>input_sequence_77410
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-------------------------------------------------------------ATGGCGCCCCCACCGCTCC
ACCTCCCGCCCTACTTAGCCCCCACCTGGCCCTCCGGGCGCCCCCGTCCCGCGCCATCATTGAGACCACCGTCACCGCTC
CACCCCTTCTCCGACCTCCTCACCGAGGCGCTCGGGGCCGAGAGCTTAGACCCCGACGAAGTCGCCATGGACGGCGTCCC
CGCGGTCGAAGGCCGGACCCAGCCTTGCAAGAGGCAGTCGCACCACCTCGACGGCGCCGACGACGAAGCCGACCAAGGGT
TCGTGATGCCGAGGCGGACGAGGAGCGGGAGGGCGTTCCCGCCGCCGATATCGGTGATCGGCAAGGGCGGGCGGCCGTGG
CTGATCCTCCGGGCGCACCGAGAGGACGGCCGGCTCGTGCTGCGGGAGATGCGGCTGCCGTCGCAGGAGCTGCTCCAGCC
ATGCAAGGAGGACGGGAGGTTCAAGCTGTTCATGCACCCTGAGACCGGTGGCCGATGCGTCGCCGG---CGTGGGATCAC
GCGCCGCAACGGCCGTGGCGCAGGACTAG---------------------------------------------------
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>chr2B_1_TraesCS2B01G311800
CAGGATCCTTTATAGGAGTAATAGTGGGACAAAACACTGAACAGAACTTTACACACATACGATCGTAGGAAAAACATAAC
ACTATTTGCAAAAAAAAAACATAACACTTTTACCCACTTACATAAATGAAAACACTAAAAATCTAAGGGCATGGTAATTT
ATATTGACACGATGATGTCAAATTTAGTGTGCAAACATGACAATTTTCTGACAATAAATGAAGGACCCTAATAAGTGTCA
CACATGTGGTACAAACACAGTACAACTCCGATTTTTTTTTATGGCAAGTTTAGTACCGCGAGGATGGCAATTTATTTTCG
GAGATGGTAAGTTTCAATTTTTTGGGGGTTTACTTTTTTTATGACAACTTTAGTTGTAAAAAACTTCAGGGCCGGAGTGG
TTCGTACCAAACGTGTGACATTTATCATTTGGGAAAATAAACTGAGGCGAATTTGCCACACTCGTCAACTTAACTTGCCA
TTCTCTAACAATATAATTTGCCATGAAAAATGTTTGATTTGCTACGGTACAAAATCTCACGTCACATTTATAGTGGAGAC
CCCGGCCTTGCAGCACAAACGTCAAAGGAAGCTGGAGTGCTGGACATCTCCTCAAACGAAAAAAAGGAAGCTGGAC----
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--------------ACTACTAGTCCGGATCAGATTTATTATCCAACATTCAACAAACGACTGTTTCTGCGGATAACGAGA
GCCGAGAGAGGCCAGGTGTCTGAAGTGGGCCCTACCGTTGGCGTTTGATCCGTGCCATATCGCCATGCATGCGCCCGCTC
GAGCGCAAAAGCCGAGGCCGCGCACCACCAGCCCCCACGGAGACCCGCTCTCTCGATCAGCTCCATCGGCGCCATTATCT
TAACTGCCATCACGCGATTACGGATATATAGCCGGCGGCCGGCCACCGCTGCCGCACGTACGTACGTCGCGTACACTGCC
ATCCAC---CACCACTGTGCTTCCCCTTGCGCGCGACGACCGTTCGTCCGTCCGCTCGGCCATGGCGCCCCCACCGCTCC
ACCTCCCGCCCTACTTAGCCCCCACCTGGCCCTCCGGGCGCCCCCGTCCCGCGCCATCATTGAGACCACCGTCACCGCTC
CACCCCTTCTCCGACCTCCTCACCGAGGCGCTCGGGGCCGAGAGCTTAGACCCCGACGAAGTCGCCATGGACGGCGTCCC
CGCGGTCGAAGGCCGGACCCAGCCTTGCAAGAGGCAGTCGCACCACCTCGACGGCGCCGACGACGAAGCCGACCAAGGGT
TCGTGATGCCGAGGCGGACGAGGAGCGGGAGGGCGTTCCCGCCGCCGATATCGGTGATCGGCAAGGGCGGGCGGCCGTGG
CTGATCCTCCGGGCGCACCGAGAGGACGGCCGGCTCGTGCTGCGGGAGATGCGGCTGCCGTCGCAGGAGCTGCTCCAGCC
ATGCAAGGAGGACGGGAGGTTCAAGCTGTTCATGCACCCTGAGACCGGTGGCCGATGCGTCGCCGG---CGTGGGATCAC
GCGCCGCAACGGCCGTGGCGCAGGACTAGGAAAGCAAGCGCACTTTGAGGAGCCGATCGACCAGATTGATCTGTACATTA
GTGCCTCGGTGACATCATTCGAGTTCTTCCTCTCCTTCCGTTAACGTTGGTCGTCATAAATCTTGCCTTTCCCGTA----
-------------CTGGAACAATCGCAGCAAATCATCATCTCTCACGCGTTCAA-----------TCTGATCTGTTTCGT
TCCATGAGAAGTTGAG-AACTGAGATACTGCATAGAGACAGTTCAATAACTGAAACACAACAAACACCAATCACATAAAC
AAACCATACAAAAGT--ACCATTTTCAGTATTACACTCAAGATCATAATGTAACTCAACTACTCCCTCCGTCCCATAATA
TAAGAGTGTTTTTGACACTACACTATTATGGGATGGAGGGAGTAGTTTTTATCCCAAAAGATTATAATTTTAGCTCTTAC
AG------------------------------------------------------------------------------
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--------------------------------------------------------TCAAGGTTCACTTGTAAATGGAAG
CTACTCCCATACACCTTAAATATTTACTCAAGGTCAACTCAACAAAAAAATACTCAAGGTAGAAAAACATAATTGATGGG
CATTTTTTTCGCAAATACACATATAGCGTATCATTTCATTGATAGAGAGTGAAAAGAGTACAAGGGGTGGATATCCATAC
TACGTGCGCACTAGAGCGTAGTAGCAGATACCCTAGAGTAGGAGGGAAGGGTTGCTCAGCCCAAAGGATTTAGTCACTAA
GTTACAGGGATGATGCAATCGATGTTGCGGGTGCCTGCCTTTCCCCAACGCTATGCCTCCTCCTCGATTGAGTTGATCAT
GGCCATGACAGATGGTTGAGCGTTGTCGAAGATGCATGCATTTTGATGCTTTCAGATGGTTCAGGCGGTGAGGATGACAA
TCGAGTTCAGGCCCTTACGCATGCAAGATGGGGGTAGCTTCCATGCCAGACGACCACCACTCGAAGAAGGTGATCGTGCC
AACGGGCATAACTGATGGGCATTATTTATGTGAAGAGGACCTAAACTACTTTGACCTTATTTGTGGAACAAGTC
>chr2D_563
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--CGGCCTTGCAGCACAAACGTCAAAGGAAGATGGACATCTCCTT--------------AAAAAAGAAAGCTGGACATGA
CAAGGTATACACATATTGGTAGAATGGTACTCCCACTGTCTCATAATCTAAAATTATTTTTTGACACTATTGGGGCATCT
CCAATGGCGACACGCAAAGTTCCTCCCGCATCCGTCCGCAGACAGGGGGGACCAATCCGTGAACACGGATGCGGAAGGCA
GCCATCCAACCGTAGTTGCATACATTTCAAACTCTTTTTCAACAAACCGGATGAAATTCTTGCAAACACGGCCGAATTTT
ATATAAACATAACGGATTTCATATAAATCGGCCGAAAACGTTTACATTTTGGACTATTTTAACTAAAAATGGCAAAACTA
TATGCACATACGGTCGCGCGGAGCTCCACTCCTACGACACGGATACACTTCACTAATCTACTGTCGGCCGCGGCGGATCG
CTTTGTCTTCCCCATGTCGGGTAGCCTGCACTAAAATGCCGGGAGGTATATACTTCAGCGCAAAGGGTAGCTCGTTTCCC
TGCCAGCTGATGCTTCGGCGGAGGGGAAGGGGCGCCTCCGCTTTCGTGAAGCCTAGACGGGGGCCGACGATGGTCTGCAC
TGAAGAAGAACCGGGCAAGACACCGGCTGTGTACATCGGCATCGCCTCGGCGGTGGTCTTCCTGGGACCCAAGCGGCGTC
GGCCTCCCGTGTTCTACTTTCCCTCGATGTTGGCGGCGGACGCGGACGCGCTGGCCACCGACTCGTTGATCTCCGCACAG
CCGGCTTCTTTCTCTATCGGGAGGACACGTTTACACACGCGTTGACGACAGATGGTGCAGTCGCAGGCACAGGAGGGGCG
GTACGACGTGGCATCGGCCACGACAACGATGATGCCTGTGCCGCCGTGCTCCCCGCCGTGCTGGCCTGGAGCAACTCGCC
ACTCCGCCGCGAGCTGGCTTGGAGTGGCGAGTTGTTGAACCACGCGCCGGCATGGGGCGGCAACTTGCTCTGTCGGCCAG
GCGAGGGAGGTGGAGCAACGAATTGCCTCGCTCATATCCGGCGGGCTCGGCGGGCCTGCACCCAGCCGGCTTTTATGCAG
GAGAACTGCTTCTCCTACTCGTCGGATGCCATCGAAAGGGCAGAGAAAATGGTGAAAGAAGGAGATGGGGAGCGGCAAAG
TGGTGCGAGTCTTGCCCAGCGTCTGGCCTCGTTTAAATAGAGTGCGGATGGGGAAGCTTGCCTGGCGTTGCGTTTAATGC
CAGCCCGGTCGTGAACGAACGTGTGGCTGGAGTAGGTTTCTCGGCTTCCACGCGGGTTTATTGGAGGCGTTTCAATGCGG
TGAGGAGGCGTGTTCAGTCGGACGTGCAGCGGGTGGCGCCCTCAGTCGGCGCGCCGCTTCAATGGCGGAGGCAGTGAGAG
GTCGCGTCCGTTCTGAGCCGTCTGCAATGTGGAGTGGCACGCCCTACAGCGACATGAATGTGGGCAGCTGGCACCGGGCG
AGAACACTCGGGCGAGGAAGAAGGGGTTTGGGTGGGTTTGGACGGTCAGAAGAGGGCTTGGAAATGGTCTGGACTCTGCG
CGGATTGATACATAACCGTGTTTGATGACTTTTATGATCCGAACTAATGCGGGAGGTTTGAAGGTCCGTGTTGGTGATGA
TCGTTTAGTTCCGAACTACTAGTTCGGATCAC----ATTATCCAACTTTCAACAAACGACTGTTTCTGCGGATAGCGAGA
GCCGAGAGAGGCCAGGTATCTCAAGTGGCCCCTACCGTTGGCGCTTGATCCGTGCCATATCGCCATGCATGCGCCCGCTC
GAGCGCAAAAGCCGAGGCTGCGCACCACCGGCCCCCACGGAGACCCG--CTCTCGATCAGCTCGATCGGCGCCATTATCT
TAACTGCCATCACGCGATTACGGATATATAGCCGGCGGCCGGCCACCTCTGCCGCACGTACGTACGTCGCGTACACTGCC
ATCCAC---CACCACTGTGCTTCCCCTTGCGCGCGACGACCGTTCGTCCGTCCACTCGGCCATGGCGCCCCCACCGCTCC
ACCTCCCGCCCTACTTAGCCCCAACCTGGCCCTCCGGGCGCCCCCGTCCGGCGCCATCATTGAGATCACCGTCACCGCTC
CACCCCTTCTCCGACCTCCTCACCGAGGCGCTCGGGGCCGAGAGCTTAGACCCCGACGACGTCGCCATGGACGGCGTCCC
CGCGGTCGAAGGCTGGGCCCAGTCTTGCAAGAGGCAGCAACACCACCTCCAGGAAGTCGACGACGAAGCCGACCAAGGGT
TCGTGATGCCGAGGCGGACGAGGAGCGGGAGGGCGTTCCCGCCGCCGATATCGGTCATCGGCAAGGGCGGGCGGCCGTGG
CTGACCCTCCGGGCGCACCGGGAGGACGGCCGGCTCGTGCTGCGGCAGATGCGGCTGCCGTCGCAGGAGCTGCTCCAGTC
ATGCAAGGAGGACGGGAGGTTCAAGCTGTTTATGCACCCTGAGACCGGTGGCCGATGCGTCGCCGG---CGCGGGATCAC
GCGCCACAACGGCCGTGGCGCAAGACTAGGAAAGCAAGCGCACTTTGAGGCGCCGATCCACCAGATTGATCTGTAAATTA
GTGCGTCGGTGACATCACTCGAGTTATTCCTCTCCTTCCGTTAACGTTGGTCGTGATC-ATCTTGCCTTCCCGTATAATC
CATCCACGCATGGCTGGAACAATCGCGGCAAATCAT---CGCTCACGCGGTCAAGTGTCGCTTGATCTAATCTGTTTCAT
TGCATGAGAAGTTCAATAACTGAGATACTGCATAGAGACAGTTCAATCACTCAAACACAACAAACACCAATCGCATAAAC
AAACCATACAAAAAAAAACCATTTTCAGTATTACACTCAAAATCATAATGTAACTCAAC---------------------
------------------------------------------TAGTTTTTATCCCAAAAGATTCTAATTTCAACTCTTAC
AG------------------------------------------------------------------------------
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--------------------------------------------------------TCAAGGTGCACTTGTAAATGGAAG
CTACTCCCATACACCTTAAATATTTACTCAAGGTCAACTCAACAAAAAATTACTCAAGGTAAAAAAACATAATTGATGGG
CATATTTTTCGCAAATACAGATATAGTGTATCATTTTATTTATAGAGAGTGAAAAGAATACAAGGGGTGGATATCCATAC
TACGTGCGCACTAGAGCGTAGTAGCAGATACCCTAGAGTAGGAGGGAA-GGTTGCTCAGCCCAAAGGATTTAGTCACCAA
GTTACACGGATGATGCAATCGATGCTGCGGGTGTCTGCCTTTCTCCAACGCTATGCCTCCTCCTCGATTGAGCTGATCAT
GGCCATGACAGATGGTTGAGCGTTCTCGAAGATGCATGCATTATGATGCTTTCAGATGGTTCAGGCGGTGAGGATGACAA
TCGAGTCCATGCCCTTACGCATGCAAGATGGGGGTAGCTTCCATGCCATACGACCACCATTCGAAGAAGGCGATTGTGCC
AACGGGCATAACTGATGGGCATTATCTATGTGAGGAGGACCTAAGCTACTTTGAGCTTATTTGTGGAACAAG--
>chr2A_637
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--------------ACTATTAGTTCGGATCAG----ATTATCCAACATTCAACAAACGACTGTTTCTGCGGATAG--AGA
GCCGAGAGAGGCCAGGTGTCTCAAGTGGCCCCTACCGTTCGCGTTTGATCCGTGCCATATCGCCATGCATGCGCCCGCTC
GAGCGCAAAAGCCGAGGCCGCGCACCACCGACCCCCACGGAGACCCG--CTCTCGATCAGCTCGATCGGCGCCATTATCT
TAACTGCCATCTCGCGATTACGGATATATAGCCGGCGGCCGGCCACCGCTGCCGCACGTACGTACGTCGCGTACGCTGCC
GTCCACCACCACCACTGTACTTCCCCTTGCGCGCGACGACCGTTCGTCCGTCCACTCGGCCATGGCGCCCCCACCGCTCC
ACCTCCCGCCCTACTTAGCCCCCACCTGGCCCTCCGGGCGCCCCCGTCCCGCGCCATCATTGAGATCACCGTCCTCGCTC
CACCCCTTCTCCGACCTCCTCACCGAGGCGCTCGGGGCCGAGAGCTTAGACCCCGACGACGTCGCCATGGACGACGACGC
CGCGGTCGAAGGCTGGGCCCAGTCTTGCAAGAGGCAGCAACACCACCTCCAGGAAGTCGACGACGAAGCCGACCAAGGGT
TCGTGATGCCGAGGCGGACGAGGAGCGGGAGGGCGTTCCCGCCGCCGATATCGGTGATCGGCAAGGGCGGGCGGCCGTGG
CTGACCCTCCGGGCGCACCGGGAGGACGGCCGGCTCGTGCTGCGGGAGATGCGGCTGCCATCGCAGGAGCTGCTCCAGTC
ATGCAAGGAGGACGGGAGGTTCAAGCTGTTCATGCACCCGGAGGCCGGTGGCCGATGCGTCGCCGGCGCCGCGGGATCAC
GCGCCACGACGGCCGTGGCGCAGGACTAGGAAATCAAGCGCACTTTGAGGAGCCGATCGACCAGATTGATCTGTAAATTA
GTGCCTCTGTGACATCATTCGAGTTCTTCCTCTCCTTCCGTTAACGTTGGTCGTGATAAATCTTGCCTTTCCCGTA----
-------------CTGGAACAATCGCAGCAAATCAT---CTCTCACGCGTTCAA-----------TCTGATCTGTTTCGT
TCCATGAGAAATTGAG-AACTGAGATACTGCATAGAGACAGTTCAATAACTGAAACACAACAAACACCAATCACATAAAC
AAACCATACAAAAAT--ACCATTTTCAGTATTACACTCAAAATCATAACGTAACTCAACT--------------------
----------------------------------------AGTAGTTTTTATCCCAAAAGATTCTAATTTCAACTCTTAC
AGTCAATGGGTCCACTCTTGCTATCACAGTGGCTACCCCCACGTCGCCCTCCCGCTAGGGCGGCTCGGGTGGAAACCCTA
GCCCCCGCCGCCGGGCACGTCCATCCTCCCCCTCCCCTTCGCCGCTGCTAGAGGAGGTCGTCGGGCGTAGCCCCAGGCGG
CTGATGGCGGCGGCGGAGGCTCTCTTCTCTTCCTTCCCGCGCCAGATCGGTGAGGCGGGTCACCCATGGCGTCGGGACGC
TTTCCCCCGATCTGTGTCGCGGCGGCGCGGCGGCTTAGGCGACGGCGCAAGGCGGCGGCGTGGTGCTAGGCGGGGGCGGC
GCAGCTACTAGGCTCCAAGGAAGATCTGGTGGCGCCGGCTGTTCCATGGGCTCGCGGGGTCATGGCGGCCTTGGTCGCGG
TGGCCGGCGGCTCGGCCTGTCGGCGGCGGCTGGATCCCGGGGCGGCGGCCCTGGAAGGTGGCGGCGGGTGAAGCTCGGGC
TTCCCGCGGCGGCATGGCGTGGCATTGCCCCTATCCAAGGCGAATCTGCATCGCCGATCTCGTGGTTTTGCTGCGAATTG
ATTCAGATCAGAGACGGTGATGAGTGTGCGGGATCCATCTCGGCGGCTCTCGCGGTTTGGCGAGGTGGGATGGGGGCCCT
CCTCCCAGGCTCCAGTGGTGGCGCATTCAGGCAGTGACCGGTGTGTCAGGGCTCCTACGGTGACACTGCCGTTGCGGTTG
GTCGCCGGATCTAGGCAGCTAGATCTGGGGCTTTGAAGGCGGTCGAGACAATGCACAGGTTGTCGGGTAGATTTCTTGGG
ACGGATCCAGGTGAAAACTTGGTCTTCGGTCGTTGGTCGGAGCCAGTGATGACGATGCCTTTATCATCGTTTCCTTCATG
AAGGCATCATCGAGGTGAAGCTCCCAACCCCACCCAATACCTCTGGGGGAAACCCTAGATCAGCTGATCGGATGACGACG
ACATTCATGTGTCATTACCCCCTTGGGGGCGGCATTCTTGGAGTTGCATTCGGGCTCGAGGGACCAGCGGATGGCTTCTT
CGGTGGAGCGGTGTTTATTTCTACATATTCATGGTGGCGATTCTCAGTGGCATAGAGCGGTGAAGGCTTGGCGTCAGATG
TGTGGCGATGGATACGCGCAGGAGGTCGACATTGTCTGGCGTCGTGGTGGCGTCGATGGCAGACATGCCTGACAATGTCG
ATACGTCAGTACATGCTTTGAGGATGGATCGAGGGAAGACGAAGGTGACGGTCCTTTGCAGCGTGTGCGTGTGGTACTTA
CTGAGAGTGCGCCGGACTGGAGTGTTACCCAGTCCCGCCTATGTGGCTTTGCATGGGGCATCCGGCGTTAGATGTTAGGA
TTTTGTGCGATGTCTGTTTGGTATTTGGCTCGGACATTCGGCACACCTTCATCAAGAGGATAGGAGTAACAATAGGTGTC
ATCTAGATGGTGGCCTCGGGCTTACTGTTCAATTTCTTTGTAAAGTCTTTGTGAATAATAAATAATATGGCCGCATGCAT
CTTCCAGATGCAGAGGCCGGGTGTGATTCCTTCTTTTCTAAAAAAAACTCTTACAGTCAAGGTTCACCTGTAAATGAAAG
CTACTCTCATACACCTTAAATATTTACTCAAGGTCAACTCAACAAAAAAGTACTCAAGGTAAAAAAACATAATTGATGGG
CATTTTTAAAAAAAATACACATATAGTGTATCATTTCATTTATAGAGAGTGAAAAGAGTACAAGGGGTGGATATCCATAC
TACGTGCGCACTAAAGCATAGTAGCAGATGCCCTAGAGTAGGAGGAAAGGGTTGCTCAGCCCAAAGGATTTAGTCACTAA
GTTACAGGGATGATGCAATCGATGCTGCGGGTGCCTTCCTTTCCCCAACGCTATGCCTCCTCCTTGATTGAGCTGATCAT
GGC-ATGACAGATGGTTGAGCGTTGTCGAAGATGCATGCATTATGATGCTTTTAGATGGTTCAGCCGGTGAGCATGACAA
TCGAGTCCAGGCCCTTACGCATGCAAGATGGGGGTAGCT-----------------------------------------
--------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS-----------------------------S----SSS--SSSSSSSSSSSSSSSSSS-------S-------------
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-----------------------S--------SSSS--------------------------------------S-----
---------------------S------S---------------------------------------------------
-----------------------------S-----------------SS--------------S----------------
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-----------------------------------------------------S--------------------------
-----------------------------------------------------------------S--------------
-----------------------------------------------------------S--------------------
-------------S--S-----S--------------SSS---------S-S-SS-S-----------------------
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----S---------------S---------------------------------------------------------S-
-----------------------------------------------------------------------S--------
-----S---------------------------------------------------------------------S----
------------------------------------------------------S-------------------------
------------------------------------SSS-----------------------------------------
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-------------S--------------------------S-------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------S------S-S-------
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-------------------------------------------------S-----------S------------------
--------------------------S-------------S---------------------------------------
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------------------------S-----------------------------------------------S-------
------------------------------------------S-------------------------------------
------S-----------------------------------------S----------S----------S---S-----
-------------------------S-------S----------S---------S-----------------SS
>forward_607
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---------------------------GAAGCTGGAGTGCTGGACAT---------------------------------
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>reverse_5649
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------------------------------------------------GACGACCACCACTCGAAGAA------------
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