Multiple sequence alignment - TraesCS2B01G293600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G293600 chr2B 100.000 2435 0 0 1 2435 409399505 409401939 0.000000e+00 4497.0
1 TraesCS2B01G293600 chr2B 92.926 311 21 1 2126 2435 186948848 186948538 3.690000e-123 451.0
2 TraesCS2B01G293600 chr2B 92.581 310 23 0 2126 2435 207477730 207478039 1.720000e-121 446.0
3 TraesCS2B01G293600 chr2A 91.607 977 35 11 829 1797 455480942 455481879 0.000000e+00 1306.0
4 TraesCS2B01G293600 chr2A 83.586 396 57 3 175 562 455479991 455480386 4.950000e-97 364.0
5 TraesCS2B01G293600 chr2A 90.756 119 11 0 1796 1914 455481983 455482101 2.510000e-35 159.0
6 TraesCS2B01G293600 chr2A 89.394 66 7 0 732 797 61961859 61961794 1.550000e-12 84.2
7 TraesCS2B01G293600 chr2D 93.457 703 28 7 862 1561 344302943 344303630 0.000000e+00 1027.0
8 TraesCS2B01G293600 chr2D 81.908 912 97 27 1 868 344302019 344302906 0.000000e+00 708.0
9 TraesCS2B01G293600 chr2D 91.952 497 29 6 1559 2052 344309935 344310423 0.000000e+00 686.0
10 TraesCS2B01G293600 chr2D 91.147 497 35 4 1559 2052 344310780 344311270 0.000000e+00 665.0
11 TraesCS2B01G293600 chr2D 94.194 310 18 0 2126 2435 1626170 1625861 7.880000e-130 473.0
12 TraesCS2B01G293600 chr1D 94.516 310 17 0 2126 2435 331564236 331563927 1.690000e-131 479.0
13 TraesCS2B01G293600 chr5D 93.891 311 18 1 2126 2435 213480222 213479912 3.670000e-128 468.0
14 TraesCS2B01G293600 chr5D 93.204 309 20 1 2127 2435 417729346 417729653 1.030000e-123 453.0
15 TraesCS2B01G293600 chr7B 93.548 310 20 0 2126 2435 542900839 542900530 1.710000e-126 462.0
16 TraesCS2B01G293600 chr7B 92.258 310 21 1 2126 2435 586091476 586091170 1.030000e-118 436.0
17 TraesCS2B01G293600 chr5B 93.226 310 21 0 2126 2435 293655879 293655570 7.940000e-125 457.0
18 TraesCS2B01G293600 chr5A 82.902 193 32 1 1761 1953 119438238 119438047 3.220000e-39 172.0
19 TraesCS2B01G293600 chr5A 91.525 59 5 0 740 798 592521382 592521440 5.580000e-12 82.4
20 TraesCS2B01G293600 chr3D 79.762 168 23 4 652 808 319839548 319839381 7.120000e-21 111.0
21 TraesCS2B01G293600 chr3D 79.245 159 22 6 650 798 67054892 67055049 1.540000e-17 100.0
22 TraesCS2B01G293600 chr6D 89.474 76 8 0 733 808 338515257 338515182 1.990000e-16 97.1
23 TraesCS2B01G293600 chr4B 79.592 147 18 6 651 797 398567091 398566957 7.170000e-16 95.3
24 TraesCS2B01G293600 chr4A 78.912 147 21 4 651 787 595044919 595044773 9.270000e-15 91.6
25 TraesCS2B01G293600 chr6A 86.420 81 7 3 735 815 115348671 115348595 4.310000e-13 86.1
26 TraesCS2B01G293600 chr1B 86.842 76 10 0 733 808 96462996 96463071 4.310000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G293600 chr2B 409399505 409401939 2434 False 4497.000000 4497 100.000000 1 2435 1 chr2B.!!$F2 2434
1 TraesCS2B01G293600 chr2A 455479991 455482101 2110 False 609.666667 1306 88.649667 175 1914 3 chr2A.!!$F1 1739
2 TraesCS2B01G293600 chr2D 344302019 344303630 1611 False 867.500000 1027 87.682500 1 1561 2 chr2D.!!$F1 1560
3 TraesCS2B01G293600 chr2D 344309935 344311270 1335 False 675.500000 686 91.549500 1559 2052 2 chr2D.!!$F2 493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 510 0.31716 ATGAACACAAGCGTCTCCGA 59.683 50.0 0.0 0.0 35.63 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2399 3745 0.108041 TAATTCCGACGGCCTGGAAC 60.108 55.0 19.51 0.0 46.41 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.208463 GCTATATATGCTCTTAGCCCCTC 57.792 47.826 0.00 0.00 41.51 4.30
33 34 1.298953 ATGCTCTTAGCCCCTCCAAA 58.701 50.000 0.00 0.00 41.51 3.28
42 43 1.291939 AGCCCCTCCAAATAAAGCCAT 59.708 47.619 0.00 0.00 0.00 4.40
59 60 0.677731 CATGTCGCCCCACTCAACAT 60.678 55.000 0.00 0.00 0.00 2.71
85 87 4.603989 TTTTGCTGCATGAAGAAATGGA 57.396 36.364 4.31 0.00 0.00 3.41
86 88 3.581024 TTGCTGCATGAAGAAATGGAC 57.419 42.857 4.31 0.00 0.00 4.02
87 89 1.469703 TGCTGCATGAAGAAATGGACG 59.530 47.619 4.31 0.00 0.00 4.79
88 90 1.470098 GCTGCATGAAGAAATGGACGT 59.530 47.619 4.31 0.00 0.00 4.34
120 122 2.002586 CGGCCGGATGATGATATGAAC 58.997 52.381 20.10 0.00 0.00 3.18
130 136 4.936891 TGATGATATGAACTGACCGTCTG 58.063 43.478 4.00 4.00 0.00 3.51
133 139 0.535335 TATGAACTGACCGTCTGGCC 59.465 55.000 9.89 0.00 39.70 5.36
136 142 3.222354 AACTGACCGTCTGGCCGAC 62.222 63.158 15.15 15.15 39.70 4.79
137 143 3.374402 CTGACCGTCTGGCCGACT 61.374 66.667 20.38 7.43 40.59 4.18
177 183 9.754382 AATAATAATCATTCAATCAACTGCCAC 57.246 29.630 0.00 0.00 0.00 5.01
210 216 9.480053 GTCACTTTATGTAACAAGGTTAGTGTA 57.520 33.333 0.00 0.00 33.89 2.90
214 221 4.319139 TGTAACAAGGTTAGTGTACGCA 57.681 40.909 9.48 0.00 0.00 5.24
223 230 4.685447 GTGTACGCACATCCCACA 57.315 55.556 0.39 0.00 44.64 4.17
224 231 3.153024 GTGTACGCACATCCCACAT 57.847 52.632 0.39 0.00 44.64 3.21
225 232 1.006832 GTGTACGCACATCCCACATC 58.993 55.000 0.39 0.00 44.64 3.06
230 237 1.097232 CGCACATCCCACATCAACAT 58.903 50.000 0.00 0.00 0.00 2.71
233 240 2.159338 GCACATCCCACATCAACATGAC 60.159 50.000 0.00 0.00 33.72 3.06
249 256 6.262944 TCAACATGACTCTTGCTACAAAACAT 59.737 34.615 0.00 0.00 0.00 2.71
252 259 4.072131 TGACTCTTGCTACAAAACATCCC 58.928 43.478 0.00 0.00 0.00 3.85
256 263 3.500680 TCTTGCTACAAAACATCCCGAAC 59.499 43.478 0.00 0.00 0.00 3.95
258 265 4.274602 TGCTACAAAACATCCCGAACTA 57.725 40.909 0.00 0.00 0.00 2.24
260 267 5.979993 TGCTACAAAACATCCCGAACTATA 58.020 37.500 0.00 0.00 0.00 1.31
288 299 2.028567 CCCCGTTACAAACCATTGCAAT 60.029 45.455 5.99 5.99 40.34 3.56
290 301 4.420168 CCCGTTACAAACCATTGCAATAG 58.580 43.478 12.53 7.57 40.34 1.73
316 327 6.203338 CACAAATGCTTCCAAAACATAGCTTT 59.797 34.615 0.00 0.00 33.91 3.51
327 338 7.223777 TCCAAAACATAGCTTTAGTTGCAAAAC 59.776 33.333 0.00 0.00 0.00 2.43
381 395 1.338011 CCTCATTTGCGGCCATGTTTT 60.338 47.619 2.24 0.00 0.00 2.43
382 396 1.994779 CTCATTTGCGGCCATGTTTTC 59.005 47.619 2.24 0.00 0.00 2.29
398 412 5.957842 TGTTTTCAAACTAGGCTATGGTG 57.042 39.130 0.00 0.00 39.59 4.17
416 430 4.082523 TAGGCTGCTGTGGGTCGC 62.083 66.667 0.00 0.00 0.00 5.19
440 454 4.621526 GATCAAAGACGATCGTATGCTG 57.378 45.455 22.79 18.30 32.97 4.41
473 487 1.546476 GACACCCACGAAGAGATCAGT 59.454 52.381 0.00 0.00 0.00 3.41
474 488 1.971357 ACACCCACGAAGAGATCAGTT 59.029 47.619 0.00 0.00 0.00 3.16
477 491 3.444034 CACCCACGAAGAGATCAGTTAGA 59.556 47.826 0.00 0.00 0.00 2.10
496 510 0.317160 ATGAACACAAGCGTCTCCGA 59.683 50.000 0.00 0.00 35.63 4.55
501 515 0.721718 CACAAGCGTCTCCGATTTCC 59.278 55.000 0.00 0.00 40.25 3.13
510 524 4.430007 CGTCTCCGATTTCCTTTATCACA 58.570 43.478 0.00 0.00 35.63 3.58
515 529 7.227512 GTCTCCGATTTCCTTTATCACATGAAT 59.772 37.037 0.00 0.00 0.00 2.57
543 557 9.921637 TCTTCCCAATAATTTTACATGAACAAC 57.078 29.630 0.00 0.00 0.00 3.32
544 558 9.927668 CTTCCCAATAATTTTACATGAACAACT 57.072 29.630 0.00 0.00 0.00 3.16
575 589 5.873164 CGCCCTTGTTGTAGAAACTATACTT 59.127 40.000 0.00 0.00 0.00 2.24
588 602 8.718102 AGAAACTATACTTCGCAATAACATGT 57.282 30.769 0.00 0.00 0.00 3.21
594 608 9.638300 CTATACTTCGCAATAACATGTTCTTTC 57.362 33.333 15.85 5.31 0.00 2.62
617 631 8.492673 TTCTTCGAAGAACAATAGCATGTATT 57.507 30.769 31.62 0.00 45.90 1.89
632 646 4.035208 GCATGTATTTGTAAGGACCCGAAG 59.965 45.833 0.00 0.00 0.00 3.79
640 654 1.280457 AAGGACCCGAAGATTCAGCT 58.720 50.000 0.00 0.00 0.00 4.24
642 656 2.467880 AGGACCCGAAGATTCAGCTAA 58.532 47.619 0.00 0.00 0.00 3.09
643 657 3.041946 AGGACCCGAAGATTCAGCTAAT 58.958 45.455 0.00 0.00 0.00 1.73
646 660 3.798202 ACCCGAAGATTCAGCTAATGTC 58.202 45.455 0.00 0.00 0.00 3.06
648 662 4.191544 CCCGAAGATTCAGCTAATGTCAA 58.808 43.478 0.00 0.00 0.00 3.18
680 718 5.991861 TGGTAAATTATGTTAGCCGAGGAA 58.008 37.500 0.00 0.00 31.78 3.36
696 734 4.337274 CCGAGGAAAACAAGTTTAGTTGGT 59.663 41.667 0.00 0.00 31.63 3.67
710 748 3.430042 AGTTGGTGAGCATGACAGATT 57.570 42.857 0.00 0.00 0.00 2.40
720 758 2.602211 GCATGACAGATTCGACTCAGTG 59.398 50.000 5.54 0.00 0.00 3.66
723 761 2.035832 TGACAGATTCGACTCAGTGCAA 59.964 45.455 5.54 0.00 0.00 4.08
752 801 2.241722 CGTGCTCGCCAACTAAATTTG 58.758 47.619 0.00 0.00 0.00 2.32
776 825 6.017192 TGTCATCCTCACGCCAATATAAATTG 60.017 38.462 0.00 0.00 41.90 2.32
788 837 7.125113 GCCAATATAAATTGCCATGAAAAACG 58.875 34.615 0.00 0.00 41.06 3.60
800 849 5.655576 CCATGAAAAACGTTTGATTTGTCG 58.344 37.500 15.46 0.00 0.00 4.35
808 857 5.041951 ACGTTTGATTTGTCGTGCATAAT 57.958 34.783 0.00 0.00 35.24 1.28
809 858 5.457140 ACGTTTGATTTGTCGTGCATAATT 58.543 33.333 0.00 0.00 35.24 1.40
811 860 7.078851 ACGTTTGATTTGTCGTGCATAATTAA 58.921 30.769 0.00 0.00 35.24 1.40
812 861 7.591795 ACGTTTGATTTGTCGTGCATAATTAAA 59.408 29.630 0.00 0.00 35.24 1.52
813 862 8.420945 CGTTTGATTTGTCGTGCATAATTAAAA 58.579 29.630 0.00 0.00 0.00 1.52
929 1323 3.806316 AAAATGTGGACGCGTCTTAAG 57.194 42.857 35.50 0.00 0.00 1.85
1015 1409 1.472480 CAAAAATGGCTACCTCCACCG 59.528 52.381 0.00 0.00 39.25 4.94
1431 1825 2.026822 GTCTCTCATGCCTTCTCCCAAA 60.027 50.000 0.00 0.00 0.00 3.28
1491 1885 1.356624 GTGCTGGTGTTGTGCTGTC 59.643 57.895 0.00 0.00 0.00 3.51
1492 1886 1.823470 TGCTGGTGTTGTGCTGTCC 60.823 57.895 0.00 0.00 0.00 4.02
1514 1909 5.298276 TCCTTGTTACTCGTTGCATTTTTCT 59.702 36.000 0.00 0.00 0.00 2.52
1597 1994 7.986085 AGTATTTGTCATCCATACTTATGCC 57.014 36.000 0.00 0.00 30.93 4.40
1630 2027 0.025001 GCGTACGCATGTGTGATGTC 59.975 55.000 33.90 0.00 41.49 3.06
1708 2105 1.657751 GCCAGGGCGTCTTTTGGATC 61.658 60.000 9.40 0.00 32.34 3.36
1736 2133 0.535335 TAAGGTGGCATCCTCGTGTC 59.465 55.000 8.72 0.00 36.74 3.67
1819 2321 6.667007 AGTATTTTAACCCGTGATTTACCG 57.333 37.500 0.00 0.00 0.00 4.02
1823 2325 0.956902 AACCCGTGATTTACCGGTGC 60.957 55.000 19.93 4.40 39.54 5.01
1934 3278 6.856895 GCTATCTGCTTACCAAAGAAAACAT 58.143 36.000 0.00 0.00 38.95 2.71
1936 3280 8.458843 GCTATCTGCTTACCAAAGAAAACATAA 58.541 33.333 0.00 0.00 38.95 1.90
1968 3314 4.084171 GGTAAGTCGGTGAAACAGTTAAGC 60.084 45.833 0.00 0.00 39.98 3.09
1969 3315 3.470645 AGTCGGTGAAACAGTTAAGCT 57.529 42.857 0.00 0.00 39.98 3.74
1991 3337 6.886459 AGCTGAGTTTTAAGGAATGATGCTTA 59.114 34.615 0.00 0.00 38.31 3.09
2028 3374 0.036732 TAGCCAAAGCACTCCACCTG 59.963 55.000 0.00 0.00 43.56 4.00
2029 3375 1.228245 GCCAAAGCACTCCACCTGA 60.228 57.895 0.00 0.00 39.53 3.86
2039 3385 2.104792 CACTCCACCTGACAGGAAAAGA 59.895 50.000 28.56 15.86 37.67 2.52
2043 3389 3.053991 TCCACCTGACAGGAAAAGAAACA 60.054 43.478 28.56 0.00 37.67 2.83
2085 3431 4.184649 GAGATTCTTCTCCTCTCCCTCT 57.815 50.000 0.00 0.00 42.26 3.69
2086 3432 4.145052 GAGATTCTTCTCCTCTCCCTCTC 58.855 52.174 0.00 0.00 42.26 3.20
2087 3433 3.793827 AGATTCTTCTCCTCTCCCTCTCT 59.206 47.826 0.00 0.00 0.00 3.10
2088 3434 3.662759 TTCTTCTCCTCTCCCTCTCTC 57.337 52.381 0.00 0.00 0.00 3.20
2089 3435 2.858644 TCTTCTCCTCTCCCTCTCTCT 58.141 52.381 0.00 0.00 0.00 3.10
2090 3436 3.197983 TCTTCTCCTCTCCCTCTCTCTT 58.802 50.000 0.00 0.00 0.00 2.85
2091 3437 3.596046 TCTTCTCCTCTCCCTCTCTCTTT 59.404 47.826 0.00 0.00 0.00 2.52
2092 3438 3.662759 TCTCCTCTCCCTCTCTCTTTC 57.337 52.381 0.00 0.00 0.00 2.62
2093 3439 2.243736 TCTCCTCTCCCTCTCTCTTTCC 59.756 54.545 0.00 0.00 0.00 3.13
2094 3440 1.064314 TCCTCTCCCTCTCTCTTTCCG 60.064 57.143 0.00 0.00 0.00 4.30
2095 3441 1.398692 CTCTCCCTCTCTCTTTCCGG 58.601 60.000 0.00 0.00 0.00 5.14
2096 3442 0.705253 TCTCCCTCTCTCTTTCCGGT 59.295 55.000 0.00 0.00 0.00 5.28
2097 3443 1.077334 TCTCCCTCTCTCTTTCCGGTT 59.923 52.381 0.00 0.00 0.00 4.44
2098 3444 1.903183 CTCCCTCTCTCTTTCCGGTTT 59.097 52.381 0.00 0.00 0.00 3.27
2099 3445 1.623811 TCCCTCTCTCTTTCCGGTTTG 59.376 52.381 0.00 0.00 0.00 2.93
2100 3446 1.348036 CCCTCTCTCTTTCCGGTTTGT 59.652 52.381 0.00 0.00 0.00 2.83
2101 3447 2.224548 CCCTCTCTCTTTCCGGTTTGTT 60.225 50.000 0.00 0.00 0.00 2.83
2102 3448 3.007614 CCCTCTCTCTTTCCGGTTTGTTA 59.992 47.826 0.00 0.00 0.00 2.41
2103 3449 4.246458 CCTCTCTCTTTCCGGTTTGTTAG 58.754 47.826 0.00 0.00 0.00 2.34
2104 3450 4.021368 CCTCTCTCTTTCCGGTTTGTTAGA 60.021 45.833 0.00 0.00 0.00 2.10
2105 3451 5.510861 CCTCTCTCTTTCCGGTTTGTTAGAA 60.511 44.000 0.00 0.00 0.00 2.10
2106 3452 5.920903 TCTCTCTTTCCGGTTTGTTAGAAA 58.079 37.500 0.00 0.00 0.00 2.52
2107 3453 6.531021 TCTCTCTTTCCGGTTTGTTAGAAAT 58.469 36.000 0.00 0.00 0.00 2.17
2108 3454 7.673180 TCTCTCTTTCCGGTTTGTTAGAAATA 58.327 34.615 0.00 0.00 0.00 1.40
2109 3455 8.152246 TCTCTCTTTCCGGTTTGTTAGAAATAA 58.848 33.333 0.00 0.00 0.00 1.40
2110 3456 8.319143 TCTCTTTCCGGTTTGTTAGAAATAAG 57.681 34.615 0.00 0.00 0.00 1.73
2111 3457 7.389607 TCTCTTTCCGGTTTGTTAGAAATAAGG 59.610 37.037 0.00 0.00 0.00 2.69
2112 3458 7.225725 TCTTTCCGGTTTGTTAGAAATAAGGA 58.774 34.615 0.00 0.00 0.00 3.36
2113 3459 7.720515 TCTTTCCGGTTTGTTAGAAATAAGGAA 59.279 33.333 0.00 5.20 32.91 3.36
2114 3460 8.411991 TTTCCGGTTTGTTAGAAATAAGGAAT 57.588 30.769 0.00 0.00 34.54 3.01
2115 3461 7.619964 TCCGGTTTGTTAGAAATAAGGAATC 57.380 36.000 0.00 0.00 0.00 2.52
2116 3462 6.600427 TCCGGTTTGTTAGAAATAAGGAATCC 59.400 38.462 0.00 0.00 0.00 3.01
2117 3463 6.376018 CCGGTTTGTTAGAAATAAGGAATCCA 59.624 38.462 0.61 0.00 0.00 3.41
2118 3464 7.068226 CCGGTTTGTTAGAAATAAGGAATCCAT 59.932 37.037 0.61 0.00 0.00 3.41
2119 3465 9.116067 CGGTTTGTTAGAAATAAGGAATCCATA 57.884 33.333 0.61 0.00 0.00 2.74
2151 3497 7.712204 TTTTTGACAACTAAAACTCCCTCTT 57.288 32.000 0.00 0.00 0.00 2.85
2152 3498 7.712204 TTTTGACAACTAAAACTCCCTCTTT 57.288 32.000 0.00 0.00 0.00 2.52
2153 3499 8.810990 TTTTGACAACTAAAACTCCCTCTTTA 57.189 30.769 0.00 0.00 0.00 1.85
2154 3500 8.990163 TTTGACAACTAAAACTCCCTCTTTAT 57.010 30.769 0.00 0.00 0.00 1.40
2155 3501 8.990163 TTGACAACTAAAACTCCCTCTTTATT 57.010 30.769 0.00 0.00 0.00 1.40
2156 3502 8.617290 TGACAACTAAAACTCCCTCTTTATTC 57.383 34.615 0.00 0.00 0.00 1.75
2157 3503 8.215050 TGACAACTAAAACTCCCTCTTTATTCA 58.785 33.333 0.00 0.00 0.00 2.57
2158 3504 9.232473 GACAACTAAAACTCCCTCTTTATTCAT 57.768 33.333 0.00 0.00 0.00 2.57
2159 3505 9.588096 ACAACTAAAACTCCCTCTTTATTCATT 57.412 29.630 0.00 0.00 0.00 2.57
2160 3506 9.846248 CAACTAAAACTCCCTCTTTATTCATTG 57.154 33.333 0.00 0.00 0.00 2.82
2161 3507 8.581253 ACTAAAACTCCCTCTTTATTCATTGG 57.419 34.615 0.00 0.00 0.00 3.16
2162 3508 8.170730 ACTAAAACTCCCTCTTTATTCATTGGT 58.829 33.333 0.00 0.00 0.00 3.67
2163 3509 6.840780 AAACTCCCTCTTTATTCATTGGTG 57.159 37.500 0.00 0.00 0.00 4.17
2164 3510 5.779241 ACTCCCTCTTTATTCATTGGTGA 57.221 39.130 0.00 0.00 0.00 4.02
2165 3511 6.332976 ACTCCCTCTTTATTCATTGGTGAT 57.667 37.500 0.00 0.00 33.56 3.06
2166 3512 7.451731 ACTCCCTCTTTATTCATTGGTGATA 57.548 36.000 0.00 0.00 33.56 2.15
2167 3513 7.872138 ACTCCCTCTTTATTCATTGGTGATAA 58.128 34.615 0.00 0.00 33.56 1.75
2168 3514 7.775561 ACTCCCTCTTTATTCATTGGTGATAAC 59.224 37.037 0.00 0.00 33.56 1.89
2169 3515 7.638444 TCCCTCTTTATTCATTGGTGATAACA 58.362 34.615 0.00 0.00 33.56 2.41
2170 3516 7.556275 TCCCTCTTTATTCATTGGTGATAACAC 59.444 37.037 0.00 0.00 45.27 3.32
2192 3538 7.621796 ACACCTACATCTTTAAGTAAAGGAGG 58.378 38.462 10.21 12.57 42.17 4.30
2193 3539 7.456902 ACACCTACATCTTTAAGTAAAGGAGGA 59.543 37.037 18.55 7.82 42.17 3.71
2194 3540 8.319146 CACCTACATCTTTAAGTAAAGGAGGAA 58.681 37.037 18.55 2.32 42.17 3.36
2195 3541 8.541234 ACCTACATCTTTAAGTAAAGGAGGAAG 58.459 37.037 18.55 11.08 42.17 3.46
2196 3542 8.759782 CCTACATCTTTAAGTAAAGGAGGAAGA 58.240 37.037 10.21 0.00 42.17 2.87
2199 3545 7.608376 ACATCTTTAAGTAAAGGAGGAAGAAGC 59.392 37.037 10.21 0.00 42.17 3.86
2200 3546 7.317722 TCTTTAAGTAAAGGAGGAAGAAGCT 57.682 36.000 10.21 0.00 42.17 3.74
2201 3547 7.387643 TCTTTAAGTAAAGGAGGAAGAAGCTC 58.612 38.462 10.21 0.00 42.17 4.09
2202 3548 6.681729 TTAAGTAAAGGAGGAAGAAGCTCA 57.318 37.500 0.00 0.00 0.00 4.26
2203 3549 5.770685 AAGTAAAGGAGGAAGAAGCTCAT 57.229 39.130 0.00 0.00 0.00 2.90
2204 3550 5.770685 AGTAAAGGAGGAAGAAGCTCATT 57.229 39.130 0.00 0.00 0.00 2.57
2205 3551 6.875972 AGTAAAGGAGGAAGAAGCTCATTA 57.124 37.500 0.00 0.00 0.00 1.90
2206 3552 6.883744 AGTAAAGGAGGAAGAAGCTCATTAG 58.116 40.000 0.00 0.00 0.00 1.73
2207 3553 4.769345 AAGGAGGAAGAAGCTCATTAGG 57.231 45.455 0.00 0.00 0.00 2.69
2208 3554 4.000928 AGGAGGAAGAAGCTCATTAGGA 57.999 45.455 0.00 0.00 0.00 2.94
2209 3555 3.966665 AGGAGGAAGAAGCTCATTAGGAG 59.033 47.826 0.00 0.00 46.93 3.69
2222 3568 6.704289 CTCATTAGGAGCAATTTCAATCCA 57.296 37.500 0.00 0.00 36.69 3.41
2223 3569 6.455360 TCATTAGGAGCAATTTCAATCCAC 57.545 37.500 0.00 0.00 34.08 4.02
2224 3570 6.189859 TCATTAGGAGCAATTTCAATCCACT 58.810 36.000 0.00 0.00 34.08 4.00
2225 3571 6.319658 TCATTAGGAGCAATTTCAATCCACTC 59.680 38.462 0.00 0.00 34.08 3.51
2226 3572 4.038271 AGGAGCAATTTCAATCCACTCA 57.962 40.909 0.00 0.00 34.08 3.41
2227 3573 3.760684 AGGAGCAATTTCAATCCACTCAC 59.239 43.478 0.00 0.00 34.08 3.51
2228 3574 3.760684 GGAGCAATTTCAATCCACTCACT 59.239 43.478 0.00 0.00 0.00 3.41
2229 3575 4.219288 GGAGCAATTTCAATCCACTCACTT 59.781 41.667 0.00 0.00 0.00 3.16
2230 3576 5.382618 AGCAATTTCAATCCACTCACTTC 57.617 39.130 0.00 0.00 0.00 3.01
2231 3577 4.828939 AGCAATTTCAATCCACTCACTTCA 59.171 37.500 0.00 0.00 0.00 3.02
2232 3578 5.048224 AGCAATTTCAATCCACTCACTTCAG 60.048 40.000 0.00 0.00 0.00 3.02
2233 3579 5.048504 GCAATTTCAATCCACTCACTTCAGA 60.049 40.000 0.00 0.00 0.00 3.27
2234 3580 6.515531 GCAATTTCAATCCACTCACTTCAGAA 60.516 38.462 0.00 0.00 0.00 3.02
2235 3581 7.600065 CAATTTCAATCCACTCACTTCAGAAT 58.400 34.615 0.00 0.00 0.00 2.40
2236 3582 7.771927 ATTTCAATCCACTCACTTCAGAATT 57.228 32.000 0.00 0.00 0.00 2.17
2237 3583 7.587037 TTTCAATCCACTCACTTCAGAATTT 57.413 32.000 0.00 0.00 0.00 1.82
2238 3584 8.690203 TTTCAATCCACTCACTTCAGAATTTA 57.310 30.769 0.00 0.00 0.00 1.40
2239 3585 7.912056 TCAATCCACTCACTTCAGAATTTAG 57.088 36.000 0.00 0.00 0.00 1.85
2240 3586 7.679783 TCAATCCACTCACTTCAGAATTTAGA 58.320 34.615 0.00 0.00 0.00 2.10
2241 3587 8.324306 TCAATCCACTCACTTCAGAATTTAGAT 58.676 33.333 0.00 0.00 0.00 1.98
2242 3588 8.610896 CAATCCACTCACTTCAGAATTTAGATC 58.389 37.037 0.00 0.00 0.00 2.75
2243 3589 7.487822 TCCACTCACTTCAGAATTTAGATCT 57.512 36.000 0.00 0.00 0.00 2.75
2244 3590 8.595362 TCCACTCACTTCAGAATTTAGATCTA 57.405 34.615 0.00 0.00 0.00 1.98
2245 3591 8.690884 TCCACTCACTTCAGAATTTAGATCTAG 58.309 37.037 2.02 0.00 0.00 2.43
2246 3592 7.437862 CCACTCACTTCAGAATTTAGATCTAGC 59.562 40.741 2.02 0.00 0.00 3.42
2247 3593 8.196771 CACTCACTTCAGAATTTAGATCTAGCT 58.803 37.037 2.02 0.00 0.00 3.32
2248 3594 9.415008 ACTCACTTCAGAATTTAGATCTAGCTA 57.585 33.333 2.02 0.00 0.00 3.32
2249 3595 9.677567 CTCACTTCAGAATTTAGATCTAGCTAC 57.322 37.037 2.02 0.00 0.00 3.58
2250 3596 9.190317 TCACTTCAGAATTTAGATCTAGCTACA 57.810 33.333 2.02 0.00 0.00 2.74
2251 3597 9.243637 CACTTCAGAATTTAGATCTAGCTACAC 57.756 37.037 2.02 0.00 0.00 2.90
2252 3598 9.196139 ACTTCAGAATTTAGATCTAGCTACACT 57.804 33.333 2.02 0.00 0.00 3.55
2270 3616 7.171447 CTACACTAGCTAATTCATGAGCAAC 57.829 40.000 7.34 0.00 41.36 4.17
2271 3617 5.491070 ACACTAGCTAATTCATGAGCAACA 58.509 37.500 7.34 0.00 41.36 3.33
2272 3618 5.939883 ACACTAGCTAATTCATGAGCAACAA 59.060 36.000 7.34 0.00 41.36 2.83
2273 3619 6.128172 ACACTAGCTAATTCATGAGCAACAAC 60.128 38.462 7.34 0.00 41.36 3.32
2274 3620 4.346734 AGCTAATTCATGAGCAACAACG 57.653 40.909 7.34 0.00 41.36 4.10
2275 3621 3.753272 AGCTAATTCATGAGCAACAACGT 59.247 39.130 7.34 0.00 41.36 3.99
2276 3622 4.216257 AGCTAATTCATGAGCAACAACGTT 59.784 37.500 7.34 0.00 41.36 3.99
2277 3623 4.917415 GCTAATTCATGAGCAACAACGTTT 59.083 37.500 0.00 0.00 38.62 3.60
2278 3624 5.164158 GCTAATTCATGAGCAACAACGTTTG 60.164 40.000 0.00 0.00 38.62 2.93
2288 3634 4.133856 CAACAACGTTTGCTTCTCTAGG 57.866 45.455 0.00 0.00 0.00 3.02
2289 3635 3.746045 ACAACGTTTGCTTCTCTAGGA 57.254 42.857 0.00 0.00 0.00 2.94
2290 3636 3.391049 ACAACGTTTGCTTCTCTAGGAC 58.609 45.455 0.00 0.00 0.00 3.85
2291 3637 3.181469 ACAACGTTTGCTTCTCTAGGACA 60.181 43.478 0.00 0.00 0.00 4.02
2292 3638 3.746045 ACGTTTGCTTCTCTAGGACAA 57.254 42.857 0.00 0.00 0.00 3.18
2293 3639 4.067972 ACGTTTGCTTCTCTAGGACAAA 57.932 40.909 0.00 0.00 0.00 2.83
2294 3640 4.448210 ACGTTTGCTTCTCTAGGACAAAA 58.552 39.130 0.00 0.00 32.51 2.44
2295 3641 5.063880 ACGTTTGCTTCTCTAGGACAAAAT 58.936 37.500 0.00 0.00 32.51 1.82
2296 3642 5.531287 ACGTTTGCTTCTCTAGGACAAAATT 59.469 36.000 0.00 0.00 32.51 1.82
2297 3643 6.080406 CGTTTGCTTCTCTAGGACAAAATTC 58.920 40.000 0.00 0.00 32.51 2.17
2298 3644 6.293407 CGTTTGCTTCTCTAGGACAAAATTCA 60.293 38.462 0.00 0.00 32.51 2.57
2299 3645 7.425606 GTTTGCTTCTCTAGGACAAAATTCAA 58.574 34.615 0.00 0.00 32.51 2.69
2300 3646 7.581213 TTGCTTCTCTAGGACAAAATTCAAA 57.419 32.000 0.00 0.00 0.00 2.69
2301 3647 6.970484 TGCTTCTCTAGGACAAAATTCAAAC 58.030 36.000 0.00 0.00 0.00 2.93
2302 3648 6.016276 TGCTTCTCTAGGACAAAATTCAAACC 60.016 38.462 0.00 0.00 0.00 3.27
2303 3649 6.554334 TTCTCTAGGACAAAATTCAAACCG 57.446 37.500 0.00 0.00 0.00 4.44
2304 3650 5.860611 TCTCTAGGACAAAATTCAAACCGA 58.139 37.500 0.00 0.00 0.00 4.69
2305 3651 6.292923 TCTCTAGGACAAAATTCAAACCGAA 58.707 36.000 0.00 0.00 38.22 4.30
2306 3652 6.940298 TCTCTAGGACAAAATTCAAACCGAAT 59.060 34.615 0.00 0.00 46.70 3.34
2319 3665 6.928979 TCAAACCGAATTGAACTAAACTCA 57.071 33.333 1.04 0.00 36.42 3.41
2320 3666 6.721321 TCAAACCGAATTGAACTAAACTCAC 58.279 36.000 1.04 0.00 36.42 3.51
2321 3667 6.316640 TCAAACCGAATTGAACTAAACTCACA 59.683 34.615 1.04 0.00 36.42 3.58
2322 3668 6.877611 AACCGAATTGAACTAAACTCACAT 57.122 33.333 0.00 0.00 0.00 3.21
2323 3669 6.241207 ACCGAATTGAACTAAACTCACATG 57.759 37.500 0.00 0.00 0.00 3.21
2324 3670 5.088739 CCGAATTGAACTAAACTCACATGC 58.911 41.667 0.00 0.00 0.00 4.06
2325 3671 5.088739 CGAATTGAACTAAACTCACATGCC 58.911 41.667 0.00 0.00 0.00 4.40
2326 3672 5.334802 CGAATTGAACTAAACTCACATGCCA 60.335 40.000 0.00 0.00 0.00 4.92
2327 3673 6.403866 AATTGAACTAAACTCACATGCCAA 57.596 33.333 0.00 0.00 0.00 4.52
2328 3674 5.437289 TTGAACTAAACTCACATGCCAAG 57.563 39.130 0.00 0.00 0.00 3.61
2329 3675 4.460263 TGAACTAAACTCACATGCCAAGT 58.540 39.130 0.00 0.00 0.00 3.16
2330 3676 4.275689 TGAACTAAACTCACATGCCAAGTG 59.724 41.667 0.00 0.00 38.32 3.16
2331 3677 3.149196 ACTAAACTCACATGCCAAGTGG 58.851 45.455 0.00 0.00 37.58 4.00
2332 3678 2.071778 AAACTCACATGCCAAGTGGT 57.928 45.000 0.00 0.00 37.58 4.16
2333 3679 2.949177 AACTCACATGCCAAGTGGTA 57.051 45.000 0.00 0.00 37.58 3.25
2334 3680 2.949177 ACTCACATGCCAAGTGGTAA 57.051 45.000 0.00 0.00 37.58 2.85
2335 3681 2.504367 ACTCACATGCCAAGTGGTAAC 58.496 47.619 0.00 0.00 37.58 2.50
2357 3703 1.007734 CATCAATGATGGCTGCCGC 60.008 57.895 15.09 9.31 36.51 6.53
2358 3704 1.454295 ATCAATGATGGCTGCCGCA 60.454 52.632 14.98 15.01 38.10 5.69
2359 3705 0.826256 ATCAATGATGGCTGCCGCAT 60.826 50.000 17.78 17.78 38.10 4.73
2360 3706 1.038681 TCAATGATGGCTGCCGCATT 61.039 50.000 24.91 24.91 38.10 3.56
2361 3707 0.874175 CAATGATGGCTGCCGCATTG 60.874 55.000 33.08 33.08 40.07 2.82
2362 3708 2.638330 AATGATGGCTGCCGCATTGC 62.638 55.000 27.85 10.68 38.10 3.56
2363 3709 4.580551 GATGGCTGCCGCATTGCC 62.581 66.667 14.98 15.14 46.26 4.52
2370 3716 4.629115 GCCGCATTGCCCGCATAC 62.629 66.667 2.41 0.00 0.00 2.39
2371 3717 2.901840 CCGCATTGCCCGCATACT 60.902 61.111 2.41 0.00 0.00 2.12
2372 3718 2.328989 CGCATTGCCCGCATACTG 59.671 61.111 2.41 0.00 0.00 2.74
2373 3719 2.179547 CGCATTGCCCGCATACTGA 61.180 57.895 2.41 0.00 0.00 3.41
2374 3720 1.356624 GCATTGCCCGCATACTGAC 59.643 57.895 0.00 0.00 0.00 3.51
2375 3721 2.024918 CATTGCCCGCATACTGACC 58.975 57.895 0.00 0.00 0.00 4.02
2376 3722 1.523711 ATTGCCCGCATACTGACCG 60.524 57.895 0.00 0.00 0.00 4.79
2377 3723 2.252072 ATTGCCCGCATACTGACCGT 62.252 55.000 0.00 0.00 0.00 4.83
2378 3724 2.585247 GCCCGCATACTGACCGTC 60.585 66.667 0.00 0.00 0.00 4.79
2379 3725 2.106332 CCCGCATACTGACCGTCC 59.894 66.667 0.00 0.00 0.00 4.79
2380 3726 2.423898 CCCGCATACTGACCGTCCT 61.424 63.158 0.00 0.00 0.00 3.85
2381 3727 1.515954 CCGCATACTGACCGTCCTT 59.484 57.895 0.00 0.00 0.00 3.36
2382 3728 0.742505 CCGCATACTGACCGTCCTTA 59.257 55.000 0.00 0.00 0.00 2.69
2383 3729 1.340248 CCGCATACTGACCGTCCTTAT 59.660 52.381 0.00 0.00 0.00 1.73
2384 3730 2.223971 CCGCATACTGACCGTCCTTATT 60.224 50.000 0.00 0.00 0.00 1.40
2385 3731 3.050619 CGCATACTGACCGTCCTTATTC 58.949 50.000 0.00 0.00 0.00 1.75
2386 3732 3.490249 CGCATACTGACCGTCCTTATTCA 60.490 47.826 0.00 0.00 0.00 2.57
2387 3733 4.632153 GCATACTGACCGTCCTTATTCAT 58.368 43.478 0.00 0.00 0.00 2.57
2388 3734 5.564063 CGCATACTGACCGTCCTTATTCATA 60.564 44.000 0.00 0.00 0.00 2.15
2389 3735 6.220930 GCATACTGACCGTCCTTATTCATAA 58.779 40.000 0.00 0.00 0.00 1.90
2390 3736 6.874134 GCATACTGACCGTCCTTATTCATAAT 59.126 38.462 0.00 0.00 0.00 1.28
2391 3737 7.063544 GCATACTGACCGTCCTTATTCATAATC 59.936 40.741 0.00 0.00 0.00 1.75
2392 3738 6.732896 ACTGACCGTCCTTATTCATAATCT 57.267 37.500 0.00 0.00 0.00 2.40
2393 3739 6.750148 ACTGACCGTCCTTATTCATAATCTC 58.250 40.000 0.00 0.00 0.00 2.75
2394 3740 6.097915 TGACCGTCCTTATTCATAATCTCC 57.902 41.667 0.00 0.00 0.00 3.71
2395 3741 5.600898 TGACCGTCCTTATTCATAATCTCCA 59.399 40.000 0.00 0.00 0.00 3.86
2396 3742 6.270000 TGACCGTCCTTATTCATAATCTCCAT 59.730 38.462 0.00 0.00 0.00 3.41
2397 3743 7.079451 ACCGTCCTTATTCATAATCTCCATT 57.921 36.000 0.00 0.00 0.00 3.16
2398 3744 8.202461 ACCGTCCTTATTCATAATCTCCATTA 57.798 34.615 0.00 0.00 0.00 1.90
2399 3745 8.314751 ACCGTCCTTATTCATAATCTCCATTAG 58.685 37.037 0.00 0.00 0.00 1.73
2400 3746 8.314751 CCGTCCTTATTCATAATCTCCATTAGT 58.685 37.037 0.00 0.00 0.00 2.24
2401 3747 9.712305 CGTCCTTATTCATAATCTCCATTAGTT 57.288 33.333 0.00 0.00 0.00 2.24
2407 3753 5.869579 TCATAATCTCCATTAGTTCCAGGC 58.130 41.667 0.00 0.00 0.00 4.85
2408 3754 3.584733 AATCTCCATTAGTTCCAGGCC 57.415 47.619 0.00 0.00 0.00 5.19
2409 3755 0.830648 TCTCCATTAGTTCCAGGCCG 59.169 55.000 0.00 0.00 0.00 6.13
2410 3756 0.541863 CTCCATTAGTTCCAGGCCGT 59.458 55.000 0.00 0.00 0.00 5.68
2411 3757 0.539986 TCCATTAGTTCCAGGCCGTC 59.460 55.000 0.00 0.00 0.00 4.79
2412 3758 0.810031 CCATTAGTTCCAGGCCGTCG 60.810 60.000 0.00 0.00 0.00 5.12
2413 3759 0.810031 CATTAGTTCCAGGCCGTCGG 60.810 60.000 6.99 6.99 0.00 4.79
2414 3760 0.974010 ATTAGTTCCAGGCCGTCGGA 60.974 55.000 17.49 7.44 0.00 4.55
2415 3761 1.186917 TTAGTTCCAGGCCGTCGGAA 61.187 55.000 17.49 17.40 38.99 4.30
2416 3762 0.974010 TAGTTCCAGGCCGTCGGAAT 60.974 55.000 22.25 15.17 43.03 3.01
2417 3763 1.376812 GTTCCAGGCCGTCGGAATT 60.377 57.895 22.25 0.00 43.03 2.17
2418 3764 0.108041 GTTCCAGGCCGTCGGAATTA 60.108 55.000 22.25 3.28 43.03 1.40
2419 3765 0.614294 TTCCAGGCCGTCGGAATTAA 59.386 50.000 17.49 0.00 36.36 1.40
2420 3766 0.108041 TCCAGGCCGTCGGAATTAAC 60.108 55.000 17.49 0.00 0.00 2.01
2421 3767 1.426041 CCAGGCCGTCGGAATTAACG 61.426 60.000 17.49 0.00 38.58 3.18
2422 3768 0.458889 CAGGCCGTCGGAATTAACGA 60.459 55.000 17.49 5.09 41.29 3.85
2431 3777 4.460948 TCGGAATTAACGACTAGCCTTT 57.539 40.909 1.01 0.00 35.12 3.11
2432 3778 4.824289 TCGGAATTAACGACTAGCCTTTT 58.176 39.130 1.01 0.00 35.12 2.27
2433 3779 5.964758 TCGGAATTAACGACTAGCCTTTTA 58.035 37.500 1.01 0.00 35.12 1.52
2434 3780 5.807011 TCGGAATTAACGACTAGCCTTTTAC 59.193 40.000 1.01 0.00 35.12 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.039852 GGAGGGGCTAAGAGCATATATAGC 59.960 50.000 0.21 0.00 44.75 2.97
8 9 5.211973 TGGAGGGGCTAAGAGCATATATAG 58.788 45.833 0.21 0.00 44.75 1.31
10 11 4.080313 TGGAGGGGCTAAGAGCATATAT 57.920 45.455 0.21 0.00 44.75 0.86
13 14 2.190398 TTGGAGGGGCTAAGAGCATA 57.810 50.000 0.21 0.00 44.75 3.14
29 30 1.202405 GGGCGACATGGCTTTATTTGG 60.202 52.381 0.00 0.00 44.11 3.28
33 34 0.751643 GTGGGGCGACATGGCTTTAT 60.752 55.000 0.00 0.00 44.11 1.40
42 43 1.003839 GATGTTGAGTGGGGCGACA 60.004 57.895 0.00 0.00 0.00 4.35
96 98 2.486636 TATCATCATCCGGCCGACGC 62.487 60.000 30.73 0.00 42.52 5.19
102 104 3.681897 GTCAGTTCATATCATCATCCGGC 59.318 47.826 0.00 0.00 0.00 6.13
106 108 5.632764 CAGACGGTCAGTTCATATCATCATC 59.367 44.000 11.27 0.00 0.00 2.92
107 109 5.510349 CCAGACGGTCAGTTCATATCATCAT 60.510 44.000 11.27 0.00 0.00 2.45
130 136 0.815615 GATCCATCCAACAGTCGGCC 60.816 60.000 0.00 0.00 0.00 6.13
151 157 9.754382 GTGGCAGTTGATTGAATGATTATTATT 57.246 29.630 0.00 0.00 0.00 1.40
160 166 2.226200 TCACGTGGCAGTTGATTGAATG 59.774 45.455 17.00 0.00 0.00 2.67
161 167 2.485426 CTCACGTGGCAGTTGATTGAAT 59.515 45.455 17.00 0.00 0.00 2.57
163 169 1.202639 ACTCACGTGGCAGTTGATTGA 60.203 47.619 17.00 0.00 0.00 2.57
164 170 1.069703 CACTCACGTGGCAGTTGATTG 60.070 52.381 17.00 0.00 37.50 2.67
165 171 1.229428 CACTCACGTGGCAGTTGATT 58.771 50.000 17.00 0.00 37.50 2.57
166 172 0.106708 ACACTCACGTGGCAGTTGAT 59.893 50.000 17.00 0.00 45.50 2.57
167 173 1.520192 ACACTCACGTGGCAGTTGA 59.480 52.632 17.00 0.00 45.50 3.18
168 174 4.124910 ACACTCACGTGGCAGTTG 57.875 55.556 17.00 9.82 45.50 3.16
185 191 9.480053 GTACACTAACCTTGTTACATAAAGTGA 57.520 33.333 15.49 3.40 36.27 3.41
188 194 7.116662 TGCGTACACTAACCTTGTTACATAAAG 59.883 37.037 0.00 0.00 0.00 1.85
190 196 6.365789 GTGCGTACACTAACCTTGTTACATAA 59.634 38.462 0.00 0.00 43.85 1.90
191 197 5.863397 GTGCGTACACTAACCTTGTTACATA 59.137 40.000 0.00 0.00 43.85 2.29
210 216 0.250684 TGTTGATGTGGGATGTGCGT 60.251 50.000 0.00 0.00 0.00 5.24
214 221 3.265221 AGAGTCATGTTGATGTGGGATGT 59.735 43.478 0.00 0.00 0.00 3.06
220 227 4.692155 TGTAGCAAGAGTCATGTTGATGTG 59.308 41.667 0.00 0.00 31.41 3.21
223 230 6.262944 TGTTTTGTAGCAAGAGTCATGTTGAT 59.737 34.615 0.00 0.00 31.41 2.57
224 231 5.588246 TGTTTTGTAGCAAGAGTCATGTTGA 59.412 36.000 0.00 0.00 31.41 3.18
225 232 5.820131 TGTTTTGTAGCAAGAGTCATGTTG 58.180 37.500 0.00 0.00 32.93 3.33
230 237 4.072131 GGGATGTTTTGTAGCAAGAGTCA 58.928 43.478 0.00 0.00 0.00 3.41
233 240 3.334691 TCGGGATGTTTTGTAGCAAGAG 58.665 45.455 0.00 0.00 0.00 2.85
249 256 2.707257 GGGGTGGAAATATAGTTCGGGA 59.293 50.000 6.82 0.00 0.00 5.14
252 259 3.464111 ACGGGGTGGAAATATAGTTCG 57.536 47.619 6.82 0.00 0.00 3.95
256 263 5.297527 GGTTTGTAACGGGGTGGAAATATAG 59.702 44.000 0.00 0.00 0.00 1.31
258 265 4.018490 GGTTTGTAACGGGGTGGAAATAT 58.982 43.478 0.00 0.00 0.00 1.28
260 267 2.241160 GGTTTGTAACGGGGTGGAAAT 58.759 47.619 0.00 0.00 0.00 2.17
288 299 4.662468 TGTTTTGGAAGCATTTGTGCTA 57.338 36.364 3.04 0.00 45.54 3.49
290 301 4.143052 GCTATGTTTTGGAAGCATTTGTGC 60.143 41.667 0.00 0.00 35.05 4.57
298 309 5.346011 GCAACTAAAGCTATGTTTTGGAAGC 59.654 40.000 0.00 0.00 35.16 3.86
299 310 6.446318 TGCAACTAAAGCTATGTTTTGGAAG 58.554 36.000 0.00 0.00 0.00 3.46
381 395 3.134081 GCCTACACCATAGCCTAGTTTGA 59.866 47.826 0.00 0.00 0.00 2.69
382 396 3.134804 AGCCTACACCATAGCCTAGTTTG 59.865 47.826 0.00 0.00 0.00 2.93
398 412 2.125512 CGACCCACAGCAGCCTAC 60.126 66.667 0.00 0.00 0.00 3.18
438 452 4.436998 GTCGACCGCCTCCACCAG 62.437 72.222 3.51 0.00 0.00 4.00
440 454 4.736896 GTGTCGACCGCCTCCACC 62.737 72.222 14.12 0.00 0.00 4.61
473 487 3.585862 GGAGACGCTTGTGTTCATCTAA 58.414 45.455 0.00 0.00 0.00 2.10
474 488 3.232213 GGAGACGCTTGTGTTCATCTA 57.768 47.619 0.00 0.00 0.00 1.98
543 557 2.577449 ACAACAAGGGCGTGAAAAAG 57.423 45.000 0.00 0.00 0.00 2.27
544 558 3.280295 TCTACAACAAGGGCGTGAAAAA 58.720 40.909 0.00 0.00 0.00 1.94
575 589 5.407084 TCGAAGAAAGAACATGTTATTGCGA 59.593 36.000 18.53 19.34 0.00 5.10
588 602 7.173218 ACATGCTATTGTTCTTCGAAGAAAGAA 59.827 33.333 35.46 29.44 45.77 2.52
594 608 8.177663 ACAAATACATGCTATTGTTCTTCGAAG 58.822 33.333 19.35 19.35 32.37 3.79
617 631 3.618997 GCTGAATCTTCGGGTCCTTACAA 60.619 47.826 1.19 0.00 34.12 2.41
680 718 5.359576 TCATGCTCACCAACTAAACTTGTTT 59.640 36.000 4.14 4.14 0.00 2.83
696 734 2.493278 TGAGTCGAATCTGTCATGCTCA 59.507 45.455 14.66 2.77 0.00 4.26
710 748 3.498397 GGAAGAAAATTGCACTGAGTCGA 59.502 43.478 0.00 0.00 0.00 4.20
720 758 1.606606 CGAGCACGGAAGAAAATTGC 58.393 50.000 0.00 0.00 35.72 3.56
723 761 0.605319 TGGCGAGCACGGAAGAAAAT 60.605 50.000 5.52 0.00 40.15 1.82
752 801 6.373779 CAATTTATATTGGCGTGAGGATGAC 58.626 40.000 0.00 0.00 37.97 3.06
776 825 5.402464 ACAAATCAAACGTTTTTCATGGC 57.598 34.783 11.66 0.00 0.00 4.40
815 864 9.860898 GAAATGCTAAAGATCTGGTGTTAATTT 57.139 29.630 0.00 0.00 0.00 1.82
824 873 6.870769 ACAAATGGAAATGCTAAAGATCTGG 58.129 36.000 0.00 0.00 0.00 3.86
830 879 8.586273 CAACGATTACAAATGGAAATGCTAAAG 58.414 33.333 0.00 0.00 0.00 1.85
943 1337 2.045524 TGAACACTTGGTACCCCGTTA 58.954 47.619 10.07 0.00 0.00 3.18
944 1338 0.838608 TGAACACTTGGTACCCCGTT 59.161 50.000 10.07 7.23 0.00 4.44
946 1340 1.232119 GTTGAACACTTGGTACCCCG 58.768 55.000 10.07 2.44 0.00 5.73
949 1343 3.492011 CAGTACGTTGAACACTTGGTACC 59.508 47.826 4.43 4.43 32.72 3.34
950 1344 4.114794 ACAGTACGTTGAACACTTGGTAC 58.885 43.478 0.00 0.00 0.00 3.34
951 1345 4.362279 GACAGTACGTTGAACACTTGGTA 58.638 43.478 0.00 0.00 0.00 3.25
952 1346 3.192466 GACAGTACGTTGAACACTTGGT 58.808 45.455 0.00 0.00 0.00 3.67
953 1347 2.542595 GGACAGTACGTTGAACACTTGG 59.457 50.000 0.00 0.00 0.00 3.61
954 1348 2.542595 GGGACAGTACGTTGAACACTTG 59.457 50.000 0.00 0.00 0.00 3.16
955 1349 2.433239 AGGGACAGTACGTTGAACACTT 59.567 45.455 0.00 0.00 0.00 3.16
956 1350 2.035576 GAGGGACAGTACGTTGAACACT 59.964 50.000 0.00 0.00 0.00 3.55
957 1351 2.401351 GAGGGACAGTACGTTGAACAC 58.599 52.381 0.00 0.00 0.00 3.32
958 1352 1.342174 GGAGGGACAGTACGTTGAACA 59.658 52.381 0.00 0.00 0.00 3.18
959 1353 1.337541 GGGAGGGACAGTACGTTGAAC 60.338 57.143 0.00 0.00 0.00 3.18
960 1354 0.971386 GGGAGGGACAGTACGTTGAA 59.029 55.000 0.00 0.00 0.00 2.69
961 1355 0.901580 GGGGAGGGACAGTACGTTGA 60.902 60.000 0.00 0.00 0.00 3.18
962 1356 1.189524 TGGGGAGGGACAGTACGTTG 61.190 60.000 0.00 0.00 0.00 4.10
963 1357 0.472352 TTGGGGAGGGACAGTACGTT 60.472 55.000 0.00 0.00 0.00 3.99
1244 1638 1.172812 GGTGAACACAAGCTGGACCC 61.173 60.000 0.00 0.00 0.00 4.46
1431 1825 3.694364 CAGCCAGCCTGTCGATTAT 57.306 52.632 0.00 0.00 36.79 1.28
1481 1875 2.221055 CGAGTAACAAGGACAGCACAAC 59.779 50.000 0.00 0.00 0.00 3.32
1491 1885 5.519722 AGAAAAATGCAACGAGTAACAAGG 58.480 37.500 0.00 0.00 0.00 3.61
1492 1886 5.336990 CGAGAAAAATGCAACGAGTAACAAG 59.663 40.000 0.00 0.00 0.00 3.16
1514 1909 5.163784 GCACTAGTACATACTCAAGTGACGA 60.164 44.000 19.44 0.00 41.82 4.20
1597 1994 2.090658 GCGTACGCAATCGATAATCCTG 59.909 50.000 33.90 0.00 41.49 3.86
1708 2105 1.991121 ATGCCACCTTATGCATGAGG 58.009 50.000 30.52 30.52 45.96 3.86
1857 2359 5.815581 ACAGGCTAATCACAAACAGGATTA 58.184 37.500 0.00 0.00 35.49 1.75
1866 2368 9.778741 CCTAAAATATAGACAGGCTAATCACAA 57.221 33.333 0.00 0.00 31.66 3.33
1968 3314 8.273780 ACTAAGCATCATTCCTTAAAACTCAG 57.726 34.615 0.00 0.00 0.00 3.35
1969 3315 9.733556 TTACTAAGCATCATTCCTTAAAACTCA 57.266 29.630 0.00 0.00 0.00 3.41
2002 3348 3.181438 TGGAGTGCTTTGGCTAACCTTAA 60.181 43.478 0.00 0.00 39.59 1.85
2003 3349 2.373836 TGGAGTGCTTTGGCTAACCTTA 59.626 45.455 0.00 0.00 39.59 2.69
2014 3360 0.109342 CCTGTCAGGTGGAGTGCTTT 59.891 55.000 11.09 0.00 0.00 3.51
2065 3411 3.793827 AGAGAGGGAGAGGAGAAGAATCT 59.206 47.826 0.00 0.00 39.10 2.40
2066 3412 4.141158 AGAGAGAGGGAGAGGAGAAGAATC 60.141 50.000 0.00 0.00 0.00 2.52
2067 3413 3.793827 AGAGAGAGGGAGAGGAGAAGAAT 59.206 47.826 0.00 0.00 0.00 2.40
2068 3414 3.197983 AGAGAGAGGGAGAGGAGAAGAA 58.802 50.000 0.00 0.00 0.00 2.52
2069 3415 2.858644 AGAGAGAGGGAGAGGAGAAGA 58.141 52.381 0.00 0.00 0.00 2.87
2070 3416 3.669939 AAGAGAGAGGGAGAGGAGAAG 57.330 52.381 0.00 0.00 0.00 2.85
2071 3417 3.309556 GGAAAGAGAGAGGGAGAGGAGAA 60.310 52.174 0.00 0.00 0.00 2.87
2072 3418 2.243736 GGAAAGAGAGAGGGAGAGGAGA 59.756 54.545 0.00 0.00 0.00 3.71
2073 3419 2.666317 GGAAAGAGAGAGGGAGAGGAG 58.334 57.143 0.00 0.00 0.00 3.69
2074 3420 1.064314 CGGAAAGAGAGAGGGAGAGGA 60.064 57.143 0.00 0.00 0.00 3.71
2075 3421 1.398692 CGGAAAGAGAGAGGGAGAGG 58.601 60.000 0.00 0.00 0.00 3.69
2076 3422 1.341581 ACCGGAAAGAGAGAGGGAGAG 60.342 57.143 9.46 0.00 0.00 3.20
2077 3423 0.705253 ACCGGAAAGAGAGAGGGAGA 59.295 55.000 9.46 0.00 0.00 3.71
2078 3424 1.562783 AACCGGAAAGAGAGAGGGAG 58.437 55.000 9.46 0.00 0.00 4.30
2079 3425 1.623811 CAAACCGGAAAGAGAGAGGGA 59.376 52.381 9.46 0.00 0.00 4.20
2080 3426 1.348036 ACAAACCGGAAAGAGAGAGGG 59.652 52.381 9.46 0.00 0.00 4.30
2081 3427 2.841442 ACAAACCGGAAAGAGAGAGG 57.159 50.000 9.46 0.00 0.00 3.69
2082 3428 5.135508 TCTAACAAACCGGAAAGAGAGAG 57.864 43.478 9.46 0.00 0.00 3.20
2083 3429 5.540400 TTCTAACAAACCGGAAAGAGAGA 57.460 39.130 9.46 0.53 0.00 3.10
2084 3430 6.803154 ATTTCTAACAAACCGGAAAGAGAG 57.197 37.500 9.46 0.00 32.41 3.20
2085 3431 7.389607 CCTTATTTCTAACAAACCGGAAAGAGA 59.610 37.037 9.46 0.00 32.41 3.10
2086 3432 7.389607 TCCTTATTTCTAACAAACCGGAAAGAG 59.610 37.037 9.46 0.00 32.41 2.85
2087 3433 7.225725 TCCTTATTTCTAACAAACCGGAAAGA 58.774 34.615 9.46 0.00 32.41 2.52
2088 3434 7.443259 TCCTTATTTCTAACAAACCGGAAAG 57.557 36.000 9.46 0.00 32.41 2.62
2089 3435 7.820578 TTCCTTATTTCTAACAAACCGGAAA 57.179 32.000 9.46 0.00 33.23 3.13
2090 3436 7.121611 GGATTCCTTATTTCTAACAAACCGGAA 59.878 37.037 9.46 0.00 0.00 4.30
2091 3437 6.600427 GGATTCCTTATTTCTAACAAACCGGA 59.400 38.462 9.46 0.00 0.00 5.14
2092 3438 6.376018 TGGATTCCTTATTTCTAACAAACCGG 59.624 38.462 0.00 0.00 0.00 5.28
2093 3439 7.385778 TGGATTCCTTATTTCTAACAAACCG 57.614 36.000 3.95 0.00 0.00 4.44
2127 3473 7.712204 AAGAGGGAGTTTTAGTTGTCAAAAA 57.288 32.000 0.00 0.00 0.00 1.94
2128 3474 7.712204 AAAGAGGGAGTTTTAGTTGTCAAAA 57.288 32.000 0.00 0.00 0.00 2.44
2129 3475 8.990163 ATAAAGAGGGAGTTTTAGTTGTCAAA 57.010 30.769 0.00 0.00 0.00 2.69
2130 3476 8.990163 AATAAAGAGGGAGTTTTAGTTGTCAA 57.010 30.769 0.00 0.00 0.00 3.18
2131 3477 8.215050 TGAATAAAGAGGGAGTTTTAGTTGTCA 58.785 33.333 0.00 0.00 0.00 3.58
2132 3478 8.617290 TGAATAAAGAGGGAGTTTTAGTTGTC 57.383 34.615 0.00 0.00 0.00 3.18
2133 3479 9.588096 AATGAATAAAGAGGGAGTTTTAGTTGT 57.412 29.630 0.00 0.00 0.00 3.32
2134 3480 9.846248 CAATGAATAAAGAGGGAGTTTTAGTTG 57.154 33.333 0.00 0.00 0.00 3.16
2135 3481 9.025041 CCAATGAATAAAGAGGGAGTTTTAGTT 57.975 33.333 0.00 0.00 0.00 2.24
2136 3482 8.170730 ACCAATGAATAAAGAGGGAGTTTTAGT 58.829 33.333 0.00 0.00 0.00 2.24
2137 3483 8.462016 CACCAATGAATAAAGAGGGAGTTTTAG 58.538 37.037 0.00 0.00 0.00 1.85
2138 3484 8.167392 TCACCAATGAATAAAGAGGGAGTTTTA 58.833 33.333 0.00 0.00 0.00 1.52
2139 3485 7.010160 TCACCAATGAATAAAGAGGGAGTTTT 58.990 34.615 0.00 0.00 0.00 2.43
2140 3486 6.552008 TCACCAATGAATAAAGAGGGAGTTT 58.448 36.000 0.00 0.00 0.00 2.66
2141 3487 6.139679 TCACCAATGAATAAAGAGGGAGTT 57.860 37.500 0.00 0.00 0.00 3.01
2142 3488 5.779241 TCACCAATGAATAAAGAGGGAGT 57.221 39.130 0.00 0.00 0.00 3.85
2143 3489 7.775093 TGTTATCACCAATGAATAAAGAGGGAG 59.225 37.037 0.00 0.00 38.69 4.30
2144 3490 7.556275 GTGTTATCACCAATGAATAAAGAGGGA 59.444 37.037 0.00 0.00 38.69 4.20
2145 3491 7.707104 GTGTTATCACCAATGAATAAAGAGGG 58.293 38.462 0.00 0.00 38.69 4.30
2166 3512 8.101419 CCTCCTTTACTTAAAGATGTAGGTGTT 58.899 37.037 9.86 0.00 44.07 3.32
2167 3513 7.456902 TCCTCCTTTACTTAAAGATGTAGGTGT 59.543 37.037 9.86 0.00 44.07 4.16
2168 3514 7.848128 TCCTCCTTTACTTAAAGATGTAGGTG 58.152 38.462 9.86 0.00 44.07 4.00
2169 3515 8.445361 TTCCTCCTTTACTTAAAGATGTAGGT 57.555 34.615 9.86 0.00 44.07 3.08
2170 3516 8.759782 TCTTCCTCCTTTACTTAAAGATGTAGG 58.240 37.037 9.86 10.11 44.07 3.18
2173 3519 7.608376 GCTTCTTCCTCCTTTACTTAAAGATGT 59.392 37.037 9.86 0.00 44.07 3.06
2174 3520 7.826744 AGCTTCTTCCTCCTTTACTTAAAGATG 59.173 37.037 9.86 3.19 44.07 2.90
2175 3521 7.923461 AGCTTCTTCCTCCTTTACTTAAAGAT 58.077 34.615 9.86 0.00 44.07 2.40
2176 3522 7.016268 TGAGCTTCTTCCTCCTTTACTTAAAGA 59.984 37.037 9.86 0.00 44.07 2.52
2177 3523 7.162082 TGAGCTTCTTCCTCCTTTACTTAAAG 58.838 38.462 2.23 2.23 41.70 1.85
2178 3524 7.074653 TGAGCTTCTTCCTCCTTTACTTAAA 57.925 36.000 0.00 0.00 0.00 1.52
2179 3525 6.681729 TGAGCTTCTTCCTCCTTTACTTAA 57.318 37.500 0.00 0.00 0.00 1.85
2180 3526 6.875972 ATGAGCTTCTTCCTCCTTTACTTA 57.124 37.500 0.00 0.00 0.00 2.24
2181 3527 5.770685 ATGAGCTTCTTCCTCCTTTACTT 57.229 39.130 0.00 0.00 0.00 2.24
2182 3528 5.770685 AATGAGCTTCTTCCTCCTTTACT 57.229 39.130 0.00 0.00 0.00 2.24
2183 3529 6.052360 CCTAATGAGCTTCTTCCTCCTTTAC 58.948 44.000 0.00 0.00 0.00 2.01
2184 3530 5.964477 TCCTAATGAGCTTCTTCCTCCTTTA 59.036 40.000 0.00 0.00 0.00 1.85
2185 3531 4.785376 TCCTAATGAGCTTCTTCCTCCTTT 59.215 41.667 0.00 0.00 0.00 3.11
2186 3532 4.366267 TCCTAATGAGCTTCTTCCTCCTT 58.634 43.478 0.00 0.00 0.00 3.36
2187 3533 3.966665 CTCCTAATGAGCTTCTTCCTCCT 59.033 47.826 0.00 0.00 33.47 3.69
2188 3534 4.335400 CTCCTAATGAGCTTCTTCCTCC 57.665 50.000 0.00 0.00 33.47 4.30
2199 3545 6.320672 AGTGGATTGAAATTGCTCCTAATGAG 59.679 38.462 0.00 0.00 44.47 2.90
2200 3546 6.189859 AGTGGATTGAAATTGCTCCTAATGA 58.810 36.000 0.00 0.00 0.00 2.57
2201 3547 6.095860 TGAGTGGATTGAAATTGCTCCTAATG 59.904 38.462 0.00 0.00 0.00 1.90
2202 3548 6.096001 GTGAGTGGATTGAAATTGCTCCTAAT 59.904 38.462 0.00 0.00 0.00 1.73
2203 3549 5.415701 GTGAGTGGATTGAAATTGCTCCTAA 59.584 40.000 0.00 0.00 0.00 2.69
2204 3550 4.943705 GTGAGTGGATTGAAATTGCTCCTA 59.056 41.667 0.00 0.00 0.00 2.94
2205 3551 3.760684 GTGAGTGGATTGAAATTGCTCCT 59.239 43.478 0.00 0.00 0.00 3.69
2206 3552 3.760684 AGTGAGTGGATTGAAATTGCTCC 59.239 43.478 0.00 0.00 0.00 4.70
2207 3553 5.048504 TGAAGTGAGTGGATTGAAATTGCTC 60.049 40.000 0.00 0.00 0.00 4.26
2208 3554 4.828939 TGAAGTGAGTGGATTGAAATTGCT 59.171 37.500 0.00 0.00 0.00 3.91
2209 3555 5.048504 TCTGAAGTGAGTGGATTGAAATTGC 60.049 40.000 0.00 0.00 0.00 3.56
2210 3556 6.564709 TCTGAAGTGAGTGGATTGAAATTG 57.435 37.500 0.00 0.00 0.00 2.32
2211 3557 7.771927 ATTCTGAAGTGAGTGGATTGAAATT 57.228 32.000 0.00 0.00 0.00 1.82
2212 3558 7.771927 AATTCTGAAGTGAGTGGATTGAAAT 57.228 32.000 0.00 0.00 0.00 2.17
2213 3559 7.587037 AAATTCTGAAGTGAGTGGATTGAAA 57.413 32.000 0.00 0.00 0.00 2.69
2214 3560 8.156820 TCTAAATTCTGAAGTGAGTGGATTGAA 58.843 33.333 2.40 0.00 0.00 2.69
2215 3561 7.679783 TCTAAATTCTGAAGTGAGTGGATTGA 58.320 34.615 2.40 0.00 0.00 2.57
2216 3562 7.912056 TCTAAATTCTGAAGTGAGTGGATTG 57.088 36.000 2.40 0.00 0.00 2.67
2217 3563 8.547173 AGATCTAAATTCTGAAGTGAGTGGATT 58.453 33.333 0.00 0.00 0.00 3.01
2218 3564 8.088463 AGATCTAAATTCTGAAGTGAGTGGAT 57.912 34.615 0.00 0.00 0.00 3.41
2219 3565 7.487822 AGATCTAAATTCTGAAGTGAGTGGA 57.512 36.000 0.00 0.00 0.00 4.02
2220 3566 7.437862 GCTAGATCTAAATTCTGAAGTGAGTGG 59.562 40.741 3.57 0.00 0.00 4.00
2221 3567 8.196771 AGCTAGATCTAAATTCTGAAGTGAGTG 58.803 37.037 3.57 0.00 0.00 3.51
2222 3568 8.305046 AGCTAGATCTAAATTCTGAAGTGAGT 57.695 34.615 3.57 0.00 0.00 3.41
2223 3569 9.677567 GTAGCTAGATCTAAATTCTGAAGTGAG 57.322 37.037 3.57 0.00 0.00 3.51
2224 3570 9.190317 TGTAGCTAGATCTAAATTCTGAAGTGA 57.810 33.333 3.57 0.00 0.00 3.41
2225 3571 9.243637 GTGTAGCTAGATCTAAATTCTGAAGTG 57.756 37.037 3.57 0.00 0.00 3.16
2226 3572 9.196139 AGTGTAGCTAGATCTAAATTCTGAAGT 57.804 33.333 3.57 0.00 0.00 3.01
2246 3592 6.758416 TGTTGCTCATGAATTAGCTAGTGTAG 59.242 38.462 0.00 0.00 39.53 2.74
2247 3593 6.639563 TGTTGCTCATGAATTAGCTAGTGTA 58.360 36.000 0.00 0.00 39.53 2.90
2248 3594 5.491070 TGTTGCTCATGAATTAGCTAGTGT 58.509 37.500 0.00 0.00 39.53 3.55
2249 3595 6.253746 GTTGTTGCTCATGAATTAGCTAGTG 58.746 40.000 0.00 0.00 39.53 2.74
2250 3596 5.063944 CGTTGTTGCTCATGAATTAGCTAGT 59.936 40.000 0.00 0.00 39.53 2.57
2251 3597 5.063944 ACGTTGTTGCTCATGAATTAGCTAG 59.936 40.000 0.00 0.00 39.53 3.42
2252 3598 4.935205 ACGTTGTTGCTCATGAATTAGCTA 59.065 37.500 0.00 0.00 39.53 3.32
2253 3599 3.753272 ACGTTGTTGCTCATGAATTAGCT 59.247 39.130 0.00 0.00 39.53 3.32
2254 3600 4.083581 ACGTTGTTGCTCATGAATTAGC 57.916 40.909 0.00 0.00 39.25 3.09
2255 3601 6.366644 CAAACGTTGTTGCTCATGAATTAG 57.633 37.500 0.00 0.00 0.00 1.73
2267 3613 3.807622 TCCTAGAGAAGCAAACGTTGTTG 59.192 43.478 0.00 0.00 0.00 3.33
2268 3614 3.808174 GTCCTAGAGAAGCAAACGTTGTT 59.192 43.478 0.00 0.00 0.00 2.83
2269 3615 3.181469 TGTCCTAGAGAAGCAAACGTTGT 60.181 43.478 0.00 0.00 0.00 3.32
2270 3616 3.390135 TGTCCTAGAGAAGCAAACGTTG 58.610 45.455 0.00 0.00 0.00 4.10
2271 3617 3.746045 TGTCCTAGAGAAGCAAACGTT 57.254 42.857 0.00 0.00 0.00 3.99
2272 3618 3.746045 TTGTCCTAGAGAAGCAAACGT 57.254 42.857 0.00 0.00 0.00 3.99
2273 3619 5.613358 ATTTTGTCCTAGAGAAGCAAACG 57.387 39.130 0.00 0.00 0.00 3.60
2274 3620 6.970484 TGAATTTTGTCCTAGAGAAGCAAAC 58.030 36.000 0.00 0.00 0.00 2.93
2275 3621 7.581213 TTGAATTTTGTCCTAGAGAAGCAAA 57.419 32.000 0.00 0.00 0.00 3.68
2276 3622 7.425606 GTTTGAATTTTGTCCTAGAGAAGCAA 58.574 34.615 0.00 0.00 0.00 3.91
2277 3623 6.016276 GGTTTGAATTTTGTCCTAGAGAAGCA 60.016 38.462 0.00 0.00 0.00 3.91
2278 3624 6.382608 GGTTTGAATTTTGTCCTAGAGAAGC 58.617 40.000 0.00 0.00 0.00 3.86
2279 3625 6.426937 TCGGTTTGAATTTTGTCCTAGAGAAG 59.573 38.462 0.00 0.00 0.00 2.85
2280 3626 6.292923 TCGGTTTGAATTTTGTCCTAGAGAA 58.707 36.000 0.00 0.00 0.00 2.87
2281 3627 5.860611 TCGGTTTGAATTTTGTCCTAGAGA 58.139 37.500 0.00 0.00 0.00 3.10
2282 3628 6.554334 TTCGGTTTGAATTTTGTCCTAGAG 57.446 37.500 0.00 0.00 0.00 2.43
2295 3641 7.148222 TGTGAGTTTAGTTCAATTCGGTTTGAA 60.148 33.333 8.88 8.88 41.92 2.69
2296 3642 6.316640 TGTGAGTTTAGTTCAATTCGGTTTGA 59.683 34.615 0.00 0.00 33.89 2.69
2297 3643 6.491394 TGTGAGTTTAGTTCAATTCGGTTTG 58.509 36.000 0.00 0.00 0.00 2.93
2298 3644 6.687081 TGTGAGTTTAGTTCAATTCGGTTT 57.313 33.333 0.00 0.00 0.00 3.27
2299 3645 6.668323 CATGTGAGTTTAGTTCAATTCGGTT 58.332 36.000 0.00 0.00 0.00 4.44
2300 3646 5.334879 GCATGTGAGTTTAGTTCAATTCGGT 60.335 40.000 0.00 0.00 0.00 4.69
2301 3647 5.088739 GCATGTGAGTTTAGTTCAATTCGG 58.911 41.667 0.00 0.00 0.00 4.30
2302 3648 5.088739 GGCATGTGAGTTTAGTTCAATTCG 58.911 41.667 0.00 0.00 0.00 3.34
2303 3649 6.012658 TGGCATGTGAGTTTAGTTCAATTC 57.987 37.500 0.00 0.00 0.00 2.17
2304 3650 6.040842 ACTTGGCATGTGAGTTTAGTTCAATT 59.959 34.615 5.09 0.00 0.00 2.32
2305 3651 5.536161 ACTTGGCATGTGAGTTTAGTTCAAT 59.464 36.000 5.09 0.00 0.00 2.57
2306 3652 4.887071 ACTTGGCATGTGAGTTTAGTTCAA 59.113 37.500 5.09 0.00 0.00 2.69
2307 3653 4.275689 CACTTGGCATGTGAGTTTAGTTCA 59.724 41.667 24.62 0.00 37.60 3.18
2308 3654 4.320494 CCACTTGGCATGTGAGTTTAGTTC 60.320 45.833 28.92 0.00 37.60 3.01
2309 3655 3.569701 CCACTTGGCATGTGAGTTTAGTT 59.430 43.478 28.92 0.00 37.60 2.24
2310 3656 3.149196 CCACTTGGCATGTGAGTTTAGT 58.851 45.455 28.92 6.01 37.60 2.24
2311 3657 3.149196 ACCACTTGGCATGTGAGTTTAG 58.851 45.455 28.92 16.21 39.32 1.85
2312 3658 3.222173 ACCACTTGGCATGTGAGTTTA 57.778 42.857 28.92 0.00 39.32 2.01
2313 3659 2.071778 ACCACTTGGCATGTGAGTTT 57.928 45.000 28.92 11.54 39.32 2.66
2314 3660 2.884639 GTTACCACTTGGCATGTGAGTT 59.115 45.455 28.92 17.18 39.32 3.01
2315 3661 2.158682 TGTTACCACTTGGCATGTGAGT 60.159 45.455 28.92 24.84 39.32 3.41
2316 3662 2.503331 TGTTACCACTTGGCATGTGAG 58.497 47.619 28.92 21.50 39.32 3.51
2317 3663 2.621055 GTTGTTACCACTTGGCATGTGA 59.379 45.455 28.92 11.94 39.32 3.58
2318 3664 2.288152 GGTTGTTACCACTTGGCATGTG 60.288 50.000 22.64 22.64 44.36 3.21
2319 3665 1.960689 GGTTGTTACCACTTGGCATGT 59.039 47.619 0.00 0.00 44.36 3.21
2320 3666 2.723124 GGTTGTTACCACTTGGCATG 57.277 50.000 0.00 0.00 44.36 4.06
2339 3685 1.007734 GCGGCAGCCATCATTGATG 60.008 57.895 18.00 18.00 39.52 3.07
2340 3686 0.826256 ATGCGGCAGCCATCATTGAT 60.826 50.000 13.30 0.00 44.33 2.57
2341 3687 1.038681 AATGCGGCAGCCATCATTGA 61.039 50.000 21.86 0.00 44.33 2.57
2342 3688 0.874175 CAATGCGGCAGCCATCATTG 60.874 55.000 28.25 28.25 44.33 2.82
2343 3689 1.440060 CAATGCGGCAGCCATCATT 59.560 52.632 18.56 18.56 44.33 2.57
2344 3690 3.125607 CAATGCGGCAGCCATCAT 58.874 55.556 13.30 11.23 44.33 2.45
2345 3691 3.829044 GCAATGCGGCAGCCATCA 61.829 61.111 13.30 9.15 44.33 3.07
2353 3699 4.629115 GTATGCGGGCAATGCGGC 62.629 66.667 12.04 12.04 40.20 6.53
2354 3700 2.901840 AGTATGCGGGCAATGCGG 60.902 61.111 0.00 0.00 34.24 5.69
2355 3701 2.179547 TCAGTATGCGGGCAATGCG 61.180 57.895 0.00 0.00 34.76 4.73
2356 3702 1.356624 GTCAGTATGCGGGCAATGC 59.643 57.895 0.00 0.00 34.76 3.56
2357 3703 1.775039 CGGTCAGTATGCGGGCAATG 61.775 60.000 0.00 0.00 34.76 2.82
2358 3704 1.523711 CGGTCAGTATGCGGGCAAT 60.524 57.895 0.00 0.00 34.76 3.56
2359 3705 2.125310 CGGTCAGTATGCGGGCAA 60.125 61.111 0.00 0.00 34.76 4.52
2360 3706 3.365291 GACGGTCAGTATGCGGGCA 62.365 63.158 2.62 0.00 34.76 5.36
2361 3707 2.585247 GACGGTCAGTATGCGGGC 60.585 66.667 2.62 0.00 34.76 6.13
2362 3708 1.956629 AAGGACGGTCAGTATGCGGG 61.957 60.000 10.76 0.00 34.76 6.13
2363 3709 0.742505 TAAGGACGGTCAGTATGCGG 59.257 55.000 10.76 0.00 34.76 5.69
2364 3710 2.795175 ATAAGGACGGTCAGTATGCG 57.205 50.000 10.76 0.00 34.76 4.73
2365 3711 4.054780 TGAATAAGGACGGTCAGTATGC 57.945 45.455 10.76 5.99 34.76 3.14
2366 3712 8.307483 AGATTATGAATAAGGACGGTCAGTATG 58.693 37.037 10.76 0.00 37.54 2.39
2367 3713 8.423906 AGATTATGAATAAGGACGGTCAGTAT 57.576 34.615 10.76 3.94 0.00 2.12
2368 3714 7.039923 GGAGATTATGAATAAGGACGGTCAGTA 60.040 40.741 10.76 1.59 0.00 2.74
2369 3715 6.239345 GGAGATTATGAATAAGGACGGTCAGT 60.239 42.308 10.76 0.00 0.00 3.41
2370 3716 6.159988 GGAGATTATGAATAAGGACGGTCAG 58.840 44.000 10.76 0.00 0.00 3.51
2371 3717 5.600898 TGGAGATTATGAATAAGGACGGTCA 59.399 40.000 10.76 0.00 0.00 4.02
2372 3718 6.097915 TGGAGATTATGAATAAGGACGGTC 57.902 41.667 0.00 0.00 0.00 4.79
2373 3719 6.688073 ATGGAGATTATGAATAAGGACGGT 57.312 37.500 0.00 0.00 0.00 4.83
2374 3720 8.314751 ACTAATGGAGATTATGAATAAGGACGG 58.685 37.037 0.00 0.00 0.00 4.79
2375 3721 9.712305 AACTAATGGAGATTATGAATAAGGACG 57.288 33.333 0.00 0.00 0.00 4.79
2381 3727 8.103305 GCCTGGAACTAATGGAGATTATGAATA 58.897 37.037 0.00 0.00 0.00 1.75
2382 3728 6.944862 GCCTGGAACTAATGGAGATTATGAAT 59.055 38.462 0.00 0.00 0.00 2.57
2383 3729 6.299141 GCCTGGAACTAATGGAGATTATGAA 58.701 40.000 0.00 0.00 0.00 2.57
2384 3730 5.221925 GGCCTGGAACTAATGGAGATTATGA 60.222 44.000 0.00 0.00 0.00 2.15
2385 3731 5.006386 GGCCTGGAACTAATGGAGATTATG 58.994 45.833 0.00 0.00 0.00 1.90
2386 3732 4.263068 CGGCCTGGAACTAATGGAGATTAT 60.263 45.833 0.00 0.00 0.00 1.28
2387 3733 3.071023 CGGCCTGGAACTAATGGAGATTA 59.929 47.826 0.00 0.00 0.00 1.75
2388 3734 2.158755 CGGCCTGGAACTAATGGAGATT 60.159 50.000 0.00 0.00 0.00 2.40
2389 3735 1.417890 CGGCCTGGAACTAATGGAGAT 59.582 52.381 0.00 0.00 0.00 2.75
2390 3736 0.830648 CGGCCTGGAACTAATGGAGA 59.169 55.000 0.00 0.00 0.00 3.71
2391 3737 0.541863 ACGGCCTGGAACTAATGGAG 59.458 55.000 0.00 0.00 0.00 3.86
2392 3738 0.539986 GACGGCCTGGAACTAATGGA 59.460 55.000 0.00 0.00 0.00 3.41
2393 3739 0.810031 CGACGGCCTGGAACTAATGG 60.810 60.000 0.00 0.00 0.00 3.16
2394 3740 0.810031 CCGACGGCCTGGAACTAATG 60.810 60.000 0.00 0.00 0.00 1.90
2395 3741 0.974010 TCCGACGGCCTGGAACTAAT 60.974 55.000 9.66 0.00 0.00 1.73
2396 3742 1.186917 TTCCGACGGCCTGGAACTAA 61.187 55.000 9.66 0.00 39.29 2.24
2397 3743 0.974010 ATTCCGACGGCCTGGAACTA 60.974 55.000 19.51 2.72 46.41 2.24
2398 3744 1.838073 AATTCCGACGGCCTGGAACT 61.838 55.000 19.51 9.28 46.41 3.01
2399 3745 0.108041 TAATTCCGACGGCCTGGAAC 60.108 55.000 19.51 0.00 46.41 3.62
2401 3747 0.108041 GTTAATTCCGACGGCCTGGA 60.108 55.000 9.66 2.07 0.00 3.86
2402 3748 1.426041 CGTTAATTCCGACGGCCTGG 61.426 60.000 9.66 0.00 35.74 4.45
2403 3749 0.458889 TCGTTAATTCCGACGGCCTG 60.459 55.000 9.66 0.00 39.59 4.85
2404 3750 0.459063 GTCGTTAATTCCGACGGCCT 60.459 55.000 9.66 0.00 44.29 5.19
2405 3751 2.001357 GTCGTTAATTCCGACGGCC 58.999 57.895 9.66 0.00 44.29 6.13
2410 3756 4.460948 AAAGGCTAGTCGTTAATTCCGA 57.539 40.909 0.00 0.00 0.00 4.55
2411 3757 6.029209 GTAAAAGGCTAGTCGTTAATTCCG 57.971 41.667 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.