Multiple sequence alignment - TraesCS2B01G281300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G281300 chr2B 100.000 4605 0 0 1 4605 388500410 388505014 0.000000e+00 8504.0
1 TraesCS2B01G281300 chr2B 82.599 431 53 18 2726 3148 388502655 388503071 1.220000e-95 361.0
2 TraesCS2B01G281300 chr2B 82.599 431 53 18 2246 2662 388503135 388503557 1.220000e-95 361.0
3 TraesCS2B01G281300 chr2B 88.686 274 23 5 4336 4601 443830311 443830584 1.240000e-85 327.0
4 TraesCS2B01G281300 chr2B 86.594 276 29 3 4334 4601 34089654 34089379 9.690000e-77 298.0
5 TraesCS2B01G281300 chr2B 87.437 199 20 4 2998 3193 388503139 388503335 1.670000e-54 224.0
6 TraesCS2B01G281300 chr2B 87.437 199 20 4 2730 2926 388503407 388503602 1.670000e-54 224.0
7 TraesCS2B01G281300 chr2B 87.363 182 15 4 2730 2909 388502926 388503101 7.810000e-48 202.0
8 TraesCS2B01G281300 chr2B 87.363 182 15 4 2517 2692 388503139 388503318 7.810000e-48 202.0
9 TraesCS2B01G281300 chr2B 87.349 166 20 1 2562 2727 388502713 388502877 6.080000e-44 189.0
10 TraesCS2B01G281300 chr2B 87.349 166 20 1 2304 2468 388502971 388503136 6.080000e-44 189.0
11 TraesCS2B01G281300 chr2D 88.369 2631 193 55 146 2723 320250632 320253202 0.000000e+00 3059.0
12 TraesCS2B01G281300 chr2D 90.121 1488 71 27 2725 4167 320252984 320254440 0.000000e+00 1864.0
13 TraesCS2B01G281300 chr2D 81.775 417 55 12 2260 2662 320252996 320253405 3.430000e-86 329.0
14 TraesCS2B01G281300 chr2D 87.770 278 26 4 4334 4603 589281330 589281053 7.430000e-83 318.0
15 TraesCS2B01G281300 chr2D 88.947 190 18 3 2990 3178 320252981 320253168 9.960000e-57 231.0
16 TraesCS2B01G281300 chr2D 87.685 203 20 4 2725 2926 320253251 320253449 9.960000e-57 231.0
17 TraesCS2B01G281300 chr2D 98.750 80 1 0 4159 4238 320254470 320254549 4.800000e-30 143.0
18 TraesCS2B01G281300 chr2A 90.482 2322 150 32 7 2311 410863934 410861667 0.000000e+00 2998.0
19 TraesCS2B01G281300 chr2A 93.043 1538 70 21 2368 3890 410861666 410860151 0.000000e+00 2213.0
20 TraesCS2B01G281300 chr2A 81.903 431 54 14 2246 2662 410861301 410860881 4.410000e-90 342.0
21 TraesCS2B01G281300 chr2A 91.304 184 14 2 2728 2909 410861518 410861335 2.750000e-62 250.0
22 TraesCS2B01G281300 chr2A 87.500 184 20 3 2730 2912 410861030 410860849 4.670000e-50 209.0
23 TraesCS2B01G281300 chr2A 83.636 220 21 6 2517 2725 410861297 410861082 4.700000e-45 193.0
24 TraesCS2B01G281300 chr2A 83.092 207 10 8 4054 4238 410860088 410859885 1.020000e-36 165.0
25 TraesCS2B01G281300 chr2A 76.349 241 46 10 1314 1551 256699738 256699506 8.090000e-23 119.0
26 TraesCS2B01G281300 chr2A 89.655 87 9 0 4239 4325 410859850 410859764 1.350000e-20 111.0
27 TraesCS2B01G281300 chr5A 91.770 243 20 0 1000 1242 588852153 588852395 5.710000e-89 339.0
28 TraesCS2B01G281300 chr5A 79.787 282 44 11 1274 1551 588852523 588852795 4.700000e-45 193.0
29 TraesCS2B01G281300 chr5D 88.645 273 31 0 1000 1272 468651741 468652013 2.660000e-87 333.0
30 TraesCS2B01G281300 chr5D 78.369 282 48 11 1274 1551 468652137 468652409 2.200000e-38 171.0
31 TraesCS2B01G281300 chr5D 78.689 244 35 13 1314 1551 189931076 189931308 3.710000e-31 147.0
32 TraesCS2B01G281300 chr5B 91.358 243 21 0 1000 1242 575253007 575253249 2.660000e-87 333.0
33 TraesCS2B01G281300 chr5B 78.723 282 47 10 1274 1551 575253395 575253667 4.740000e-40 176.0
34 TraesCS2B01G281300 chr7A 87.050 278 28 5 4332 4601 134560676 134560399 1.610000e-79 307.0
35 TraesCS2B01G281300 chr3D 84.946 279 33 6 4334 4603 443427867 443428145 1.630000e-69 274.0
36 TraesCS2B01G281300 chr1B 82.105 285 42 6 4326 4601 2327874 2328158 7.700000e-58 235.0
37 TraesCS2B01G281300 chr1B 82.700 237 33 6 4334 4562 709481 709717 2.170000e-48 204.0
38 TraesCS2B01G281300 chr1D 81.992 261 38 6 4334 4585 2890959 2890699 3.610000e-51 213.0
39 TraesCS2B01G281300 chr1D 80.272 147 25 3 4384 4527 63366610 63366465 1.750000e-19 108.0
40 TraesCS2B01G281300 chr7D 83.571 140 23 0 4464 4603 43039412 43039551 1.040000e-26 132.0
41 TraesCS2B01G281300 chr7B 75.405 309 54 18 1274 1573 493132354 493132059 3.740000e-26 130.0
42 TraesCS2B01G281300 chr7B 80.240 167 23 6 17 173 243253202 243253368 2.910000e-22 117.0
43 TraesCS2B01G281300 chr3B 85.714 70 6 3 18 85 235134959 235135026 2.300000e-08 71.3
44 TraesCS2B01G281300 chr3B 86.364 66 7 2 349 413 769397283 769397219 2.300000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G281300 chr2B 388500410 388505014 4604 False 1161.777778 8504 87.721778 1 4605 9 chr2B.!!$F2 4604
1 TraesCS2B01G281300 chr2D 320250632 320254549 3917 False 976.166667 3059 89.274500 146 4238 6 chr2D.!!$F1 4092
2 TraesCS2B01G281300 chr2A 410859764 410863934 4170 True 810.125000 2998 87.576875 7 4325 8 chr2A.!!$R2 4318
3 TraesCS2B01G281300 chr5A 588852153 588852795 642 False 266.000000 339 85.778500 1000 1551 2 chr5A.!!$F1 551
4 TraesCS2B01G281300 chr5D 468651741 468652409 668 False 252.000000 333 83.507000 1000 1551 2 chr5D.!!$F2 551
5 TraesCS2B01G281300 chr5B 575253007 575253667 660 False 254.500000 333 85.040500 1000 1551 2 chr5B.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
923 968 0.037605 AACCCTAACGTCTTCCTGCG 60.038 55.000 0.0 0.0 0.0 5.18 F
2363 2549 1.065926 TGCTACTCTTGATGGGTGCTG 60.066 52.381 0.0 0.0 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2736 2929 0.031994 AAACGCCACAGCCAAATGTC 59.968 50.0 0.0 0.0 34.57 3.06 R
4334 4650 0.110192 GCAAGCAAGTCAACGGTAGC 60.110 55.0 0.0 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.795399 CAAGAGACCACTTGTATTTGTTTGT 58.205 36.000 0.00 0.00 41.32 2.83
28 29 7.730364 AGAGACCACTTGTATTTGTTTGTAG 57.270 36.000 0.00 0.00 0.00 2.74
33 34 7.061688 ACCACTTGTATTTGTTTGTAGGGTTA 58.938 34.615 0.00 0.00 0.00 2.85
43 44 7.979444 TTGTTTGTAGGGTTATTTGAGAGAG 57.021 36.000 0.00 0.00 0.00 3.20
49 50 7.130099 TGTAGGGTTATTTGAGAGAGACCATA 58.870 38.462 0.00 0.00 0.00 2.74
53 54 7.348274 AGGGTTATTTGAGAGAGACCATATTCA 59.652 37.037 0.00 0.00 0.00 2.57
61 62 3.812053 GAGAGACCATATTCACCATGCAC 59.188 47.826 0.00 0.00 0.00 4.57
64 65 2.620115 GACCATATTCACCATGCACCTG 59.380 50.000 0.00 0.00 0.00 4.00
92 93 6.183360 GCGGATTGATAAACCTTAAACCATGA 60.183 38.462 0.00 0.00 0.00 3.07
103 104 6.811954 ACCTTAAACCATGAAAATTTGTCGT 58.188 32.000 0.00 0.00 0.00 4.34
105 106 8.414778 ACCTTAAACCATGAAAATTTGTCGTTA 58.585 29.630 0.00 0.00 0.00 3.18
131 132 3.832527 ACAAAACTCTATGCTTGGTGGT 58.167 40.909 0.00 0.00 0.00 4.16
176 177 4.362677 AGTTATGTAGTGGACATCACCCT 58.637 43.478 0.00 0.00 46.33 4.34
208 209 2.877975 GGCTGGCCCATATGCATAG 58.122 57.895 12.79 4.59 0.00 2.23
334 337 8.628630 ATTTGAGGTTTCCAAAAACTTTCAAA 57.371 26.923 21.61 21.61 46.88 2.69
335 338 8.628630 TTTGAGGTTTCCAAAAACTTTCAAAT 57.371 26.923 18.73 0.00 43.66 2.32
336 339 8.628630 TTGAGGTTTCCAAAAACTTTCAAATT 57.371 26.923 13.69 0.00 43.55 1.82
337 340 9.726438 TTGAGGTTTCCAAAAACTTTCAAATTA 57.274 25.926 13.69 0.50 43.55 1.40
338 341 9.726438 TGAGGTTTCCAAAAACTTTCAAATTAA 57.274 25.926 1.53 0.00 43.55 1.40
433 446 9.547753 TTATGATTTTGAAAAATGTTCGGGAAA 57.452 25.926 5.76 0.00 38.64 3.13
434 447 8.620116 ATGATTTTGAAAAATGTTCGGGAAAT 57.380 26.923 5.76 0.00 38.64 2.17
435 448 8.443953 TGATTTTGAAAAATGTTCGGGAAATT 57.556 26.923 5.76 0.00 38.64 1.82
436 449 8.341173 TGATTTTGAAAAATGTTCGGGAAATTG 58.659 29.630 5.76 0.00 38.64 2.32
622 639 9.703892 TTCACCAAAACAATATAGGTTTTCATG 57.296 29.630 12.68 13.04 44.24 3.07
623 640 8.865090 TCACCAAAACAATATAGGTTTTCATGT 58.135 29.630 12.68 9.15 44.24 3.21
692 711 5.908499 CCAAAATTGTTTGCCGATTCAAAAG 59.092 36.000 0.00 0.00 42.44 2.27
744 763 4.954118 TGGGCACGGGACTGACCT 62.954 66.667 0.00 0.00 40.52 3.85
923 968 0.037605 AACCCTAACGTCTTCCTGCG 60.038 55.000 0.00 0.00 0.00 5.18
1406 1584 2.927477 TCAAGTACGCGCCTTATCTTTG 59.073 45.455 5.73 0.14 0.00 2.77
1451 1629 8.289618 CGGATTTAATTAGTTATGTGGTGATGG 58.710 37.037 0.00 0.00 0.00 3.51
1465 1643 3.901222 TGGTGATGGTCTTTGTCTGACTA 59.099 43.478 9.51 0.00 35.04 2.59
1581 1759 8.436046 AACTATCAAGGTACGTTTTGTTACAA 57.564 30.769 0.00 0.00 0.00 2.41
1595 1773 4.123497 TGTTACAATCGATCACTCTGGG 57.877 45.455 0.00 0.00 0.00 4.45
1614 1792 3.222603 GGGTGTCACCTCTGAACAAAAT 58.777 45.455 21.40 0.00 38.64 1.82
1615 1793 3.004734 GGGTGTCACCTCTGAACAAAATG 59.995 47.826 21.40 0.00 38.64 2.32
1616 1794 3.882888 GGTGTCACCTCTGAACAAAATGA 59.117 43.478 15.22 0.00 34.73 2.57
1617 1795 4.520492 GGTGTCACCTCTGAACAAAATGAT 59.480 41.667 15.22 0.00 34.73 2.45
1618 1796 5.455392 GTGTCACCTCTGAACAAAATGATG 58.545 41.667 0.00 0.00 0.00 3.07
1619 1797 5.239306 GTGTCACCTCTGAACAAAATGATGA 59.761 40.000 0.00 0.00 0.00 2.92
1620 1798 5.471116 TGTCACCTCTGAACAAAATGATGAG 59.529 40.000 0.00 0.00 0.00 2.90
1650 1829 4.136796 TGCATACATATGACTCTTTGGCC 58.863 43.478 10.38 0.00 35.75 5.36
1664 1843 4.415596 TCTTTGGCCCACAATGTTAGATT 58.584 39.130 0.00 0.00 39.21 2.40
1665 1844 4.220382 TCTTTGGCCCACAATGTTAGATTG 59.780 41.667 0.00 0.31 39.21 2.67
1666 1845 3.168035 TGGCCCACAATGTTAGATTGT 57.832 42.857 0.00 1.69 42.38 2.71
1710 1889 6.808008 AGTTTGTAGATGTCAACCAGATTG 57.192 37.500 0.00 0.00 39.94 2.67
1724 1903 9.132521 GTCAACCAGATTGTTATTGAGAATTTG 57.867 33.333 0.00 0.00 39.54 2.32
1763 1942 6.714810 TCACTGTGTGGCTAAGTCAAAATTAT 59.285 34.615 7.79 0.00 33.87 1.28
1796 1975 5.959618 GCTGAAACACAGGTTAGGTTAAT 57.040 39.130 0.00 0.00 45.82 1.40
1797 1976 5.939457 GCTGAAACACAGGTTAGGTTAATC 58.061 41.667 0.00 0.00 45.82 1.75
1800 1979 6.056884 TGAAACACAGGTTAGGTTAATCGTT 58.943 36.000 0.00 0.00 35.82 3.85
1807 1986 3.066203 GGTTAGGTTAATCGTTGCCATGG 59.934 47.826 7.63 7.63 0.00 3.66
1849 2028 6.318648 GTGATAGGGTGAAATGCTGAATTGTA 59.681 38.462 0.00 0.00 0.00 2.41
1914 2095 4.828829 TCCTTTTGTGCTTAGCCTAGTAC 58.171 43.478 0.29 0.00 0.00 2.73
1926 2107 4.537945 AGCCTAGTACCTTCCATCAGTA 57.462 45.455 0.00 0.00 0.00 2.74
1951 2135 5.455392 CCTTGTTAAGTGCATTGAGAACTG 58.545 41.667 0.00 0.00 0.00 3.16
1982 2167 7.914346 TGTGCCATTTGAATTTGTTGATTTTTC 59.086 29.630 0.00 0.00 0.00 2.29
1989 2174 8.838452 TTGAATTTGTTGATTTTTCACATTGC 57.162 26.923 0.00 0.00 0.00 3.56
2142 2328 6.315393 GCTATTTTAATTCGTCTGTTCCCTCA 59.685 38.462 0.00 0.00 0.00 3.86
2150 2336 2.672478 CGTCTGTTCCCTCATGTCTGAC 60.672 54.545 0.00 0.00 0.00 3.51
2278 2464 6.717540 TGTAGTAACATTTGGCTGTGGTTATT 59.282 34.615 0.00 0.00 0.00 1.40
2286 2472 6.449635 TTTGGCTGTGGTTATTATCATGTC 57.550 37.500 0.00 0.00 0.00 3.06
2331 2517 9.616634 GTGTTTTAATGATATGCCTATGATGTG 57.383 33.333 0.00 0.00 0.00 3.21
2363 2549 1.065926 TGCTACTCTTGATGGGTGCTG 60.066 52.381 0.00 0.00 0.00 4.41
2377 2563 2.031163 GCTGCCCAGTTGACGACT 59.969 61.111 0.00 0.00 39.89 4.18
2417 2603 1.735571 AGGCGTATTTAACAACCAGCG 59.264 47.619 0.00 0.00 0.00 5.18
2461 2647 6.621316 TTTGTTGGCTAGTTCGTTTCAATA 57.379 33.333 0.00 0.00 0.00 1.90
2497 2684 9.507280 CAGATACAAATCATAAAACTGCGATTT 57.493 29.630 0.00 0.00 38.32 2.17
2515 2702 1.398692 TTGGACTTTGGCACCTGTTC 58.601 50.000 0.00 0.00 0.00 3.18
2531 2718 4.895297 ACCTGTTCCTCATTCAACATTTGT 59.105 37.500 0.00 0.00 32.13 2.83
2561 2748 7.946655 GCTTTTAGCCTGTTCTTTTATTTGT 57.053 32.000 0.00 0.00 34.48 2.83
2617 2810 9.289782 GATTAATATTTGCTACTCTTGATGGGT 57.710 33.333 0.00 0.00 0.00 4.51
2672 2865 4.841246 TCTCTGAGGCCTCTTTTAACTTCT 59.159 41.667 32.28 0.00 0.00 2.85
2675 2868 4.833390 TGAGGCCTCTTTTAACTTCTAGC 58.167 43.478 32.28 1.96 0.00 3.42
2745 2938 7.605410 ATTTGATTCTCATTTGACATTTGGC 57.395 32.000 0.00 0.00 0.00 4.52
2751 2944 2.070783 CATTTGACATTTGGCTGTGGC 58.929 47.619 0.00 0.00 37.82 5.01
2914 3107 8.749354 ACCAGGGATTGTTTTCTTATTATTGTC 58.251 33.333 0.00 0.00 0.00 3.18
3029 3222 1.616159 TGACTTGGCTTTTACCCTGC 58.384 50.000 0.00 0.00 0.00 4.85
3051 3244 6.061441 TGCTCTTTTGTTTGATTCTCCTGTA 58.939 36.000 0.00 0.00 0.00 2.74
3150 3343 2.117865 CAAGATCTCTGAGGCCTCCTT 58.882 52.381 29.95 20.24 31.76 3.36
3262 3456 6.375736 TCGTAATGATGTTAGAAAAATGGCCA 59.624 34.615 8.56 8.56 0.00 5.36
3263 3457 7.068103 TCGTAATGATGTTAGAAAAATGGCCAT 59.932 33.333 14.09 14.09 0.00 4.40
3266 3460 6.602410 TGATGTTAGAAAAATGGCCATTGA 57.398 33.333 31.28 11.84 0.00 2.57
3267 3461 6.397272 TGATGTTAGAAAAATGGCCATTGAC 58.603 36.000 31.28 22.73 0.00 3.18
3268 3462 5.146010 TGTTAGAAAAATGGCCATTGACC 57.854 39.130 31.28 20.91 0.00 4.02
3269 3463 4.590647 TGTTAGAAAAATGGCCATTGACCA 59.409 37.500 31.28 16.97 42.61 4.02
3270 3464 3.683365 AGAAAAATGGCCATTGACCAC 57.317 42.857 31.28 19.21 40.82 4.16
3271 3465 2.302733 AGAAAAATGGCCATTGACCACC 59.697 45.455 31.28 16.34 40.82 4.61
3272 3466 1.727062 AAAATGGCCATTGACCACCA 58.273 45.000 31.28 0.00 40.82 4.17
3273 3467 1.727062 AAATGGCCATTGACCACCAA 58.273 45.000 31.28 0.00 40.82 3.67
3274 3468 1.269012 AATGGCCATTGACCACCAAG 58.731 50.000 30.17 0.00 40.82 3.61
3275 3469 0.409092 ATGGCCATTGACCACCAAGA 59.591 50.000 14.09 0.00 40.82 3.02
3284 3478 3.576078 TGACCACCAAGATCTTGTTGT 57.424 42.857 29.03 22.54 38.85 3.32
3293 3487 5.011329 ACCAAGATCTTGTTGTGCATTTCAT 59.989 36.000 29.03 0.00 38.85 2.57
3294 3488 6.209192 ACCAAGATCTTGTTGTGCATTTCATA 59.791 34.615 29.03 0.00 38.85 2.15
3295 3489 6.750501 CCAAGATCTTGTTGTGCATTTCATAG 59.249 38.462 29.03 8.38 38.85 2.23
3296 3490 7.310664 CAAGATCTTGTTGTGCATTTCATAGT 58.689 34.615 24.65 0.00 35.92 2.12
3298 3492 7.310664 AGATCTTGTTGTGCATTTCATAGTTG 58.689 34.615 0.00 0.00 0.00 3.16
3299 3493 6.631971 TCTTGTTGTGCATTTCATAGTTGA 57.368 33.333 0.00 0.00 0.00 3.18
3331 3525 1.194781 ACCACCAAGATCTCCAGCGT 61.195 55.000 0.00 0.00 0.00 5.07
3366 3561 7.227049 TCTTGATTGGGGACTGTTTTTAATC 57.773 36.000 0.00 0.00 0.00 1.75
3404 3602 7.520453 CGCATGCCTTGAAAACATATGTATACT 60.520 37.037 13.15 0.00 0.00 2.12
3442 3640 3.173953 TGGAAAATGGCTCATCACCTT 57.826 42.857 0.00 0.00 0.00 3.50
3490 3688 2.837591 GGAGAAGAGAAAGGAGAAGGCT 59.162 50.000 0.00 0.00 0.00 4.58
3611 3809 4.096382 CACCAATCAAATACTAGTGTGCCC 59.904 45.833 5.39 0.00 0.00 5.36
3662 3860 6.885376 TGGATAATGGTGGTTATTGTTTACGT 59.115 34.615 0.00 0.00 0.00 3.57
3663 3861 7.393796 TGGATAATGGTGGTTATTGTTTACGTT 59.606 33.333 0.00 0.00 0.00 3.99
3664 3862 8.891720 GGATAATGGTGGTTATTGTTTACGTTA 58.108 33.333 0.00 0.00 0.00 3.18
3705 3903 5.236478 GTCGTTGAGATTTGAAACCTCTGAA 59.764 40.000 0.35 0.00 0.00 3.02
3776 3974 1.762708 TTTCGCCCCATGAGATTTCC 58.237 50.000 0.00 0.00 0.00 3.13
3777 3975 0.918983 TTCGCCCCATGAGATTTCCT 59.081 50.000 0.00 0.00 0.00 3.36
3783 3981 3.073650 GCCCCATGAGATTTCCTAGATGT 59.926 47.826 0.00 0.00 0.00 3.06
3784 3982 4.446889 GCCCCATGAGATTTCCTAGATGTT 60.447 45.833 0.00 0.00 0.00 2.71
3785 3983 5.068636 CCCCATGAGATTTCCTAGATGTTG 58.931 45.833 0.00 0.00 0.00 3.33
3786 3984 4.518211 CCCATGAGATTTCCTAGATGTTGC 59.482 45.833 0.00 0.00 0.00 4.17
3823 4024 2.428890 TGTTTTTGTTGTCGCCAGGAAT 59.571 40.909 0.00 0.00 0.00 3.01
3827 4028 3.907894 TTGTTGTCGCCAGGAATTTAC 57.092 42.857 0.00 0.00 0.00 2.01
3849 4053 2.287547 GCTTCTAGATCCAGCTCTCACG 60.288 54.545 7.52 0.00 0.00 4.35
3898 4103 1.202348 ACATTGATCCGCTGAGTCTCG 60.202 52.381 0.00 0.00 0.00 4.04
3911 4116 4.799678 CTGAGTCTCGGCGTGATATAAAT 58.200 43.478 15.14 0.00 0.00 1.40
3916 4121 5.692204 AGTCTCGGCGTGATATAAATTGAAG 59.308 40.000 15.14 0.00 0.00 3.02
3943 4148 3.001330 GGCAAACTGAGATTATCGAACGG 59.999 47.826 0.00 0.00 0.00 4.44
3956 4161 2.690786 TCGAACGGGAAGTAAACATGG 58.309 47.619 0.00 0.00 0.00 3.66
3998 4218 2.731571 CCCAGCGCTGCTACCCTTA 61.732 63.158 31.96 0.00 36.40 2.69
4006 4226 1.410882 GCTGCTACCCTTAGAGGAGTG 59.589 57.143 0.00 0.00 37.67 3.51
4008 4228 1.007238 TGCTACCCTTAGAGGAGTGCT 59.993 52.381 0.00 0.00 37.67 4.40
4047 4282 0.470766 TACCGGTTCAGGTGTTTGCT 59.529 50.000 15.04 0.00 45.54 3.91
4086 4331 4.703703 GCGAGGTTTTCTCTGCCT 57.296 55.556 0.00 0.00 40.30 4.75
4092 4337 3.307242 CGAGGTTTTCTCTGCCTATTTCG 59.693 47.826 0.00 0.00 40.30 3.46
4133 4378 0.947660 CCTCACCATCATGCGATCCG 60.948 60.000 0.00 0.00 0.00 4.18
4136 4381 0.530431 CACCATCATGCGATCCGACA 60.530 55.000 0.00 0.00 0.00 4.35
4198 4483 7.710907 CAGAATATCTTCTATTTCCACGTTGGA 59.289 37.037 3.02 3.02 41.42 3.53
4253 4569 4.019174 CCAGAAATTGGTAGGTTGCATCT 58.981 43.478 0.00 0.00 42.41 2.90
4254 4570 5.192927 CCAGAAATTGGTAGGTTGCATCTA 58.807 41.667 0.00 0.00 42.41 1.98
4259 4575 8.253113 AGAAATTGGTAGGTTGCATCTATTTTG 58.747 33.333 0.00 0.00 0.00 2.44
4260 4576 5.913137 TTGGTAGGTTGCATCTATTTTGG 57.087 39.130 0.00 0.00 0.00 3.28
4269 4585 5.659440 TGCATCTATTTTGGGGTCTTTTC 57.341 39.130 0.00 0.00 0.00 2.29
4272 4588 6.894654 TGCATCTATTTTGGGGTCTTTTCATA 59.105 34.615 0.00 0.00 0.00 2.15
4289 4605 5.745312 TTCATATGTGACTCAGTTGGACT 57.255 39.130 1.90 0.00 33.11 3.85
4291 4607 5.482006 TCATATGTGACTCAGTTGGACTTG 58.518 41.667 1.90 0.00 0.00 3.16
4321 4637 3.591196 ATGTATGCCAAAAACGCATGT 57.409 38.095 5.58 0.00 46.24 3.21
4331 4647 0.239879 AAACGCATGTTTGGCTACCG 59.760 50.000 0.00 0.00 46.28 4.02
4332 4648 0.887387 AACGCATGTTTGGCTACCGT 60.887 50.000 0.00 0.00 33.53 4.83
4333 4649 0.037139 ACGCATGTTTGGCTACCGTA 60.037 50.000 0.00 0.00 0.00 4.02
4334 4650 0.650512 CGCATGTTTGGCTACCGTAG 59.349 55.000 0.76 0.76 0.00 3.51
4345 4661 2.465210 CTACCGTAGCTACCGTTGAC 57.535 55.000 20.48 0.00 0.00 3.18
4346 4662 2.012673 CTACCGTAGCTACCGTTGACT 58.987 52.381 20.48 1.21 0.00 3.41
4347 4663 1.251251 ACCGTAGCTACCGTTGACTT 58.749 50.000 18.16 0.00 0.00 3.01
4348 4664 1.068055 ACCGTAGCTACCGTTGACTTG 60.068 52.381 18.16 0.73 0.00 3.16
4349 4665 0.989890 CGTAGCTACCGTTGACTTGC 59.010 55.000 18.16 0.00 0.00 4.01
4350 4666 1.402456 CGTAGCTACCGTTGACTTGCT 60.402 52.381 18.16 0.00 34.92 3.91
4351 4667 2.685100 GTAGCTACCGTTGACTTGCTT 58.315 47.619 13.20 0.00 32.72 3.91
4352 4668 1.512926 AGCTACCGTTGACTTGCTTG 58.487 50.000 0.00 0.00 0.00 4.01
4353 4669 0.110192 GCTACCGTTGACTTGCTTGC 60.110 55.000 0.00 0.00 0.00 4.01
4354 4670 0.163788 CTACCGTTGACTTGCTTGCG 59.836 55.000 0.00 0.00 0.00 4.85
4355 4671 1.837538 TACCGTTGACTTGCTTGCGC 61.838 55.000 0.00 0.00 0.00 6.09
4356 4672 2.633657 CGTTGACTTGCTTGCGCT 59.366 55.556 9.73 0.00 36.97 5.92
4357 4673 1.439365 CGTTGACTTGCTTGCGCTC 60.439 57.895 9.73 0.00 36.97 5.03
4358 4674 1.835483 CGTTGACTTGCTTGCGCTCT 61.835 55.000 9.73 0.00 36.97 4.09
4359 4675 0.385223 GTTGACTTGCTTGCGCTCTG 60.385 55.000 9.73 0.00 36.97 3.35
4360 4676 1.509644 TTGACTTGCTTGCGCTCTGG 61.510 55.000 9.73 0.00 36.97 3.86
4361 4677 2.670934 ACTTGCTTGCGCTCTGGG 60.671 61.111 9.73 0.00 36.97 4.45
4362 4678 2.670934 CTTGCTTGCGCTCTGGGT 60.671 61.111 9.73 0.00 36.97 4.51
4363 4679 2.974489 CTTGCTTGCGCTCTGGGTG 61.974 63.158 9.73 0.00 36.97 4.61
4364 4680 3.474486 TTGCTTGCGCTCTGGGTGA 62.474 57.895 9.73 0.00 36.97 4.02
4365 4681 3.123620 GCTTGCGCTCTGGGTGAG 61.124 66.667 9.73 0.00 45.33 3.51
4366 4682 2.659016 CTTGCGCTCTGGGTGAGA 59.341 61.111 9.73 0.00 45.39 3.27
4367 4683 1.004560 CTTGCGCTCTGGGTGAGAA 60.005 57.895 9.73 0.00 45.39 2.87
4368 4684 1.294659 CTTGCGCTCTGGGTGAGAAC 61.295 60.000 9.73 0.00 45.39 3.01
4369 4685 2.435059 GCGCTCTGGGTGAGAACC 60.435 66.667 0.00 0.00 45.39 3.62
4370 4686 2.948720 GCGCTCTGGGTGAGAACCT 61.949 63.158 0.00 0.00 45.39 3.50
4371 4687 1.605058 GCGCTCTGGGTGAGAACCTA 61.605 60.000 0.00 0.00 45.39 3.08
4372 4688 0.457851 CGCTCTGGGTGAGAACCTAG 59.542 60.000 2.06 2.06 45.39 3.02
4373 4689 1.853963 GCTCTGGGTGAGAACCTAGA 58.146 55.000 10.15 10.15 45.39 2.43
4374 4690 1.478916 GCTCTGGGTGAGAACCTAGAC 59.521 57.143 6.85 2.12 45.39 2.59
4375 4691 2.104170 CTCTGGGTGAGAACCTAGACC 58.896 57.143 6.85 0.00 45.39 3.85
4377 4693 3.393854 GGGTGAGAACCTAGACCCA 57.606 57.895 9.65 0.00 46.52 4.51
4378 4694 1.196012 GGGTGAGAACCTAGACCCAG 58.804 60.000 9.65 0.00 46.52 4.45
4379 4695 1.552719 GGGTGAGAACCTAGACCCAGT 60.553 57.143 9.65 0.00 46.52 4.00
4380 4696 2.258109 GGTGAGAACCTAGACCCAGTT 58.742 52.381 0.00 0.00 0.00 3.16
4381 4697 2.638363 GGTGAGAACCTAGACCCAGTTT 59.362 50.000 0.00 0.00 0.00 2.66
4382 4698 3.306849 GGTGAGAACCTAGACCCAGTTTC 60.307 52.174 0.00 0.00 0.00 2.78
4383 4699 2.904434 TGAGAACCTAGACCCAGTTTCC 59.096 50.000 0.00 0.00 0.00 3.13
4384 4700 2.236644 GAGAACCTAGACCCAGTTTCCC 59.763 54.545 0.00 0.00 0.00 3.97
4385 4701 0.981943 AACCTAGACCCAGTTTCCCG 59.018 55.000 0.00 0.00 0.00 5.14
4386 4702 0.908180 ACCTAGACCCAGTTTCCCGG 60.908 60.000 0.00 0.00 0.00 5.73
4387 4703 0.908180 CCTAGACCCAGTTTCCCGGT 60.908 60.000 0.00 0.00 0.00 5.28
4388 4704 0.981943 CTAGACCCAGTTTCCCGGTT 59.018 55.000 0.00 0.00 0.00 4.44
4389 4705 0.978907 TAGACCCAGTTTCCCGGTTC 59.021 55.000 0.00 0.00 0.00 3.62
4390 4706 1.670083 GACCCAGTTTCCCGGTTCG 60.670 63.158 0.00 0.00 0.00 3.95
4408 4724 4.570663 GACGATGGCGGCGCTAGT 62.571 66.667 32.30 23.97 43.17 2.57
4409 4725 4.873129 ACGATGGCGGCGCTAGTG 62.873 66.667 32.30 23.18 43.17 2.74
4410 4726 4.873129 CGATGGCGGCGCTAGTGT 62.873 66.667 32.30 11.24 0.00 3.55
4411 4727 2.962253 GATGGCGGCGCTAGTGTC 60.962 66.667 32.30 16.71 0.00 3.67
4412 4728 4.873129 ATGGCGGCGCTAGTGTCG 62.873 66.667 32.30 25.20 0.00 4.35
4419 4735 2.409651 CGCTAGTGTCGCTCTCCC 59.590 66.667 0.00 0.00 0.00 4.30
4420 4736 2.115911 CGCTAGTGTCGCTCTCCCT 61.116 63.158 0.00 0.00 0.00 4.20
4421 4737 1.731093 GCTAGTGTCGCTCTCCCTC 59.269 63.158 0.00 0.00 0.00 4.30
4422 4738 1.032657 GCTAGTGTCGCTCTCCCTCA 61.033 60.000 0.00 0.00 0.00 3.86
4423 4739 1.686355 CTAGTGTCGCTCTCCCTCAT 58.314 55.000 0.00 0.00 0.00 2.90
4424 4740 1.336440 CTAGTGTCGCTCTCCCTCATG 59.664 57.143 0.00 0.00 0.00 3.07
4425 4741 1.142748 GTGTCGCTCTCCCTCATGG 59.857 63.158 0.00 0.00 0.00 3.66
4435 4751 2.597340 CCTCATGGGGGCATCGTT 59.403 61.111 2.60 0.00 0.00 3.85
4436 4752 1.076777 CCTCATGGGGGCATCGTTT 60.077 57.895 2.60 0.00 0.00 3.60
4437 4753 0.684153 CCTCATGGGGGCATCGTTTT 60.684 55.000 2.60 0.00 0.00 2.43
4438 4754 1.185315 CTCATGGGGGCATCGTTTTT 58.815 50.000 0.00 0.00 0.00 1.94
4439 4755 0.894141 TCATGGGGGCATCGTTTTTG 59.106 50.000 0.00 0.00 0.00 2.44
4440 4756 0.108233 CATGGGGGCATCGTTTTTGG 60.108 55.000 0.00 0.00 0.00 3.28
4441 4757 0.252012 ATGGGGGCATCGTTTTTGGA 60.252 50.000 0.00 0.00 0.00 3.53
4442 4758 0.897863 TGGGGGCATCGTTTTTGGAG 60.898 55.000 0.00 0.00 0.00 3.86
4443 4759 1.215382 GGGGCATCGTTTTTGGAGC 59.785 57.895 0.00 0.00 0.00 4.70
4444 4760 1.531739 GGGGCATCGTTTTTGGAGCA 61.532 55.000 0.00 0.00 0.00 4.26
4445 4761 0.109132 GGGCATCGTTTTTGGAGCAG 60.109 55.000 0.00 0.00 0.00 4.24
4446 4762 0.733909 GGCATCGTTTTTGGAGCAGC 60.734 55.000 0.00 0.00 0.00 5.25
4447 4763 0.242017 GCATCGTTTTTGGAGCAGCT 59.758 50.000 0.00 0.00 0.00 4.24
4448 4764 1.973138 CATCGTTTTTGGAGCAGCTG 58.027 50.000 10.11 10.11 0.00 4.24
4449 4765 0.242017 ATCGTTTTTGGAGCAGCTGC 59.758 50.000 31.53 31.53 42.49 5.25
4450 4766 1.372128 CGTTTTTGGAGCAGCTGCC 60.372 57.895 34.39 24.38 43.38 4.85
4451 4767 1.372128 GTTTTTGGAGCAGCTGCCG 60.372 57.895 34.39 0.00 43.38 5.69
4452 4768 2.563798 TTTTTGGAGCAGCTGCCGG 61.564 57.895 34.39 0.00 43.38 6.13
4453 4769 2.974692 TTTTTGGAGCAGCTGCCGGA 62.975 55.000 34.39 15.86 43.38 5.14
4454 4770 2.769652 TTTTGGAGCAGCTGCCGGAT 62.770 55.000 34.39 17.05 43.38 4.18
4455 4771 3.982316 TTGGAGCAGCTGCCGGATG 62.982 63.158 34.39 0.00 43.38 3.51
4460 4776 4.113815 CAGCTGCCGGATGGGGAA 62.114 66.667 5.05 0.00 34.72 3.97
4461 4777 3.801997 AGCTGCCGGATGGGGAAG 61.802 66.667 5.05 0.00 34.72 3.46
4462 4778 3.797353 GCTGCCGGATGGGGAAGA 61.797 66.667 5.05 0.00 34.24 2.87
4463 4779 2.190578 CTGCCGGATGGGGAAGAC 59.809 66.667 5.05 0.00 34.24 3.01
4464 4780 2.609299 TGCCGGATGGGGAAGACA 60.609 61.111 5.05 0.00 35.78 3.41
4465 4781 2.196997 CTGCCGGATGGGGAAGACAA 62.197 60.000 5.05 0.00 34.24 3.18
4466 4782 1.001393 GCCGGATGGGGAAGACAAA 60.001 57.895 5.05 0.00 35.78 2.83
4467 4783 0.610785 GCCGGATGGGGAAGACAAAA 60.611 55.000 5.05 0.00 35.78 2.44
4468 4784 1.463674 CCGGATGGGGAAGACAAAAG 58.536 55.000 0.00 0.00 0.00 2.27
4469 4785 1.463674 CGGATGGGGAAGACAAAAGG 58.536 55.000 0.00 0.00 0.00 3.11
4470 4786 1.271926 CGGATGGGGAAGACAAAAGGT 60.272 52.381 0.00 0.00 0.00 3.50
4471 4787 2.171003 GGATGGGGAAGACAAAAGGTG 58.829 52.381 0.00 0.00 0.00 4.00
4472 4788 2.171003 GATGGGGAAGACAAAAGGTGG 58.829 52.381 0.00 0.00 0.00 4.61
4473 4789 1.227249 TGGGGAAGACAAAAGGTGGA 58.773 50.000 0.00 0.00 0.00 4.02
4474 4790 1.144913 TGGGGAAGACAAAAGGTGGAG 59.855 52.381 0.00 0.00 0.00 3.86
4475 4791 1.248486 GGGAAGACAAAAGGTGGAGC 58.752 55.000 0.00 0.00 0.00 4.70
4476 4792 0.875059 GGAAGACAAAAGGTGGAGCG 59.125 55.000 0.00 0.00 0.00 5.03
4477 4793 0.875059 GAAGACAAAAGGTGGAGCGG 59.125 55.000 0.00 0.00 0.00 5.52
4478 4794 0.182775 AAGACAAAAGGTGGAGCGGT 59.817 50.000 0.00 0.00 0.00 5.68
4479 4795 0.535102 AGACAAAAGGTGGAGCGGTG 60.535 55.000 0.00 0.00 0.00 4.94
4480 4796 0.818040 GACAAAAGGTGGAGCGGTGT 60.818 55.000 0.00 0.00 0.00 4.16
4481 4797 0.395173 ACAAAAGGTGGAGCGGTGTT 60.395 50.000 0.00 0.00 0.00 3.32
4482 4798 0.744281 CAAAAGGTGGAGCGGTGTTT 59.256 50.000 0.00 0.00 0.00 2.83
4483 4799 1.029681 AAAAGGTGGAGCGGTGTTTC 58.970 50.000 0.00 0.00 0.00 2.78
4484 4800 0.106918 AAAGGTGGAGCGGTGTTTCA 60.107 50.000 0.00 0.00 0.00 2.69
4485 4801 0.110486 AAGGTGGAGCGGTGTTTCAT 59.890 50.000 0.00 0.00 0.00 2.57
4486 4802 0.110486 AGGTGGAGCGGTGTTTCATT 59.890 50.000 0.00 0.00 0.00 2.57
4487 4803 0.958822 GGTGGAGCGGTGTTTCATTT 59.041 50.000 0.00 0.00 0.00 2.32
4488 4804 2.156098 GGTGGAGCGGTGTTTCATTTA 58.844 47.619 0.00 0.00 0.00 1.40
4489 4805 2.095415 GGTGGAGCGGTGTTTCATTTAC 60.095 50.000 0.00 0.00 0.00 2.01
4490 4806 2.095415 GTGGAGCGGTGTTTCATTTACC 60.095 50.000 0.00 0.00 0.00 2.85
4496 4812 2.780993 GGTGTTTCATTTACCGCATCG 58.219 47.619 0.00 0.00 0.00 3.84
4497 4813 2.417239 GGTGTTTCATTTACCGCATCGA 59.583 45.455 0.00 0.00 0.00 3.59
4498 4814 3.120130 GGTGTTTCATTTACCGCATCGAA 60.120 43.478 0.00 0.00 0.00 3.71
4499 4815 4.088648 GTGTTTCATTTACCGCATCGAAG 58.911 43.478 0.00 0.00 0.00 3.79
4500 4816 3.997681 TGTTTCATTTACCGCATCGAAGA 59.002 39.130 0.00 0.00 45.75 2.87
4501 4817 4.142988 TGTTTCATTTACCGCATCGAAGAC 60.143 41.667 0.00 0.00 42.51 3.01
4502 4818 2.190161 TCATTTACCGCATCGAAGACG 58.810 47.619 0.00 0.00 42.51 4.18
4512 4828 2.004445 TCGAAGACGACGGATCTCG 58.996 57.895 0.00 3.04 43.81 4.04
4513 4829 1.011019 CGAAGACGACGGATCTCGG 60.011 63.158 8.95 0.00 44.45 4.63
4514 4830 1.703438 CGAAGACGACGGATCTCGGT 61.703 60.000 8.95 0.00 44.45 4.69
4515 4831 0.248134 GAAGACGACGGATCTCGGTG 60.248 60.000 8.95 3.44 44.45 4.94
4516 4832 1.654954 AAGACGACGGATCTCGGTGG 61.655 60.000 8.95 1.93 44.45 4.61
4517 4833 3.753070 GACGACGGATCTCGGTGGC 62.753 68.421 8.95 0.00 44.45 5.01
4518 4834 3.822192 CGACGGATCTCGGTGGCA 61.822 66.667 8.20 0.00 44.45 4.92
4519 4835 2.815308 GACGGATCTCGGTGGCAT 59.185 61.111 8.20 0.00 44.45 4.40
4520 4836 1.592669 GACGGATCTCGGTGGCATG 60.593 63.158 8.20 0.00 44.45 4.06
4521 4837 2.280389 CGGATCTCGGTGGCATGG 60.280 66.667 0.00 0.00 34.75 3.66
4522 4838 2.592861 GGATCTCGGTGGCATGGC 60.593 66.667 13.29 13.29 0.00 4.40
4523 4839 2.969238 GATCTCGGTGGCATGGCG 60.969 66.667 15.27 0.10 0.00 5.69
4544 4860 4.020617 CAGGGTCTTGGCGGCAGA 62.021 66.667 12.87 9.37 0.00 4.26
4545 4861 3.710722 AGGGTCTTGGCGGCAGAG 61.711 66.667 12.87 12.77 0.00 3.35
4546 4862 4.785453 GGGTCTTGGCGGCAGAGG 62.785 72.222 12.87 7.04 0.00 3.69
4547 4863 4.021925 GGTCTTGGCGGCAGAGGT 62.022 66.667 12.87 0.00 0.00 3.85
4548 4864 2.743928 GTCTTGGCGGCAGAGGTG 60.744 66.667 12.87 1.85 0.00 4.00
4549 4865 3.241530 TCTTGGCGGCAGAGGTGT 61.242 61.111 12.87 0.00 0.00 4.16
4550 4866 3.052082 CTTGGCGGCAGAGGTGTG 61.052 66.667 12.87 0.00 0.00 3.82
4551 4867 3.535629 CTTGGCGGCAGAGGTGTGA 62.536 63.158 12.87 0.00 0.00 3.58
4552 4868 2.809861 CTTGGCGGCAGAGGTGTGAT 62.810 60.000 12.87 0.00 0.00 3.06
4553 4869 2.821366 GGCGGCAGAGGTGTGATG 60.821 66.667 3.07 0.00 0.00 3.07
4554 4870 2.265739 GCGGCAGAGGTGTGATGA 59.734 61.111 0.00 0.00 0.00 2.92
4555 4871 1.153289 GCGGCAGAGGTGTGATGAT 60.153 57.895 0.00 0.00 0.00 2.45
4556 4872 1.434622 GCGGCAGAGGTGTGATGATG 61.435 60.000 0.00 0.00 0.00 3.07
4557 4873 0.812811 CGGCAGAGGTGTGATGATGG 60.813 60.000 0.00 0.00 0.00 3.51
4558 4874 0.543277 GGCAGAGGTGTGATGATGGA 59.457 55.000 0.00 0.00 0.00 3.41
4559 4875 1.661341 GCAGAGGTGTGATGATGGAC 58.339 55.000 0.00 0.00 0.00 4.02
4560 4876 1.931906 CAGAGGTGTGATGATGGACG 58.068 55.000 0.00 0.00 0.00 4.79
4561 4877 0.176680 AGAGGTGTGATGATGGACGC 59.823 55.000 0.00 0.00 0.00 5.19
4562 4878 1.148157 GAGGTGTGATGATGGACGCG 61.148 60.000 3.53 3.53 0.00 6.01
4563 4879 2.703409 GTGTGATGATGGACGCGC 59.297 61.111 5.73 0.00 0.00 6.86
4564 4880 2.100031 GTGTGATGATGGACGCGCA 61.100 57.895 5.73 0.00 0.00 6.09
4565 4881 1.810853 TGTGATGATGGACGCGCAG 60.811 57.895 5.73 2.42 0.00 5.18
4566 4882 2.202919 TGATGATGGACGCGCAGG 60.203 61.111 5.73 0.00 0.00 4.85
4568 4884 3.445518 GATGATGGACGCGCAGGGA 62.446 63.158 5.73 0.00 46.37 4.20
4569 4885 3.451556 ATGATGGACGCGCAGGGAG 62.452 63.158 5.73 0.00 46.37 4.30
4570 4886 4.899239 GATGGACGCGCAGGGAGG 62.899 72.222 5.73 0.00 46.37 4.30
4577 4893 4.643387 GCGCAGGGAGGTGGTGTT 62.643 66.667 0.30 0.00 0.00 3.32
4578 4894 2.669569 CGCAGGGAGGTGGTGTTG 60.670 66.667 0.00 0.00 0.00 3.33
4579 4895 2.515901 GCAGGGAGGTGGTGTTGT 59.484 61.111 0.00 0.00 0.00 3.32
4580 4896 1.152756 GCAGGGAGGTGGTGTTGTT 60.153 57.895 0.00 0.00 0.00 2.83
4581 4897 0.755327 GCAGGGAGGTGGTGTTGTTT 60.755 55.000 0.00 0.00 0.00 2.83
4582 4898 1.032014 CAGGGAGGTGGTGTTGTTTG 58.968 55.000 0.00 0.00 0.00 2.93
4583 4899 0.106217 AGGGAGGTGGTGTTGTTTGG 60.106 55.000 0.00 0.00 0.00 3.28
4584 4900 1.739667 GGAGGTGGTGTTGTTTGGC 59.260 57.895 0.00 0.00 0.00 4.52
4585 4901 1.040339 GGAGGTGGTGTTGTTTGGCA 61.040 55.000 0.00 0.00 0.00 4.92
4586 4902 0.102300 GAGGTGGTGTTGTTTGGCAC 59.898 55.000 0.00 0.00 35.07 5.01
4587 4903 0.324275 AGGTGGTGTTGTTTGGCACT 60.324 50.000 0.00 0.00 36.03 4.40
4588 4904 0.179113 GGTGGTGTTGTTTGGCACTG 60.179 55.000 0.00 0.00 36.03 3.66
4589 4905 0.530288 GTGGTGTTGTTTGGCACTGT 59.470 50.000 0.00 0.00 36.03 3.55
4590 4906 0.529833 TGGTGTTGTTTGGCACTGTG 59.470 50.000 2.76 2.76 36.03 3.66
4591 4907 0.179113 GGTGTTGTTTGGCACTGTGG 60.179 55.000 10.21 0.00 36.03 4.17
4592 4908 0.530288 GTGTTGTTTGGCACTGTGGT 59.470 50.000 10.21 0.00 33.22 4.16
4593 4909 1.746220 GTGTTGTTTGGCACTGTGGTA 59.254 47.619 10.21 0.00 33.22 3.25
4594 4910 2.020720 TGTTGTTTGGCACTGTGGTAG 58.979 47.619 10.21 0.00 0.00 3.18
4595 4911 1.028905 TTGTTTGGCACTGTGGTAGC 58.971 50.000 10.21 0.00 0.00 3.58
4596 4912 1.163420 TGTTTGGCACTGTGGTAGCG 61.163 55.000 10.21 0.00 0.00 4.26
4597 4913 1.147376 TTTGGCACTGTGGTAGCGT 59.853 52.632 10.21 0.00 0.00 5.07
4598 4914 0.882927 TTTGGCACTGTGGTAGCGTC 60.883 55.000 10.21 0.00 0.00 5.19
4599 4915 2.809601 GGCACTGTGGTAGCGTCG 60.810 66.667 10.21 0.00 0.00 5.12
4600 4916 2.257371 GCACTGTGGTAGCGTCGA 59.743 61.111 10.21 0.00 0.00 4.20
4601 4917 2.087009 GCACTGTGGTAGCGTCGAC 61.087 63.158 10.21 5.18 0.00 4.20
4602 4918 1.796355 CACTGTGGTAGCGTCGACG 60.796 63.158 32.57 32.57 43.27 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.795399 ACAAACAAATACAAGTGGTCTCTTG 58.205 36.000 10.18 10.18 46.89 3.02
3 4 7.228706 CCTACAAACAAATACAAGTGGTCTCTT 59.771 37.037 0.00 0.00 0.00 2.85
4 5 6.710744 CCTACAAACAAATACAAGTGGTCTCT 59.289 38.462 0.00 0.00 0.00 3.10
5 6 6.072673 CCCTACAAACAAATACAAGTGGTCTC 60.073 42.308 0.00 0.00 0.00 3.36
22 23 6.271391 TGGTCTCTCTCAAATAACCCTACAAA 59.729 38.462 0.00 0.00 0.00 2.83
23 24 5.783360 TGGTCTCTCTCAAATAACCCTACAA 59.217 40.000 0.00 0.00 0.00 2.41
26 27 8.798975 AATATGGTCTCTCTCAAATAACCCTA 57.201 34.615 0.00 0.00 0.00 3.53
28 29 7.442666 GTGAATATGGTCTCTCTCAAATAACCC 59.557 40.741 0.00 0.00 0.00 4.11
33 34 6.566079 TGGTGAATATGGTCTCTCTCAAAT 57.434 37.500 0.00 0.00 0.00 2.32
41 42 2.880890 GGTGCATGGTGAATATGGTCTC 59.119 50.000 0.00 0.00 0.00 3.36
43 44 2.620115 CAGGTGCATGGTGAATATGGTC 59.380 50.000 0.00 0.00 0.00 4.02
61 62 3.016736 AGGTTTATCAATCCGCAACAGG 58.983 45.455 0.00 0.00 0.00 4.00
64 65 5.803461 GGTTTAAGGTTTATCAATCCGCAAC 59.197 40.000 0.00 0.00 0.00 4.17
68 69 7.328277 TCATGGTTTAAGGTTTATCAATCCG 57.672 36.000 0.00 0.00 0.00 4.18
100 101 9.297586 CAAGCATAGAGTTTTGTAGTATAACGA 57.702 33.333 0.00 0.00 0.00 3.85
103 104 9.378551 CACCAAGCATAGAGTTTTGTAGTATAA 57.621 33.333 0.00 0.00 0.00 0.98
105 106 6.823689 CCACCAAGCATAGAGTTTTGTAGTAT 59.176 38.462 0.00 0.00 0.00 2.12
131 132 7.054124 ACTTTATTCTTGTGAACTCTGTTGGA 58.946 34.615 0.00 0.00 34.71 3.53
142 143 9.431887 GTCCACTACATAACTTTATTCTTGTGA 57.568 33.333 0.00 0.00 0.00 3.58
143 144 9.214957 TGTCCACTACATAACTTTATTCTTGTG 57.785 33.333 0.00 0.00 31.43 3.33
165 166 3.127533 GCGCACAGGGTGATGTCC 61.128 66.667 0.30 0.00 35.23 4.02
193 194 1.002257 CCGCTATGCATATGGGCCA 60.002 57.895 9.61 9.61 0.00 5.36
312 315 9.726438 TTAATTTGAAAGTTTTTGGAAACCTCA 57.274 25.926 0.00 0.78 44.97 3.86
460 473 6.741992 ACATTTCTCAAATTCGTGAGCATA 57.258 33.333 2.73 0.00 44.01 3.14
558 572 9.474313 TCCAGGATTACTTATAAAACTTTGCAT 57.526 29.630 0.00 0.00 0.00 3.96
639 657 8.673626 TGACGAATATTTTCTTGAAATTCAGC 57.326 30.769 0.00 0.00 38.80 4.26
674 693 5.355596 ACATTCTTTTGAATCGGCAAACAA 58.644 33.333 0.00 0.00 46.51 2.83
744 763 8.918116 ACTATGTCATGTCTCTATTAGAAAGCA 58.082 33.333 0.00 0.00 35.47 3.91
1451 1629 5.357257 TCCAACAAGTAGTCAGACAAAGAC 58.643 41.667 2.66 0.00 36.26 3.01
1465 1643 3.264450 CCTCAGAACCCTATCCAACAAGT 59.736 47.826 0.00 0.00 0.00 3.16
1595 1773 5.239306 TCATCATTTTGTTCAGAGGTGACAC 59.761 40.000 0.00 0.00 30.10 3.67
1641 1820 3.420893 TCTAACATTGTGGGCCAAAGAG 58.579 45.455 8.40 1.11 36.44 2.85
1664 1843 1.225983 CCACAGGACAACCACCACA 59.774 57.895 0.00 0.00 38.94 4.17
1665 1844 1.528309 CCCACAGGACAACCACCAC 60.528 63.158 0.00 0.00 38.94 4.16
1666 1845 1.576368 AACCCACAGGACAACCACCA 61.576 55.000 0.00 0.00 38.94 4.17
1667 1846 0.396556 AAACCCACAGGACAACCACC 60.397 55.000 0.00 0.00 38.94 4.61
1668 1847 2.227194 CTAAACCCACAGGACAACCAC 58.773 52.381 0.00 0.00 38.94 4.16
1669 1848 1.847737 ACTAAACCCACAGGACAACCA 59.152 47.619 0.00 0.00 38.94 3.67
1670 1849 2.651382 ACTAAACCCACAGGACAACC 57.349 50.000 0.00 0.00 36.73 3.77
1724 1903 5.982516 CCACACAGTGAGAAGCTATTATCTC 59.017 44.000 7.81 6.25 41.95 2.75
1729 1908 2.304180 AGCCACACAGTGAGAAGCTATT 59.696 45.455 7.81 0.00 35.23 1.73
1795 1974 1.956477 GCCTTATTCCATGGCAACGAT 59.044 47.619 6.96 0.00 44.96 3.73
1796 1975 1.388547 GCCTTATTCCATGGCAACGA 58.611 50.000 6.96 0.00 44.96 3.85
1797 1976 3.944871 GCCTTATTCCATGGCAACG 57.055 52.632 6.96 0.00 44.96 4.10
1807 1986 6.814146 CCCTATCACTATCGAAAGCCTTATTC 59.186 42.308 0.00 0.00 0.00 1.75
1815 1994 6.073548 GCATTTCACCCTATCACTATCGAAAG 60.074 42.308 0.00 0.00 0.00 2.62
1914 2095 3.721087 AACAAGGGTACTGATGGAAGG 57.279 47.619 0.00 0.00 0.00 3.46
1926 2107 4.098914 TCTCAATGCACTTAACAAGGGT 57.901 40.909 0.00 0.00 33.31 4.34
1989 2174 5.118050 CAGTCATGCTAAATTTGCACACTTG 59.882 40.000 14.67 10.57 43.59 3.16
2150 2336 7.693951 CAGGCTAAAAGAAAAACATGTCTATCG 59.306 37.037 0.00 0.00 0.00 2.92
2278 2464 7.004086 AGAGAAACCAACAAAAGGACATGATA 58.996 34.615 0.00 0.00 0.00 2.15
2286 2472 5.072040 ACACAAGAGAAACCAACAAAAGG 57.928 39.130 0.00 0.00 0.00 3.11
2333 2519 9.289782 ACCCATCAAGAGTAGCAAATATTAATC 57.710 33.333 0.00 0.00 0.00 1.75
2334 2520 9.071276 CACCCATCAAGAGTAGCAAATATTAAT 57.929 33.333 0.00 0.00 0.00 1.40
2335 2521 7.013274 GCACCCATCAAGAGTAGCAAATATTAA 59.987 37.037 0.00 0.00 0.00 1.40
2341 2527 2.040278 AGCACCCATCAAGAGTAGCAAA 59.960 45.455 0.00 0.00 0.00 3.68
2363 2549 2.093869 TGGTTATAGTCGTCAACTGGGC 60.094 50.000 0.00 0.00 39.11 5.36
2377 2563 4.345257 GCCTCAGAGATCTTGGTGGTTATA 59.655 45.833 0.00 0.00 0.00 0.98
2497 2684 0.467290 GGAACAGGTGCCAAAGTCCA 60.467 55.000 0.00 0.00 0.00 4.02
2515 2702 4.801891 CCACAGACAAATGTTGAATGAGG 58.198 43.478 0.00 0.00 0.00 3.86
2598 2791 4.307032 ACACCCATCAAGAGTAGCAAAT 57.693 40.909 0.00 0.00 0.00 2.32
2617 2810 1.144691 TGGTCATCAACTGGGGAACA 58.855 50.000 0.00 0.00 0.00 3.18
2736 2929 0.031994 AAACGCCACAGCCAAATGTC 59.968 50.000 0.00 0.00 34.57 3.06
2745 2938 1.873591 AGAACAAGCTAAACGCCACAG 59.126 47.619 0.00 0.00 40.39 3.66
2751 2944 6.862944 TCAAACAAAAGAACAAGCTAAACG 57.137 33.333 0.00 0.00 0.00 3.60
2950 3143 7.807977 TCCCAGTTTTATGATTTGCTATCTC 57.192 36.000 0.00 0.00 0.00 2.75
3029 3222 7.736447 AGTACAGGAGAATCAAACAAAAGAG 57.264 36.000 0.00 0.00 36.25 2.85
3051 3244 9.988815 CTCACATCATAGGCTTATAACTAAAGT 57.011 33.333 0.00 0.00 0.00 2.66
3216 3410 4.378149 CGATATGTGCAATCTGATTCTGGC 60.378 45.833 0.00 2.24 0.00 4.85
3217 3411 4.753610 ACGATATGTGCAATCTGATTCTGG 59.246 41.667 0.00 0.00 0.00 3.86
3220 3414 8.021955 TCATTACGATATGTGCAATCTGATTC 57.978 34.615 0.00 0.00 0.00 2.52
3259 3453 2.134789 AGATCTTGGTGGTCAATGGC 57.865 50.000 0.00 0.00 34.45 4.40
3260 3454 3.424703 ACAAGATCTTGGTGGTCAATGG 58.575 45.455 33.11 9.47 44.45 3.16
3269 3463 4.341806 TGAAATGCACAACAAGATCTTGGT 59.658 37.500 33.11 27.66 44.45 3.67
3270 3464 4.873817 TGAAATGCACAACAAGATCTTGG 58.126 39.130 33.11 21.31 44.45 3.61
3271 3465 7.310664 ACTATGAAATGCACAACAAGATCTTG 58.689 34.615 29.74 29.74 45.58 3.02
3272 3466 7.458409 ACTATGAAATGCACAACAAGATCTT 57.542 32.000 0.88 0.88 0.00 2.40
3273 3467 7.175467 TCAACTATGAAATGCACAACAAGATCT 59.825 33.333 0.00 0.00 30.99 2.75
3274 3468 7.307694 TCAACTATGAAATGCACAACAAGATC 58.692 34.615 0.00 0.00 30.99 2.75
3275 3469 7.218228 TCAACTATGAAATGCACAACAAGAT 57.782 32.000 0.00 0.00 30.99 2.40
3284 3478 5.597594 TGGCCATTATCAACTATGAAATGCA 59.402 36.000 0.00 0.00 39.49 3.96
3293 3487 4.887071 GTGGTCAATGGCCATTATCAACTA 59.113 41.667 30.19 19.25 38.40 2.24
3294 3488 3.701040 GTGGTCAATGGCCATTATCAACT 59.299 43.478 30.19 4.06 38.40 3.16
3295 3489 3.181476 GGTGGTCAATGGCCATTATCAAC 60.181 47.826 30.19 25.03 38.40 3.18
3296 3490 3.030291 GGTGGTCAATGGCCATTATCAA 58.970 45.455 30.19 16.45 38.40 2.57
3298 3492 2.665165 TGGTGGTCAATGGCCATTATC 58.335 47.619 30.19 23.17 38.40 1.75
3299 3493 2.844654 TGGTGGTCAATGGCCATTAT 57.155 45.000 30.19 7.48 38.40 1.28
3331 3525 4.290985 TCCCCAATCAAGAACCTAACATCA 59.709 41.667 0.00 0.00 0.00 3.07
3366 3561 0.526954 GGCATGCGCTCAAATCAAGG 60.527 55.000 12.44 0.00 38.60 3.61
3404 3602 9.421806 CATTTTCCAAATAACATCTAGTTGCAA 57.578 29.630 0.00 0.00 41.50 4.08
3442 3640 5.872070 CAGTTCCTGCCAGTTTAAACAAAAA 59.128 36.000 20.06 2.86 0.00 1.94
3478 3676 2.028020 CGACACCTTAGCCTTCTCCTTT 60.028 50.000 0.00 0.00 0.00 3.11
3533 3731 1.304509 GCAGCCTTCTCAGCCTTGAC 61.305 60.000 0.00 0.00 0.00 3.18
3662 3860 5.191426 ACGACACTCTCAGGCTACTAATAA 58.809 41.667 0.00 0.00 0.00 1.40
3663 3861 4.778579 ACGACACTCTCAGGCTACTAATA 58.221 43.478 0.00 0.00 0.00 0.98
3664 3862 3.622630 ACGACACTCTCAGGCTACTAAT 58.377 45.455 0.00 0.00 0.00 1.73
3716 3914 6.271488 TCCATTTGCTACAAAGATTGGAAG 57.729 37.500 10.10 0.00 34.12 3.46
3776 3974 4.326826 TGGGAGAAAACAGCAACATCTAG 58.673 43.478 0.00 0.00 0.00 2.43
3777 3975 4.365514 TGGGAGAAAACAGCAACATCTA 57.634 40.909 0.00 0.00 0.00 1.98
3783 3981 3.499338 ACATGATGGGAGAAAACAGCAA 58.501 40.909 0.00 0.00 36.52 3.91
3784 3982 3.159213 ACATGATGGGAGAAAACAGCA 57.841 42.857 0.00 0.00 37.41 4.41
3785 3983 4.525912 AAACATGATGGGAGAAAACAGC 57.474 40.909 0.00 0.00 0.00 4.40
3786 3984 6.282930 ACAAAAACATGATGGGAGAAAACAG 58.717 36.000 0.00 0.00 0.00 3.16
3823 4024 3.954904 AGAGCTGGATCTAGAAGCGTAAA 59.045 43.478 10.75 0.00 41.88 2.01
3827 4028 1.952990 TGAGAGCTGGATCTAGAAGCG 59.047 52.381 10.75 0.00 41.88 4.68
3849 4053 2.012948 GCTTGCACGCTTGACTTGC 61.013 57.895 8.12 0.00 43.60 4.01
3868 4072 4.332543 CAGCGGATCAATGTGCTTTAACTA 59.667 41.667 0.00 0.00 34.99 2.24
3898 4103 6.566753 GCCTCTTCTTCAATTTATATCACGCC 60.567 42.308 0.00 0.00 0.00 5.68
3911 4116 4.422073 TCTCAGTTTGCCTCTTCTTCAA 57.578 40.909 0.00 0.00 0.00 2.69
3916 4121 5.352284 TCGATAATCTCAGTTTGCCTCTTC 58.648 41.667 0.00 0.00 0.00 2.87
3943 4148 1.379527 CCTCCGCCATGTTTACTTCC 58.620 55.000 0.00 0.00 0.00 3.46
3963 4168 2.644992 GGAGGTGTTTGGCGCAAG 59.355 61.111 10.83 0.00 43.44 4.01
3998 4218 1.484240 GCTATTGACCAGCACTCCTCT 59.516 52.381 0.00 0.00 38.93 3.69
4006 4226 4.963276 TGTAATGTTGCTATTGACCAGC 57.037 40.909 0.00 0.00 39.56 4.85
4008 4228 5.525745 CGGTATGTAATGTTGCTATTGACCA 59.474 40.000 0.00 0.00 0.00 4.02
4069 4314 2.317530 ATAGGCAGAGAAAACCTCGC 57.682 50.000 0.00 0.00 46.49 5.03
4086 4331 4.649674 AGATCCTCTGTAACCAGCGAAATA 59.350 41.667 0.00 0.00 38.66 1.40
4092 4337 4.434520 GTGTTAGATCCTCTGTAACCAGC 58.565 47.826 0.00 0.00 38.66 4.85
4109 4354 1.552792 TCGCATGATGGTGAGGTGTTA 59.447 47.619 0.00 0.00 0.00 2.41
4136 4381 7.412548 TGTTTCGATTTGGATGTCCAGAAACT 61.413 38.462 27.11 5.47 46.50 2.66
4198 4483 6.679843 TCGCCATCGGTTTAAACTAAAAATT 58.320 32.000 17.50 0.00 36.13 1.82
4253 4569 7.893302 AGTCACATATGAAAAGACCCCAAAATA 59.107 33.333 10.38 0.00 36.31 1.40
4254 4570 6.725834 AGTCACATATGAAAAGACCCCAAAAT 59.274 34.615 10.38 0.00 36.31 1.82
4259 4575 4.843728 TGAGTCACATATGAAAAGACCCC 58.156 43.478 10.38 7.33 36.31 4.95
4260 4576 5.491982 ACTGAGTCACATATGAAAAGACCC 58.508 41.667 10.38 3.74 36.31 4.46
4269 4585 5.349817 GTCAAGTCCAACTGAGTCACATATG 59.650 44.000 0.00 0.00 0.00 1.78
4272 4588 3.389329 AGTCAAGTCCAACTGAGTCACAT 59.611 43.478 0.00 0.00 0.00 3.21
4289 4605 7.517614 TTTTGGCATACATTTACTCAGTCAA 57.482 32.000 0.00 0.00 0.00 3.18
4291 4607 6.523201 CGTTTTTGGCATACATTTACTCAGTC 59.477 38.462 0.00 0.00 0.00 3.51
4326 4642 2.012673 AGTCAACGGTAGCTACGGTAG 58.987 52.381 30.31 17.95 38.56 3.18
4327 4643 2.113860 AGTCAACGGTAGCTACGGTA 57.886 50.000 30.31 17.41 38.56 4.02
4328 4644 1.068055 CAAGTCAACGGTAGCTACGGT 60.068 52.381 26.32 26.32 40.79 4.83
4329 4645 1.625616 CAAGTCAACGGTAGCTACGG 58.374 55.000 25.11 25.11 35.23 4.02
4330 4646 0.989890 GCAAGTCAACGGTAGCTACG 59.010 55.000 17.48 14.53 37.36 3.51
4331 4647 2.365408 AGCAAGTCAACGGTAGCTAC 57.635 50.000 15.88 15.88 0.00 3.58
4332 4648 2.683968 CAAGCAAGTCAACGGTAGCTA 58.316 47.619 0.00 0.00 0.00 3.32
4333 4649 1.512926 CAAGCAAGTCAACGGTAGCT 58.487 50.000 0.00 0.00 0.00 3.32
4334 4650 0.110192 GCAAGCAAGTCAACGGTAGC 60.110 55.000 0.00 0.00 0.00 3.58
4335 4651 0.163788 CGCAAGCAAGTCAACGGTAG 59.836 55.000 0.00 0.00 0.00 3.18
4336 4652 2.230892 CGCAAGCAAGTCAACGGTA 58.769 52.632 0.00 0.00 0.00 4.02
4337 4653 3.022287 CGCAAGCAAGTCAACGGT 58.978 55.556 0.00 0.00 0.00 4.83
4349 4665 1.004560 TTCTCACCCAGAGCGCAAG 60.005 57.895 11.47 0.00 44.35 4.01
4350 4666 1.301716 GTTCTCACCCAGAGCGCAA 60.302 57.895 11.47 0.00 44.35 4.85
4351 4667 2.343758 GTTCTCACCCAGAGCGCA 59.656 61.111 11.47 0.00 44.35 6.09
4352 4668 1.605058 TAGGTTCTCACCCAGAGCGC 61.605 60.000 0.00 0.00 45.63 5.92
4353 4669 0.457851 CTAGGTTCTCACCCAGAGCG 59.542 60.000 0.00 0.00 45.63 5.03
4354 4670 1.478916 GTCTAGGTTCTCACCCAGAGC 59.521 57.143 0.00 0.00 41.07 4.09
4355 4671 2.104170 GGTCTAGGTTCTCACCCAGAG 58.896 57.143 0.00 0.00 41.07 3.35
4356 4672 2.233305 GGTCTAGGTTCTCACCCAGA 57.767 55.000 0.00 0.00 45.63 3.86
4359 4675 1.196012 CTGGGTCTAGGTTCTCACCC 58.804 60.000 7.92 7.92 45.63 4.61
4360 4676 1.939980 ACTGGGTCTAGGTTCTCACC 58.060 55.000 0.00 0.00 44.67 4.02
4361 4677 3.306849 GGAAACTGGGTCTAGGTTCTCAC 60.307 52.174 11.02 0.00 42.63 3.51
4362 4678 2.904434 GGAAACTGGGTCTAGGTTCTCA 59.096 50.000 11.02 0.00 42.63 3.27
4363 4679 2.236644 GGGAAACTGGGTCTAGGTTCTC 59.763 54.545 11.02 4.43 42.63 2.87
4364 4680 2.267192 GGGAAACTGGGTCTAGGTTCT 58.733 52.381 11.02 0.00 42.63 3.01
4365 4681 1.066358 CGGGAAACTGGGTCTAGGTTC 60.066 57.143 3.88 3.88 42.37 3.62
4366 4682 0.981943 CGGGAAACTGGGTCTAGGTT 59.018 55.000 0.00 0.00 0.00 3.50
4367 4683 2.680066 CGGGAAACTGGGTCTAGGT 58.320 57.895 0.00 0.00 0.00 3.08
4391 4707 4.570663 ACTAGCGCCGCCATCGTC 62.571 66.667 4.98 0.00 0.00 4.20
4392 4708 4.873129 CACTAGCGCCGCCATCGT 62.873 66.667 4.98 0.00 0.00 3.73
4393 4709 4.873129 ACACTAGCGCCGCCATCG 62.873 66.667 4.98 0.00 0.00 3.84
4394 4710 2.962253 GACACTAGCGCCGCCATC 60.962 66.667 4.98 0.00 0.00 3.51
4395 4711 4.873129 CGACACTAGCGCCGCCAT 62.873 66.667 4.98 0.00 0.00 4.40
4402 4718 2.054140 GAGGGAGAGCGACACTAGCG 62.054 65.000 0.00 0.00 40.04 4.26
4403 4719 1.032657 TGAGGGAGAGCGACACTAGC 61.033 60.000 0.00 0.00 0.00 3.42
4404 4720 1.336440 CATGAGGGAGAGCGACACTAG 59.664 57.143 0.00 0.00 0.00 2.57
4405 4721 1.393603 CATGAGGGAGAGCGACACTA 58.606 55.000 0.00 0.00 0.00 2.74
4406 4722 1.326213 CCATGAGGGAGAGCGACACT 61.326 60.000 0.00 0.00 40.01 3.55
4407 4723 1.142748 CCATGAGGGAGAGCGACAC 59.857 63.158 0.00 0.00 40.01 3.67
4408 4724 3.621225 CCATGAGGGAGAGCGACA 58.379 61.111 0.00 0.00 40.01 4.35
4418 4734 0.684153 AAAACGATGCCCCCATGAGG 60.684 55.000 0.00 0.00 0.00 3.86
4419 4735 1.135024 CAAAAACGATGCCCCCATGAG 60.135 52.381 0.00 0.00 0.00 2.90
4420 4736 0.894141 CAAAAACGATGCCCCCATGA 59.106 50.000 0.00 0.00 0.00 3.07
4421 4737 0.108233 CCAAAAACGATGCCCCCATG 60.108 55.000 0.00 0.00 0.00 3.66
4422 4738 0.252012 TCCAAAAACGATGCCCCCAT 60.252 50.000 0.00 0.00 0.00 4.00
4423 4739 0.897863 CTCCAAAAACGATGCCCCCA 60.898 55.000 0.00 0.00 0.00 4.96
4424 4740 1.890174 CTCCAAAAACGATGCCCCC 59.110 57.895 0.00 0.00 0.00 5.40
4425 4741 1.215382 GCTCCAAAAACGATGCCCC 59.785 57.895 0.00 0.00 0.00 5.80
4426 4742 0.109132 CTGCTCCAAAAACGATGCCC 60.109 55.000 0.00 0.00 0.00 5.36
4427 4743 0.733909 GCTGCTCCAAAAACGATGCC 60.734 55.000 0.00 0.00 0.00 4.40
4428 4744 0.242017 AGCTGCTCCAAAAACGATGC 59.758 50.000 0.00 0.00 0.00 3.91
4429 4745 1.973138 CAGCTGCTCCAAAAACGATG 58.027 50.000 0.00 0.00 0.00 3.84
4430 4746 0.242017 GCAGCTGCTCCAAAAACGAT 59.758 50.000 31.33 0.00 38.21 3.73
4431 4747 1.654220 GCAGCTGCTCCAAAAACGA 59.346 52.632 31.33 0.00 38.21 3.85
4432 4748 1.372128 GGCAGCTGCTCCAAAAACG 60.372 57.895 35.82 0.00 41.70 3.60
4433 4749 1.372128 CGGCAGCTGCTCCAAAAAC 60.372 57.895 35.82 16.98 41.70 2.43
4434 4750 2.563798 CCGGCAGCTGCTCCAAAAA 61.564 57.895 35.82 0.00 41.70 1.94
4435 4751 2.769652 ATCCGGCAGCTGCTCCAAAA 62.770 55.000 35.82 17.04 41.70 2.44
4436 4752 3.272364 ATCCGGCAGCTGCTCCAAA 62.272 57.895 35.82 18.39 41.70 3.28
4437 4753 3.720601 ATCCGGCAGCTGCTCCAA 61.721 61.111 35.82 20.09 41.70 3.53
4438 4754 4.478371 CATCCGGCAGCTGCTCCA 62.478 66.667 35.82 20.63 41.70 3.86
4443 4759 4.113815 TTCCCCATCCGGCAGCTG 62.114 66.667 10.11 10.11 0.00 4.24
4444 4760 3.801997 CTTCCCCATCCGGCAGCT 61.802 66.667 0.00 0.00 0.00 4.24
4445 4761 3.797353 TCTTCCCCATCCGGCAGC 61.797 66.667 0.00 0.00 0.00 5.25
4446 4762 2.190578 GTCTTCCCCATCCGGCAG 59.809 66.667 0.00 0.00 0.00 4.85
4447 4763 1.784301 TTTGTCTTCCCCATCCGGCA 61.784 55.000 0.00 0.00 0.00 5.69
4448 4764 0.610785 TTTTGTCTTCCCCATCCGGC 60.611 55.000 0.00 0.00 0.00 6.13
4449 4765 1.463674 CTTTTGTCTTCCCCATCCGG 58.536 55.000 0.00 0.00 0.00 5.14
4450 4766 1.271926 ACCTTTTGTCTTCCCCATCCG 60.272 52.381 0.00 0.00 0.00 4.18
4451 4767 2.171003 CACCTTTTGTCTTCCCCATCC 58.829 52.381 0.00 0.00 0.00 3.51
4452 4768 2.171003 CCACCTTTTGTCTTCCCCATC 58.829 52.381 0.00 0.00 0.00 3.51
4453 4769 1.786441 TCCACCTTTTGTCTTCCCCAT 59.214 47.619 0.00 0.00 0.00 4.00
4454 4770 1.144913 CTCCACCTTTTGTCTTCCCCA 59.855 52.381 0.00 0.00 0.00 4.96
4455 4771 1.911057 CTCCACCTTTTGTCTTCCCC 58.089 55.000 0.00 0.00 0.00 4.81
4456 4772 1.248486 GCTCCACCTTTTGTCTTCCC 58.752 55.000 0.00 0.00 0.00 3.97
4457 4773 0.875059 CGCTCCACCTTTTGTCTTCC 59.125 55.000 0.00 0.00 0.00 3.46
4458 4774 0.875059 CCGCTCCACCTTTTGTCTTC 59.125 55.000 0.00 0.00 0.00 2.87
4459 4775 0.182775 ACCGCTCCACCTTTTGTCTT 59.817 50.000 0.00 0.00 0.00 3.01
4460 4776 0.535102 CACCGCTCCACCTTTTGTCT 60.535 55.000 0.00 0.00 0.00 3.41
4461 4777 0.818040 ACACCGCTCCACCTTTTGTC 60.818 55.000 0.00 0.00 0.00 3.18
4462 4778 0.395173 AACACCGCTCCACCTTTTGT 60.395 50.000 0.00 0.00 0.00 2.83
4463 4779 0.744281 AAACACCGCTCCACCTTTTG 59.256 50.000 0.00 0.00 0.00 2.44
4464 4780 1.029681 GAAACACCGCTCCACCTTTT 58.970 50.000 0.00 0.00 0.00 2.27
4465 4781 0.106918 TGAAACACCGCTCCACCTTT 60.107 50.000 0.00 0.00 0.00 3.11
4466 4782 0.110486 ATGAAACACCGCTCCACCTT 59.890 50.000 0.00 0.00 0.00 3.50
4467 4783 0.110486 AATGAAACACCGCTCCACCT 59.890 50.000 0.00 0.00 0.00 4.00
4468 4784 0.958822 AAATGAAACACCGCTCCACC 59.041 50.000 0.00 0.00 0.00 4.61
4469 4785 2.095415 GGTAAATGAAACACCGCTCCAC 60.095 50.000 0.00 0.00 0.00 4.02
4470 4786 2.156098 GGTAAATGAAACACCGCTCCA 58.844 47.619 0.00 0.00 0.00 3.86
4471 4787 2.913777 GGTAAATGAAACACCGCTCC 57.086 50.000 0.00 0.00 0.00 4.70
4476 4792 2.417239 TCGATGCGGTAAATGAAACACC 59.583 45.455 0.00 0.00 0.00 4.16
4477 4793 3.733024 TCGATGCGGTAAATGAAACAC 57.267 42.857 0.00 0.00 0.00 3.32
4478 4794 3.997681 TCTTCGATGCGGTAAATGAAACA 59.002 39.130 0.00 0.00 0.00 2.83
4479 4795 4.331962 GTCTTCGATGCGGTAAATGAAAC 58.668 43.478 0.00 0.00 0.00 2.78
4480 4796 3.061563 CGTCTTCGATGCGGTAAATGAAA 59.938 43.478 0.00 0.00 39.71 2.69
4481 4797 2.601314 CGTCTTCGATGCGGTAAATGAA 59.399 45.455 0.00 0.00 39.71 2.57
4482 4798 2.159352 TCGTCTTCGATGCGGTAAATGA 60.159 45.455 12.54 0.00 41.35 2.57
4483 4799 2.190161 TCGTCTTCGATGCGGTAAATG 58.810 47.619 12.54 0.00 41.35 2.32
4484 4800 2.572191 TCGTCTTCGATGCGGTAAAT 57.428 45.000 12.54 0.00 41.35 1.40
4494 4810 1.426816 CCGAGATCCGTCGTCTTCGA 61.427 60.000 3.97 0.00 38.32 3.71
4495 4811 1.011019 CCGAGATCCGTCGTCTTCG 60.011 63.158 3.97 0.00 38.32 3.79
4496 4812 0.248134 CACCGAGATCCGTCGTCTTC 60.248 60.000 3.97 0.00 38.32 2.87
4497 4813 1.654954 CCACCGAGATCCGTCGTCTT 61.655 60.000 3.97 0.00 38.32 3.01
4498 4814 2.113433 CCACCGAGATCCGTCGTCT 61.113 63.158 3.97 0.00 38.32 4.18
4499 4815 2.408022 CCACCGAGATCCGTCGTC 59.592 66.667 3.97 0.00 38.32 4.20
4500 4816 3.823330 GCCACCGAGATCCGTCGT 61.823 66.667 3.97 0.00 38.32 4.34
4501 4817 3.138930 ATGCCACCGAGATCCGTCG 62.139 63.158 0.00 0.00 39.77 5.12
4502 4818 1.592669 CATGCCACCGAGATCCGTC 60.593 63.158 0.00 0.00 36.31 4.79
4503 4819 2.501128 CATGCCACCGAGATCCGT 59.499 61.111 0.00 0.00 36.31 4.69
4504 4820 2.280389 CCATGCCACCGAGATCCG 60.280 66.667 0.00 0.00 38.18 4.18
4505 4821 2.592861 GCCATGCCACCGAGATCC 60.593 66.667 0.00 0.00 0.00 3.36
4506 4822 2.969238 CGCCATGCCACCGAGATC 60.969 66.667 0.00 0.00 0.00 2.75
4517 4833 4.790962 AGACCCTGCTGCGCCATG 62.791 66.667 4.18 0.00 0.00 3.66
4518 4834 4.039092 AAGACCCTGCTGCGCCAT 62.039 61.111 4.18 0.00 0.00 4.40
4527 4843 3.965539 CTCTGCCGCCAAGACCCTG 62.966 68.421 0.00 0.00 0.00 4.45
4528 4844 3.710722 CTCTGCCGCCAAGACCCT 61.711 66.667 0.00 0.00 0.00 4.34
4529 4845 4.785453 CCTCTGCCGCCAAGACCC 62.785 72.222 0.00 0.00 0.00 4.46
4530 4846 4.021925 ACCTCTGCCGCCAAGACC 62.022 66.667 0.00 0.00 0.00 3.85
4531 4847 2.743928 CACCTCTGCCGCCAAGAC 60.744 66.667 0.00 0.00 0.00 3.01
4532 4848 3.241530 ACACCTCTGCCGCCAAGA 61.242 61.111 0.00 0.00 0.00 3.02
4533 4849 2.809861 ATCACACCTCTGCCGCCAAG 62.810 60.000 0.00 0.00 0.00 3.61
4534 4850 2.894257 ATCACACCTCTGCCGCCAA 61.894 57.895 0.00 0.00 0.00 4.52
4535 4851 3.321648 ATCACACCTCTGCCGCCA 61.322 61.111 0.00 0.00 0.00 5.69
4536 4852 2.599645 ATCATCACACCTCTGCCGCC 62.600 60.000 0.00 0.00 0.00 6.13
4537 4853 1.153289 ATCATCACACCTCTGCCGC 60.153 57.895 0.00 0.00 0.00 6.53
4538 4854 0.812811 CCATCATCACACCTCTGCCG 60.813 60.000 0.00 0.00 0.00 5.69
4539 4855 0.543277 TCCATCATCACACCTCTGCC 59.457 55.000 0.00 0.00 0.00 4.85
4540 4856 1.661341 GTCCATCATCACACCTCTGC 58.339 55.000 0.00 0.00 0.00 4.26
4541 4857 1.931906 CGTCCATCATCACACCTCTG 58.068 55.000 0.00 0.00 0.00 3.35
4542 4858 0.176680 GCGTCCATCATCACACCTCT 59.823 55.000 0.00 0.00 0.00 3.69
4543 4859 1.148157 CGCGTCCATCATCACACCTC 61.148 60.000 0.00 0.00 0.00 3.85
4544 4860 1.153568 CGCGTCCATCATCACACCT 60.154 57.895 0.00 0.00 0.00 4.00
4545 4861 2.813179 GCGCGTCCATCATCACACC 61.813 63.158 8.43 0.00 0.00 4.16
4546 4862 2.028766 CTGCGCGTCCATCATCACAC 62.029 60.000 8.43 0.00 0.00 3.82
4547 4863 1.810853 CTGCGCGTCCATCATCACA 60.811 57.895 8.43 0.00 0.00 3.58
4548 4864 2.528743 CCTGCGCGTCCATCATCAC 61.529 63.158 8.43 0.00 0.00 3.06
4549 4865 2.202919 CCTGCGCGTCCATCATCA 60.203 61.111 8.43 0.00 0.00 3.07
4550 4866 2.969238 CCCTGCGCGTCCATCATC 60.969 66.667 8.43 0.00 0.00 2.92
4551 4867 3.451556 CTCCCTGCGCGTCCATCAT 62.452 63.158 8.43 0.00 0.00 2.45
4552 4868 4.147449 CTCCCTGCGCGTCCATCA 62.147 66.667 8.43 0.00 0.00 3.07
4553 4869 4.899239 CCTCCCTGCGCGTCCATC 62.899 72.222 8.43 0.00 0.00 3.51
4560 4876 4.643387 AACACCACCTCCCTGCGC 62.643 66.667 0.00 0.00 0.00 6.09
4561 4877 2.669569 CAACACCACCTCCCTGCG 60.670 66.667 0.00 0.00 0.00 5.18
4562 4878 0.755327 AAACAACACCACCTCCCTGC 60.755 55.000 0.00 0.00 0.00 4.85
4563 4879 1.032014 CAAACAACACCACCTCCCTG 58.968 55.000 0.00 0.00 0.00 4.45
4564 4880 0.106217 CCAAACAACACCACCTCCCT 60.106 55.000 0.00 0.00 0.00 4.20
4565 4881 1.744320 GCCAAACAACACCACCTCCC 61.744 60.000 0.00 0.00 0.00 4.30
4566 4882 1.040339 TGCCAAACAACACCACCTCC 61.040 55.000 0.00 0.00 0.00 4.30
4567 4883 0.102300 GTGCCAAACAACACCACCTC 59.898 55.000 0.00 0.00 0.00 3.85
4568 4884 0.324275 AGTGCCAAACAACACCACCT 60.324 50.000 0.00 0.00 37.51 4.00
4569 4885 0.179113 CAGTGCCAAACAACACCACC 60.179 55.000 0.00 0.00 37.51 4.61
4570 4886 0.530288 ACAGTGCCAAACAACACCAC 59.470 50.000 0.00 0.00 37.51 4.16
4571 4887 0.529833 CACAGTGCCAAACAACACCA 59.470 50.000 0.00 0.00 37.51 4.17
4572 4888 0.179113 CCACAGTGCCAAACAACACC 60.179 55.000 0.00 0.00 37.51 4.16
4573 4889 0.530288 ACCACAGTGCCAAACAACAC 59.470 50.000 0.00 0.00 37.05 3.32
4574 4890 2.020720 CTACCACAGTGCCAAACAACA 58.979 47.619 0.00 0.00 0.00 3.33
4575 4891 1.269051 GCTACCACAGTGCCAAACAAC 60.269 52.381 0.00 0.00 0.00 3.32
4576 4892 1.028905 GCTACCACAGTGCCAAACAA 58.971 50.000 0.00 0.00 0.00 2.83
4577 4893 1.163420 CGCTACCACAGTGCCAAACA 61.163 55.000 0.00 0.00 0.00 2.83
4578 4894 1.164041 ACGCTACCACAGTGCCAAAC 61.164 55.000 0.00 0.00 38.41 2.93
4579 4895 0.882927 GACGCTACCACAGTGCCAAA 60.883 55.000 0.00 0.00 38.41 3.28
4580 4896 1.301401 GACGCTACCACAGTGCCAA 60.301 57.895 0.00 0.00 38.41 4.52
4581 4897 2.342279 GACGCTACCACAGTGCCA 59.658 61.111 0.00 0.00 38.41 4.92
4582 4898 2.809601 CGACGCTACCACAGTGCC 60.810 66.667 0.00 0.00 38.41 5.01
4583 4899 2.087009 GTCGACGCTACCACAGTGC 61.087 63.158 0.00 0.00 38.41 4.40
4584 4900 1.796355 CGTCGACGCTACCACAGTG 60.796 63.158 26.59 0.00 40.83 3.66
4585 4901 2.559840 CGTCGACGCTACCACAGT 59.440 61.111 26.59 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.