>input_sequence_63608
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----------------------------------------------------------------ATGCCGCTCCACCTGC
TGCTCCTCCTCC---TGCTCCTGCCGTCCGCCGCCGTGGCCGGCAAGGCCCGTCAGTCCTCCTCCTTCGCCCTCGATTTC
TTCCCTGGCGACGGCGCCATCGCGCAGCTCGCTCTCACCGGCGCCAATGCCACCTCCGCCGGCGACATCTCCATGCGCTC
CCCGCGCGCCCGGGTACAGTACCACAAACCCATTCACTTCGCCCCCGCCGCCGCCGGCTTCTCCACCTACTTCTCCTTCT
CTCTCCACCCTATCCCCAAATCTCACGCCGCCTCCATCGCCTTCTTCCTAACGCCCGCCGCGCCCGCGCCCTCGCCCTCA
CCCGCCGTTAACGCCCTCGCCCTCGCCATCGTCTTCGCCGCCGCGGACTCCAGCCACATCCGAGTCCAAATCGACCTCGC
CGGTGAAACGGCCGCCCAGACCGCCCCCCGCGGCATCCCCAAAAAGCTGCATTCATGGATAGACTACAACGCCACATCCG
CCACGCTTCAGGTCCGTCTCTCTGCCTCGCGCCTCCCCAAGCCGCCGCACGCGCTGCTCTCCCACCCGCTCCATCTCCAC
TCCGCCCTCCTCCTCCATCTCCTCCGCAGCAAGCCCATGCTCGCCGGATTCGCTTCCTCCCACGCCAACTGCAGCCTCTT
CAGCTGGGCCTTCAGGGCCAACCACGGGCCTCCCTACCTCATGCACTCCCAGCCACTCAATCCCACCGGCTTATCGCTCA
CCACGCCGCCGCCAGACCGCCTCCTCCGCGCTCCCCCGGGCAACCGCTACCCCTGGGCTTCGCTGCTGTTGGCGGCAGCG
TGCGGCGCCGTCTTCACATTCGTCGTGCTCTTCGTCTGGTACTCCATGGGGAAGCGCCGGCCGGTCGCGCCGGTGGAGTA
CCCCATGCACCCGTCCTCCTCCGACATCGTCTACGAGAAGATTGTGCTGGTCGGAGTCAAGGACCTCCCTGCCGATGTCA
CCGCAGCTGCTCACAAGTAG------------------------------------------------------------
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>chr2B_1_TraesCS2B01G287300
TTTGGCTCCATGGTGCTGGGTGGTGTGGTGCACTTTTCTTTCTTTTGAGGAGCT-AGGGGTGATTAAACGAGGTGGTGAC
CACCGAAAAAAG----AGTGCACGCACGCATGCGTACAGTATTTATTTTTTTTCGAAGGCCGGATGCGTGTATTTTACTC
CCGGTGGAGGTCGAGTCGTAACTAGCGCTGAAATTGCTGCCACTGAGAGGGTGTTTGGATACTCTCTAGTCATGTGACTA
GTAGTAGTCAGACTAGAAGTTTTTAGTCAGACCCTGTTTGGAAGGTGACTACTACTAGTCAACATTAAATGTCTCAGTAT
TAAATGTCCCTTGTGCAACACCAATTAGAGGAGAGAGAGAGGGGGACTTTAGTCAGTAAAAGTCAGGGGTGTTTGGAGGT
TTACTGACTAAAGGTGACTACTACTAGTATCTAGTCAGTAAAAGTTGGGGGTGGGGTGACTAGGGACTAAACTAGTTTTA
GTCACCCACTAGTCAGGGTGTTTGGAGGTTTACTGACTAAAGGTGACTACTACGTCTCTAGTCTCTAGTGATCCAAACAC
CCTCTGAGTGACTTGTTTGTGTTTCTTGTGTTTGTGCTTTGCCCTTTCCTCT----------------------------
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--------------------CCTCTCCTCCTCCTGCAGCTTAATTAATGACAAGCTGCTGCTTCTGCACT---AGTGGAA
CACGCGCCCCACACCCCTCCGCATTAATGAATG----AATGGGTGAGCGTCCCGAGTGAGTGACAAGTGATGAGAGAGAG
AGAGAGAGAG--------AGCAACGGGACGACAGGGAAAA------------AGCGAGCGAGCGAGCAAACAAAAGCGAC
CAGCTAGCTCCGGCAGCACCCCCACTACGCCCCCTCTGGCCAATCTACTCCACTTCACTCCACTCCACTCCACTGTAAAT
CTATCTGTGTGA------GGGAAGCAAGGAATTTGAAGTCGACATGAGGAGCTAGGGTGA------GAAGCGAAGCAAGC
AGGCGACGCAAGATCGACAGCCCTCA------CCACTCTCACGGTG------CTAGGAGGGACGATGCCGCTCCACCTGC
TGCTCCTCCTCC---TGCTCCTGCCGTCCGCCGCCGTGGCCGGCAAGGCCCGTCAGTCCTCCTCCTTCGCCCTCGATTTC
TTCCCTGGCGACGGCGCCATCGCGCAGCTCGCTCTCACCGGCGCCAATGCCACCTCCGCCGGCGACATCTCCATGCGCTC
CCCGCGCGCCCGGGTACAGTACCACAAACCCATTCACTTCGCCCCCGCCGCCGCCGGCTTCTCCACCTACTTCTCCTTCT
CTCTCCACCCTATCCCCAAATCTCACGCCGCCTCCATCGCCTTCTTCCTAACGCCCGCCGCGCCCGCGCCCTCGCCCTCA
CCCGCCGTTAACGCCCTCGCCCTCGCCATCGTCTTCGCCGCCGCGGACTCCAGCCACATCCGAGTCCAAATCGACCTCGC
CGGTGAAACGGCCGCCCAGACCGCCCCCCGCGGCATCCCCAAAAAGCTGCATTCATGGATAGACTACAACGCCACATCCG
CCACGCTTCAGGTCCGTCTCTCTGCCTCGCGCCTCCCCAAGCCGCCGCACGCGCTGCTCTCCCACCCGCTCCATCTCCAC
TCCGCCCTCCTCCTCCATCTCCTCCGCAGCAAGCCCATGCTCGCCGGATTCGCTTCCTCCCACGCCAACTGCAGCCTCTT
CAGCTGGGCCTTCAGGGCCAACCACGGGCCTCCCTACCTCATGCACTCCCAGCCACTCAATCCCACCGGCTTATCGCTCA
CCACGCCGCCGCCAGACCGCCTCCTCCGCGCTCCCCCGGGCAACCGCTACCCCTGGGCTTCGCTGCTGTTGGCGGCAGCG
TGCGGCGCCGTCTTCACATTCGTCGTGCTCTTCGTCTGGTACTCCATGGGGAAGCGCCGGCCGGTCGCGCCGGTGGAGTA
CCCCATGCACCCGTCCTCCTCCGACATCGTCTACGAGAAGATTGTGCTGGTCGGAGTCAAGGACCTCCCTGCCGATGTCA
CCGCAGCTGCTCACAAGTAGCCGCTG-----TCCTCTAGATTCTACTGCAAGTGTGCTCCTGTAACTGTAAGTAGGAAAT
TGTTGCTAGTAAGTGCGGTGGAAAATGCAGATTTTGCGGGCAAAGCGAACAACGCAAATTCTGCACTTCCCACCGGGATT
AGGATTCGATTGCTCTTTCTAAATTGTAACTTGTCAGTTGTCATGCCATCCACCACTGCTACCACTTCTTCTTTGTATGC
TTATTAGT-CATGCGTGCCCTAGTACTATTCAAGAGCCCATCCTATCATCTCTAATGGACAGAGTAACATGGTGTTTGTT
TTTTCGGCGAATGCACATAATATAGCTGATGACAAATTGAGGCATGATATATTAGT-T------CGCAGTTTGTTCAAAA
AATATAGCTAAAATTTCACAACTCCACCCGATTTCTGCTCAATCCCCAGATACTGAATGCATCCACCGAGTTCTTTAGTG
ACTGCTCC---TCAATTTATGCGCTTGTGCTTTGCAGAGTTGCTTGCTTTGGTGATTGCTCCCCCTCAATAATGCACTTG
TGCTTTCCAAACGCACTTCACCACTGCTGTTTAATTTACTCCTGCATTAGTAGATTCGGAGTTTCTTCTTCGGCAGCTTC
AACTTGCGGGAGACTCTTGTTGCAGTTTGGTGGCATGGGTCTGTGCCAAGTTGCTTTAACAATATGCTGCTAGGTGCAAT
TCAGTTGGCCAAAGCCACTTTGCATTAATATTGGAGATGTGCACGAGAGTGCTGAAATCATTATGGGAGATCTAGGTGCA
TGCTATATGCCCATTGCTACTTTCAGTTAGGAGCCACTAGCTGTATTATGGCATCCAGGATTCCAGGGTTTGCTTTACTT
TTAGGTTAGTTGTATCCTGGAACCTCATG-TGTTTTTGGCTGACCAGTTGCATCTTGAAAAATGTAAAGACGACAAGTTA
TTATGAAATATATGATCATTTTTTGCAATGTTGAGGATATCGCTTATCGTTGGCATCTAGGTTAGCTGGGGATTAGA
>chr2A_1
TTTGGCTCCATGGTGCTGGGTGGTATGGCACATTTTTCTCTCTTTTGAGGAGCT-AGAGGTGATTAAACGACGTGGTGAC
CACCGAAAAAAG----AGTGCACGCACGCATGCGTACAGTATTTCTTTTCGGAGGAAGGCCGGATGCGTGTATTTTACTC
CCGGTGGAGGTGGAGTCGTAACTAGCGCTGGAATTGCTGCCACTGACTGACTCTTG------------------------
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----------------TTGTGTTTCTTGTGTTTGTGCTTTGCCCTCTCCTC-----------------------------
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------------------------------TCCTGCAGCTTAATTAATGACACGCTGCTGCTTCTGCACTGCTAGTGGAA
CACGCGCCCCACACCGCTCCCCATTAATGAATGAATGAATGGGTGAGCCTCCCGAGTGAGTGACAAGTGATGAGAGAGAG
AGAGAGAGCTGAGGGGAAAGCAACGGGAGGACAGGGGAAA------------AGCTAGCGAGCGAGCGAACAAAAGCGAC
CAGCTAGCTCCGGCAGCACCC--ACTACGCCCCCTTTCGCCAATCTACTCCACTT----------CACTCCACTGTAAAT
CTATCTATCTGGGCCT-GGGGAAGCAAGGAATTTGAAGTCGACATGAG---CTAGGGTGA------GAAGCCAAGCAAGC
AGGCGACGCAAGATCGACGGCTCTCA------CCACTCTCCCCGTGCCAGGACTAGGAGGGACGATGCCGCTCCACCTGC
TGCTCCTCCTCC---TGCTCCTGCCGTCCGCCGCCGTGGCCGGCAAGGCCCGCCAGTCCTCCTCCTTCGCCCTCGATTTC
TTCCCTGGCGACGGCGCCATCGCGCAGCTCGCTCTCACCGGCGCCAACGCCACCTCCGCCGGCGACATCTCCATGCGCTC
CCCGCGCGCCCGGGTACAGTACCACAAACCCATCCACTTGGCCCCCGTCGCCACCGGCTTCTCAACCTACTTCTCCTTCT
CTCTCCACCCTAGCCCCAAATCTCACGCCGCCTCCATCGCCTTCTTCCTAACGCCCGCCGCGCC------------CTCG
CCCGCCGTTAACGCCCTCGCCG------TCGTCTTCGCCGCCGCGGACTCCAGCCACATCCGAGTCCAAATCGACCTCGC
CGGTGAAACGGCCGCCCAGACCGCCCCCCGCGGCATCCCCAAAAAGCTGCATTCATGGATAGACTACAACGCCACATCCG
CCACGCTCCAGGTCCGTCTCTCTGCCTCGCGCCTCCCCAAGCCGCCGCGCGCGCTGCTCTCCCACCCGCTCCATCTCCAC
TCCGCCCTCCTCCTCCGCA------GCACCAAGCCCATGCTCGCCGGATTCGCATCCTCCCACGCCAACTGCAGCCTCTT
CAGCTGGGCCTTCAGGGCCAACCACGGGCCTCCCTACCTCATGCACTCCCAGCCACTCAATCCCACCGGCTTATCGCTCA
CCACGCCGCTGCCACACCGCCTCCCCCGCGCTCCCCCGGGCAACCGCTACCCCTGGGTTTCGCTGCTGTTGGCGGCCGCG
TGCGGCGCCGTCTTCACATTCGTCGTGCTCTTCGTCTGGTACTCCATGGGGAAGCGCCGCCCGGTCGCGCCGGTGGAGTA
CCCCATGCACCCGTCCTCCTCCGACATCGTCTACGAGAAGATTGTGCTGGTCGGAGTCAAGGACCTCCCTGCCGATGTCA
CCGCAGCTGCTCACAAGTAGCCGCTATCCTCTCCTCTAGATTCTACTGCAAGTGTGCTCCTGTAACTGTAAGTAGGAAAT
TGTTGCTAGCAAGCGCGGTGGAAAATGCAGATTTTGCCGGCAAAGCGAACAACGCAAATTCTGCACTTCCCACCGGGATT
AGGATTCGATTGCTCTTTCTAAATTGTAACTTGTCAATTGTCATGTTATCCACCACTGCTACCAATTCTTCTTTGTATGC
TTATTAGTCCATGT----CCTAGTACTATTCAAGAGCTC-TCTTATCATCTCTAATGGACAGAGTAACATGATGTTTGTT
TTTTCGGCGAATGCAAATAATATAGCTGATGACAAATTGAGGCATGATATATTAGTAT------CGCGGTTTGTTCCAAA
A-TATAGGTAAAATTTCACAACTCCACCCGATTTCTGCTCAATCCCCAGATACTGAATGCATCCACCGGGTTCTTTAGTG
ACTGCTCCTCCTCAATTTATGCGCTTGTGCTTTGCAGAGTTGCTTGCTTTGGTGATTGCTCCCCCTCAATAATGCACCTG
TGCTTTTCAAACGCACTTCACCGCTGCTGTTTAATTTACTCCTGCATTAGTAGATTCGCAGTTTCTTCTTCGGCAGCTTC
AACTTGCGGGAGACTCTTGTTGCAGTTTGGTGTCATGGGTCTGTGCCAAGTTGC-TTAACAAGATGCTGCTAGGTGCAAT
TCAGTTAGCCAAAGCCACTTTGCATTAATATTGTAGATGTGCACGAGAGTGCTGAAATCATTATGGGAGATCTAGGAGCA
TGCTATATGCCCATTGCTACTTTCAGTTAGGAACCACTAGCTGTATTATGGCATCCAGGATTCCAGGGTTTGCTTTACTT
TTAGGTTAGTTGTATCCTGGAACCTGATGCTATTTTTGGCTGACCAGTTGCATCTTGAAAAATGTAAAGACGGCAAGTTA
TTAT--AATATACGATCATTTTTAGTAAT------------------------------------------------
>chr2D_1
TTTGGCTCCATGGTGCTGGGTGGTGTGGCGCACTTTTCTTTCTTTTGAGGAGCTAAGGGGTGATTAAACGAGGTGGTGAC
CACCGAAAAAAGGAGTAGTGCACCCACGCACGCGAACAGTATTTG--------GGAAGGCCGGATGCGTGTATTTTACTC
CCGGTGGAGGTGGAGTCGTAACTAGCGCTGGAATTGCTGCCACTGACTGACTCTTG------------------------
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----------------TTGTGTTTCTTGCGTCTGTGATTGGACAAATTTGATTTATAGACGAAATCAAATCACAGAATGA
ACTATCCGTATTTCACGCGGCTGACCTTTTTGTGTGACGCCCGACACGAAGGCGCCACACTACACTGTGCAACGCCTCAC
AGATATGCGCTACACTGCCAGCGTCGCATCCGTGTGATCAGAAAATTACTAAGTCAGTGTGCAGCGCCTAAAAGCTAGGC
GCCACACTATACAGTGTAGCGCCTAGCTCCCAGGCGTTGCACTAGTGCAGCGCCTAGCTCTCAGGTGCTGCACTAGTGCA
GGTGCAGCGCCTGAGAGCTAGGCGCCACGGGGCAGCCGTGTGAAATAGTTTCACGGACAGTTCATTCTGTGATTTGATTT
CGTCTATAGGGCTTGAGAGCCCTCTCCTCC-CCTGCAGCTTAATTAATGACACGCTGCTGCTTCTGCACT---AGTGGAA
CACGCGCCCCACACCCCTCCCCATTAATGAATGAATGAATGGGTGAGCCTCCCGAGTGAT---------------GAGAG
AGAGAGAGCTGAGGGGAAAGCAACGGGACGACAGGGAAAAAGCTAGCGAGCGAGCGAGCGAGCGAGCAAACAAAAGCGAC
CAGCTAGCTCCGGCAGCACCC--ACTACGCCCCCTTTCGCCAATCTACTCCACTT----------CACTCCACTGTAAAT
CTATCTATCTGGGCCTGGGGGAAGCAAGGAATTTGAAGTCGACATGAG---CTAGGGTGAGAGTGAGAAGCCAAGCAAGC
AGGCGACGCAAGATCGACGGCTCTCACCATCACCACTCTCCCCGTGCTAGGACTAGGAGGGAGGATGCCGCTCCACCTGC
TGCTCCTCCTCCTGCTGCTCCTGCCGTCCGCCGCCGTGGCCGGCAAGGCCCACCAGTCCTCCTCCTTCGCCCTCGATTTC
TTCCCTGGCGACGGCGCCATCGCGCAGCTCGCTCTCACCGGCGCCAACGCCACCTCCGCCGGCGACATCTCCATGCGCTC
CCCGCGGGCCCGGGTACAGTACCACAAACCCATCCACTTGGCCCCCGCCGCCGCCGGCTTCTCAACCTACTTCTCCTTCT
CTCTCCACCCTAGCCCCAAATCTCACGCCGCCTCCATCGCCTTCTTCCTAACGCCCGCCGCGCC------------CTCG
CCCGCCGTTAACGCCCTCGCCG------TCGTCTTCGCCGCCGCGGACTCCAGCCACATCCGAGTCCAAATCGACCTCGC
CGGTGAAACGGCCGCCCAGACCGCCCCCCGCGGTATCCCCAAAAAGCTGCATTCCTGGATAGACTACAACGCCACATCCG
CCACGCTCCAGGTCCGTCTCTCCGCCTCGCGCCTCCCCAAGCCGCCGCGCGCGCTGCTCTCCCACCCGCTCCATCTCCAC
TCCGCCCTCCTCCTCC------TCCGCAGCAAGCCCATGCTCGCCGGATTCGCCTCCTCCCACGCCAACTGCAGCCTCTT
CAGCTGGGCCTTCAGGGCCAACCACGGGCCTCCCTACCTCATGCACTCCCAGCCACTCAATCCCACCGGCTTATCGCTCA
CCACGCCGCCGCCAGACCGCCTCCCCCGCGCTCCCCCGGGCAACCGCCACCCCTGGGTTTCGCTGCTGTTAGCTGCCGCG
TGCGGCGCCGTCTTCACATTCGTCCTGCTCTTCGTCTGGTACTCCATGGGGAAGCGCCGCCCGGTCGCGCCGGTGGAGTA
CCCCATGCACCCGTCCTCCGACGACATCATCTACGAGAAGATTGTGCTGGTCGGAGTCAAGGACCTCCCTGCCGATGTCA
CCGCAGCTGCTCACAAGTAGCCGCTATCCTCTCCTCTAGATTCTACTGCAAGTGTGCTCCTGTAACTGTAAGTAGGAAAT
TGTTGCTAGTAAGCGCGGTGGAAAATGCAGATTTTGCCGGCAAAGCGAACAAAGCAAATTCTGCACTTCCCACCGGGATT
AGGATTCGATTGCTCTTTCTAAATTGTAACTTGTCAATTGTCATGTCATCCACCACTGCTACCACTTCTTCTTTGTATGC
TTATTAGT-CATGT----CCTAGTACTATTCAAGAGCTCATCTTATCATCTCTAATGGACAGAGTAACATGATGTTTGTT
TTTTCGGCGAATGCACATAATATAGCTGATGACAAATTGAGGCATGATATATGAGTATCTGTATCGCGGTTTGTTCCAAA
A-TATAGGTAAAATTTCACAACTCCGCCCGATTTCTGCTCAATCCCCAGATACTGAATGCATCCACCGAGTTCTTTAGTG
ACTGCTCCTCCTCAATTTATGCGCTTGTGCTTTGCAGAGTTGCTAGCTTTGGTGATTGCTCCCCCTCAATAATGCACCTG
TGCTTTTCAAACGCACTTCACCACTGCTGTTTAATTTACTCCTGCATTAGTAGATTCGGAGTTTCTTCTTCGGCAGCTTC
AACTTGCGGGAGACTCTTGTTGCAGTTTGGTGGCATGGTTCTGTGCCAAGTTGC-TTAACAAGATGCTGCTAGGTGCAGT
TCAGTTGGCCAAAGCCACTTTGCATTAATATTGGAGATGTGCACGAGAGTGCTGAAATCATTATGGGAGATCTAGGTGCA
TGCTATATGCCCATTGCTACTTTCAGTTAGGAACCACTAGCTGTATTATGGCATCCAGGATTCCAGGGTTTGCTTTACTT
TTAGGTTACTTGTATCCTGGAACCTGATGCTGTTTTTGGCTGACCAGTTGCATATTGAAAGATGTAAAGACGACAAGTTA
TTATGAAATATACGATCATTTTTAGTAAT------------------------------------------------
>SNPs
----------------------------S---------------------------------------------------
--------------------------------------------S----SSSSS--------------------------
-----------S------------------S---------------SS-SS-S--SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS-----------------------------S----------------------------------
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----------------------------------------------------S---------------------------
--------------------S---------------------------S-------------------------------
--------SS----------------------------------------------------------------------
---------------------SS------------S-S-----------------SSSSSSSSSS---------------
------S-S--S------------------------------------SSS--------------------S--------
------------------S--S------------------S-S-------------------------------------
----------------------------------------------------S---------------------------
-----------------------------------------------S--------------------------------
---------------------------------S-----S-----------------------S----------------
------------S---------------------------------------------------SSSSSSSSSSSS---S
---------------------SSSSSSS----------------------------------------------------
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-------S----------------------------------------S-------------------------------
----------------SSSSSS-------------------------------S--------------------------
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------------------------S--------------------------------S------------------S---
-----------------------------------------------------------S--------------------
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-------------------------S------------------------------------------------------
-------------S-----------------------S------------------------------------------
------------------------------------S--------S----------------------------------
-------------SSSSS-------------------S----S----------------------------S--------
-------------------------------------------------------------------S--------S---
-S-----S------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
------S-------------------------------------------------------------------------
------------------------------------------------------S-------S-----------------
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--------------------------------S-----------------------------------------------
-------------------------S------------------------------------------------------
------------S----------S-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_366
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--------------------------AGAGGAGAGAGAGAGGGGGA----------------------------------
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>reverse_2606
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---------------------------------------------CCATCCACCACTGCTACCAC---------------
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