Multiple sequence alignment - TraesCS2B01G287300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G287300 chr2B 100.000 2993 0 0 1 2993 396406441 396403449 0.000000e+00 5528.0
1 TraesCS2B01G287300 chr2B 97.406 347 5 3 201 544 659522475 659522820 3.320000e-164 588.0
2 TraesCS2B01G287300 chr2B 97.406 347 4 4 201 544 235161337 235161681 1.200000e-163 586.0
3 TraesCS2B01G287300 chr2B 96.866 351 5 5 197 544 264573807 264573460 1.550000e-162 582.0
4 TraesCS2B01G287300 chr2A 93.245 2413 72 36 567 2945 431080103 431077748 0.000000e+00 3469.0
5 TraesCS2B01G287300 chr2A 92.537 201 15 0 1 201 431080310 431080110 3.770000e-74 289.0
6 TraesCS2B01G287300 chr2D 92.765 2391 73 40 608 2945 326787401 326785058 0.000000e+00 3365.0
7 TraesCS2B01G287300 chr2D 89.806 206 8 3 1 201 326788013 326787816 4.950000e-63 252.0
8 TraesCS2B01G287300 chr3B 96.739 368 7 3 198 562 41519784 41520149 2.550000e-170 608.0
9 TraesCS2B01G287300 chr3B 97.118 347 7 2 201 544 755286423 755286077 1.550000e-162 582.0
10 TraesCS2B01G287300 chr3B 96.226 318 9 2 198 514 486614768 486615083 4.420000e-143 518.0
11 TraesCS2B01G287300 chr3B 91.071 56 5 0 2938 2993 703641294 703641239 3.200000e-10 76.8
12 TraesCS2B01G287300 chr3B 89.286 56 6 0 2938 2993 284907279 284907334 1.490000e-08 71.3
13 TraesCS2B01G287300 chr5B 96.721 366 7 3 201 563 641303645 641303282 3.300000e-169 604.0
14 TraesCS2B01G287300 chr7B 96.458 367 8 3 202 565 709375845 709375481 4.270000e-168 601.0
15 TraesCS2B01G287300 chr7B 93.559 295 7 4 280 564 606347155 606347447 2.130000e-116 429.0
16 TraesCS2B01G287300 chr7B 100.000 28 0 0 2940 2967 615146931 615146904 5.000000e-03 52.8
17 TraesCS2B01G287300 chr5A 96.639 357 4 3 202 557 24797189 24796840 1.200000e-163 586.0
18 TraesCS2B01G287300 chr5A 100.000 28 0 0 2940 2967 150588139 150588112 5.000000e-03 52.8
19 TraesCS2B01G287300 chr4B 96.122 361 6 3 201 560 625529370 625529017 1.550000e-162 582.0
20 TraesCS2B01G287300 chr4B 88.889 54 6 0 2940 2993 530008477 530008530 1.930000e-07 67.6
21 TraesCS2B01G287300 chr7A 92.453 53 4 0 2941 2993 722219961 722220013 3.200000e-10 76.8
22 TraesCS2B01G287300 chr3A 89.474 57 6 0 2937 2993 625323459 625323403 4.140000e-09 73.1
23 TraesCS2B01G287300 chr4D 87.037 54 7 0 2940 2993 43862904 43862957 8.960000e-06 62.1
24 TraesCS2B01G287300 chr1A 87.037 54 7 0 2940 2993 501618443 501618390 8.960000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G287300 chr2B 396403449 396406441 2992 True 5528.0 5528 100.0000 1 2993 1 chr2B.!!$R2 2992
1 TraesCS2B01G287300 chr2A 431077748 431080310 2562 True 1879.0 3469 92.8910 1 2945 2 chr2A.!!$R1 2944
2 TraesCS2B01G287300 chr2D 326785058 326788013 2955 True 1808.5 3365 91.2855 1 2945 2 chr2D.!!$R1 2944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 366 0.047176 AGAGGAGAGAGAGAGGGGGA 59.953 60.0 0.0 0.0 0.0 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2173 2606 0.392998 GTGGTAGCAGTGGTGGATGG 60.393 60.0 4.76 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.204028 GGTGCTGGGTGGTGTGGT 62.204 66.667 0.00 0.00 0.00 4.16
185 191 0.372679 CGAGTCGTAACTAGCGCTGA 59.627 55.000 22.90 4.10 35.28 4.26
201 207 1.402456 GCTGAAATTGCTGCCACTGAG 60.402 52.381 3.93 0.00 0.00 3.35
202 208 2.156917 CTGAAATTGCTGCCACTGAGA 58.843 47.619 0.00 0.00 0.00 3.27
204 210 1.471684 GAAATTGCTGCCACTGAGAGG 59.528 52.381 0.00 0.00 0.00 3.69
205 211 0.323178 AATTGCTGCCACTGAGAGGG 60.323 55.000 0.00 0.00 0.00 4.30
207 213 2.046507 GCTGCCACTGAGAGGGTG 60.047 66.667 0.00 0.00 34.78 4.61
210 216 0.109342 CTGCCACTGAGAGGGTGTTT 59.891 55.000 0.00 0.00 33.31 2.83
211 217 0.179020 TGCCACTGAGAGGGTGTTTG 60.179 55.000 0.00 0.00 33.31 2.93
212 218 0.890996 GCCACTGAGAGGGTGTTTGG 60.891 60.000 0.00 0.00 33.31 3.28
213 219 0.764890 CCACTGAGAGGGTGTTTGGA 59.235 55.000 0.00 0.00 33.31 3.53
214 220 1.352352 CCACTGAGAGGGTGTTTGGAT 59.648 52.381 0.00 0.00 33.31 3.41
215 221 2.571653 CCACTGAGAGGGTGTTTGGATA 59.428 50.000 0.00 0.00 33.31 2.59
216 222 3.600388 CACTGAGAGGGTGTTTGGATAC 58.400 50.000 0.00 0.00 0.00 2.24
217 223 3.261897 CACTGAGAGGGTGTTTGGATACT 59.738 47.826 0.00 0.00 37.61 2.12
218 224 3.515901 ACTGAGAGGGTGTTTGGATACTC 59.484 47.826 0.00 0.00 37.61 2.59
219 225 3.772025 CTGAGAGGGTGTTTGGATACTCT 59.228 47.826 0.00 0.00 37.96 3.24
220 226 3.769844 TGAGAGGGTGTTTGGATACTCTC 59.230 47.826 11.43 11.43 46.78 3.20
221 227 4.067944 AGAGGGTGTTTGGATACTCTCT 57.932 45.455 1.11 1.11 46.43 3.10
223 229 5.523438 GAGGGTGTTTGGATACTCTCTAG 57.477 47.826 0.00 0.00 40.33 2.43
224 230 4.949121 AGGGTGTTTGGATACTCTCTAGT 58.051 43.478 0.00 0.00 39.91 2.57
225 231 4.957327 AGGGTGTTTGGATACTCTCTAGTC 59.043 45.833 0.00 0.00 37.15 2.59
226 232 4.710375 GGGTGTTTGGATACTCTCTAGTCA 59.290 45.833 0.00 0.00 37.15 3.41
227 233 5.364157 GGGTGTTTGGATACTCTCTAGTCAT 59.636 44.000 0.00 0.00 37.15 3.06
228 234 6.276847 GGTGTTTGGATACTCTCTAGTCATG 58.723 44.000 0.00 0.00 37.15 3.07
229 235 6.127310 GGTGTTTGGATACTCTCTAGTCATGT 60.127 42.308 0.00 0.00 37.15 3.21
230 236 6.754209 GTGTTTGGATACTCTCTAGTCATGTG 59.246 42.308 0.00 0.00 37.15 3.21
231 237 6.663523 TGTTTGGATACTCTCTAGTCATGTGA 59.336 38.462 0.00 0.00 37.15 3.58
232 238 6.701145 TTGGATACTCTCTAGTCATGTGAC 57.299 41.667 5.01 5.01 40.95 3.67
234 240 7.138054 TGGATACTCTCTAGTCATGTGACTA 57.862 40.000 18.83 18.83 45.93 2.59
263 269 9.352191 AGTAGTCAGACTAGAAGTTTTTAGTCA 57.648 33.333 21.15 7.40 45.20 3.41
264 270 9.615295 GTAGTCAGACTAGAAGTTTTTAGTCAG 57.385 37.037 21.15 16.38 45.20 3.51
265 271 8.466617 AGTCAGACTAGAAGTTTTTAGTCAGA 57.533 34.615 21.15 17.72 45.20 3.27
266 272 8.510132 GTCAGACTAGAAGTTTTTAGTCAGAC 57.490 38.462 22.96 22.96 46.46 3.51
267 273 7.595875 GTCAGACTAGAAGTTTTTAGTCAGACC 59.404 40.741 24.69 15.82 46.58 3.85
268 274 6.869388 CAGACTAGAAGTTTTTAGTCAGACCC 59.131 42.308 21.15 4.21 45.20 4.46
269 275 6.783482 AGACTAGAAGTTTTTAGTCAGACCCT 59.217 38.462 21.15 5.95 45.20 4.34
270 276 6.760291 ACTAGAAGTTTTTAGTCAGACCCTG 58.240 40.000 0.00 0.00 0.00 4.45
271 277 5.632034 AGAAGTTTTTAGTCAGACCCTGT 57.368 39.130 0.00 0.00 32.61 4.00
272 278 6.002653 AGAAGTTTTTAGTCAGACCCTGTT 57.997 37.500 0.00 0.00 32.61 3.16
273 279 6.424032 AGAAGTTTTTAGTCAGACCCTGTTT 58.576 36.000 0.00 0.00 32.61 2.83
274 280 6.318900 AGAAGTTTTTAGTCAGACCCTGTTTG 59.681 38.462 0.00 0.00 32.61 2.93
275 281 4.887655 AGTTTTTAGTCAGACCCTGTTTGG 59.112 41.667 0.00 0.00 32.61 3.28
276 282 4.781775 TTTTAGTCAGACCCTGTTTGGA 57.218 40.909 0.00 0.00 38.35 3.53
277 283 4.781775 TTTAGTCAGACCCTGTTTGGAA 57.218 40.909 0.00 0.00 38.35 3.53
278 284 2.938956 AGTCAGACCCTGTTTGGAAG 57.061 50.000 0.00 0.00 38.35 3.46
279 285 1.421646 AGTCAGACCCTGTTTGGAAGG 59.578 52.381 0.00 0.00 38.35 3.46
280 286 1.143073 GTCAGACCCTGTTTGGAAGGT 59.857 52.381 0.00 0.00 38.35 3.50
281 287 1.142870 TCAGACCCTGTTTGGAAGGTG 59.857 52.381 0.00 0.00 38.35 4.00
282 288 1.142870 CAGACCCTGTTTGGAAGGTGA 59.857 52.381 0.00 0.00 38.35 4.02
283 289 1.143073 AGACCCTGTTTGGAAGGTGAC 59.857 52.381 0.00 0.00 38.35 3.67
285 291 2.370849 GACCCTGTTTGGAAGGTGACTA 59.629 50.000 0.00 0.00 42.68 2.59
286 292 2.105993 ACCCTGTTTGGAAGGTGACTAC 59.894 50.000 0.00 0.00 42.68 2.73
287 293 2.372172 CCCTGTTTGGAAGGTGACTACT 59.628 50.000 0.00 0.00 42.68 2.57
288 294 3.581332 CCCTGTTTGGAAGGTGACTACTA 59.419 47.826 0.00 0.00 42.68 1.82
289 295 4.562963 CCCTGTTTGGAAGGTGACTACTAC 60.563 50.000 0.00 0.00 42.68 2.73
290 296 4.283722 CCTGTTTGGAAGGTGACTACTACT 59.716 45.833 0.00 0.00 42.68 2.57
291 297 5.479375 CCTGTTTGGAAGGTGACTACTACTA 59.521 44.000 0.00 0.00 42.68 1.82
292 298 6.350277 CCTGTTTGGAAGGTGACTACTACTAG 60.350 46.154 0.00 0.00 42.68 2.57
293 299 6.073314 TGTTTGGAAGGTGACTACTACTAGT 58.927 40.000 0.00 0.00 42.68 2.57
294 300 6.208204 TGTTTGGAAGGTGACTACTACTAGTC 59.792 42.308 0.00 3.34 46.56 2.59
311 317 9.862371 ACTACTAGTCAACATTAAATGTCTCAG 57.138 33.333 0.00 0.00 44.07 3.35
312 318 9.862371 CTACTAGTCAACATTAAATGTCTCAGT 57.138 33.333 0.00 0.00 44.07 3.41
327 333 8.511604 AATGTCTCAGTATTAAATGTCCCTTG 57.488 34.615 0.00 0.00 0.00 3.61
328 334 7.016153 TGTCTCAGTATTAAATGTCCCTTGT 57.984 36.000 0.00 0.00 0.00 3.16
329 335 6.878923 TGTCTCAGTATTAAATGTCCCTTGTG 59.121 38.462 0.00 0.00 0.00 3.33
330 336 5.880332 TCTCAGTATTAAATGTCCCTTGTGC 59.120 40.000 0.00 0.00 0.00 4.57
331 337 5.565509 TCAGTATTAAATGTCCCTTGTGCA 58.434 37.500 0.00 0.00 0.00 4.57
332 338 6.007076 TCAGTATTAAATGTCCCTTGTGCAA 58.993 36.000 0.00 0.00 0.00 4.08
333 339 6.072175 TCAGTATTAAATGTCCCTTGTGCAAC 60.072 38.462 0.00 0.00 37.35 4.17
346 352 3.500448 TGTGCAACACCAATTAGAGGA 57.500 42.857 0.00 0.00 45.67 3.71
347 353 3.411446 TGTGCAACACCAATTAGAGGAG 58.589 45.455 0.00 0.00 45.67 3.69
348 354 3.072330 TGTGCAACACCAATTAGAGGAGA 59.928 43.478 0.00 0.00 45.67 3.71
349 355 3.686726 GTGCAACACCAATTAGAGGAGAG 59.313 47.826 0.00 0.00 36.32 3.20
350 356 3.582647 TGCAACACCAATTAGAGGAGAGA 59.417 43.478 0.00 0.00 0.00 3.10
351 357 4.187694 GCAACACCAATTAGAGGAGAGAG 58.812 47.826 0.00 0.00 0.00 3.20
352 358 4.081420 GCAACACCAATTAGAGGAGAGAGA 60.081 45.833 0.00 0.00 0.00 3.10
353 359 5.659463 CAACACCAATTAGAGGAGAGAGAG 58.341 45.833 0.00 0.00 0.00 3.20
354 360 5.199982 ACACCAATTAGAGGAGAGAGAGA 57.800 43.478 0.00 0.00 0.00 3.10
355 361 5.200483 ACACCAATTAGAGGAGAGAGAGAG 58.800 45.833 0.00 0.00 0.00 3.20
356 362 4.584325 CACCAATTAGAGGAGAGAGAGAGG 59.416 50.000 0.00 0.00 0.00 3.69
357 363 4.151883 CCAATTAGAGGAGAGAGAGAGGG 58.848 52.174 0.00 0.00 0.00 4.30
358 364 4.151883 CAATTAGAGGAGAGAGAGAGGGG 58.848 52.174 0.00 0.00 0.00 4.79
359 365 1.827792 TAGAGGAGAGAGAGAGGGGG 58.172 60.000 0.00 0.00 0.00 5.40
360 366 0.047176 AGAGGAGAGAGAGAGGGGGA 59.953 60.000 0.00 0.00 0.00 4.81
361 367 0.185175 GAGGAGAGAGAGAGGGGGAC 59.815 65.000 0.00 0.00 0.00 4.46
362 368 0.254107 AGGAGAGAGAGAGGGGGACT 60.254 60.000 0.00 0.00 0.00 3.85
363 369 0.634465 GGAGAGAGAGAGGGGGACTT 59.366 60.000 0.00 0.00 0.00 3.01
364 370 1.007842 GGAGAGAGAGAGGGGGACTTT 59.992 57.143 0.00 0.00 0.00 2.66
365 371 2.245287 GGAGAGAGAGAGGGGGACTTTA 59.755 54.545 0.00 0.00 0.00 1.85
366 372 3.562182 GAGAGAGAGAGGGGGACTTTAG 58.438 54.545 0.00 0.00 0.00 1.85
367 373 2.930405 AGAGAGAGAGGGGGACTTTAGT 59.070 50.000 0.00 0.00 0.00 2.24
368 374 3.053170 AGAGAGAGAGGGGGACTTTAGTC 60.053 52.174 1.18 1.18 44.04 2.59
369 375 2.655407 AGAGAGAGGGGGACTTTAGTCA 59.345 50.000 11.67 0.00 46.47 3.41
370 376 3.028130 GAGAGAGGGGGACTTTAGTCAG 58.972 54.545 11.67 0.00 46.47 3.51
371 377 2.384029 AGAGAGGGGGACTTTAGTCAGT 59.616 50.000 11.67 0.00 46.47 3.41
372 378 3.596956 AGAGAGGGGGACTTTAGTCAGTA 59.403 47.826 11.67 0.00 46.47 2.74
373 379 4.045590 AGAGAGGGGGACTTTAGTCAGTAA 59.954 45.833 11.67 0.00 46.47 2.24
374 380 4.759953 AGAGGGGGACTTTAGTCAGTAAA 58.240 43.478 11.67 0.00 46.47 2.01
375 381 5.160386 AGAGGGGGACTTTAGTCAGTAAAA 58.840 41.667 11.67 0.00 46.47 1.52
376 382 5.248705 AGAGGGGGACTTTAGTCAGTAAAAG 59.751 44.000 11.67 0.00 46.47 2.27
377 383 4.912133 AGGGGGACTTTAGTCAGTAAAAGT 59.088 41.667 11.67 0.00 45.99 2.66
383 389 5.866207 ACTTTAGTCAGTAAAAGTCAGGGG 58.134 41.667 0.00 0.00 40.96 4.79
384 390 5.368816 ACTTTAGTCAGTAAAAGTCAGGGGT 59.631 40.000 0.00 0.00 40.96 4.95
385 391 3.771577 AGTCAGTAAAAGTCAGGGGTG 57.228 47.619 0.00 0.00 0.00 4.61
386 392 3.046374 AGTCAGTAAAAGTCAGGGGTGT 58.954 45.455 0.00 0.00 0.00 4.16
387 393 3.458487 AGTCAGTAAAAGTCAGGGGTGTT 59.542 43.478 0.00 0.00 0.00 3.32
388 394 4.079958 AGTCAGTAAAAGTCAGGGGTGTTT 60.080 41.667 0.00 0.00 0.00 2.83
389 395 4.036380 GTCAGTAAAAGTCAGGGGTGTTTG 59.964 45.833 0.00 0.00 0.00 2.93
390 396 3.317993 CAGTAAAAGTCAGGGGTGTTTGG 59.682 47.826 0.00 0.00 0.00 3.28
391 397 2.838637 AAAAGTCAGGGGTGTTTGGA 57.161 45.000 0.00 0.00 0.00 3.53
392 398 2.364972 AAAGTCAGGGGTGTTTGGAG 57.635 50.000 0.00 0.00 0.00 3.86
393 399 0.478507 AAGTCAGGGGTGTTTGGAGG 59.521 55.000 0.00 0.00 0.00 4.30
394 400 0.697854 AGTCAGGGGTGTTTGGAGGT 60.698 55.000 0.00 0.00 0.00 3.85
395 401 0.185175 GTCAGGGGTGTTTGGAGGTT 59.815 55.000 0.00 0.00 0.00 3.50
396 402 0.930726 TCAGGGGTGTTTGGAGGTTT 59.069 50.000 0.00 0.00 0.00 3.27
397 403 2.136863 TCAGGGGTGTTTGGAGGTTTA 58.863 47.619 0.00 0.00 0.00 2.01
398 404 2.158579 TCAGGGGTGTTTGGAGGTTTAC 60.159 50.000 0.00 0.00 0.00 2.01
399 405 2.141067 AGGGGTGTTTGGAGGTTTACT 58.859 47.619 0.00 0.00 0.00 2.24
400 406 2.158519 AGGGGTGTTTGGAGGTTTACTG 60.159 50.000 0.00 0.00 0.00 2.74
401 407 2.158579 GGGGTGTTTGGAGGTTTACTGA 60.159 50.000 0.00 0.00 0.00 3.41
402 408 2.882761 GGGTGTTTGGAGGTTTACTGAC 59.117 50.000 0.00 0.00 0.00 3.51
403 409 3.434596 GGGTGTTTGGAGGTTTACTGACT 60.435 47.826 0.00 0.00 0.00 3.41
404 410 4.202388 GGGTGTTTGGAGGTTTACTGACTA 60.202 45.833 0.00 0.00 0.00 2.59
405 411 5.370679 GGTGTTTGGAGGTTTACTGACTAA 58.629 41.667 0.00 0.00 0.00 2.24
406 412 5.824097 GGTGTTTGGAGGTTTACTGACTAAA 59.176 40.000 0.00 0.00 0.00 1.85
407 413 6.017357 GGTGTTTGGAGGTTTACTGACTAAAG 60.017 42.308 0.00 0.00 0.00 1.85
408 414 6.017357 GTGTTTGGAGGTTTACTGACTAAAGG 60.017 42.308 0.00 0.00 0.00 3.11
409 415 5.899631 TTGGAGGTTTACTGACTAAAGGT 57.100 39.130 0.00 0.00 0.00 3.50
410 416 5.223449 TGGAGGTTTACTGACTAAAGGTG 57.777 43.478 0.00 0.00 0.00 4.00
411 417 4.903049 TGGAGGTTTACTGACTAAAGGTGA 59.097 41.667 0.00 0.00 0.00 4.02
412 418 5.221581 TGGAGGTTTACTGACTAAAGGTGAC 60.222 44.000 0.00 0.00 0.00 3.67
414 420 6.210185 GGAGGTTTACTGACTAAAGGTGACTA 59.790 42.308 0.00 0.00 42.68 2.59
415 421 6.990798 AGGTTTACTGACTAAAGGTGACTAC 58.009 40.000 0.00 0.00 42.68 2.73
416 422 6.781507 AGGTTTACTGACTAAAGGTGACTACT 59.218 38.462 0.00 0.00 42.68 2.57
417 423 7.946776 AGGTTTACTGACTAAAGGTGACTACTA 59.053 37.037 0.00 0.00 42.68 1.82
418 424 8.026026 GGTTTACTGACTAAAGGTGACTACTAC 58.974 40.741 0.00 0.00 42.68 2.73
419 425 8.791675 GTTTACTGACTAAAGGTGACTACTACT 58.208 37.037 0.00 0.00 42.68 2.57
421 427 9.664332 TTACTGACTAAAGGTGACTACTACTAG 57.336 37.037 0.00 0.00 42.68 2.57
422 428 7.688343 ACTGACTAAAGGTGACTACTACTAGT 58.312 38.462 0.00 0.00 42.68 2.57
423 429 8.820831 ACTGACTAAAGGTGACTACTACTAGTA 58.179 37.037 1.89 1.89 42.68 1.82
424 430 9.835389 CTGACTAAAGGTGACTACTACTAGTAT 57.165 37.037 2.33 0.00 42.68 2.12
425 431 9.829507 TGACTAAAGGTGACTACTACTAGTATC 57.170 37.037 2.33 0.00 42.68 2.24
431 437 8.780616 AGGTGACTACTACTAGTATCTAGTCA 57.219 38.462 27.68 27.68 37.61 3.41
432 438 8.863086 AGGTGACTACTACTAGTATCTAGTCAG 58.137 40.741 29.76 16.80 39.42 3.51
433 439 8.641541 GGTGACTACTACTAGTATCTAGTCAGT 58.358 40.741 29.76 17.62 39.42 3.41
443 449 8.968969 ACTAGTATCTAGTCAGTAAAAGTTGGG 58.031 37.037 0.00 0.00 0.00 4.12
444 450 7.184067 AGTATCTAGTCAGTAAAAGTTGGGG 57.816 40.000 0.00 0.00 0.00 4.96
445 451 4.903045 TCTAGTCAGTAAAAGTTGGGGG 57.097 45.455 0.00 0.00 0.00 5.40
446 452 4.237018 TCTAGTCAGTAAAAGTTGGGGGT 58.763 43.478 0.00 0.00 0.00 4.95
447 453 3.223674 AGTCAGTAAAAGTTGGGGGTG 57.776 47.619 0.00 0.00 0.00 4.61
448 454 2.158519 AGTCAGTAAAAGTTGGGGGTGG 60.159 50.000 0.00 0.00 0.00 4.61
449 455 1.146152 TCAGTAAAAGTTGGGGGTGGG 59.854 52.381 0.00 0.00 0.00 4.61
450 456 0.485543 AGTAAAAGTTGGGGGTGGGG 59.514 55.000 0.00 0.00 0.00 4.96
451 457 0.189080 GTAAAAGTTGGGGGTGGGGT 59.811 55.000 0.00 0.00 0.00 4.95
452 458 0.188834 TAAAAGTTGGGGGTGGGGTG 59.811 55.000 0.00 0.00 0.00 4.61
453 459 1.595058 AAAAGTTGGGGGTGGGGTGA 61.595 55.000 0.00 0.00 0.00 4.02
454 460 2.306715 AAAGTTGGGGGTGGGGTGAC 62.307 60.000 0.00 0.00 0.00 3.67
455 461 3.182996 GTTGGGGGTGGGGTGACT 61.183 66.667 0.00 0.00 0.00 3.41
456 462 1.848895 GTTGGGGGTGGGGTGACTA 60.849 63.158 0.00 0.00 0.00 2.59
457 463 1.540367 TTGGGGGTGGGGTGACTAG 60.540 63.158 0.00 0.00 0.00 2.57
458 464 2.691252 GGGGGTGGGGTGACTAGG 60.691 72.222 0.00 0.00 0.00 3.02
459 465 2.691252 GGGGTGGGGTGACTAGGG 60.691 72.222 0.00 0.00 0.00 3.53
460 466 2.453054 GGGTGGGGTGACTAGGGA 59.547 66.667 0.00 0.00 0.00 4.20
461 467 1.993948 GGGTGGGGTGACTAGGGAC 60.994 68.421 0.00 0.00 0.00 4.46
462 468 1.080538 GGTGGGGTGACTAGGGACT 59.919 63.158 0.00 0.00 46.37 3.85
463 469 0.337428 GGTGGGGTGACTAGGGACTA 59.663 60.000 0.00 0.00 41.75 2.59
464 470 1.273438 GGTGGGGTGACTAGGGACTAA 60.273 57.143 0.00 0.00 42.17 2.24
465 471 2.543635 GTGGGGTGACTAGGGACTAAA 58.456 52.381 0.00 0.00 42.17 1.85
466 472 2.235650 GTGGGGTGACTAGGGACTAAAC 59.764 54.545 0.00 0.00 42.17 2.01
467 473 2.113052 TGGGGTGACTAGGGACTAAACT 59.887 50.000 0.00 0.00 42.17 2.66
468 474 3.337605 TGGGGTGACTAGGGACTAAACTA 59.662 47.826 0.00 0.00 42.17 2.24
469 475 3.959449 GGGGTGACTAGGGACTAAACTAG 59.041 52.174 0.00 0.00 42.17 2.57
486 492 8.983307 CTAAACTAGTTTTAGTCACCCACTAG 57.017 38.462 25.07 8.57 41.30 2.57
488 494 6.587206 ACTAGTTTTAGTCACCCACTAGTC 57.413 41.667 4.77 0.00 44.42 2.59
489 495 6.073314 ACTAGTTTTAGTCACCCACTAGTCA 58.927 40.000 4.77 0.00 44.42 3.41
490 496 5.470047 AGTTTTAGTCACCCACTAGTCAG 57.530 43.478 0.00 0.00 38.90 3.51
491 497 4.283722 AGTTTTAGTCACCCACTAGTCAGG 59.716 45.833 6.89 6.89 38.90 3.86
498 504 2.185004 CCCACTAGTCAGGGTGTTTG 57.815 55.000 9.70 0.00 40.34 2.93
499 505 1.271379 CCCACTAGTCAGGGTGTTTGG 60.271 57.143 9.70 0.00 40.34 3.28
500 506 1.697432 CCACTAGTCAGGGTGTTTGGA 59.303 52.381 0.00 0.00 0.00 3.53
501 507 2.289694 CCACTAGTCAGGGTGTTTGGAG 60.290 54.545 0.00 0.00 0.00 3.86
502 508 1.978580 ACTAGTCAGGGTGTTTGGAGG 59.021 52.381 0.00 0.00 0.00 4.30
503 509 1.978580 CTAGTCAGGGTGTTTGGAGGT 59.021 52.381 0.00 0.00 0.00 3.85
504 510 1.222567 AGTCAGGGTGTTTGGAGGTT 58.777 50.000 0.00 0.00 0.00 3.50
505 511 1.569072 AGTCAGGGTGTTTGGAGGTTT 59.431 47.619 0.00 0.00 0.00 3.27
506 512 2.781174 AGTCAGGGTGTTTGGAGGTTTA 59.219 45.455 0.00 0.00 0.00 2.01
507 513 2.882761 GTCAGGGTGTTTGGAGGTTTAC 59.117 50.000 0.00 0.00 0.00 2.01
508 514 2.781174 TCAGGGTGTTTGGAGGTTTACT 59.219 45.455 0.00 0.00 0.00 2.24
509 515 2.884639 CAGGGTGTTTGGAGGTTTACTG 59.115 50.000 0.00 0.00 0.00 2.74
510 516 2.781174 AGGGTGTTTGGAGGTTTACTGA 59.219 45.455 0.00 0.00 0.00 3.41
511 517 2.882761 GGGTGTTTGGAGGTTTACTGAC 59.117 50.000 0.00 0.00 0.00 3.51
512 518 3.434596 GGGTGTTTGGAGGTTTACTGACT 60.435 47.826 0.00 0.00 0.00 3.41
513 519 4.202388 GGGTGTTTGGAGGTTTACTGACTA 60.202 45.833 0.00 0.00 0.00 2.59
514 520 5.370679 GGTGTTTGGAGGTTTACTGACTAA 58.629 41.667 0.00 0.00 0.00 2.24
515 521 5.824097 GGTGTTTGGAGGTTTACTGACTAAA 59.176 40.000 0.00 0.00 0.00 1.85
516 522 6.017357 GGTGTTTGGAGGTTTACTGACTAAAG 60.017 42.308 0.00 0.00 0.00 1.85
517 523 6.017357 GTGTTTGGAGGTTTACTGACTAAAGG 60.017 42.308 0.00 0.00 0.00 3.11
518 524 5.899631 TTGGAGGTTTACTGACTAAAGGT 57.100 39.130 0.00 0.00 0.00 3.50
519 525 5.223449 TGGAGGTTTACTGACTAAAGGTG 57.777 43.478 0.00 0.00 0.00 4.00
520 526 4.903049 TGGAGGTTTACTGACTAAAGGTGA 59.097 41.667 0.00 0.00 0.00 4.02
521 527 5.221581 TGGAGGTTTACTGACTAAAGGTGAC 60.222 44.000 0.00 0.00 0.00 3.67
523 529 6.210185 GGAGGTTTACTGACTAAAGGTGACTA 59.790 42.308 0.00 0.00 42.68 2.59
524 530 6.990798 AGGTTTACTGACTAAAGGTGACTAC 58.009 40.000 0.00 0.00 42.68 2.73
525 531 6.781507 AGGTTTACTGACTAAAGGTGACTACT 59.218 38.462 0.00 0.00 42.68 2.57
526 532 7.946776 AGGTTTACTGACTAAAGGTGACTACTA 59.053 37.037 0.00 0.00 42.68 1.82
527 533 8.026026 GGTTTACTGACTAAAGGTGACTACTAC 58.974 40.741 0.00 0.00 42.68 2.73
528 534 5.876612 ACTGACTAAAGGTGACTACTACG 57.123 43.478 0.00 0.00 42.68 3.51
529 535 5.312079 ACTGACTAAAGGTGACTACTACGT 58.688 41.667 0.00 0.00 42.68 3.57
530 536 5.411053 ACTGACTAAAGGTGACTACTACGTC 59.589 44.000 0.00 0.00 42.68 4.34
531 537 5.555017 TGACTAAAGGTGACTACTACGTCT 58.445 41.667 0.00 0.00 42.68 4.18
532 538 5.641209 TGACTAAAGGTGACTACTACGTCTC 59.359 44.000 0.00 0.00 42.68 3.36
533 539 5.803552 ACTAAAGGTGACTACTACGTCTCT 58.196 41.667 0.00 0.00 42.68 3.10
534 540 6.940739 ACTAAAGGTGACTACTACGTCTCTA 58.059 40.000 0.00 0.00 42.68 2.43
535 541 7.041107 ACTAAAGGTGACTACTACGTCTCTAG 58.959 42.308 0.00 0.00 42.68 2.43
536 542 5.419239 AAGGTGACTACTACGTCTCTAGT 57.581 43.478 0.00 0.00 42.68 2.57
537 543 5.009854 AGGTGACTACTACGTCTCTAGTC 57.990 47.826 15.44 15.44 40.61 2.59
538 544 4.711355 AGGTGACTACTACGTCTCTAGTCT 59.289 45.833 19.84 5.69 40.61 3.24
539 545 5.043248 GGTGACTACTACGTCTCTAGTCTC 58.957 50.000 19.84 17.26 38.06 3.36
540 546 5.163519 GGTGACTACTACGTCTCTAGTCTCT 60.164 48.000 19.84 0.00 38.06 3.10
541 547 6.039270 GGTGACTACTACGTCTCTAGTCTCTA 59.961 46.154 19.84 5.69 38.06 2.43
542 548 7.134815 GTGACTACTACGTCTCTAGTCTCTAG 58.865 46.154 19.84 5.80 38.06 2.43
543 549 6.828273 TGACTACTACGTCTCTAGTCTCTAGT 59.172 42.308 19.84 8.24 38.06 2.57
544 550 7.031226 ACTACTACGTCTCTAGTCTCTAGTG 57.969 44.000 0.00 2.53 0.00 2.74
545 551 6.828273 ACTACTACGTCTCTAGTCTCTAGTGA 59.172 42.308 0.00 4.58 0.00 3.41
546 552 6.720112 ACTACGTCTCTAGTCTCTAGTGAT 57.280 41.667 0.00 1.64 0.00 3.06
547 553 6.742109 ACTACGTCTCTAGTCTCTAGTGATC 58.258 44.000 0.00 0.00 0.00 2.92
548 554 4.952460 ACGTCTCTAGTCTCTAGTGATCC 58.048 47.826 10.35 1.45 0.00 3.36
549 555 4.406326 ACGTCTCTAGTCTCTAGTGATCCA 59.594 45.833 10.35 0.00 0.00 3.41
550 556 5.104859 ACGTCTCTAGTCTCTAGTGATCCAA 60.105 44.000 10.35 0.00 0.00 3.53
551 557 5.818336 CGTCTCTAGTCTCTAGTGATCCAAA 59.182 44.000 10.35 0.00 0.00 3.28
552 558 6.238266 CGTCTCTAGTCTCTAGTGATCCAAAC 60.238 46.154 10.35 0.00 0.00 2.93
553 559 6.600032 GTCTCTAGTCTCTAGTGATCCAAACA 59.400 42.308 10.35 0.00 0.00 2.83
554 560 6.600032 TCTCTAGTCTCTAGTGATCCAAACAC 59.400 42.308 0.00 0.00 38.38 3.32
555 561 4.810191 AGTCTCTAGTGATCCAAACACC 57.190 45.455 0.00 0.00 38.82 4.16
556 562 3.515901 AGTCTCTAGTGATCCAAACACCC 59.484 47.826 0.00 0.00 38.82 4.61
557 563 3.515901 GTCTCTAGTGATCCAAACACCCT 59.484 47.826 0.00 0.00 38.82 4.34
558 564 3.769844 TCTCTAGTGATCCAAACACCCTC 59.230 47.826 0.00 0.00 38.82 4.30
559 565 3.772025 CTCTAGTGATCCAAACACCCTCT 59.228 47.826 0.00 0.00 38.82 3.69
560 566 2.867109 AGTGATCCAAACACCCTCTG 57.133 50.000 0.00 0.00 38.82 3.35
561 567 2.338809 AGTGATCCAAACACCCTCTGA 58.661 47.619 0.00 0.00 38.82 3.27
562 568 2.304180 AGTGATCCAAACACCCTCTGAG 59.696 50.000 0.00 0.00 38.82 3.35
563 569 2.039084 GTGATCCAAACACCCTCTGAGT 59.961 50.000 3.66 0.00 32.84 3.41
564 570 2.038952 TGATCCAAACACCCTCTGAGTG 59.961 50.000 3.66 0.00 41.15 3.51
565 571 1.801242 TCCAAACACCCTCTGAGTGA 58.199 50.000 3.66 0.00 38.63 3.41
566 572 1.416401 TCCAAACACCCTCTGAGTGAC 59.584 52.381 3.66 0.00 38.63 3.67
567 573 1.417890 CCAAACACCCTCTGAGTGACT 59.582 52.381 3.66 0.00 38.63 3.41
568 574 2.158755 CCAAACACCCTCTGAGTGACTT 60.159 50.000 3.66 0.00 38.63 3.01
569 575 2.874701 CAAACACCCTCTGAGTGACTTG 59.125 50.000 3.66 3.85 38.63 3.16
570 576 1.794714 ACACCCTCTGAGTGACTTGT 58.205 50.000 3.66 0.00 38.63 3.16
600 606 0.901124 TGTGTTTGTGCTTTGCCCTT 59.099 45.000 0.00 0.00 0.00 3.95
639 1013 5.357878 CCTCCTGCAGCTTAATTAATGACAA 59.642 40.000 8.66 0.00 0.00 3.18
708 1089 4.898829 TTAATGAATGAATGGGTGAGCG 57.101 40.909 0.00 0.00 0.00 5.03
748 1129 4.964897 AGTGATGAGAGAGAGAGAGAGAGA 59.035 45.833 0.00 0.00 0.00 3.10
749 1130 5.070180 AGTGATGAGAGAGAGAGAGAGAGAG 59.930 48.000 0.00 0.00 0.00 3.20
837 1238 3.470888 CCCACTACGCCCCCTCTG 61.471 72.222 0.00 0.00 0.00 3.35
855 1256 2.501723 TCTGGCCAATCTACTCCACTTC 59.498 50.000 7.01 0.00 0.00 3.01
856 1257 2.237143 CTGGCCAATCTACTCCACTTCA 59.763 50.000 7.01 0.00 0.00 3.02
857 1258 2.027192 TGGCCAATCTACTCCACTTCAC 60.027 50.000 0.61 0.00 0.00 3.18
858 1259 2.237392 GGCCAATCTACTCCACTTCACT 59.763 50.000 0.00 0.00 0.00 3.41
859 1260 3.526534 GCCAATCTACTCCACTTCACTC 58.473 50.000 0.00 0.00 0.00 3.51
860 1261 3.680196 GCCAATCTACTCCACTTCACTCC 60.680 52.174 0.00 0.00 0.00 3.85
861 1262 3.515502 CCAATCTACTCCACTTCACTCCA 59.484 47.826 0.00 0.00 0.00 3.86
862 1263 4.499183 CAATCTACTCCACTTCACTCCAC 58.501 47.826 0.00 0.00 0.00 4.02
863 1264 3.527507 TCTACTCCACTTCACTCCACT 57.472 47.619 0.00 0.00 0.00 4.00
864 1265 3.422796 TCTACTCCACTTCACTCCACTC 58.577 50.000 0.00 0.00 0.00 3.51
886 1287 6.097554 ACTCCACTCCACTGTAAATCTATCTG 59.902 42.308 0.00 0.00 0.00 2.90
888 1289 6.045318 CCACTCCACTGTAAATCTATCTGTG 58.955 44.000 0.00 0.00 0.00 3.66
891 1292 6.437477 ACTCCACTGTAAATCTATCTGTGTGA 59.563 38.462 0.00 0.00 32.09 3.58
922 1329 4.256920 AGGAATTTGAAGTCGACATGAGG 58.743 43.478 19.50 0.00 0.00 3.86
923 1330 4.020218 AGGAATTTGAAGTCGACATGAGGA 60.020 41.667 19.50 0.00 0.00 3.71
924 1331 4.331168 GGAATTTGAAGTCGACATGAGGAG 59.669 45.833 19.50 0.00 0.00 3.69
939 1352 1.040339 AGGAGCTAGGGTGAGAAGCG 61.040 60.000 0.00 0.00 41.19 4.68
966 1379 2.506217 GGCGACGCAAGATCGACA 60.506 61.111 23.09 0.00 44.53 4.35
969 1382 2.508891 CGACGCAAGATCGACAGCC 61.509 63.158 0.00 0.00 41.25 4.85
982 1401 1.152247 ACAGCCCTCACCACTCTCA 60.152 57.895 0.00 0.00 0.00 3.27
984 1403 2.262915 GCCCTCACCACTCTCACG 59.737 66.667 0.00 0.00 0.00 4.35
1212 1640 4.023193 CAGTACCACAAACCCATTCACTTC 60.023 45.833 0.00 0.00 0.00 3.01
1265 1693 3.135279 TCTCCTTCTCTCTCCACCCTAT 58.865 50.000 0.00 0.00 0.00 2.57
1355 1783 4.446413 CGTTAACGCCCTCGCCCT 62.446 66.667 16.05 0.00 39.84 5.19
1356 1784 2.510918 GTTAACGCCCTCGCCCTC 60.511 66.667 0.00 0.00 39.84 4.30
1357 1785 4.137872 TTAACGCCCTCGCCCTCG 62.138 66.667 0.00 0.00 39.84 4.63
1589 2017 4.465446 CTCCGCCCTCCTCCTCCA 62.465 72.222 0.00 0.00 0.00 3.86
1590 2018 3.765257 CTCCGCCCTCCTCCTCCAT 62.765 68.421 0.00 0.00 0.00 3.41
1591 2019 3.237741 CCGCCCTCCTCCTCCATC 61.238 72.222 0.00 0.00 0.00 3.51
1592 2020 2.123077 CGCCCTCCTCCTCCATCT 60.123 66.667 0.00 0.00 0.00 2.90
1593 2021 2.206536 CGCCCTCCTCCTCCATCTC 61.207 68.421 0.00 0.00 0.00 2.75
1594 2022 1.841103 GCCCTCCTCCTCCATCTCC 60.841 68.421 0.00 0.00 0.00 3.71
1626 2054 4.227134 ATGCTCGCCGGATTCGCT 62.227 61.111 5.05 0.00 34.56 4.93
1790 2218 4.796495 CAACCGCTACCCCTGGGC 62.796 72.222 7.39 0.00 39.32 5.36
1998 2426 1.357258 CTGCTCACAAGTAGCCGCTG 61.357 60.000 2.16 0.00 39.30 5.18
2061 2494 9.433153 GTAAGTAGGAAATTGTTGCTAGTAAGT 57.567 33.333 0.00 0.00 39.62 2.24
2164 2597 8.559536 TGCTCTTTCTAAATTGTAACTTGTCAG 58.440 33.333 0.00 0.00 0.00 3.51
2173 2606 4.811555 TGTAACTTGTCAGTTGTCATGC 57.188 40.909 0.00 0.00 43.54 4.06
2220 2654 8.830580 TCTTCTTTGTATGCTTATTAGTCATGC 58.169 33.333 0.00 0.00 0.00 4.06
2221 2655 7.177498 TCTTTGTATGCTTATTAGTCATGCG 57.823 36.000 0.00 0.00 0.00 4.73
2222 2656 6.761242 TCTTTGTATGCTTATTAGTCATGCGT 59.239 34.615 0.00 0.00 0.00 5.24
2223 2657 5.905480 TGTATGCTTATTAGTCATGCGTG 57.095 39.130 0.00 0.00 0.00 5.34
2224 2658 3.885484 ATGCTTATTAGTCATGCGTGC 57.115 42.857 0.00 0.00 0.00 5.34
2244 2678 3.641906 TGCCCTAGTACTATTCAAGAGCC 59.358 47.826 2.33 0.00 0.00 4.70
2249 2683 4.965200 AGTACTATTCAAGAGCCCATCC 57.035 45.455 0.00 0.00 0.00 3.51
2278 2712 6.471233 TCTCTAATGGACAGAGTAACATGG 57.529 41.667 0.00 0.00 40.41 3.66
2347 2788 6.036577 TGAGGCATGATATATTAGTTCGCA 57.963 37.500 0.00 0.00 0.00 5.10
2356 2797 8.710835 TGATATATTAGTTCGCAGTTTGTTCA 57.289 30.769 0.00 0.00 0.00 3.18
2514 2958 1.133668 GCTCCCCCTCAATAATGCACT 60.134 52.381 0.00 0.00 0.00 4.40
2523 2967 4.860907 CCTCAATAATGCACTTGTGCTTTC 59.139 41.667 23.57 0.72 34.64 2.62
2651 3095 1.529244 GGGTCTGTGCCAAGTTGCT 60.529 57.895 0.00 0.00 0.00 3.91
2659 3103 4.099266 TCTGTGCCAAGTTGCTTTAACAAT 59.901 37.500 0.00 0.00 41.88 2.71
2789 3233 4.878397 CCCATTGCTACTTTCAGTTAGGAG 59.122 45.833 0.00 0.00 0.00 3.69
2862 3306 4.470304 AGGTTAGTTGTATCCTGGAACCTC 59.530 45.833 0.00 0.00 40.91 3.85
2958 3403 3.969117 TTGCAATGTTGAGGATATCGC 57.031 42.857 0.00 0.00 0.00 4.58
2959 3404 3.198409 TGCAATGTTGAGGATATCGCT 57.802 42.857 0.00 0.00 0.00 4.93
2960 3405 3.544684 TGCAATGTTGAGGATATCGCTT 58.455 40.909 0.00 0.00 0.00 4.68
2961 3406 4.702831 TGCAATGTTGAGGATATCGCTTA 58.297 39.130 0.00 0.00 0.00 3.09
2962 3407 5.308014 TGCAATGTTGAGGATATCGCTTAT 58.692 37.500 0.00 0.00 0.00 1.73
2963 3408 5.409520 TGCAATGTTGAGGATATCGCTTATC 59.590 40.000 0.00 0.00 36.70 1.75
2964 3409 5.445142 GCAATGTTGAGGATATCGCTTATCG 60.445 44.000 0.00 0.00 38.08 2.92
2965 3410 4.848562 TGTTGAGGATATCGCTTATCGT 57.151 40.909 0.00 1.59 38.08 3.73
2966 3411 5.196341 TGTTGAGGATATCGCTTATCGTT 57.804 39.130 0.00 0.00 38.08 3.85
2967 3412 4.982295 TGTTGAGGATATCGCTTATCGTTG 59.018 41.667 0.00 0.00 38.08 4.10
2968 3413 4.174411 TGAGGATATCGCTTATCGTTGG 57.826 45.455 0.00 0.00 38.08 3.77
2969 3414 2.924290 GAGGATATCGCTTATCGTTGGC 59.076 50.000 0.00 0.00 38.08 4.52
2970 3415 2.299013 AGGATATCGCTTATCGTTGGCA 59.701 45.455 0.00 0.00 38.08 4.92
2971 3416 3.055819 AGGATATCGCTTATCGTTGGCAT 60.056 43.478 0.00 0.00 38.08 4.40
2972 3417 3.307242 GGATATCGCTTATCGTTGGCATC 59.693 47.826 0.00 0.00 38.08 3.91
2973 3418 2.533266 ATCGCTTATCGTTGGCATCT 57.467 45.000 0.00 0.00 39.67 2.90
2974 3419 3.660501 ATCGCTTATCGTTGGCATCTA 57.339 42.857 0.00 0.00 39.67 1.98
2975 3420 3.013276 TCGCTTATCGTTGGCATCTAG 57.987 47.619 0.00 0.00 39.67 2.43
2976 3421 2.061773 CGCTTATCGTTGGCATCTAGG 58.938 52.381 0.00 0.00 0.00 3.02
2977 3422 2.545952 CGCTTATCGTTGGCATCTAGGT 60.546 50.000 0.00 0.00 0.00 3.08
2978 3423 3.467803 GCTTATCGTTGGCATCTAGGTT 58.532 45.455 0.00 0.00 0.00 3.50
2979 3424 4.628074 GCTTATCGTTGGCATCTAGGTTA 58.372 43.478 0.00 0.00 0.00 2.85
2980 3425 4.686554 GCTTATCGTTGGCATCTAGGTTAG 59.313 45.833 0.00 0.00 0.00 2.34
2981 3426 2.596904 TCGTTGGCATCTAGGTTAGC 57.403 50.000 0.00 0.00 0.00 3.09
2982 3427 2.108168 TCGTTGGCATCTAGGTTAGCT 58.892 47.619 0.00 0.00 0.00 3.32
2983 3428 2.159099 TCGTTGGCATCTAGGTTAGCTG 60.159 50.000 0.00 0.00 0.00 4.24
2984 3429 2.565841 GTTGGCATCTAGGTTAGCTGG 58.434 52.381 0.00 0.00 0.00 4.85
2985 3430 1.131638 TGGCATCTAGGTTAGCTGGG 58.868 55.000 0.00 0.00 0.00 4.45
2986 3431 0.398318 GGCATCTAGGTTAGCTGGGG 59.602 60.000 0.00 0.00 0.00 4.96
2987 3432 1.424638 GCATCTAGGTTAGCTGGGGA 58.575 55.000 0.00 0.00 0.00 4.81
2988 3433 1.981495 GCATCTAGGTTAGCTGGGGAT 59.019 52.381 0.00 0.00 0.00 3.85
2989 3434 2.373502 GCATCTAGGTTAGCTGGGGATT 59.626 50.000 0.00 0.00 0.00 3.01
2990 3435 3.583086 GCATCTAGGTTAGCTGGGGATTA 59.417 47.826 0.00 0.00 0.00 1.75
2991 3436 4.323104 GCATCTAGGTTAGCTGGGGATTAG 60.323 50.000 0.00 0.00 0.00 1.73
2992 3437 4.827036 TCTAGGTTAGCTGGGGATTAGA 57.173 45.455 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.679638 GCTCCTCAAAAGAAAGAAAAGTGCA 60.680 40.000 0.00 0.00 0.00 4.57
124 130 2.395360 CGCATCCGGCCTTCGAAAA 61.395 57.895 0.00 0.00 42.43 2.29
125 131 2.817834 CGCATCCGGCCTTCGAAA 60.818 61.111 0.00 0.00 42.43 3.46
126 132 4.077184 ACGCATCCGGCCTTCGAA 62.077 61.111 0.00 0.00 42.43 3.71
127 133 4.812476 CACGCATCCGGCCTTCGA 62.812 66.667 0.00 0.00 42.43 3.71
128 134 2.971428 ATACACGCATCCGGCCTTCG 62.971 60.000 0.00 0.00 40.31 3.79
166 172 0.372679 TCAGCGCTAGTTACGACTCG 59.627 55.000 10.99 0.00 37.33 4.18
185 191 1.542492 CCTCTCAGTGGCAGCAATTT 58.458 50.000 0.00 0.00 0.00 1.82
201 207 4.957327 ACTAGAGAGTATCCAAACACCCTC 59.043 45.833 0.00 0.00 32.65 4.30
202 208 4.949121 ACTAGAGAGTATCCAAACACCCT 58.051 43.478 0.00 0.00 32.65 4.34
204 210 5.916661 TGACTAGAGAGTATCCAAACACC 57.083 43.478 0.00 0.00 35.45 4.16
205 211 6.754209 CACATGACTAGAGAGTATCCAAACAC 59.246 42.308 0.00 0.00 35.45 3.32
207 213 6.975772 GTCACATGACTAGAGAGTATCCAAAC 59.024 42.308 0.00 0.00 41.65 2.93
230 236 9.657419 AAACTTCTAGTCTGACTACTACTAGTC 57.343 37.037 13.34 3.34 46.56 2.59
237 243 9.352191 TGACTAAAAACTTCTAGTCTGACTACT 57.648 33.333 13.34 0.00 42.96 2.57
238 244 9.615295 CTGACTAAAAACTTCTAGTCTGACTAC 57.385 37.037 13.34 0.68 42.96 2.73
239 245 9.570468 TCTGACTAAAAACTTCTAGTCTGACTA 57.430 33.333 16.17 16.17 42.94 2.59
240 246 8.466617 TCTGACTAAAAACTTCTAGTCTGACT 57.533 34.615 15.57 15.57 42.94 3.41
242 248 7.255871 GGGTCTGACTAAAAACTTCTAGTCTGA 60.256 40.741 7.85 12.18 44.29 3.27
243 249 6.869388 GGGTCTGACTAAAAACTTCTAGTCTG 59.131 42.308 7.85 9.33 42.96 3.51
244 250 6.783482 AGGGTCTGACTAAAAACTTCTAGTCT 59.217 38.462 7.85 0.00 42.96 3.24
245 251 6.869388 CAGGGTCTGACTAAAAACTTCTAGTC 59.131 42.308 7.85 2.91 42.88 2.59
246 252 6.326843 ACAGGGTCTGACTAAAAACTTCTAGT 59.673 38.462 7.85 0.00 35.18 2.57
247 253 6.760291 ACAGGGTCTGACTAAAAACTTCTAG 58.240 40.000 7.85 0.00 35.18 2.43
248 254 6.742559 ACAGGGTCTGACTAAAAACTTCTA 57.257 37.500 7.85 0.00 35.18 2.10
249 255 5.632034 ACAGGGTCTGACTAAAAACTTCT 57.368 39.130 7.85 0.00 35.18 2.85
250 256 6.459710 CCAAACAGGGTCTGACTAAAAACTTC 60.460 42.308 7.85 0.00 35.18 3.01
251 257 5.359860 CCAAACAGGGTCTGACTAAAAACTT 59.640 40.000 7.85 0.00 35.18 2.66
252 258 4.887655 CCAAACAGGGTCTGACTAAAAACT 59.112 41.667 7.85 0.00 35.18 2.66
253 259 4.885325 TCCAAACAGGGTCTGACTAAAAAC 59.115 41.667 7.85 0.00 38.24 2.43
254 260 5.118729 TCCAAACAGGGTCTGACTAAAAA 57.881 39.130 7.85 0.00 38.24 1.94
255 261 4.781775 TCCAAACAGGGTCTGACTAAAA 57.218 40.909 7.85 0.00 38.24 1.52
256 262 4.445735 CCTTCCAAACAGGGTCTGACTAAA 60.446 45.833 7.85 0.00 38.24 1.85
257 263 3.072476 CCTTCCAAACAGGGTCTGACTAA 59.928 47.826 7.85 0.00 38.24 2.24
258 264 2.637872 CCTTCCAAACAGGGTCTGACTA 59.362 50.000 7.85 0.00 38.24 2.59
259 265 1.421646 CCTTCCAAACAGGGTCTGACT 59.578 52.381 7.85 0.00 38.24 3.41
260 266 1.143073 ACCTTCCAAACAGGGTCTGAC 59.857 52.381 0.00 0.00 38.24 3.51
261 267 1.142870 CACCTTCCAAACAGGGTCTGA 59.857 52.381 1.59 0.00 38.24 3.27
262 268 1.142870 TCACCTTCCAAACAGGGTCTG 59.857 52.381 0.00 0.00 38.24 3.51
263 269 1.143073 GTCACCTTCCAAACAGGGTCT 59.857 52.381 0.00 0.00 38.24 3.85
264 270 1.143073 AGTCACCTTCCAAACAGGGTC 59.857 52.381 0.00 0.00 38.24 4.46
265 271 1.222567 AGTCACCTTCCAAACAGGGT 58.777 50.000 0.00 0.00 38.24 4.34
266 272 2.372172 AGTAGTCACCTTCCAAACAGGG 59.628 50.000 0.00 0.00 38.24 4.45
267 273 3.771577 AGTAGTCACCTTCCAAACAGG 57.228 47.619 0.00 0.00 37.45 4.00
268 274 5.470047 AGTAGTAGTCACCTTCCAAACAG 57.530 43.478 0.00 0.00 0.00 3.16
269 275 6.073314 ACTAGTAGTAGTCACCTTCCAAACA 58.927 40.000 0.00 0.00 34.00 2.83
270 276 6.587206 ACTAGTAGTAGTCACCTTCCAAAC 57.413 41.667 0.00 0.00 34.00 2.93
285 291 9.862371 CTGAGACATTTAATGTTGACTAGTAGT 57.138 33.333 12.13 1.37 45.03 2.73
286 292 9.862371 ACTGAGACATTTAATGTTGACTAGTAG 57.138 33.333 12.13 6.95 45.03 2.57
301 307 8.960591 CAAGGGACATTTAATACTGAGACATTT 58.039 33.333 0.00 0.00 0.00 2.32
302 308 8.109634 ACAAGGGACATTTAATACTGAGACATT 58.890 33.333 0.00 0.00 0.00 2.71
303 309 7.554118 CACAAGGGACATTTAATACTGAGACAT 59.446 37.037 0.00 0.00 0.00 3.06
304 310 6.878923 CACAAGGGACATTTAATACTGAGACA 59.121 38.462 0.00 0.00 0.00 3.41
305 311 6.183360 GCACAAGGGACATTTAATACTGAGAC 60.183 42.308 0.00 0.00 0.00 3.36
306 312 5.880332 GCACAAGGGACATTTAATACTGAGA 59.120 40.000 0.00 0.00 0.00 3.27
307 313 5.647658 TGCACAAGGGACATTTAATACTGAG 59.352 40.000 0.00 0.00 0.00 3.35
308 314 5.565509 TGCACAAGGGACATTTAATACTGA 58.434 37.500 0.00 0.00 0.00 3.41
309 315 5.895636 TGCACAAGGGACATTTAATACTG 57.104 39.130 0.00 0.00 0.00 2.74
310 316 5.772672 TGTTGCACAAGGGACATTTAATACT 59.227 36.000 0.00 0.00 0.00 2.12
311 317 5.861787 GTGTTGCACAAGGGACATTTAATAC 59.138 40.000 0.00 0.00 34.08 1.89
312 318 5.047660 GGTGTTGCACAAGGGACATTTAATA 60.048 40.000 1.61 0.00 35.86 0.98
313 319 4.262420 GGTGTTGCACAAGGGACATTTAAT 60.262 41.667 1.61 0.00 35.86 1.40
314 320 3.068873 GGTGTTGCACAAGGGACATTTAA 59.931 43.478 1.61 0.00 35.86 1.52
315 321 2.625790 GGTGTTGCACAAGGGACATTTA 59.374 45.455 1.61 0.00 35.86 1.40
316 322 1.412343 GGTGTTGCACAAGGGACATTT 59.588 47.619 1.61 0.00 35.86 2.32
317 323 1.039856 GGTGTTGCACAAGGGACATT 58.960 50.000 1.61 0.00 35.86 2.71
318 324 0.106268 TGGTGTTGCACAAGGGACAT 60.106 50.000 1.61 0.00 35.86 3.06
319 325 0.323816 TTGGTGTTGCACAAGGGACA 60.324 50.000 1.61 0.00 35.86 4.02
320 326 1.039856 ATTGGTGTTGCACAAGGGAC 58.960 50.000 1.61 0.00 35.86 4.46
321 327 1.786937 AATTGGTGTTGCACAAGGGA 58.213 45.000 1.61 0.00 35.86 4.20
322 328 2.890311 TCTAATTGGTGTTGCACAAGGG 59.110 45.455 1.61 0.00 35.86 3.95
323 329 3.057315 CCTCTAATTGGTGTTGCACAAGG 60.057 47.826 1.61 0.00 35.86 3.61
324 330 3.820467 TCCTCTAATTGGTGTTGCACAAG 59.180 43.478 1.61 0.00 35.86 3.16
325 331 3.820467 CTCCTCTAATTGGTGTTGCACAA 59.180 43.478 1.61 0.00 35.86 3.33
326 332 3.072330 TCTCCTCTAATTGGTGTTGCACA 59.928 43.478 1.61 0.00 35.86 4.57
327 333 3.674997 TCTCCTCTAATTGGTGTTGCAC 58.325 45.455 0.00 0.00 0.00 4.57
328 334 3.582647 TCTCTCCTCTAATTGGTGTTGCA 59.417 43.478 0.00 0.00 0.00 4.08
329 335 4.081420 TCTCTCTCCTCTAATTGGTGTTGC 60.081 45.833 0.00 0.00 0.00 4.17
330 336 5.420421 TCTCTCTCTCCTCTAATTGGTGTTG 59.580 44.000 0.00 0.00 0.00 3.33
331 337 5.584913 TCTCTCTCTCCTCTAATTGGTGTT 58.415 41.667 0.00 0.00 0.00 3.32
332 338 5.199982 TCTCTCTCTCCTCTAATTGGTGT 57.800 43.478 0.00 0.00 0.00 4.16
333 339 4.584325 CCTCTCTCTCTCCTCTAATTGGTG 59.416 50.000 0.00 0.00 0.00 4.17
334 340 4.387437 CCCTCTCTCTCTCCTCTAATTGGT 60.387 50.000 0.00 0.00 0.00 3.67
335 341 4.151883 CCCTCTCTCTCTCCTCTAATTGG 58.848 52.174 0.00 0.00 0.00 3.16
336 342 4.151883 CCCCTCTCTCTCTCCTCTAATTG 58.848 52.174 0.00 0.00 0.00 2.32
337 343 3.142028 CCCCCTCTCTCTCTCCTCTAATT 59.858 52.174 0.00 0.00 0.00 1.40
338 344 2.721906 CCCCCTCTCTCTCTCCTCTAAT 59.278 54.545 0.00 0.00 0.00 1.73
339 345 2.140224 CCCCCTCTCTCTCTCCTCTAA 58.860 57.143 0.00 0.00 0.00 2.10
340 346 1.298693 TCCCCCTCTCTCTCTCCTCTA 59.701 57.143 0.00 0.00 0.00 2.43
341 347 0.047176 TCCCCCTCTCTCTCTCCTCT 59.953 60.000 0.00 0.00 0.00 3.69
342 348 0.185175 GTCCCCCTCTCTCTCTCCTC 59.815 65.000 0.00 0.00 0.00 3.71
343 349 0.254107 AGTCCCCCTCTCTCTCTCCT 60.254 60.000 0.00 0.00 0.00 3.69
344 350 0.634465 AAGTCCCCCTCTCTCTCTCC 59.366 60.000 0.00 0.00 0.00 3.71
345 351 2.543037 AAAGTCCCCCTCTCTCTCTC 57.457 55.000 0.00 0.00 0.00 3.20
346 352 2.930405 ACTAAAGTCCCCCTCTCTCTCT 59.070 50.000 0.00 0.00 0.00 3.10
347 353 3.293337 GACTAAAGTCCCCCTCTCTCTC 58.707 54.545 0.00 0.00 39.07 3.20
348 354 2.655407 TGACTAAAGTCCCCCTCTCTCT 59.345 50.000 7.63 0.00 44.15 3.10
349 355 3.028130 CTGACTAAAGTCCCCCTCTCTC 58.972 54.545 7.63 0.00 44.15 3.20
350 356 2.384029 ACTGACTAAAGTCCCCCTCTCT 59.616 50.000 7.63 0.00 44.15 3.10
351 357 2.822697 ACTGACTAAAGTCCCCCTCTC 58.177 52.381 7.63 0.00 44.15 3.20
352 358 4.415224 TTACTGACTAAAGTCCCCCTCT 57.585 45.455 7.63 0.00 44.15 3.69
353 359 5.012871 ACTTTTACTGACTAAAGTCCCCCTC 59.987 44.000 7.63 0.00 44.15 4.30
354 360 4.912133 ACTTTTACTGACTAAAGTCCCCCT 59.088 41.667 7.63 0.00 44.15 4.79
355 361 5.238624 ACTTTTACTGACTAAAGTCCCCC 57.761 43.478 7.63 0.00 44.15 5.40
360 366 5.368816 ACCCCTGACTTTTACTGACTAAAGT 59.631 40.000 0.00 0.00 44.78 2.66
361 367 5.701290 CACCCCTGACTTTTACTGACTAAAG 59.299 44.000 0.00 0.00 37.38 1.85
362 368 5.131475 ACACCCCTGACTTTTACTGACTAAA 59.869 40.000 0.00 0.00 0.00 1.85
363 369 4.657039 ACACCCCTGACTTTTACTGACTAA 59.343 41.667 0.00 0.00 0.00 2.24
364 370 4.228824 ACACCCCTGACTTTTACTGACTA 58.771 43.478 0.00 0.00 0.00 2.59
365 371 3.046374 ACACCCCTGACTTTTACTGACT 58.954 45.455 0.00 0.00 0.00 3.41
366 372 3.487120 ACACCCCTGACTTTTACTGAC 57.513 47.619 0.00 0.00 0.00 3.51
367 373 4.204012 CAAACACCCCTGACTTTTACTGA 58.796 43.478 0.00 0.00 0.00 3.41
368 374 3.317993 CCAAACACCCCTGACTTTTACTG 59.682 47.826 0.00 0.00 0.00 2.74
369 375 3.203487 TCCAAACACCCCTGACTTTTACT 59.797 43.478 0.00 0.00 0.00 2.24
370 376 3.558033 TCCAAACACCCCTGACTTTTAC 58.442 45.455 0.00 0.00 0.00 2.01
371 377 3.435890 CCTCCAAACACCCCTGACTTTTA 60.436 47.826 0.00 0.00 0.00 1.52
372 378 2.666317 CTCCAAACACCCCTGACTTTT 58.334 47.619 0.00 0.00 0.00 2.27
373 379 1.133482 CCTCCAAACACCCCTGACTTT 60.133 52.381 0.00 0.00 0.00 2.66
374 380 0.478507 CCTCCAAACACCCCTGACTT 59.521 55.000 0.00 0.00 0.00 3.01
375 381 0.697854 ACCTCCAAACACCCCTGACT 60.698 55.000 0.00 0.00 0.00 3.41
376 382 0.185175 AACCTCCAAACACCCCTGAC 59.815 55.000 0.00 0.00 0.00 3.51
377 383 0.930726 AAACCTCCAAACACCCCTGA 59.069 50.000 0.00 0.00 0.00 3.86
378 384 2.158519 AGTAAACCTCCAAACACCCCTG 60.159 50.000 0.00 0.00 0.00 4.45
379 385 2.141067 AGTAAACCTCCAAACACCCCT 58.859 47.619 0.00 0.00 0.00 4.79
380 386 2.158579 TCAGTAAACCTCCAAACACCCC 60.159 50.000 0.00 0.00 0.00 4.95
381 387 2.882761 GTCAGTAAACCTCCAAACACCC 59.117 50.000 0.00 0.00 0.00 4.61
382 388 3.816994 AGTCAGTAAACCTCCAAACACC 58.183 45.455 0.00 0.00 0.00 4.16
383 389 6.017357 CCTTTAGTCAGTAAACCTCCAAACAC 60.017 42.308 0.00 0.00 0.00 3.32
384 390 6.059484 CCTTTAGTCAGTAAACCTCCAAACA 58.941 40.000 0.00 0.00 0.00 2.83
385 391 6.017357 CACCTTTAGTCAGTAAACCTCCAAAC 60.017 42.308 0.00 0.00 0.00 2.93
386 392 6.059484 CACCTTTAGTCAGTAAACCTCCAAA 58.941 40.000 0.00 0.00 0.00 3.28
387 393 5.367352 TCACCTTTAGTCAGTAAACCTCCAA 59.633 40.000 0.00 0.00 0.00 3.53
388 394 4.903049 TCACCTTTAGTCAGTAAACCTCCA 59.097 41.667 0.00 0.00 0.00 3.86
389 395 5.011840 AGTCACCTTTAGTCAGTAAACCTCC 59.988 44.000 0.00 0.00 0.00 4.30
390 396 6.099159 AGTCACCTTTAGTCAGTAAACCTC 57.901 41.667 0.00 0.00 0.00 3.85
391 397 6.781507 AGTAGTCACCTTTAGTCAGTAAACCT 59.218 38.462 0.00 0.00 0.00 3.50
392 398 6.990798 AGTAGTCACCTTTAGTCAGTAAACC 58.009 40.000 0.00 0.00 0.00 3.27
393 399 8.791675 AGTAGTAGTCACCTTTAGTCAGTAAAC 58.208 37.037 0.00 0.00 0.00 2.01
394 400 8.930846 AGTAGTAGTCACCTTTAGTCAGTAAA 57.069 34.615 0.00 0.00 0.00 2.01
395 401 9.664332 CTAGTAGTAGTCACCTTTAGTCAGTAA 57.336 37.037 0.00 0.00 0.00 2.24
396 402 8.820831 ACTAGTAGTAGTCACCTTTAGTCAGTA 58.179 37.037 0.00 0.00 34.00 2.74
397 403 7.688343 ACTAGTAGTAGTCACCTTTAGTCAGT 58.312 38.462 0.00 0.00 34.00 3.41
398 404 9.835389 ATACTAGTAGTAGTCACCTTTAGTCAG 57.165 37.037 13.60 0.00 40.23 3.51
399 405 9.829507 GATACTAGTAGTAGTCACCTTTAGTCA 57.170 37.037 13.60 0.00 40.23 3.41
405 411 9.211410 TGACTAGATACTAGTAGTAGTCACCTT 57.789 37.037 31.42 13.00 38.86 3.50
406 412 8.780616 TGACTAGATACTAGTAGTAGTCACCT 57.219 38.462 31.42 11.26 38.86 4.00
407 413 8.641541 ACTGACTAGATACTAGTAGTAGTCACC 58.358 40.741 31.42 19.32 38.86 4.02
417 423 8.968969 CCCAACTTTTACTGACTAGATACTAGT 58.031 37.037 10.61 10.61 0.00 2.57
418 424 8.414778 CCCCAACTTTTACTGACTAGATACTAG 58.585 40.741 0.00 0.00 0.00 2.57
419 425 7.343833 CCCCCAACTTTTACTGACTAGATACTA 59.656 40.741 0.00 0.00 0.00 1.82
420 426 6.156429 CCCCCAACTTTTACTGACTAGATACT 59.844 42.308 0.00 0.00 0.00 2.12
421 427 6.070366 ACCCCCAACTTTTACTGACTAGATAC 60.070 42.308 0.00 0.00 0.00 2.24
422 428 6.027482 ACCCCCAACTTTTACTGACTAGATA 58.973 40.000 0.00 0.00 0.00 1.98
423 429 4.850386 ACCCCCAACTTTTACTGACTAGAT 59.150 41.667 0.00 0.00 0.00 1.98
424 430 4.041198 CACCCCCAACTTTTACTGACTAGA 59.959 45.833 0.00 0.00 0.00 2.43
425 431 4.324267 CACCCCCAACTTTTACTGACTAG 58.676 47.826 0.00 0.00 0.00 2.57
426 432 3.073356 CCACCCCCAACTTTTACTGACTA 59.927 47.826 0.00 0.00 0.00 2.59
427 433 2.158519 CCACCCCCAACTTTTACTGACT 60.159 50.000 0.00 0.00 0.00 3.41
428 434 2.235891 CCACCCCCAACTTTTACTGAC 58.764 52.381 0.00 0.00 0.00 3.51
429 435 1.146152 CCCACCCCCAACTTTTACTGA 59.854 52.381 0.00 0.00 0.00 3.41
430 436 1.627864 CCCACCCCCAACTTTTACTG 58.372 55.000 0.00 0.00 0.00 2.74
431 437 0.485543 CCCCACCCCCAACTTTTACT 59.514 55.000 0.00 0.00 0.00 2.24
432 438 0.189080 ACCCCACCCCCAACTTTTAC 59.811 55.000 0.00 0.00 0.00 2.01
433 439 0.188834 CACCCCACCCCCAACTTTTA 59.811 55.000 0.00 0.00 0.00 1.52
434 440 1.074850 CACCCCACCCCCAACTTTT 60.075 57.895 0.00 0.00 0.00 2.27
435 441 2.015726 TCACCCCACCCCCAACTTT 61.016 57.895 0.00 0.00 0.00 2.66
436 442 2.370403 TCACCCCACCCCCAACTT 60.370 61.111 0.00 0.00 0.00 2.66
437 443 2.349630 TAGTCACCCCACCCCCAACT 62.350 60.000 0.00 0.00 0.00 3.16
438 444 1.848886 CTAGTCACCCCACCCCCAAC 61.849 65.000 0.00 0.00 0.00 3.77
439 445 1.540367 CTAGTCACCCCACCCCCAA 60.540 63.158 0.00 0.00 0.00 4.12
440 446 2.124085 CTAGTCACCCCACCCCCA 59.876 66.667 0.00 0.00 0.00 4.96
441 447 2.691252 CCTAGTCACCCCACCCCC 60.691 72.222 0.00 0.00 0.00 5.40
442 448 2.691252 CCCTAGTCACCCCACCCC 60.691 72.222 0.00 0.00 0.00 4.95
443 449 1.993948 GTCCCTAGTCACCCCACCC 60.994 68.421 0.00 0.00 0.00 4.61
444 450 0.337428 TAGTCCCTAGTCACCCCACC 59.663 60.000 0.00 0.00 0.00 4.61
445 451 2.235650 GTTTAGTCCCTAGTCACCCCAC 59.764 54.545 0.00 0.00 0.00 4.61
446 452 2.113052 AGTTTAGTCCCTAGTCACCCCA 59.887 50.000 0.00 0.00 0.00 4.96
447 453 2.830293 AGTTTAGTCCCTAGTCACCCC 58.170 52.381 0.00 0.00 0.00 4.95
448 454 4.608269 ACTAGTTTAGTCCCTAGTCACCC 58.392 47.826 0.00 0.00 39.69 4.61
449 455 6.602410 AAACTAGTTTAGTCCCTAGTCACC 57.398 41.667 19.26 0.00 42.26 4.02
466 472 6.350277 CCTGACTAGTGGGTGACTAAAACTAG 60.350 46.154 0.00 6.61 43.80 2.57
467 473 5.479375 CCTGACTAGTGGGTGACTAAAACTA 59.521 44.000 0.00 0.00 36.69 2.24
468 474 4.283722 CCTGACTAGTGGGTGACTAAAACT 59.716 45.833 0.00 0.00 36.69 2.66
469 475 4.562963 CCCTGACTAGTGGGTGACTAAAAC 60.563 50.000 9.70 0.00 36.69 2.43
470 476 3.581332 CCCTGACTAGTGGGTGACTAAAA 59.419 47.826 9.70 0.00 36.69 1.52
471 477 3.170717 CCCTGACTAGTGGGTGACTAAA 58.829 50.000 9.70 0.00 36.69 1.85
472 478 2.816411 CCCTGACTAGTGGGTGACTAA 58.184 52.381 9.70 0.00 36.69 2.24
473 479 2.526888 CCCTGACTAGTGGGTGACTA 57.473 55.000 9.70 0.00 38.65 2.59
474 480 3.383162 CCCTGACTAGTGGGTGACT 57.617 57.895 9.70 0.00 38.65 3.41
480 486 1.697432 TCCAAACACCCTGACTAGTGG 59.303 52.381 0.00 0.00 38.34 4.00
481 487 2.289694 CCTCCAAACACCCTGACTAGTG 60.290 54.545 0.00 0.00 39.93 2.74
482 488 1.978580 CCTCCAAACACCCTGACTAGT 59.021 52.381 0.00 0.00 0.00 2.57
483 489 1.978580 ACCTCCAAACACCCTGACTAG 59.021 52.381 0.00 0.00 0.00 2.57
484 490 2.112279 ACCTCCAAACACCCTGACTA 57.888 50.000 0.00 0.00 0.00 2.59
485 491 1.222567 AACCTCCAAACACCCTGACT 58.777 50.000 0.00 0.00 0.00 3.41
486 492 2.067365 AAACCTCCAAACACCCTGAC 57.933 50.000 0.00 0.00 0.00 3.51
487 493 2.781174 AGTAAACCTCCAAACACCCTGA 59.219 45.455 0.00 0.00 0.00 3.86
488 494 2.884639 CAGTAAACCTCCAAACACCCTG 59.115 50.000 0.00 0.00 0.00 4.45
489 495 2.781174 TCAGTAAACCTCCAAACACCCT 59.219 45.455 0.00 0.00 0.00 4.34
490 496 2.882761 GTCAGTAAACCTCCAAACACCC 59.117 50.000 0.00 0.00 0.00 4.61
491 497 3.816994 AGTCAGTAAACCTCCAAACACC 58.183 45.455 0.00 0.00 0.00 4.16
492 498 6.017357 CCTTTAGTCAGTAAACCTCCAAACAC 60.017 42.308 0.00 0.00 0.00 3.32
493 499 6.059484 CCTTTAGTCAGTAAACCTCCAAACA 58.941 40.000 0.00 0.00 0.00 2.83
494 500 6.017357 CACCTTTAGTCAGTAAACCTCCAAAC 60.017 42.308 0.00 0.00 0.00 2.93
495 501 6.059484 CACCTTTAGTCAGTAAACCTCCAAA 58.941 40.000 0.00 0.00 0.00 3.28
496 502 5.367352 TCACCTTTAGTCAGTAAACCTCCAA 59.633 40.000 0.00 0.00 0.00 3.53
497 503 4.903049 TCACCTTTAGTCAGTAAACCTCCA 59.097 41.667 0.00 0.00 0.00 3.86
498 504 5.011840 AGTCACCTTTAGTCAGTAAACCTCC 59.988 44.000 0.00 0.00 0.00 4.30
499 505 6.099159 AGTCACCTTTAGTCAGTAAACCTC 57.901 41.667 0.00 0.00 0.00 3.85
500 506 6.781507 AGTAGTCACCTTTAGTCAGTAAACCT 59.218 38.462 0.00 0.00 0.00 3.50
501 507 6.990798 AGTAGTCACCTTTAGTCAGTAAACC 58.009 40.000 0.00 0.00 0.00 3.27
502 508 7.748241 CGTAGTAGTCACCTTTAGTCAGTAAAC 59.252 40.741 0.00 0.00 0.00 2.01
503 509 7.445402 ACGTAGTAGTCACCTTTAGTCAGTAAA 59.555 37.037 0.00 0.00 41.94 2.01
504 510 6.936900 ACGTAGTAGTCACCTTTAGTCAGTAA 59.063 38.462 0.00 0.00 41.94 2.24
505 511 6.467677 ACGTAGTAGTCACCTTTAGTCAGTA 58.532 40.000 0.00 0.00 41.94 2.74
506 512 5.312079 ACGTAGTAGTCACCTTTAGTCAGT 58.688 41.667 0.00 0.00 41.94 3.41
507 513 5.876612 ACGTAGTAGTCACCTTTAGTCAG 57.123 43.478 0.00 0.00 41.94 3.51
524 530 6.154445 GGATCACTAGAGACTAGAGACGTAG 58.846 48.000 11.94 0.00 0.00 3.51
525 531 5.597594 TGGATCACTAGAGACTAGAGACGTA 59.402 44.000 11.94 0.00 0.00 3.57
526 532 4.406326 TGGATCACTAGAGACTAGAGACGT 59.594 45.833 11.94 0.00 0.00 4.34
527 533 4.951254 TGGATCACTAGAGACTAGAGACG 58.049 47.826 11.94 0.00 0.00 4.18
528 534 6.600032 TGTTTGGATCACTAGAGACTAGAGAC 59.400 42.308 11.94 5.51 0.00 3.36
529 535 6.600032 GTGTTTGGATCACTAGAGACTAGAGA 59.400 42.308 11.94 9.84 33.59 3.10
530 536 6.183360 GGTGTTTGGATCACTAGAGACTAGAG 60.183 46.154 11.94 5.12 36.25 2.43
531 537 5.652891 GGTGTTTGGATCACTAGAGACTAGA 59.347 44.000 11.94 0.00 36.25 2.43
532 538 5.163499 GGGTGTTTGGATCACTAGAGACTAG 60.163 48.000 0.00 0.00 36.25 2.57
533 539 4.710375 GGGTGTTTGGATCACTAGAGACTA 59.290 45.833 0.00 0.00 36.25 2.59
534 540 3.515901 GGGTGTTTGGATCACTAGAGACT 59.484 47.826 0.00 0.00 36.25 3.24
535 541 3.515901 AGGGTGTTTGGATCACTAGAGAC 59.484 47.826 0.00 0.00 36.25 3.36
536 542 3.769844 GAGGGTGTTTGGATCACTAGAGA 59.230 47.826 0.00 0.00 36.25 3.10
537 543 3.772025 AGAGGGTGTTTGGATCACTAGAG 59.228 47.826 0.00 0.00 36.25 2.43
538 544 3.515502 CAGAGGGTGTTTGGATCACTAGA 59.484 47.826 0.00 0.00 36.25 2.43
539 545 3.515502 TCAGAGGGTGTTTGGATCACTAG 59.484 47.826 0.00 0.00 36.25 2.57
540 546 3.515502 CTCAGAGGGTGTTTGGATCACTA 59.484 47.826 0.00 0.00 36.25 2.74
541 547 2.304180 CTCAGAGGGTGTTTGGATCACT 59.696 50.000 0.00 0.00 36.25 3.41
542 548 2.039084 ACTCAGAGGGTGTTTGGATCAC 59.961 50.000 1.53 0.00 35.36 3.06
543 549 2.038952 CACTCAGAGGGTGTTTGGATCA 59.961 50.000 1.53 0.00 0.00 2.92
544 550 2.303022 TCACTCAGAGGGTGTTTGGATC 59.697 50.000 0.00 0.00 36.25 3.36
545 551 2.039084 GTCACTCAGAGGGTGTTTGGAT 59.961 50.000 0.00 0.00 36.25 3.41
546 552 1.416401 GTCACTCAGAGGGTGTTTGGA 59.584 52.381 0.00 0.00 36.25 3.53
547 553 1.417890 AGTCACTCAGAGGGTGTTTGG 59.582 52.381 0.00 0.00 36.25 3.28
548 554 2.874701 CAAGTCACTCAGAGGGTGTTTG 59.125 50.000 0.00 0.00 36.25 2.93
549 555 2.505819 ACAAGTCACTCAGAGGGTGTTT 59.494 45.455 0.00 0.00 36.25 2.83
550 556 2.119495 ACAAGTCACTCAGAGGGTGTT 58.881 47.619 0.00 0.00 36.25 3.32
551 557 1.794714 ACAAGTCACTCAGAGGGTGT 58.205 50.000 0.00 0.00 36.25 4.16
552 558 2.874701 CAAACAAGTCACTCAGAGGGTG 59.125 50.000 0.00 0.00 36.17 4.61
553 559 2.505819 ACAAACAAGTCACTCAGAGGGT 59.494 45.455 0.00 0.00 0.00 4.34
554 560 2.874701 CACAAACAAGTCACTCAGAGGG 59.125 50.000 1.53 0.00 0.00 4.30
555 561 3.535561 ACACAAACAAGTCACTCAGAGG 58.464 45.455 1.53 0.00 0.00 3.69
556 562 5.352569 AGAAACACAAACAAGTCACTCAGAG 59.647 40.000 0.00 0.00 0.00 3.35
557 563 5.245531 AGAAACACAAACAAGTCACTCAGA 58.754 37.500 0.00 0.00 0.00 3.27
558 564 5.551760 AGAAACACAAACAAGTCACTCAG 57.448 39.130 0.00 0.00 0.00 3.35
559 565 5.240623 ACAAGAAACACAAACAAGTCACTCA 59.759 36.000 0.00 0.00 0.00 3.41
560 566 5.569059 CACAAGAAACACAAACAAGTCACTC 59.431 40.000 0.00 0.00 0.00 3.51
561 567 5.009610 ACACAAGAAACACAAACAAGTCACT 59.990 36.000 0.00 0.00 0.00 3.41
562 568 5.219633 ACACAAGAAACACAAACAAGTCAC 58.780 37.500 0.00 0.00 0.00 3.67
563 569 5.446143 ACACAAGAAACACAAACAAGTCA 57.554 34.783 0.00 0.00 0.00 3.41
564 570 6.200097 ACAAACACAAGAAACACAAACAAGTC 59.800 34.615 0.00 0.00 0.00 3.01
565 571 6.019156 CACAAACACAAGAAACACAAACAAGT 60.019 34.615 0.00 0.00 0.00 3.16
566 572 6.354080 CACAAACACAAGAAACACAAACAAG 58.646 36.000 0.00 0.00 0.00 3.16
567 573 5.277058 GCACAAACACAAGAAACACAAACAA 60.277 36.000 0.00 0.00 0.00 2.83
568 574 4.210120 GCACAAACACAAGAAACACAAACA 59.790 37.500 0.00 0.00 0.00 2.83
569 575 4.447389 AGCACAAACACAAGAAACACAAAC 59.553 37.500 0.00 0.00 0.00 2.93
570 576 4.626042 AGCACAAACACAAGAAACACAAA 58.374 34.783 0.00 0.00 0.00 2.83
600 606 0.930726 GGAGGAGGAGAGGAGAGGAA 59.069 60.000 0.00 0.00 0.00 3.36
684 1061 4.986659 GCTCACCCATTCATTCATTAATGC 59.013 41.667 10.76 0.00 41.96 3.56
708 1089 0.674534 ACTTGTCACTCACTCGGGAC 59.325 55.000 0.00 0.00 0.00 4.46
748 1129 2.651361 CTGTCGTCCCGTTGCTCT 59.349 61.111 0.00 0.00 0.00 4.09
749 1130 2.432628 CCTGTCGTCCCGTTGCTC 60.433 66.667 0.00 0.00 0.00 4.26
821 1222 3.470888 CCAGAGGGGGCGTAGTGG 61.471 72.222 0.00 0.00 0.00 4.00
822 1223 4.162690 GCCAGAGGGGGCGTAGTG 62.163 72.222 0.00 0.00 45.40 2.74
835 1236 2.237143 TGAAGTGGAGTAGATTGGCCAG 59.763 50.000 5.11 0.00 0.00 4.85
837 1238 2.237392 AGTGAAGTGGAGTAGATTGGCC 59.763 50.000 0.00 0.00 0.00 5.36
855 1256 0.319728 CAGTGGAGTGGAGTGGAGTG 59.680 60.000 0.00 0.00 0.00 3.51
856 1257 0.105453 ACAGTGGAGTGGAGTGGAGT 60.105 55.000 0.00 0.00 0.00 3.85
857 1258 1.924731 TACAGTGGAGTGGAGTGGAG 58.075 55.000 0.00 0.00 0.00 3.86
858 1259 2.391926 TTACAGTGGAGTGGAGTGGA 57.608 50.000 0.00 0.00 0.00 4.02
859 1260 3.261897 AGATTTACAGTGGAGTGGAGTGG 59.738 47.826 0.00 0.00 0.00 4.00
860 1261 4.543590 AGATTTACAGTGGAGTGGAGTG 57.456 45.455 0.00 0.00 0.00 3.51
861 1262 6.097554 CAGATAGATTTACAGTGGAGTGGAGT 59.902 42.308 0.00 0.00 0.00 3.85
862 1263 6.097554 ACAGATAGATTTACAGTGGAGTGGAG 59.902 42.308 0.00 0.00 0.00 3.86
863 1264 5.958380 ACAGATAGATTTACAGTGGAGTGGA 59.042 40.000 0.00 0.00 0.00 4.02
864 1265 6.045318 CACAGATAGATTTACAGTGGAGTGG 58.955 44.000 0.00 0.00 0.00 4.00
886 1287 2.206576 ATTCCTTGCTTCCCTCACAC 57.793 50.000 0.00 0.00 0.00 3.82
888 1289 3.157087 TCAAATTCCTTGCTTCCCTCAC 58.843 45.455 0.00 0.00 34.76 3.51
891 1292 3.829026 GACTTCAAATTCCTTGCTTCCCT 59.171 43.478 0.00 0.00 34.76 4.20
922 1329 0.818296 TTCGCTTCTCACCCTAGCTC 59.182 55.000 0.00 0.00 32.80 4.09
923 1330 0.820871 CTTCGCTTCTCACCCTAGCT 59.179 55.000 0.00 0.00 32.80 3.32
924 1331 0.808060 GCTTCGCTTCTCACCCTAGC 60.808 60.000 0.00 0.00 0.00 3.42
939 1352 4.451652 GCGTCGCCTGCTTGCTTC 62.452 66.667 5.75 0.00 0.00 3.86
966 1379 2.279069 CGTGAGAGTGGTGAGGGCT 61.279 63.158 0.00 0.00 0.00 5.19
969 1382 3.778955 ACCGTGAGAGTGGTGAGG 58.221 61.111 0.00 0.00 37.02 3.86
982 1401 2.569218 ATCGTCCCTCCTAGCACCGT 62.569 60.000 0.00 0.00 0.00 4.83
984 1403 1.742768 CATCGTCCCTCCTAGCACC 59.257 63.158 0.00 0.00 0.00 5.01
1065 1493 1.682684 GGCGAAGGAGGAGGACTGA 60.683 63.158 0.00 0.00 0.00 3.41
1236 1664 3.951680 GGAGAGAGAAGGAGAAGTAGGTG 59.048 52.174 0.00 0.00 0.00 4.00
1265 1693 2.267642 CGGCGTGAGATTTGGGGA 59.732 61.111 0.00 0.00 0.00 4.81
1326 1754 4.397832 TTAACGGCGGGTGAGGGC 62.398 66.667 13.24 0.00 0.00 5.19
1327 1755 2.435410 GTTAACGGCGGGTGAGGG 60.435 66.667 13.24 0.00 0.00 4.30
1328 1756 2.812178 CGTTAACGGCGGGTGAGG 60.812 66.667 20.24 0.00 35.37 3.86
1354 1782 2.956964 GGCGAAGACGATGGCGAG 60.957 66.667 0.00 0.00 42.66 5.03
1500 1928 1.679305 GGCAGAGAGACGGACCTGA 60.679 63.158 0.00 0.00 0.00 3.86
1593 2021 4.809496 ATGGGCTTGCTGCGGAGG 62.809 66.667 5.93 0.00 44.05 4.30
1594 2022 3.515286 CATGGGCTTGCTGCGGAG 61.515 66.667 0.00 0.00 44.05 4.63
1626 2054 2.429930 CAGTTGGCGTGGGAGGAA 59.570 61.111 0.00 0.00 0.00 3.36
1998 2426 5.126384 ACACTTGCAGTAGAATCTAGAGGAC 59.874 44.000 0.00 0.00 0.00 3.85
2061 2494 1.255882 AATCTGCATTTTCCACCGCA 58.744 45.000 0.00 0.00 0.00 5.69
2164 2597 0.527565 GTGGTGGATGGCATGACAAC 59.472 55.000 4.70 1.47 0.00 3.32
2173 2606 0.392998 GTGGTAGCAGTGGTGGATGG 60.393 60.000 4.76 0.00 0.00 3.51
2220 2654 4.793353 GCTCTTGAATAGTACTAGGGCACG 60.793 50.000 9.20 5.05 36.80 5.34
2221 2655 4.501743 GGCTCTTGAATAGTACTAGGGCAC 60.502 50.000 14.81 2.96 38.08 5.01
2222 2656 3.641906 GGCTCTTGAATAGTACTAGGGCA 59.358 47.826 14.81 7.26 38.08 5.36
2223 2657 3.007074 GGGCTCTTGAATAGTACTAGGGC 59.993 52.174 8.85 7.31 36.27 5.19
2224 2658 4.223953 TGGGCTCTTGAATAGTACTAGGG 58.776 47.826 8.85 0.00 0.00 3.53
2244 2678 6.666980 TCTGTCCATTAGAGATGATAGGATGG 59.333 42.308 0.00 0.00 35.13 3.51
2249 2683 9.072375 TGTTACTCTGTCCATTAGAGATGATAG 57.928 37.037 8.84 0.00 43.41 2.08
2361 2802 8.903820 GGTGGAGTTGTGAAATTTTAGCTATAT 58.096 33.333 0.00 0.00 0.00 0.86
2367 2808 4.517453 TCGGGTGGAGTTGTGAAATTTTAG 59.483 41.667 0.00 0.00 0.00 1.85
2523 2967 0.029300 CAGTGGTGAAGTGCGTTTGG 59.971 55.000 0.00 0.00 0.00 3.28
2651 3095 5.499139 GCACCTAGCAGCATATTGTTAAA 57.501 39.130 0.00 0.00 44.79 1.52
2862 3306 2.101249 ACTGGTCAGCCAAAAACACATG 59.899 45.455 0.00 0.00 45.51 3.21
2939 3384 3.198409 AGCGATATCCTCAACATTGCA 57.802 42.857 0.00 0.00 32.44 4.08
2941 3386 5.635280 ACGATAAGCGATATCCTCAACATTG 59.365 40.000 0.00 0.00 44.57 2.82
2945 3390 4.386049 CCAACGATAAGCGATATCCTCAAC 59.614 45.833 0.00 0.00 44.57 3.18
2946 3391 4.556233 CCAACGATAAGCGATATCCTCAA 58.444 43.478 0.00 0.00 44.57 3.02
2947 3392 3.614150 GCCAACGATAAGCGATATCCTCA 60.614 47.826 0.00 0.00 44.57 3.86
2948 3393 2.924290 GCCAACGATAAGCGATATCCTC 59.076 50.000 0.00 0.00 44.57 3.71
2949 3394 2.299013 TGCCAACGATAAGCGATATCCT 59.701 45.455 0.00 0.00 44.57 3.24
2950 3395 2.683968 TGCCAACGATAAGCGATATCC 58.316 47.619 0.00 0.00 44.57 2.59
2951 3396 4.177026 AGATGCCAACGATAAGCGATATC 58.823 43.478 0.00 0.00 44.57 1.63
2952 3397 4.193826 AGATGCCAACGATAAGCGATAT 57.806 40.909 0.00 0.00 44.57 1.63
2953 3398 3.660501 AGATGCCAACGATAAGCGATA 57.339 42.857 0.00 0.00 44.57 2.92
2954 3399 2.533266 AGATGCCAACGATAAGCGAT 57.467 45.000 0.00 0.00 44.57 4.58
2955 3400 2.288213 CCTAGATGCCAACGATAAGCGA 60.288 50.000 0.00 0.00 44.57 4.93
2957 3402 3.113260 ACCTAGATGCCAACGATAAGC 57.887 47.619 0.00 0.00 0.00 3.09
2958 3403 4.686554 GCTAACCTAGATGCCAACGATAAG 59.313 45.833 0.00 0.00 0.00 1.73
2959 3404 4.344102 AGCTAACCTAGATGCCAACGATAA 59.656 41.667 0.00 0.00 0.00 1.75
2960 3405 3.895656 AGCTAACCTAGATGCCAACGATA 59.104 43.478 0.00 0.00 0.00 2.92
2961 3406 2.700897 AGCTAACCTAGATGCCAACGAT 59.299 45.455 0.00 0.00 0.00 3.73
2962 3407 2.108168 AGCTAACCTAGATGCCAACGA 58.892 47.619 0.00 0.00 0.00 3.85
2963 3408 2.205074 CAGCTAACCTAGATGCCAACG 58.795 52.381 0.00 0.00 35.22 4.10
2964 3409 2.565841 CCAGCTAACCTAGATGCCAAC 58.434 52.381 0.00 0.00 40.69 3.77
2965 3410 1.490490 CCCAGCTAACCTAGATGCCAA 59.510 52.381 0.00 0.00 40.69 4.52
2966 3411 1.131638 CCCAGCTAACCTAGATGCCA 58.868 55.000 0.00 0.00 40.69 4.92
2967 3412 0.398318 CCCCAGCTAACCTAGATGCC 59.602 60.000 0.00 0.00 40.69 4.40
2968 3413 1.424638 TCCCCAGCTAACCTAGATGC 58.575 55.000 0.00 0.00 40.69 3.91
2969 3414 5.087323 TCTAATCCCCAGCTAACCTAGATG 58.913 45.833 0.00 0.00 41.64 2.90
2970 3415 5.355670 TCTAATCCCCAGCTAACCTAGAT 57.644 43.478 0.00 0.00 0.00 1.98
2971 3416 4.827036 TCTAATCCCCAGCTAACCTAGA 57.173 45.455 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.