>input_sequence_80416
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---------------------------------ATGGCTACCTCCACCGCCGCCGCCATCCCCTGTCTCCTCCTCCTCGC
CACGCTCACCATCGCCGCTGCTGAAATAGGGCACCCGCAGGCTCCGGCGGCAGCCGCAGGCGCTGTGGGCGGCCGGACGG
AGATCAGGGACGTGGGCAAGAACAAGCTGGTGCAGTCCCTGGGCCGGTTCGCGGTGGCCGAGCACAACCGCCGCCTCAGC
CACGGCGGCGGACCAGCCAACAACGGCGACCCCGTCCGGGTCCAGCTTGTGTTCACCGCCGTGGCGGCGGCGCAGAAGCA
GGTCGCCTCCGGGGTGGTTTACTACCTGAAGGTTATCGCCCGGGACCGCGCCGGCGGCGGCGGGGACAGGCCGTTCGACG
CCGTGGTGGTCGTCAAGGCGTGGATCAAGTCCAAGGAGCTCGTGTCTCTCATGCCTTCTCCCAAATAA------------
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>chr2B_1_TraesCS2B01G293600
ATATGCGGCTATATATGCTCTTAGCCCCTCCAAATAAAGCCATGTCGCCCCACTCAACATCCTTTTT-TGCTGCATGAAG
AAATGGACGTGTGCTACGCGTCGGCCGGATGATGATATGAAC----TGACCGTCTGGCCGACTGTTGGATGGATCCAATA
ATAATCATTCAATCAACTGCCACGTGAGTGTCACTTTATGTAACAAGGTTAGTGTA-CGCACATCCCACATCAACATGAC
TCTTGCTACAAAACATCCCGAACTATATTTCCACCCCGTTACAAACCATT----GCAATAGCACAAATGCTTCCAAAACA
TAGCTTTAGTTGCAAAACCAATGCAACAACATGCA---TTCAGAAAACCATAGCCCTCATTTGCGGCCATGTTTTCAAAC
TAGGCTATGGTGTAGGCTGCTGTGGGTCGCTCGATCAAAGACGATCGTATGCTGGTGGAGGCGGTCGACACCCACGAAGA
GATCAGTTAGATGAACACAAGCGTCTCCGATTTCCTTTATCACATGAATATCTTCCCAATAATTTTACATGAACAACTTT
TTCACGCCCTTGTTGTAGAAACTATACTTCGCAATAACATGTTCTTTCTTCGAAGAACAATAGCATGTATTTGTAAGGAC
CCGAAGATTCAGCTAATGTCAA------------------------ATTTTTCATGGTAAATTATGTTAGCCGAGGAAAA
CAAGTTTAGTTGGTGAGCATGACAGATTCGACTCAGTGCAATTTTCTT-----------CCGTGCTCGCCAACTAAATTT
GTCATCCTCACGCCAATATAAATTGCCATGAAAAACGTTTGATTTGTCGTGCATAATTAAAAAAAATTAACACCAGATCT
TTAGCA--------------------------------------------------------------------------
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---------------------------------------------------------------------TTTCCATTTGT
AATCGTTGATAA------------------------------------------CCTACTTAATGGTACTAACCGTTATA
TCACACACGAAATTAACGGCTTAAAATGTGGACGCGTCTTAAGATTTATCTATATATAACGGGGTACCAAGTGTTCAACG
TACTGTCCCTCCCCAACACACAGAACTACAAAAATGGCTACCTCCACCGCCGCCGCCATCCCCTGTCTCCTCCTCCTCGC
CACGCTCACCATCGCCGCTGCTGAAATAGGGCACCCGCAGGCTCCGGCGGCAGCCGCAGGCGCTGTGGGCGGCCGGACGG
AGATCAGGGACGTGGGCAAGAACAAGCTGGTGCAGTCCCTGGGCCGGTTCGCGGTGGCCGAGCACAACCGCCGCCTCAGC
CACGGCGGCGGACCAGCCAACAACGGCGACCCCGTCCGGGTCCAGCTTGTGTTCACCGCCGTGGCGGCGGCGCAGAAGCA
GGTCGCCTCCGGGGTGGTTTACTACCTGAAGGTTATCGCCCGGGACCGCGCCGGCGGCGGCGGGGACAGGCCGTTCGACG
CCGTGGTGGTCGTCAAGGCGTGGATCAAGTCCAAGGAGCTCGTGTCTCTCATGCCTTCTCCCAAATAATCGACAGGCTGG
CTGTCAGGTGTACGTATGTGCGCTCCGTGCTGGTGTTGTGCTGTCCTTGTTACTCG-TTGCATTTTTCTCGTCACTTGAG
TATGTACTAGTGCAACTA--AAATAAAAAGCGTGGTTACAGCATGAACTAGTATTTGTCATCCATACTTATGCCAGGATT
ATCGATTGCGTACGCATGTGTGATGTCTTTCTAATGGAGAAATTTCTGGAAAGCGTGGGCGATCTAGTTCAATTTCTAGT
TAATTGCCAGGGCGTCTTTTGGATCCTCATGCATAAGGTGGCATCCTCGTGTCTTCACATGTATTCTTTTTTCAGGTAAT
TGCTCGTGCGTAACAACGGGTACAAATATTCTA-----------------------------------------------
----------------------------------------------------------GTATTTTAACCCGTGATTTACC
GGTGCATATTAATGTGAATGTATAAATAAATGTTTACTTAATCCTGTTT-------------------------------
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-----------GTGATTAGCCTGTCTATATTTTAGGATTTGATTTTGTAATCAGCTATCTGCTTACCAAAGAAAACATAA
A--TTTATCCGGTAAGTCGGTGAAACAGTTAAGCTGAGTTTTAAGGAATGATGCTTAGTAAAAGAATTTAAGGTTAGCCA
AAGCACTCCACCTGACAGGAAAAGAAACACTATTTTTTTTGAAGTAGTAGAGATTCTTCTCCTCTCCCTCTCTCTTTCCG
GTTTGTTAGAAATAAGGAATCCATACCTACTTTTTTTGACAACTAAAACTCCCTCTTTATTCATTGGTGATAACACCTAC
ATCTTTAAGTAAAGGAGGAAGAAGCTCATTAGGAGCAATTTCAATCCACTCACTTCAGAATTTAGATCTAGCTACACTAG
CTAATTCATGAGCAACAACGTTTGCTTCTCTAGGACAAAATTCAAACCGAATTGAACTAAACTCACATGCCAAGTGGTAA
CAACCATCAATGATGGCTGCCGCATTGCCCGCATACTGACCGTCCTTATTCATAATCTCCATTAGTTCCAGGCCGTCGGA
ATTAACGACTAGCCTTTTAC
>chr2D_1
ATATGCGATTGTAGATGCTCTTAGCCCCTTCAATTAAAGCCACGTCGCCCCACTCAACACCCTTTTTCTGCTGCATGAAG
CAAA------GTGCTACACGTCGCCCGCGTGATGATATGAAAAGATTGACCGTCTAGCAGATCGTTGGATGGATCCCATA
ATAATAGT-----------CCATGCGAGTGCCAGTCCATGTAACAAAGTTAGTGTTGCGCTCATCCTACTGTAACAAGAG
TCTTGCTACAAAACACCCTGAATTGTTTTTTCACCCCGTTATAAACCATT----GCAACAACACAAATATTTCCAAAACA
TAGCTCCAGTTGCAAAATCAATGCAACAACATGCATGTTTCAGAAAACCATAGCCCTCATTTGCGGCCATGTTTCAAAAC
TAGGCTATGGTTTAGGCTGCCGTGGGTCGTCCAATCAACGACGATCGTACGGTAGTGGAGGCAGTCGACACCCGCGAAGA
GATCAGCCAGGTGAACACAAGCGTCTCCGTTTTCTTTTATCACCTGAACATCTCCCAAATAATTTTACATGAACAAAGTT
TTCACGCCCTTGTTGTAGAAACTATACTCCGCAATAACATGGTCTTTTTTCGAAGAACAATAGCATGTATGTGTAAGGAC
CCAAATATTCATCCAGCGTAAGATTTTTAGACATAGAAAATCAAATATTTTTCAGGGTAAATTA--TTAGCCGAGGATAA
CAAGTTTAGTTGGCGAGCATGATAGATCCGACTCAGCTCATTTTTCTTCTAGAAAATTGCCGTGCTCGTCAACTAAATTT
ATCATCCTCACGCCAATATAAATTACCATGAAAAACATTTGATTTGTTTGCGCATAAAAC----AATTAACATCAGATAT
TTAGCA--------------------------------------------------------------------------
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---------------------------------------------------------------------GTTCCATTTGT
AATCGTTGACAACCTCTTGCCTACTTTCACCCGCAAAAAAAAAAAAACCTCTTGCCTACTTAATGGTACTAACCGTTATA
TCACACACGAAATTAACGGCTTAAAATGTGGACGCGTCTTAAAATTTATCTATATAATATGG---------------ACG
TACTGTCCCTCCCCAACACACAGAACTACAAAAATGGCTACCTCCACCACGGCCGCCATCTCCTGTCTCCTCCTCCTCGC
CACGCTCACCATTGCCGCTGCTGAAATAAGGCACCCGCAGGCTCCGGCGGTAGCCGGAGGCGCCGTGGGCGGCCGGACGG
AGATCAGGGACGTGGGCAAGAACAAGCTGGTGCAGTCCCTGGGCCGGTTCGCGGTGTCCGAACACAACCGCCGCCTCAGC
CACGGCGGCGGACCAGTCAACAACGGCGACCCCGTCAAGGTCCAGCTCGTGTTCACCGCCGTGGCGGCGGCGCAAAAGCA
GGTCGCCTCCGGGGTGGTATACTACCTGAAGGTTATCGCCCGGGACCGCGCCGGCGGCGGCGGGGACAGGCCGTTCGACG
CCGTGGTGGTCGTCAAGGCGTGGATCAAGTCCAAGGAGCTCGTGTCTCTCATGCCTTCTCCCAAGTAATCGACAGGCTGG
CTGTCACGTGTACGTATGTGCGCTCCGTGCTGGTTTTGTGCTGTTGTTGTTACTCGCTGTATTTTTCTCCGTCACCTGAG
TACGTACTAGTGCAACTACAAAATAAAGAGCGTGGTT-------------------------------------------
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>chr2A_175
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-------------------CCATGTGAGCGCCAGTCCATGTAACAAGGCTAGTGTTGTGTTCATCCTACTGTAACAGGAG
TCTTGCTACAAAACACCCTGAATTGTTTTTCCATCCCGTTACAAACCATTAATTGCAACAACACAAATATTTCTAAAACA
TAGCTTCAGTTGCAAAATCAATGCAACAACATGCATGTTTCAGAAAACCATAGCCCTCATTTGCGGCCATGTTTCAAAAT
TAGGCTATGATTTAAGCTGCTGTGGGTGGTCCGATCAAAGACGATCGTACAGTAGTGGAGGCGGTCGACACCCACGAAGA
GATCGGCCAGGTGAATACAAGCGTCTCCTTTTTCTTTTATCACCTGAACATCTCCCCAATAATTTCACATGAACAAAGTT
TTCACGCCCTTGTTGGCG-------------------------------------------AGCATGTATGTGTAAGGAC
CCGAATATTCAGCCAGCGTAAGATTTTTAGACATAGAAAATCAAATATTTTTCATGGTAAATTATGTTAGCTGAGGATAA
TAAGTTTAGTTGACGAGCATGACAGATCTGACTCAGTTCATTTTTCTTCTAGGAAATTGCCATGCTCGCCAACTAAATTT
TTCATCCTCACGCCAATATAAATTATCATGAAAAATATTTGATTTGTCATGCATAAAAGT------TTAACATCAGATAT
TTAGCATTTCCTGTGGTTGAATGGTTAGAGGGATTGTGGTATCCCTACCCCACCAAGATTCATGTCCCGGTGCTCGCATT
TATTCCTGCATTTATTTCAGGATTTCCGGCGATGTGCATTCAGTGGGAGGAGACGTTCCCGTCGACGACGAGGTGCCTAT
GGTGACTTCGTAAATTTCAAAATGATAAGCCGGCTCAGTATTTCGGAGGTGCTCATACGTATAGTGTGTGCGTGTGTGTT
TATAGGGGTGAGTGTATGCGCATGTATACGAGCGCTTGCGTCTGTATTGTGTTAAAAAAATCTTTAGTATTTCCATTTGT
AATCGTTGATAACCTCTTAG-----------------------------------CTACTTAATGGTACTAACCGTTATA
TCACACACGAAATTAACGGCTTAAAATGTGGACGCGTCTTAAAATTTATCTATATAATATGG---------------ACG
TACTGTCCCTTCCCAACACACATAACTACAAAAATGACTACCTCCACCACCGCCGCCATCCCCTGTCTCCTCCTCCTTGC
CACGCTCACCATCGCCGCTGCTGAAATAGGGCACCCGCAGGCTCCGGCGGCAGCCACAGGCGCCGTGGGCTGCCGGACGG
AGATCAGGGACGTGGGCAAGAACAAGCTGGTGCAGTCCCTGGGCCGGTTCGCGGTGTCCGAGCACAACCGCCGCCTCAGC
CACGGCGGCAGACCAGTCAACAACGGTGACCCCGTCCAGGTCCAGCTCGTCTTCATCGCCGTGGCGGCGGCGCAGAAGCA
GGTCGCCTCCGGGGTGGTATACTACCTGAAGGTTATCGCCCGGGACCGCGCCGGCGGCGGCGGGGACAGGCCGTTCGACG
CCGTGGTGGTCGTCAAGGCGTGGATCAAGTCCAAGGAGCTCGTGTCTCTCATGCCTTCTCCCAAGTAATCGACAGGCTGG
CTGTCAGGTGTACGTATGTGCGCTCCGTGCAGGTTTTGTGCTGTTGTTATTACTCGTTTGCATTTTTCCCGTCACTTGAG
TATGTAAC---------A--AAATAAAAAGCGTGGTTACAGCATGAACTAGTATCTGTCATCCATACTTACGCGAGGATT
ATCGGTTGCGTACGCATGTGTGATGTTTCTCTAATGGAGAAATTTCTGGAAAGCGTGGGCGATCTAGTTCAATTTCTAGT
TAATTGCCAGGGCGTCTTTTGGATTCTCATGCATAAGGTGGCATCCTCGTGT---------------TTTTTCAGGTAAT
TGCTAGTGCGTAACAACGGGTACAAATATTCTACTCCCTCCATTCCGAATTACTTGTCACAGGTATGGATGTATCTAGAT
ATATTTTAGTTCTAGATATACCCATTTCTGCGACGAGTAATTTGGAACGGAGGGAGTAGTATTTTAACTCGTGATTTACC
AGTGTATATTAATGTGAATGTATAAATAAATGTTTACTAAATCTTGTCT-------------------------------
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-----------GTGATTAAGCTGTCTATATTATAGATTTTGATTTTGTAATCAGCTA-----------------------
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>chr2D_1559
GTTCAT--------------------------------------------------------------------------
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----------------------------------------GCATGAACTAGTATTTGTCATCCATACTTATGCGAGGATT
ATCGATTGCGTACGCATGTGTGATGTTTTTCTAGTGGAGAAATTTCTGGA-AGCGTGGGCGATCTAGTTCAATTTCTAGT
TAATTGCCAGGCCGTCTTTTGGATTCTCATGCATAAGGTGGCATCCTCGTGTGTTCACATGTATTCTTTTTT-AGGTAAT
TGCTCGTGCGTAACAACGGGTACAAATATTCTA-----------------------------------------------
----------------------------------------------------------GTATTTTAACCCATGATTTACC
AGTGTATATTAATGTGAATGTATAAATAAATGTTTACTAAATCCTTGATTAACCTGTCTATATTTTAGGATTTGGTTTTG
TAATCAGCTATTTGCTTACCAAAGAAAAAACATGAGTTTATCCGGTAAGTCGGTGGAACAGTTAAGGCGAGTTATAAGGA
ACGATGCTTGGTAAAAGAATGGAATGTTAGCCGAAGCACTCCACCTCGCAGGAAAAGGAACGCTATTTTTATTCTACGGG
CCATGAGGCAGGCAAGTGGGTCGCTCAGCTGGGCGTGTCCGAAAAATATATTTGTGGTGTGAGATTTTTGCAACTGTGGA
GTCCACCCACTCCCGGCGAGGGAGTCGCGCGGCCCGCGCGCGTCGTGGCGACGCGTGGCGAGGGAGGAGGAGGAACGCGC
GTGTACCACTCCTCTTCCCAAGCTCTCAATGACAAGTGGTAGAGCAGTTCTTATAAAGGGGTCTCAGCTCTCCTCAACTA
ACAAGGTGGGACTAAACTTCCCACCATCTGCCATCTCATACATGGGCCTCAGGATTAACCAGAGATTATTATCTTATATG
GGCCTAACCCCATCCATAATCCAACAGTTCATGCATGAACTAATATTTGTCATCCATACTTATGCGAGGATTATCGATTG
CGTACGCATGTGTGATGTTTTTCTAGTGAAGAAATTTCTGGAAAGCTTGGGCGATCTAGTTCAATTTCTAGTTAATTGCC
AGGGCGTCTTTTGGATTCTCATGCATAAGGTGGCATCCTCGTATGTTCACATGTATTCTTTTTTTAGGTAATTGCTCATG
CGTAACAACGGGTACAAATATTCTAGTATTTTAACCCATGATTTACCAGTGTATATTAATGTGAATGTATAAGTAAATCT
TTACTAAATCCGTGATTAACCTGTCTATATTTTAGGATTTGGTTTTGTAATCAGCTATTTGCTTACCAAAGAAAAAACAT
GAGTTTATCCGGTAAGTCGGTGGAACAGTTAAGGCGAGTTATAAGGAACGATGCTTGGTAAAAGAATGGAAGGTTAGCCG
AAGCACTCCACCTCGCAGGAAAAGGAACGCTATTTTT-------------------------------------------
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>SNPs
-------SS-S--S---------------S---S--------S----------------S--------------------
S--SSSSSSS-------S-----S---SS------------S-------------S--S--SS-------------S---
-----SS-SSSSSSSSSSS---S-------S--S-SS------------------S----S-----S--SSS----S--S
---------------S--S---S-S-S-------------------------------S-S-------SS----------
------S----------S--------------------------------------------------------SS----
-----------S-----------------SS------------------S-S-S--------------------------
------SS--S------------------S----S--------S----S----S----------------------SS--
----------------------------S------------S-----S----------------------S---------
-----S-------S-SS--S-S-------------------------------------------------------S--
-------------S-------------S---------S--S---------------------------------------
S-----------------------S-----------S-----------S-------SS-SSSSS--------S-----S-
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------------------------------------------S-------------SS-S--SSSSSSSSSSSSSSS---
------------------------------------------------S-------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------S-----------------------
----------------S--------------------S---------S--------------------------------
------------------S-------------------------------------------------------------
----------------------------------------------------------------S---------------
----------------------------------S---------SS----------------------S-----------
-------------------------------------------------------------------------S------
--------------------------S-----------------------------------------------------
------------------------S---------------------------S---------------------------
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S---S---------------------------------S--------S--------------------------------
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------------------S---------------------------------------S----------------S-S-S
S---------------------S----------SS-----S-------S-------S----------SS----------S
-------------SS---------S---S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_510
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----------ATGAACACAAGCGTCTCCGA--------------------------------------------------
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>reverse_3745
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----------------------------------------------------------------GTTCCAGGCCGTCGGA
ATTA----------------
