0.00 0.00 3.07
173 174 7.381948 TCATGTTTGCACACTAAATTTGACATC 59.618 33.333 4.37 0.00 35.03 3.06
174 175 7.169645 GTCATGTTTGCACACTAAATTTGACAT 59.830 33.333 4.37 0.00 35.03 3.06
175 176 6.475076 GTCATGTTTGCACACTAAATTTGACA 59.525 34.615 4.37 0.00 35.03 3.58
176 177 6.475076 TGTCATGTTTGCACACTAAATTTGAC 59.525 34.615 4.37 8.16 35.03 3.18
177 178 6.567959 TGTCATGTTTGCACACTAAATTTGA 58.432 32.000 4.37 0.00 35.03 2.69
178 179 6.825284 TGTCATGTTTGCACACTAAATTTG 57.175 33.333 4.37 0.00 35.03 2.32
179 180 8.436046 AATTGTCATGTTTGCACACTAAATTT 57.564 26.923 4.37 0.00 35.03 1.82
180 181 8.436046 AAATTGTCATGTTTGCACACTAAATT 57.564 26.923 4.37 1.48 35.03 1.82
181 182 8.436046 AAAATTGTCATGTTTGCACACTAAAT 57.564 26.923 4.37 0.00 35.03 1.40
182 183 7.763528 AGAAAATTGTCATGTTTGCACACTAAA 59.236 29.630 4.37 0.00 35.03 1.85
183 184 7.222417 CAGAAAATTGTCATGTTTGCACACTAA 59.778 33.333 4.37 0.00 35.03 2.24
184 185 6.696583 CAGAAAATTGTCATGTTTGCACACTA 59.303 34.615 4.37 0.00 35.03 2.74
185 186 5.521010 CAGAAAATTGTCATGTTTGCACACT 59.479 36.000 4.37 0.00 35.03 3.55
186 187 5.519566 TCAGAAAATTGTCATGTTTGCACAC 59.480 36.000 0.00 0.00 35.03 3.82
187 188 5.519566 GTCAGAAAATTGTCATGTTTGCACA 59.480 36.000 0.00 0.00 37.31 4.57
188 189 5.519566 TGTCAGAAAATTGTCATGTTTGCAC 59.480 36.000 0.00 0.00 0.00 4.57
189 190 5.658468 TGTCAGAAAATTGTCATGTTTGCA 58.342 33.333 0.00 0.00 0.00 4.08
190 191 6.586868 TTGTCAGAAAATTGTCATGTTTGC 57.413 33.333 0.00 0.00 0.00 3.68
197 198 9.695526 CCTTCATTTATTGTCAGAAAATTGTCA 57.304 29.630 0.00 0.00 0.00 3.58
198 199 9.912634 TCCTTCATTTATTGTCAGAAAATTGTC 57.087 29.630 0.00 0.00 0.00 3.18
199 200 9.696917 GTCCTTCATTTATTGTCAGAAAATTGT 57.303 29.630 0.00 0.00 0.00 2.71
200 201 9.143631 GGTCCTTCATTTATTGTCAGAAAATTG 57.856 33.333 0.00 0.00 0.00 2.32
201 202 8.314021 GGGTCCTTCATTTATTGTCAGAAAATT 58.686 33.333 0.00 0.00 0.00 1.82
202 203 7.675619 AGGGTCCTTCATTTATTGTCAGAAAAT 59.324 33.333 0.00 0.00 0.00 1.82
203 204 7.010160 AGGGTCCTTCATTTATTGTCAGAAAA 58.990 34.615 0.00 0.00 0.00 2.29
204 205 6.552008 AGGGTCCTTCATTTATTGTCAGAAA 58.448 36.000 0.00 0.00 0.00 2.52
205 206 6.139679 AGGGTCCTTCATTTATTGTCAGAA 57.860 37.500 0.00 0.00 0.00 3.02
206 207 5.779241 AGGGTCCTTCATTTATTGTCAGA 57.221 39.130 0.00 0.00 0.00 3.27
207 208 9.627123 TTATTAGGGTCCTTCATTTATTGTCAG 57.373 33.333 0.00 0.00 0.00 3.51
208 209 9.627123 CTTATTAGGGTCCTTCATTTATTGTCA 57.373 33.333 0.00 0.00 0.00 3.58
209 210 9.628500 ACTTATTAGGGTCCTTCATTTATTGTC 57.372 33.333 0.00 0.00 0.00 3.18
210 211 9.408648 CACTTATTAGGGTCCTTCATTTATTGT 57.591 33.333 0.00 0.00 0.00 2.71
211 212 9.408648 ACACTTATTAGGGTCCTTCATTTATTG 57.591 33.333 0.00 0.00 30.04 1.90
224 225 5.499004 ACATGTGTGACACTTATTAGGGT 57.501 39.130 17.47 1.10 41.95 4.34
236 237 9.510490 GTACTGTGTTTGTACCACATGTGTGAC 62.510 44.444 23.79 19.76 45.30 3.67
237 238 7.615394 GTACTGTGTTTGTACCACATGTGTGA 61.615 42.308 23.79 8.86 45.30 3.58
238 239 3.376859 ACTGTGTTTGTACCACATGTGTG 59.623 43.478 23.79 17.05 41.64 3.82
239 240 3.616219 ACTGTGTTTGTACCACATGTGT 58.384 40.909 23.79 14.29 41.64 3.72
240 241 4.572795 TGTACTGTGTTTGTACCACATGTG 59.427 41.667 19.31 19.31 41.64 3.21
241 242 4.771903 TGTACTGTGTTTGTACCACATGT 58.228 39.130 4.23 0.00 41.64 3.21
242 243 5.295787 AGTTGTACTGTGTTTGTACCACATG 59.704 40.000 4.23 0.00 41.64 3.21
243 244 5.433526 AGTTGTACTGTGTTTGTACCACAT 58.566 37.500 4.23 0.00 41.64 3.21
244 245 4.834534 AGTTGTACTGTGTTTGTACCACA 58.165 39.130 9.69 3.82 38.33 4.17
245 246 4.271776 GGAGTTGTACTGTGTTTGTACCAC 59.728 45.833 0.00 0.00 39.42 4.16
246 247 4.444536 GGAGTTGTACTGTGTTTGTACCA 58.555 43.478 0.00 0.00 39.42 3.25
247 248 3.492011 CGGAGTTGTACTGTGTTTGTACC 59.508 47.826 0.00 0.00 39.42 3.34
248 249 4.362279 TCGGAGTTGTACTGTGTTTGTAC 58.638 43.478 0.00 0.00 40.27 2.90
249 250 4.652421 TCGGAGTTGTACTGTGTTTGTA 57.348 40.909 0.00 0.00 0.00 2.41
250 251 3.530265 TCGGAGTTGTACTGTGTTTGT 57.470 42.857 0.00 0.00 0.00 2.83
251 252 5.418310 AAATCGGAGTTGTACTGTGTTTG 57.582 39.130 0.00 0.00 0.00 2.93
252 253 6.445357 AAAAATCGGAGTTGTACTGTGTTT 57.555 33.333 0.00 0.00 0.00 2.83
275 276 5.617308 CGCGGTACTAAACTTGCCATAAAAA 60.617 40.000 0.00 0.00 0.00 1.94
276 277 4.142859 CGCGGTACTAAACTTGCCATAAAA 60.143 41.667 0.00 0.00 0.00 1.52
277 278 3.371591 CGCGGTACTAAACTTGCCATAAA 59.628 43.478 0.00 0.00 0.00 1.40
278 279 2.931325 CGCGGTACTAAACTTGCCATAA 59.069 45.455 0.00 0.00 0.00 1.90
279 280 2.166050 TCGCGGTACTAAACTTGCCATA 59.834 45.455 6.13 0.00 0.00 2.74
280 281 1.066716 TCGCGGTACTAAACTTGCCAT 60.067 47.619 6.13 0.00 0.00 4.40
281 282 0.317799 TCGCGGTACTAAACTTGCCA 59.682 50.000 6.13 0.00 0.00 4.92
282 283 0.997196 CTCGCGGTACTAAACTTGCC 59.003 55.000 6.13 0.00 0.00 4.52
283 284 0.997196 CCTCGCGGTACTAAACTTGC 59.003 55.000 6.13 0.00 0.00 4.01
284 285 2.642139 TCCTCGCGGTACTAAACTTG 57.358 50.000 6.13 0.00 0.00 3.16
285 286 2.159142 CCATCCTCGCGGTACTAAACTT 60.159 50.000 6.13 0.00 0.00 2.66
286 287 1.407979 CCATCCTCGCGGTACTAAACT 59.592 52.381 6.13 0.00 0.00 2.66
287 288 1.849097 CCATCCTCGCGGTACTAAAC 58.151 55.000 6.13 0.00 0.00 2.01
288 289 0.103572 GCCATCCTCGCGGTACTAAA 59.896 55.000 6.13 0.00 0.00 1.85
289 290 1.038681 TGCCATCCTCGCGGTACTAA 61.039 55.000 6.13 0.00 0.00 2.24
290 291 1.038681 TTGCCATCCTCGCGGTACTA 61.039 55.000 6.13 0.00 0.00 1.82
291 292 1.686325 ATTGCCATCCTCGCGGTACT 61.686 55.000 6.13 0.00 0.00 2.73
292 293 0.814010 AATTGCCATCCTCGCGGTAC 60.814 55.000 6.13 0.00 0.00 3.34
293 294 0.107410 AAATTGCCATCCTCGCGGTA 60.107 50.000 6.13 0.00 0.00 4.02
294 295 0.107410 TAAATTGCCATCCTCGCGGT 60.107 50.000 6.13 0.00 0.00 5.68
295 296 1.238439 ATAAATTGCCATCCTCGCGG 58.762 50.000 6.13 0.00 0.00 6.46
296 297 3.354089 AAATAAATTGCCATCCTCGCG 57.646 42.857 0.00 0.00 0.00 5.87
297 298 3.730715 CGAAAATAAATTGCCATCCTCGC 59.269 43.478 0.00 0.00 0.00 5.03
298 299 4.036262 TCCGAAAATAAATTGCCATCCTCG 59.964 41.667 0.00 0.00 0.00 4.63
299 300 5.299279 TCTCCGAAAATAAATTGCCATCCTC 59.701 40.000 0.00 0.00 0.00 3.71
300 301 5.200483 TCTCCGAAAATAAATTGCCATCCT 58.800 37.500 0.00 0.00 0.00 3.24
301 302 5.514274 TCTCCGAAAATAAATTGCCATCC 57.486 39.130 0.00 0.00 0.00 3.51
302 303 5.922544 CCATCTCCGAAAATAAATTGCCATC 59.077 40.000 0.00 0.00 0.00 3.51
303 304 5.363580 ACCATCTCCGAAAATAAATTGCCAT 59.636 36.000 0.00 0.00 0.00 4.40
304 305 4.709397 ACCATCTCCGAAAATAAATTGCCA 59.291 37.500 0.00 0.00 0.00 4.92
305 306 5.262588 ACCATCTCCGAAAATAAATTGCC 57.737 39.130 0.00 0.00 0.00 4.52
306 307 7.480810 ACTTACCATCTCCGAAAATAAATTGC 58.519 34.615 0.00 0.00 0.00 3.56
307 308 9.855021 AAACTTACCATCTCCGAAAATAAATTG 57.145 29.630 0.00 0.00 0.00 2.32
309 310 9.238368 TGAAACTTACCATCTCCGAAAATAAAT 57.762 29.630 0.00 0.00 0.00 1.40
310 311 8.624367 TGAAACTTACCATCTCCGAAAATAAA 57.376 30.769 0.00 0.00 0.00 1.40
311 312 8.624367 TTGAAACTTACCATCTCCGAAAATAA 57.376 30.769 0.00 0.00 0.00 1.40
312 313 8.801882 ATTGAAACTTACCATCTCCGAAAATA 57.198 30.769 0.00 0.00 0.00 1.40
313 314 7.703058 ATTGAAACTTACCATCTCCGAAAAT 57.297 32.000 0.00 0.00 0.00 1.82
314 315 7.519032 AATTGAAACTTACCATCTCCGAAAA 57.481 32.000 0.00 0.00 0.00 2.29
315 316 7.519032 AAATTGAAACTTACCATCTCCGAAA 57.481 32.000 0.00 0.00 0.00 3.46
316 317 7.519032 AAAATTGAAACTTACCATCTCCGAA 57.481 32.000 0.00 0.00 0.00 4.30
317 318 7.519032 AAAAATTGAAACTTACCATCTCCGA 57.481 32.000 0.00 0.00 0.00 4.55
378 379 0.185175 ACTCCGGCCCTGAAGTTTTT 59.815 50.000 0.00 0.00 0.00 1.94
379 380 0.537371 CACTCCGGCCCTGAAGTTTT 60.537 55.000 0.00 0.00 0.00 2.43
380 381 1.073199 CACTCCGGCCCTGAAGTTT 59.927 57.895 0.00 0.00 0.00 2.66
381 382 2.750350 CACTCCGGCCCTGAAGTT 59.250 61.111 0.00 0.00 0.00 2.66
382 383 3.322466 CCACTCCGGCCCTGAAGT 61.322 66.667 0.00 0.00 0.00 3.01
383 384 2.804828 GAACCACTCCGGCCCTGAAG 62.805 65.000 0.00 0.00 39.03 3.02
384 385 2.852075 AACCACTCCGGCCCTGAA 60.852 61.111 0.00 0.00 39.03 3.02
385 386 3.319198 GAACCACTCCGGCCCTGA 61.319 66.667 0.00 0.00 39.03 3.86
386 387 4.760047 CGAACCACTCCGGCCCTG 62.760 72.222 0.00 0.00 39.03 4.45
387 388 3.892104 TACGAACCACTCCGGCCCT 62.892 63.158 0.00 0.00 39.03 5.19
388 389 3.384532 TACGAACCACTCCGGCCC 61.385 66.667 0.00 0.00 39.03 5.80
389 390 2.125793 GTACGAACCACTCCGGCC 60.126 66.667 0.00 0.00 39.03 6.13
390 391 2.125793 GGTACGAACCACTCCGGC 60.126 66.667 0.00 0.00 45.98 6.13
403 404 6.230849 TGATAAATGTCACACGTTTGGTAC 57.769 37.500 1.18 0.00 37.80 3.34
404 405 7.441890 AATGATAAATGTCACACGTTTGGTA 57.558 32.000 1.18 0.00 37.80 3.25
405 406 5.957842 ATGATAAATGTCACACGTTTGGT 57.042 34.783 1.18 0.00 37.80 3.67
406 407 6.089283 CCAAATGATAAATGTCACACGTTTGG 59.911 38.462 12.34 12.34 43.14 3.28
407 408 6.089283 CCCAAATGATAAATGTCACACGTTTG 59.911 38.462 0.00 0.00 37.80 2.93
408 409 6.015856 TCCCAAATGATAAATGTCACACGTTT 60.016 34.615 0.00 0.00 40.18 3.60
409 410 5.475220 TCCCAAATGATAAATGTCACACGTT 59.525 36.000 0.00 0.00 0.00 3.99
410 411 5.007034 TCCCAAATGATAAATGTCACACGT 58.993 37.500 0.00 0.00 0.00 4.49
411 412 5.559427 TCCCAAATGATAAATGTCACACG 57.441 39.130 0.00 0.00 0.00 4.49
412 413 8.776376 ATTTTCCCAAATGATAAATGTCACAC 57.224 30.769 0.00 0.00 30.89 3.82
421 422 8.257306 GCCTCAGTTTATTTTCCCAAATGATAA 58.743 33.333 0.00 0.00 34.29 1.75
422 423 7.416213 CGCCTCAGTTTATTTTCCCAAATGATA 60.416 37.037 0.00 0.00 34.29 2.15
423 424 6.627953 CGCCTCAGTTTATTTTCCCAAATGAT 60.628 38.462 0.00 0.00 34.29 2.45
424 425 5.336372 CGCCTCAGTTTATTTTCCCAAATGA 60.336 40.000 0.00 0.00 34.29 2.57
425 426 4.864247 CGCCTCAGTTTATTTTCCCAAATG 59.136 41.667 0.00 0.00 34.29 2.32
426 427 4.770010 TCGCCTCAGTTTATTTTCCCAAAT 59.230 37.500 0.00 0.00 36.52 2.32
427 428 4.145807 TCGCCTCAGTTTATTTTCCCAAA 58.854 39.130 0.00 0.00 0.00 3.28
428 429 3.757270 TCGCCTCAGTTTATTTTCCCAA 58.243 40.909 0.00 0.00 0.00 4.12
429 430 3.426787 TCGCCTCAGTTTATTTTCCCA 57.573 42.857 0.00 0.00 0.00 4.37
430 431 4.983671 ATTCGCCTCAGTTTATTTTCCC 57.016 40.909 0.00 0.00 0.00 3.97
431 432 5.062183 GCAAATTCGCCTCAGTTTATTTTCC 59.938 40.000 0.00 0.00 0.00 3.13
432 433 6.082730 GCAAATTCGCCTCAGTTTATTTTC 57.917 37.500 0.00 0.00 0.00 2.29
446 447 0.452784 GACGAGTGTGGCAAATTCGC 60.453 55.000 20.81 10.97 34.84 4.70
447 448 0.865111 TGACGAGTGTGGCAAATTCG 59.135 50.000 19.51 19.51 37.31 3.34
448 449 2.290641 AGTTGACGAGTGTGGCAAATTC 59.709 45.455 0.00 0.00 0.00 2.17
449 450 2.297701 AGTTGACGAGTGTGGCAAATT 58.702 42.857 0.00 0.00 0.00 1.82
450 451 1.967319 AGTTGACGAGTGTGGCAAAT 58.033 45.000 0.00 0.00 0.00 2.32
451 452 1.745232 AAGTTGACGAGTGTGGCAAA 58.255 45.000 0.00 0.00 0.00 3.68
452 453 2.605837 TAAGTTGACGAGTGTGGCAA 57.394 45.000 0.00 0.00 0.00 4.52
453 454 2.159014 AGTTAAGTTGACGAGTGTGGCA 60.159 45.455 0.00 0.00 0.00 4.92
454 455 2.480845 AGTTAAGTTGACGAGTGTGGC 58.519 47.619 0.00 0.00 0.00 5.01
455 456 3.303132 GCAAGTTAAGTTGACGAGTGTGG 60.303 47.826 24.16 0.00 0.00 4.17
456 457 3.303132 GGCAAGTTAAGTTGACGAGTGTG 60.303 47.826 24.16 0.00 0.00 3.82
457 458 2.870411 GGCAAGTTAAGTTGACGAGTGT 59.130 45.455 24.16 0.00 0.00 3.55
458 459 2.869801 TGGCAAGTTAAGTTGACGAGTG 59.130 45.455 24.16 0.00 38.41 3.51
459 460 3.188159 TGGCAAGTTAAGTTGACGAGT 57.812 42.857 24.16 0.00 38.41 4.18
460 461 4.452455 AGAATGGCAAGTTAAGTTGACGAG 59.548 41.667 24.16 0.55 38.41 4.18
461 462 4.385825 AGAATGGCAAGTTAAGTTGACGA 58.614 39.130 24.16 13.61 38.41 4.20
462 463 4.452455 AGAGAATGGCAAGTTAAGTTGACG 59.548 41.667 24.16 1.25 38.41 4.35
463 464 5.948992 AGAGAATGGCAAGTTAAGTTGAC 57.051 39.130 24.16 22.23 35.83 3.18
464 465 6.995686 TGTTAGAGAATGGCAAGTTAAGTTGA 59.004 34.615 24.16 7.00 0.00 3.18
465 466 7.202016 TGTTAGAGAATGGCAAGTTAAGTTG 57.798 36.000 17.18 17.18 0.00 3.16
466 467 7.817418 TTGTTAGAGAATGGCAAGTTAAGTT 57.183 32.000 0.00 0.00 0.00 2.66
467 468 9.686683 ATATTGTTAGAGAATGGCAAGTTAAGT 57.313 29.630 0.00 0.00 0.00 2.24
474 475 9.748708 GCAAATTATATTGTTAGAGAATGGCAA 57.251 29.630 0.00 0.00 32.80 4.52
475 476 8.359642 GGCAAATTATATTGTTAGAGAATGGCA 58.640 33.333 0.00 0.00 32.80 4.92
476 477 8.359642 TGGCAAATTATATTGTTAGAGAATGGC 58.640 33.333 0.00 0.00 32.80 4.40
494 495 9.250624 CAAATCAAACATTTTTCATGGCAAATT 57.749 25.926 0.00 0.00 0.00 1.82
495 496 7.382759 GCAAATCAAACATTTTTCATGGCAAAT 59.617 29.630 0.00 0.00 0.00 2.32
496 497 6.696148 GCAAATCAAACATTTTTCATGGCAAA 59.304 30.769 0.00 0.00 0.00 3.68
497 498 6.039493 AGCAAATCAAACATTTTTCATGGCAA 59.961 30.769 0.00 0.00 0.00 4.52
498 499 5.531659 AGCAAATCAAACATTTTTCATGGCA 59.468 32.000 0.00 0.00 0.00 4.92
499 500 6.004408 AGCAAATCAAACATTTTTCATGGC 57.996 33.333 0.00 0.00 0.00 4.40
500 501 7.228840 CGTAGCAAATCAAACATTTTTCATGG 58.771 34.615 0.00 0.00 0.00 3.66
501 502 7.095691 ACCGTAGCAAATCAAACATTTTTCATG 60.096 33.333 0.00 0.00 0.00 3.07
502 503 6.928492 ACCGTAGCAAATCAAACATTTTTCAT 59.072 30.769 0.00 0.00 0.00 2.57
503 504 6.276847 ACCGTAGCAAATCAAACATTTTTCA 58.723 32.000 0.00 0.00 0.00 2.69
504 505 6.763303 ACCGTAGCAAATCAAACATTTTTC 57.237 33.333 0.00 0.00 0.00 2.29
505 506 7.203910 TGTACCGTAGCAAATCAAACATTTTT 58.796 30.769 0.00 0.00 0.00 1.94
506 507 6.740110 TGTACCGTAGCAAATCAAACATTTT 58.260 32.000 0.00 0.00 0.00 1.82
507 508 6.320494 TGTACCGTAGCAAATCAAACATTT 57.680 33.333 0.00 0.00 0.00 2.32
508 509 5.950758 TGTACCGTAGCAAATCAAACATT 57.049 34.783 0.00 0.00 0.00 2.71
509 510 5.950758 TTGTACCGTAGCAAATCAAACAT 57.049 34.783 0.00 0.00 0.00 2.71
510 511 5.752892 TTTGTACCGTAGCAAATCAAACA 57.247 34.783 0.00 0.00 30.68 2.83
511 512 7.081976 AGATTTTGTACCGTAGCAAATCAAAC 58.918 34.615 17.27 0.64 34.99 2.93
512 513 7.041030 TGAGATTTTGTACCGTAGCAAATCAAA 60.041 33.333 17.27 5.78 34.99 2.69
513 514 6.428465 TGAGATTTTGTACCGTAGCAAATCAA 59.572 34.615 17.27 8.24 34.99 2.57
514 515 5.935206 TGAGATTTTGTACCGTAGCAAATCA 59.065 36.000 17.27 11.16 34.99 2.57
515 516 6.248631 GTGAGATTTTGTACCGTAGCAAATC 58.751 40.000 11.39 11.39 34.99 2.17
516 517 5.163893 CGTGAGATTTTGTACCGTAGCAAAT 60.164 40.000 0.00 2.48 34.99 2.32
517 518 4.150980 CGTGAGATTTTGTACCGTAGCAAA 59.849 41.667 0.00 0.00 33.40 3.68
518 519 3.676172 CGTGAGATTTTGTACCGTAGCAA 59.324 43.478 0.00 0.00 0.00 3.91
519 520 3.247442 CGTGAGATTTTGTACCGTAGCA 58.753 45.455 0.00 0.00 0.00 3.49
520 521 3.248266 ACGTGAGATTTTGTACCGTAGC 58.752 45.455 0.00 0.00 0.00 3.58
521 522 4.322804 GTGACGTGAGATTTTGTACCGTAG 59.677 45.833 0.00 0.00 0.00 3.51
522 523 4.229096 GTGACGTGAGATTTTGTACCGTA 58.771 43.478 0.00 0.00 0.00 4.02
523 524 3.054878 GTGACGTGAGATTTTGTACCGT 58.945 45.455 0.00 0.00 0.00 4.83
524 525 3.054166 TGTGACGTGAGATTTTGTACCG 58.946 45.455 0.00 0.00 0.00 4.02
525 526 5.607119 AATGTGACGTGAGATTTTGTACC 57.393 39.130 0.00 0.00 0.00 3.34
526 527 9.901724 CTATAAATGTGACGTGAGATTTTGTAC 57.098 33.333 14.79 0.00 0.00 2.90
527 528 9.647797 ACTATAAATGTGACGTGAGATTTTGTA 57.352 29.630 14.79 8.31 0.00 2.41
528 529 8.443160 CACTATAAATGTGACGTGAGATTTTGT 58.557 33.333 14.79 9.29 37.60 2.83
529 530 7.904977 CCACTATAAATGTGACGTGAGATTTTG 59.095 37.037 14.79 7.55 37.60 2.44
530 531 7.822334 TCCACTATAAATGTGACGTGAGATTTT 59.178 33.333 14.79 6.52 37.60 1.82
531 532 7.327975 TCCACTATAAATGTGACGTGAGATTT 58.672 34.615 14.10 14.10 37.60 2.17
532 533 6.873997 TCCACTATAAATGTGACGTGAGATT 58.126 36.000 0.00 0.00 37.60 2.40
533 534 6.321435 TCTCCACTATAAATGTGACGTGAGAT 59.679 38.462 0.00 0.00 37.60 2.75
534 535 5.650703 TCTCCACTATAAATGTGACGTGAGA 59.349 40.000 0.00 0.00 37.60 3.27
535 536 5.744345 GTCTCCACTATAAATGTGACGTGAG 59.256 44.000 0.00 0.00 37.60 3.51
536 537 5.393787 GGTCTCCACTATAAATGTGACGTGA 60.394 44.000 0.00 0.00 37.60 4.35
537 538 4.804139 GGTCTCCACTATAAATGTGACGTG 59.196 45.833 0.00 0.00 37.60 4.49
538 539 4.142004 GGGTCTCCACTATAAATGTGACGT 60.142 45.833 0.00 0.00 37.60 4.34
539 540 4.369182 GGGTCTCCACTATAAATGTGACG 58.631 47.826 0.00 0.00 37.60 4.35
540 541 4.704965 GGGGTCTCCACTATAAATGTGAC 58.295 47.826 0.00 0.00 37.60 3.67
541 542 3.386726 CGGGGTCTCCACTATAAATGTGA 59.613 47.826 0.00 0.00 37.60 3.58
542 543 3.494398 CCGGGGTCTCCACTATAAATGTG 60.494 52.174 0.00 0.00 34.36 3.21
543 544 2.704065 CCGGGGTCTCCACTATAAATGT 59.296 50.000 0.00 0.00 34.36 2.71
544 545 2.550208 GCCGGGGTCTCCACTATAAATG 60.550 54.545 2.18 0.00 34.36 2.32
545 546 1.697982 GCCGGGGTCTCCACTATAAAT 59.302 52.381 2.18 0.00 34.36 1.40
546 547 1.125633 GCCGGGGTCTCCACTATAAA 58.874 55.000 2.18 0.00 34.36 1.40
547 548 0.761702 GGCCGGGGTCTCCACTATAA 60.762 60.000 2.18 0.00 34.36 0.98
548 549 1.152398 GGCCGGGGTCTCCACTATA 60.152 63.158 2.18 0.00 34.36 1.31
549 550 2.446036 GGCCGGGGTCTCCACTAT 60.446 66.667 2.18 0.00 34.36 2.12
550 551 3.248248 AAGGCCGGGGTCTCCACTA 62.248 63.158 2.18 0.00 34.36 2.74
551 552 4.658786 AAGGCCGGGGTCTCCACT 62.659 66.667 2.18 0.00 34.36 4.00
552 553 4.410400 CAAGGCCGGGGTCTCCAC 62.410 72.222 2.18 0.00 34.36 4.02
555 556 4.785453 CTGCAAGGCCGGGGTCTC 62.785 72.222 2.18 0.00 0.00 3.36
561 562 3.604667 TTTGTGCTGCAAGGCCGG 61.605 61.111 2.77 0.00 38.47 6.13
591 592 0.177604 GGAGATGTCCAGCACTCCAG 59.822 60.000 3.49 0.00 43.31 3.86
596 597 2.079925 GTTTGAGGAGATGTCCAGCAC 58.920 52.381 12.14 0.00 46.80 4.40
597 598 1.338105 CGTTTGAGGAGATGTCCAGCA 60.338 52.381 12.14 6.03 46.80 4.41
598 599 1.066858 TCGTTTGAGGAGATGTCCAGC 60.067 52.381 12.14 3.26 46.80 4.85
645 2264 7.928307 ATGTTGGATAATAAATCTGATCCGG 57.072 36.000 0.00 0.00 40.74 5.14
655 2274 9.400638 GTCGTTTGTTGAATGTTGGATAATAAA 57.599 29.630 0.00 0.00 0.00 1.40
656 2275 8.788806 AGTCGTTTGTTGAATGTTGGATAATAA 58.211 29.630 0.00 0.00 0.00 1.40
657 2276 8.233868 CAGTCGTTTGTTGAATGTTGGATAATA 58.766 33.333 0.00 0.00 0.00 0.98
696 2315 2.826738 GCCTCTCTCGGCTCTCGT 60.827 66.667 0.00 0.00 46.63 4.18
723 2342 1.376812 CAACGGTAGGGCCCACTTC 60.377 63.158 27.56 10.78 0.00 3.01
730 2349 2.670592 AAACGCCAACGGTAGGGC 60.671 61.111 12.36 12.36 39.25 5.19
830 2449 1.233919 CGATGGAGCTGATCGAGAGA 58.766 55.000 16.38 0.00 44.46 3.10
845 2464 3.067106 AGTTAAGATAATGGCGCCGATG 58.933 45.455 23.90 0.00 0.00 3.84
1192 2814 3.058160 CTTGCAAGGCTGGGTCCG 61.058 66.667 19.14 0.00 0.00 4.79
1195 2817 2.437897 CCTCTTGCAAGGCTGGGT 59.562 61.111 25.73 0.00 0.00 4.51
1417 3039 2.124570 CCCGTCCTCCTTGCATGG 60.125 66.667 12.41 12.41 0.00 3.66
1571 3196 2.205074 GATGTCACCGAGGCACTAATG 58.795 52.381 0.00 0.00 41.55 1.90
1630 3255 4.881850 AGTACGGGAAAGGCAAGATTTATG 59.118 41.667 0.00 0.00 0.00 1.90
1675 3317 2.280971 CAGATTGAACGCGTGAGAGATG 59.719 50.000 14.98 4.80 33.96 2.90
1676 3318 2.164422 TCAGATTGAACGCGTGAGAGAT 59.836 45.455 14.98 2.73 33.96 2.75
1677 3319 1.539827 TCAGATTGAACGCGTGAGAGA 59.460 47.619 14.98 1.87 33.96 3.10
1800 3454 9.431887 TCTTGAGTGTAATACTGAAAATGGTAC 57.568 33.333 0.00 0.00 40.53 3.34
1825 3481 8.643324 AGGGAGTAGTTGAGTTACATTATGATC 58.357 37.037 0.00 0.00 0.00 2.92
1845 3501 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
1846 3502 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
1847 3503 5.222484 ACTCTTATATTATGGGACGGAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
1848 3504 5.024118 ACTCTTATATTATGGGACGGAGGG 58.976 45.833 0.00 0.00 0.00 4.30
1849 3505 5.480772 ACACTCTTATATTATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
1850 3506 6.591750 ACACTCTTATATTATGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
1851 3507 6.989155 AACACTCTTATATTATGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
1852 3508 8.342634 CAAAAACACTCTTATATTATGGGACGG 58.657 37.037 0.00 0.00 0.00 4.79
1853 3509 9.104965 TCAAAAACACTCTTATATTATGGGACG 57.895 33.333 0.00 0.00 0.00 4.79
1855 3511 9.967451 TGTCAAAAACACTCTTATATTATGGGA 57.033 29.630 0.00 0.00 31.20 4.37
1871 3527 8.158132 TCCCATAATAGTGTAGTGTCAAAAACA 58.842 33.333 0.00 0.00 34.78 2.83
1872 3528 8.556213 TCCCATAATAGTGTAGTGTCAAAAAC 57.444 34.615 0.00 0.00 0.00 2.43
1873 3529 9.173021 CATCCCATAATAGTGTAGTGTCAAAAA 57.827 33.333 0.00 0.00 0.00 1.94
1874 3530 7.773224 CCATCCCATAATAGTGTAGTGTCAAAA 59.227 37.037 0.00 0.00 0.00 2.44
1875 3531 7.126573 TCCATCCCATAATAGTGTAGTGTCAAA 59.873 37.037 0.00 0.00 0.00 2.69
1876 3532 6.613679 TCCATCCCATAATAGTGTAGTGTCAA 59.386 38.462 0.00 0.00 0.00 3.18
1877 3533 6.140377 TCCATCCCATAATAGTGTAGTGTCA 58.860 40.000 0.00 0.00 0.00 3.58
1878 3534 6.295349 CCTCCATCCCATAATAGTGTAGTGTC 60.295 46.154 0.00 0.00 0.00 3.67
1879 3535 5.544176 CCTCCATCCCATAATAGTGTAGTGT 59.456 44.000 0.00 0.00 0.00 3.55
1880 3536 5.046304 CCCTCCATCCCATAATAGTGTAGTG 60.046 48.000 0.00 0.00 0.00 2.74
1881 3537 5.094387 CCCTCCATCCCATAATAGTGTAGT 58.906 45.833 0.00 0.00 0.00 2.73
1882 3538 5.342017 TCCCTCCATCCCATAATAGTGTAG 58.658 45.833 0.00 0.00 0.00 2.74
1883 3539 5.162760 ACTCCCTCCATCCCATAATAGTGTA 60.163 44.000 0.00 0.00 0.00 2.90
1884 3540 4.171234 CTCCCTCCATCCCATAATAGTGT 58.829 47.826 0.00 0.00 0.00 3.55
1885 3541 4.171234 ACTCCCTCCATCCCATAATAGTG 58.829 47.826 0.00 0.00 0.00 2.74
1886 3542 4.510303 ACTCCCTCCATCCCATAATAGT 57.490 45.455 0.00 0.00 0.00 2.12
1887 3543 5.594777 ACTACTCCCTCCATCCCATAATAG 58.405 45.833 0.00 0.00 0.00 1.73
1888 3544 5.633473 ACTACTCCCTCCATCCCATAATA 57.367 43.478 0.00 0.00 0.00 0.98
1889 3545 4.510303 ACTACTCCCTCCATCCCATAAT 57.490 45.455 0.00 0.00 0.00 1.28
1890 3546 4.295905 AACTACTCCCTCCATCCCATAA 57.704 45.455 0.00 0.00 0.00 1.90
1891 3547 4.295905 AAACTACTCCCTCCATCCCATA 57.704 45.455 0.00 0.00 0.00 2.74
1892 3548 2.897823 AACTACTCCCTCCATCCCAT 57.102 50.000 0.00 0.00 0.00 4.00
1893 3549 2.661176 AAACTACTCCCTCCATCCCA 57.339 50.000 0.00 0.00 0.00 4.37
1894 3550 5.456330 GGATAAAAACTACTCCCTCCATCCC 60.456 48.000 0.00 0.00 0.00 3.85
1895 3551 5.456330 GGGATAAAAACTACTCCCTCCATCC 60.456 48.000 0.00 0.00 43.45 3.51
1896 3552 5.132144 TGGGATAAAAACTACTCCCTCCATC 59.868 44.000 7.90 0.00 46.37 3.51
1897 3553 5.043762 TGGGATAAAAACTACTCCCTCCAT 58.956 41.667 7.90 0.00 46.37 3.41
1898 3554 4.440808 TGGGATAAAAACTACTCCCTCCA 58.559 43.478 7.90 0.00 46.37 3.86
1899 3555 5.446260 TTGGGATAAAAACTACTCCCTCC 57.554 43.478 7.90 0.00 46.37 4.30
1900 3556 7.173032 TCTTTTGGGATAAAAACTACTCCCTC 58.827 38.462 7.90 0.00 46.37 4.30
1901 3557 7.098845 TCTTTTGGGATAAAAACTACTCCCT 57.901 36.000 7.90 0.00 46.37 4.20
1902 3558 7.956328 ATCTTTTGGGATAAAAACTACTCCC 57.044 36.000 0.00 0.00 46.41 4.30
1928 3584 9.740710 AACCTTGACTGTAAGAGCTAAAATTAT 57.259 29.630 0.00 0.00 37.43 1.28
1935 3591 4.833380 AGTGAACCTTGACTGTAAGAGCTA 59.167 41.667 0.00 0.00 37.43 3.32
1937 3593 3.996480 AGTGAACCTTGACTGTAAGAGC 58.004 45.455 0.00 0.00 37.43 4.09
2077 5307 9.468532 TTCACTCTCTATCAATGAAATGATACG 57.531 33.333 0.00 0.00 40.44 3.06
2091 5321 7.262048 CCCTTGTACTCTTTTCACTCTCTATC 58.738 42.308 0.00 0.00 0.00 2.08
2235 5465 4.912395 AAAGGCAGGCACCCGCAA 62.912 61.111 0.00 0.00 41.24 4.85
2333 5563 3.760151 CCTGAACCATCTGAAAGCATCAA 59.240 43.478 0.00 0.00 37.67 2.57
2377 5607 2.124736 GCATGCGTAAGGGCCTGA 60.125 61.111 6.92 0.00 31.19 3.86
2419 5649 0.313043 TTCTTCGAGTGGTGGTCGTC 59.687 55.000 0.00 0.00 38.60 4.20
2430 5660 1.272781 GCACGATCACCTTCTTCGAG 58.727 55.000 0.00 0.00 36.73 4.04
2476 5706 8.431910 AAGTAGTTTAGGTCCTCTTCACATAA 57.568 34.615 0.00 0.00 0.00 1.90
2484 5714 5.404395 AGGTCAAAGTAGTTTAGGTCCTCT 58.596 41.667 0.00 0.00 0.00 3.69
2495 5725 7.057894 TGTTCCACAAATAAGGTCAAAGTAGT 58.942 34.615 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.