Multiple sequence alignment - TraesCS2B01G243800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G243800 chr2B 100.000 2597 0 0 1 2597 247937921 247935325 0.000000e+00 4796.0
1 TraesCS2B01G243800 chr2B 95.122 41 2 0 2154 2194 363926700 363926740 6.000000e-07 65.8
2 TraesCS2B01G243800 chr2D 92.883 2192 63 33 207 2352 192735575 192737719 0.000000e+00 3097.0
3 TraesCS2B01G243800 chr2D 97.211 251 5 1 2349 2597 192737966 192738216 8.590000e-115 424.0
4 TraesCS2B01G243800 chr2D 95.146 206 10 0 1 206 192735328 192735533 2.490000e-85 326.0
5 TraesCS2B01G243800 chr2A 92.011 1502 64 19 561 2032 205219543 205218068 0.000000e+00 2058.0
6 TraesCS2B01G243800 chr2A 83.412 422 26 27 2196 2596 205218075 205217677 4.110000e-93 351.0
7 TraesCS2B01G243800 chr2A 91.000 100 9 0 2044 2143 78256265 78256364 4.510000e-28 135.0
8 TraesCS2B01G243800 chr6A 88.288 111 13 0 2037 2147 66996586 66996696 1.620000e-27 134.0
9 TraesCS2B01G243800 chr1A 90.196 102 10 0 2044 2145 564367402 564367301 1.620000e-27 134.0
10 TraesCS2B01G243800 chr1A 87.500 104 13 0 2044 2147 394850982 394851085 1.260000e-23 121.0
11 TraesCS2B01G243800 chr5A 88.462 104 12 0 2044 2147 414775822 414775719 2.710000e-25 126.0
12 TraesCS2B01G243800 chr5A 87.500 104 13 0 2044 2147 622779362 622779259 1.260000e-23 121.0
13 TraesCS2B01G243800 chr3A 81.437 167 17 8 2040 2194 557919235 557919399 9.760000e-25 124.0
14 TraesCS2B01G243800 chr1D 87.500 104 13 0 2043 2146 9267365 9267262 1.260000e-23 121.0
15 TraesCS2B01G243800 chr4A 77.011 174 26 7 2043 2203 694027858 694028030 1.280000e-13 87.9
16 TraesCS2B01G243800 chr3B 77.778 162 22 6 2045 2194 104275377 104275536 1.280000e-13 87.9
17 TraesCS2B01G243800 chr5D 93.750 48 2 1 2147 2194 531297602 531297648 1.290000e-08 71.3
18 TraesCS2B01G243800 chr7B 92.683 41 3 0 2161 2201 187674549 187674589 2.790000e-05 60.2
19 TraesCS2B01G243800 chr7A 92.683 41 3 0 2161 2201 74810108 74810148 2.790000e-05 60.2
20 TraesCS2B01G243800 chr7A 100.000 31 0 0 2164 2194 17426290 17426320 1.000000e-04 58.4
21 TraesCS2B01G243800 chr3D 92.683 41 3 0 2154 2194 504358790 504358830 2.790000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G243800 chr2B 247935325 247937921 2596 True 4796.000000 4796 100.0000 1 2597 1 chr2B.!!$R1 2596
1 TraesCS2B01G243800 chr2D 192735328 192738216 2888 False 1282.333333 3097 95.0800 1 2597 3 chr2D.!!$F1 2596
2 TraesCS2B01G243800 chr2A 205217677 205219543 1866 True 1204.500000 2058 87.7115 561 2596 2 chr2A.!!$R1 2035

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
357 408 0.031111 TGGATGGGAGGGAGTACCAG 60.031 60.0 0.00 0.00 43.89 4.00 F
636 691 0.095417 GAGAAACGATGCGGCAGAAC 59.905 55.0 9.25 1.72 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1518 1600 0.036388 TGATCTTGAACCCGCAGTCC 60.036 55.0 0.0 0.0 0.0 3.85 R
2039 2140 1.939980 AGAAACGGAGGGAGTAGCTT 58.060 50.0 0.0 0.0 0.0 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.744795 CTCTAAACCATAGAGCACACCT 57.255 45.455 0.00 0.00 35.24 4.00
35 36 4.373156 AAACCATAGAGCACACCTTTCT 57.627 40.909 0.00 0.00 0.00 2.52
36 37 5.499004 AAACCATAGAGCACACCTTTCTA 57.501 39.130 0.00 0.00 0.00 2.10
85 86 3.004315 CAGCGTCCAACAAACTACCATTT 59.996 43.478 0.00 0.00 0.00 2.32
97 98 3.692690 ACTACCATTTGGGCACGTAAAT 58.307 40.909 0.96 0.00 42.05 1.40
130 131 4.396166 ACTGTATATGCTTGCCTTGTCAAC 59.604 41.667 0.00 0.00 0.00 3.18
149 150 1.073284 ACCACCACTCGCCAATTAGTT 59.927 47.619 0.00 0.00 0.00 2.24
167 168 2.359975 GGGACCGCTCCTTGTTGG 60.360 66.667 0.00 0.00 36.68 3.77
248 298 5.096521 AGGATGGATATGCAATACCTGAGA 58.903 41.667 15.89 0.00 0.00 3.27
328 379 5.202640 GTTGAAGTTGTACTAAAGCAACGG 58.797 41.667 0.00 0.00 46.66 4.44
329 380 3.249080 TGAAGTTGTACTAAAGCAACGGC 59.751 43.478 0.00 0.00 46.66 5.68
336 387 3.282831 ACTAAAGCAACGGCAATCAAC 57.717 42.857 0.00 0.00 44.61 3.18
343 394 2.532235 CAACGGCAATCAACATGGATG 58.468 47.619 0.00 0.00 0.00 3.51
345 396 0.386476 CGGCAATCAACATGGATGGG 59.614 55.000 0.00 0.00 0.00 4.00
357 408 0.031111 TGGATGGGAGGGAGTACCAG 60.031 60.000 0.00 0.00 43.89 4.00
374 425 3.454858 ACCAGATTACCAGTGACATCCT 58.545 45.455 0.00 0.00 0.00 3.24
391 442 8.589338 GTGACATCCTCATAGACCATAGTAAAT 58.411 37.037 0.00 0.00 0.00 1.40
399 450 9.209175 CTCATAGACCATAGTAAATTTAGGTGC 57.791 37.037 10.66 4.54 0.00 5.01
423 474 6.490566 TTTTAGCTAACGAATCCAAGGAAC 57.509 37.500 5.45 0.00 0.00 3.62
427 478 1.519408 AACGAATCCAAGGAACGGTG 58.481 50.000 18.05 1.49 34.36 4.94
433 484 1.826054 CCAAGGAACGGTGTTGCCA 60.826 57.895 0.00 0.00 36.97 4.92
437 488 0.321653 AGGAACGGTGTTGCCATCTC 60.322 55.000 0.00 0.00 36.97 2.75
438 489 1.635663 GGAACGGTGTTGCCATCTCG 61.636 60.000 0.00 0.00 36.97 4.04
563 614 3.053455 GTCAGAGCCGCAGAATATGTAC 58.947 50.000 0.00 0.00 0.00 2.90
605 660 5.942872 AGCTTGCTTTACAACATGTACATC 58.057 37.500 5.07 0.00 31.69 3.06
636 691 0.095417 GAGAAACGATGCGGCAGAAC 59.905 55.000 9.25 1.72 0.00 3.01
661 716 6.986817 CCATACCACGACAGAGAAAAATATCT 59.013 38.462 0.00 0.00 0.00 1.98
662 717 7.495934 CCATACCACGACAGAGAAAAATATCTT 59.504 37.037 0.00 0.00 0.00 2.40
663 718 9.529325 CATACCACGACAGAGAAAAATATCTTA 57.471 33.333 0.00 0.00 0.00 2.10
692 747 2.279582 AACAGGAGAACGTATGCTCG 57.720 50.000 0.00 0.00 31.95 5.03
695 750 1.591863 GGAGAACGTATGCTCGCCC 60.592 63.158 0.00 0.00 31.95 6.13
799 854 3.306166 GGAATCAACATCCAGTACGTTCG 59.694 47.826 0.00 0.00 36.92 3.95
826 884 0.722469 CAGTTTTGCGTGCTAGCGTG 60.722 55.000 10.77 5.91 40.67 5.34
902 960 2.158682 TGGCGCATGTGGACCTATAAAT 60.159 45.455 10.83 0.00 0.00 1.40
905 963 3.390135 CGCATGTGGACCTATAAATCGT 58.610 45.455 0.00 0.00 0.00 3.73
908 966 4.814234 GCATGTGGACCTATAAATCGTCAA 59.186 41.667 0.00 0.00 0.00 3.18
946 1004 1.554042 CGTACACCAACCAGCGTCAC 61.554 60.000 0.00 0.00 0.00 3.67
947 1005 1.300311 TACACCAACCAGCGTCACG 60.300 57.895 0.00 0.00 0.00 4.35
948 1006 1.736365 TACACCAACCAGCGTCACGA 61.736 55.000 0.00 0.00 0.00 4.35
949 1007 1.885388 CACCAACCAGCGTCACGAA 60.885 57.895 0.00 0.00 0.00 3.85
950 1008 1.885850 ACCAACCAGCGTCACGAAC 60.886 57.895 0.00 0.00 0.00 3.95
951 1009 1.594293 CCAACCAGCGTCACGAACT 60.594 57.895 0.00 0.00 0.00 3.01
952 1010 1.564622 CAACCAGCGTCACGAACTG 59.435 57.895 0.00 0.00 0.00 3.16
953 1011 2.244651 AACCAGCGTCACGAACTGC 61.245 57.895 0.00 0.00 0.00 4.40
954 1012 2.661537 CCAGCGTCACGAACTGCA 60.662 61.111 0.00 0.00 32.24 4.41
955 1013 2.546321 CAGCGTCACGAACTGCAC 59.454 61.111 0.00 0.00 32.24 4.57
956 1014 2.106131 AGCGTCACGAACTGCACA 59.894 55.556 0.00 0.00 32.24 4.57
957 1015 2.237751 AGCGTCACGAACTGCACAC 61.238 57.895 0.00 0.00 32.24 3.82
958 1016 2.539503 CGTCACGAACTGCACACG 59.460 61.111 0.00 0.00 0.00 4.49
959 1017 2.228241 CGTCACGAACTGCACACGT 61.228 57.895 0.00 2.89 40.87 4.49
960 1018 0.931202 CGTCACGAACTGCACACGTA 60.931 55.000 0.00 0.00 38.47 3.57
961 1019 0.501435 GTCACGAACTGCACACGTAC 59.499 55.000 7.55 4.56 38.47 3.67
962 1020 0.100861 TCACGAACTGCACACGTACA 59.899 50.000 7.55 0.00 38.47 2.90
965 1023 0.596600 CGAACTGCACACGTACAGGT 60.597 55.000 14.62 9.45 38.25 4.00
1122 1180 1.216122 GCATCATCCTCTTCGTGCTC 58.784 55.000 0.00 0.00 0.00 4.26
1518 1600 2.401766 GGAGCACCACATGAAGGCG 61.402 63.158 0.00 0.00 35.97 5.52
1616 1698 7.575414 TCTAGACTTCTAGTGGATCATTCAC 57.425 40.000 12.11 0.00 44.74 3.18
1629 1711 4.442612 GGATCATTCACAGCTGCTCTTCTA 60.443 45.833 15.27 0.00 0.00 2.10
1633 1715 6.279123 TCATTCACAGCTGCTCTTCTATTAG 58.721 40.000 15.27 0.00 0.00 1.73
1647 1730 7.365206 GCTCTTCTATTAGTTTTCCTTCCCTCT 60.365 40.741 0.00 0.00 0.00 3.69
1706 1789 2.090719 TCATTTGGGTTTGGGGTGGTAA 60.091 45.455 0.00 0.00 0.00 2.85
1779 1865 7.115095 GTGACTACATTTTATAGACTGCGATCC 59.885 40.741 0.00 0.00 0.00 3.36
1827 1913 2.723124 TCAAAGGGCGCTGAAATTTC 57.277 45.000 11.41 11.41 0.00 2.17
1853 1939 6.298441 TCCAGATGTCTACATGTCATGAAA 57.702 37.500 19.77 6.19 36.57 2.69
1926 2012 4.746611 GGAAGGTTTCAAATGTCTTGCAAG 59.253 41.667 20.81 20.81 0.00 4.01
1936 2022 9.985730 TTCAAATGTCTTGCAAGATAAAAAGAT 57.014 25.926 30.65 10.40 37.39 2.40
2056 2157 1.939980 AGAAGCTACTCCCTCCGTTT 58.060 50.000 0.00 0.00 0.00 3.60
2057 2158 1.826096 AGAAGCTACTCCCTCCGTTTC 59.174 52.381 0.00 0.00 0.00 2.78
2071 2172 6.439692 TCCCTCCGTTTCTAAATAGAAGTCTT 59.560 38.462 3.34 0.00 42.66 3.01
2072 2173 7.038516 TCCCTCCGTTTCTAAATAGAAGTCTTT 60.039 37.037 3.34 0.00 42.66 2.52
2073 2174 7.278203 CCCTCCGTTTCTAAATAGAAGTCTTTC 59.722 40.741 3.34 0.00 42.66 2.62
2074 2175 8.035984 CCTCCGTTTCTAAATAGAAGTCTTTCT 58.964 37.037 3.34 0.00 45.45 2.52
2075 2176 8.983307 TCCGTTTCTAAATAGAAGTCTTTCTC 57.017 34.615 3.34 0.00 42.60 2.87
2076 2177 7.754027 TCCGTTTCTAAATAGAAGTCTTTCTCG 59.246 37.037 3.34 0.00 42.60 4.04
2085 2186 9.712305 AAATAGAAGTCTTTCTCGAGATTTCAA 57.288 29.630 17.44 6.53 41.92 2.69
2135 2236 5.918608 ACATGGTTTAGAGCGTAGATTCAT 58.081 37.500 0.00 0.00 0.00 2.57
2150 2264 7.910162 GCGTAGATTCATTCATTTTGCTCTTAA 59.090 33.333 0.00 0.00 0.00 1.85
2237 2351 3.730761 GGCACGCTGCTGGTTCTG 61.731 66.667 9.31 0.00 44.28 3.02
2425 2799 3.785486 CAATCCAGTTGTATCTCTCGCA 58.215 45.455 0.00 0.00 33.01 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 8.635765 TCTTTTGAAATATAGAAAGGTGTGCT 57.364 30.769 0.00 0.00 31.69 4.40
36 37 9.558396 TTTTCACTGGCAATTCTTTTGAAATAT 57.442 25.926 0.00 0.00 42.31 1.28
85 86 2.240160 ACCCTGATAATTTACGTGCCCA 59.760 45.455 0.00 0.00 0.00 5.36
97 98 6.464222 GCAAGCATATACAGTACCCTGATAA 58.536 40.000 0.00 0.00 41.50 1.75
130 131 1.468520 CAACTAATTGGCGAGTGGTGG 59.531 52.381 0.00 0.00 31.63 4.61
149 150 2.429930 CAACAAGGAGCGGTCCCA 59.570 61.111 29.33 0.00 45.26 4.37
286 337 6.121613 TCAACCATTTTCGTACGAGTTTTT 57.878 33.333 18.64 5.69 0.00 1.94
287 338 5.738118 TCAACCATTTTCGTACGAGTTTT 57.262 34.783 18.64 4.66 0.00 2.43
294 345 6.951643 AGTACAACTTCAACCATTTTCGTAC 58.048 36.000 0.00 0.00 0.00 3.67
328 379 1.684983 CCTCCCATCCATGTTGATTGC 59.315 52.381 0.00 0.00 0.00 3.56
329 380 2.091720 TCCCTCCCATCCATGTTGATTG 60.092 50.000 0.00 0.00 0.00 2.67
336 387 1.059913 GGTACTCCCTCCCATCCATG 58.940 60.000 0.00 0.00 0.00 3.66
343 394 2.327373 GGTAATCTGGTACTCCCTCCC 58.673 57.143 0.00 0.00 0.00 4.30
345 396 3.385111 CACTGGTAATCTGGTACTCCCTC 59.615 52.174 0.00 0.00 0.00 4.30
357 408 6.451393 GTCTATGAGGATGTCACTGGTAATC 58.549 44.000 0.00 0.00 38.28 1.75
374 425 8.934697 AGCACCTAAATTTACTATGGTCTATGA 58.065 33.333 4.34 0.00 0.00 2.15
391 442 6.093082 GGATTCGTTAGCTAAAAGCACCTAAA 59.907 38.462 7.99 0.00 45.56 1.85
399 450 6.543736 GTTCCTTGGATTCGTTAGCTAAAAG 58.456 40.000 7.99 6.32 0.00 2.27
427 478 2.109126 GCAGACCCGAGATGGCAAC 61.109 63.158 0.00 0.00 35.87 4.17
433 484 0.254178 AAATGCTGCAGACCCGAGAT 59.746 50.000 20.43 0.00 0.00 2.75
437 488 2.409870 GGGAAATGCTGCAGACCCG 61.410 63.158 20.43 0.00 0.00 5.28
438 489 0.613012 AAGGGAAATGCTGCAGACCC 60.613 55.000 20.43 24.26 37.79 4.46
512 563 6.661304 ATTCTTGAATTCTTTGCTTGAGGT 57.339 33.333 7.05 0.00 0.00 3.85
545 596 4.145807 AGTAGTACATATTCTGCGGCTCT 58.854 43.478 2.52 0.00 0.00 4.09
563 614 3.010420 GCTCCCTTGCCTGTAAAAGTAG 58.990 50.000 0.00 0.00 0.00 2.57
636 691 6.986817 AGATATTTTTCTCTGTCGTGGTATGG 59.013 38.462 0.00 0.00 0.00 2.74
661 716 7.556733 ACGTTCTCCTGTTTGTTTACAATAA 57.443 32.000 0.00 0.00 35.55 1.40
662 717 8.714179 CATACGTTCTCCTGTTTGTTTACAATA 58.286 33.333 0.00 0.00 35.55 1.90
663 718 7.581476 CATACGTTCTCCTGTTTGTTTACAAT 58.419 34.615 0.00 0.00 35.55 2.71
664 719 6.512091 GCATACGTTCTCCTGTTTGTTTACAA 60.512 38.462 0.00 0.00 0.00 2.41
665 720 5.049954 GCATACGTTCTCCTGTTTGTTTACA 60.050 40.000 0.00 0.00 0.00 2.41
678 733 0.249489 ATGGGCGAGCATACGTTCTC 60.249 55.000 0.00 0.00 35.59 2.87
692 747 1.017387 CTCTGTTTAAGCGGATGGGC 58.983 55.000 0.88 0.00 0.00 5.36
695 750 1.590238 CGAGCTCTGTTTAAGCGGATG 59.410 52.381 12.85 0.00 44.59 3.51
734 789 2.149578 CTGGACTGCTGGAAAGTGAAG 58.850 52.381 0.00 0.00 0.00 3.02
799 854 1.780860 GCACGCAAAACTGTTGATGAC 59.219 47.619 9.89 2.51 0.00 3.06
902 960 0.436913 CGTATGCTTGCGTTTGACGA 59.563 50.000 4.46 0.00 46.05 4.20
905 963 0.801872 ATGCGTATGCTTGCGTTTGA 59.198 45.000 8.69 0.00 43.34 2.69
908 966 0.096976 GTGATGCGTATGCTTGCGTT 59.903 50.000 8.69 0.37 43.34 4.84
946 1004 0.596600 ACCTGTACGTGTGCAGTTCG 60.597 55.000 15.38 4.75 40.94 3.95
947 1005 2.056577 GTACCTGTACGTGTGCAGTTC 58.943 52.381 15.38 3.83 40.94 3.01
948 1006 1.409790 TGTACCTGTACGTGTGCAGTT 59.590 47.619 15.38 5.49 40.94 3.16
949 1007 1.000607 CTGTACCTGTACGTGTGCAGT 60.001 52.381 18.34 7.57 40.94 4.40
950 1008 1.698165 CTGTACCTGTACGTGTGCAG 58.302 55.000 14.86 14.86 41.97 4.41
951 1009 0.319211 GCTGTACCTGTACGTGTGCA 60.319 55.000 0.00 0.00 38.85 4.57
952 1010 1.342082 CGCTGTACCTGTACGTGTGC 61.342 60.000 0.00 0.00 38.85 4.57
953 1011 1.342082 GCGCTGTACCTGTACGTGTG 61.342 60.000 0.00 6.30 38.85 3.82
954 1012 1.080974 GCGCTGTACCTGTACGTGT 60.081 57.895 0.00 0.00 38.85 4.49
955 1013 1.804326 GGCGCTGTACCTGTACGTG 60.804 63.158 7.64 5.93 38.85 4.49
956 1014 2.570181 GGCGCTGTACCTGTACGT 59.430 61.111 7.64 0.00 38.85 3.57
957 1015 2.578713 CGGCGCTGTACCTGTACG 60.579 66.667 8.45 0.00 38.85 3.67
958 1016 2.202703 CCGGCGCTGTACCTGTAC 60.203 66.667 16.49 0.45 36.63 2.90
959 1017 4.137872 GCCGGCGCTGTACCTGTA 62.138 66.667 12.58 0.00 0.00 2.74
986 1044 2.279717 GCATGGCTGCTCGATCGA 60.280 61.111 18.32 18.32 45.32 3.59
1455 1537 0.759436 ACCTCACCGTGGAGTTGAGT 60.759 55.000 0.00 0.00 32.91 3.41
1518 1600 0.036388 TGATCTTGAACCCGCAGTCC 60.036 55.000 0.00 0.00 0.00 3.85
1616 1698 6.112058 AGGAAAACTAATAGAAGAGCAGCTG 58.888 40.000 10.11 10.11 0.00 4.24
1629 1711 9.997172 ATAAATCAAGAGGGAAGGAAAACTAAT 57.003 29.630 0.00 0.00 0.00 1.73
1633 1715 8.807118 AGAAATAAATCAAGAGGGAAGGAAAAC 58.193 33.333 0.00 0.00 0.00 2.43
1706 1789 9.439500 CATGAATTAAAACAAAGGAATCACCAT 57.561 29.630 0.00 0.00 42.04 3.55
1779 1865 8.975410 TCACATCATTCTTTTTGCATTAGAAG 57.025 30.769 10.27 3.27 31.98 2.85
1827 1913 4.110036 TGACATGTAGACATCTGGAACG 57.890 45.455 0.00 0.00 33.61 3.95
2039 2140 1.939980 AGAAACGGAGGGAGTAGCTT 58.060 50.000 0.00 0.00 0.00 3.74
2075 2176 9.452065 CCGTATATAGTCCATATTGAAATCTCG 57.548 37.037 0.00 0.00 31.96 4.04
2100 2201 6.702282 GCTCTAAACCATGTCTACTTACATCC 59.298 42.308 0.00 0.00 38.01 3.51
2165 2279 6.980397 TCCGTCCGTTCCTAAATATAAGTTTC 59.020 38.462 0.00 0.00 0.00 2.78
2291 2405 4.671508 CGGCTGCATGACTTTCGAAAAATA 60.672 41.667 12.41 1.25 0.00 1.40
2463 2837 8.034215 CAGTCAGTCCTGATCATTCTTATATCC 58.966 40.741 0.00 0.00 42.18 2.59
2492 2866 5.942872 GGTATTTGACCTCTGTTTCATGTG 58.057 41.667 0.00 0.00 45.89 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.