>input_sequence_74640
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-----------------ATGCCGCGGAACTACCGCCTGCCGTCGTACCACCGGCAGAGCCCGGCGATCCGGTGCCTCAAC
TTCCTCTGCGCGGTGCTGCTCACGCTCGTCCTCATCGCCGGCATCATCCTCTTCGTGCTCTGGCTCAGCCTCCGCCCGCA
CCGCCCCAAGTTCACGCTCACCGACTTCAGCATCCCCAACGTCAACCGCCAGTCCGGCGCCGCCAACCTGCCCGTCAAGT
TCGCCGTCAACGAGCACAACCCCAACCAGAAGATCGGCATCCACTTCGAGG------------CCGT------------C
TACTACGACGACGAGCTCATCGCGTCCGGCCCCGTCATGTACCCCTTCTACCAGCCGCCCAAGGGCGACACGCTAGTGCA
GGGCGAGCTCGCCGCCTCCGGCCCGACGCCGACCGACCCCGCGTGGCAGCGCTTCGCCAGCGAGGTGGGCGCCGGCAGCG
TGGGGCTGCGCCTGGTACTCAACTCCACGGTGAGGTTCCAGGTGAAGGTGTGGGACACCAAGGAGCACCACATGAAGGCG
GACTGCGGGTTCAAGATCAGCGGGGACGGCAGCCTCCACCAGGAGGACAGGAACACGCCCTGCACGCTCTACTTCTAG--
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>chr2B_1_TraesCS2B01G243800
TCTTGAGAAGCTCTAAACCATAGAGCACACCTTTCTATATTTCAAAAGAATTGCCAGTGAAAACAGCGTCCAACAAACTA
CCATTTGGGCACGTAAATTATCAGGGTACTGTATATGCTTGCCTTGTCAACCACCACTCGCCAATTAGTTGGGACCGCTC
CTTGTTGGACTGGCGCATCTCACCATGGTCTTGCTTCCTTGGGAAG----------------------------------
-------TCGTAGTGCCAGGTTCACGAGGAT--------GGATATGCAATACCTGAGATATTTTCTTTAGAAAG-ATATA
CTACATATACAAAAAAAAAAACTCGTACGAAAATGGTTGAAGTTGTACTAAAGCAACGGCAATCAACATGGATGGGAGGG
AGTACCAGATTACCAGTGACATCCTCATAGACCATAGTAAATTTAGGTGCTTTTAGCTAACGAATCCAAGGAACGGTGTT
GCCATCTCGGGTCTGCAGCATTTCCCTTTGCGTCTGCCCGAGGGCGAAGCTTCGGCAACTGTTCTTCCCATATCCGCAGG
AAACCTCAAGCAAAGAATTCAAGAATAAGTTAGTCAGAGCCGCAGAATATGTACTA----CTTTTACAGGCAAGGGAGCT
TGCTTTACAACATGTACATCATACGTTTACAGAGAAACGATGCGGCAGAACCATACCACGACAGAGAAAAATATCTTATT
GTAAACAAACAGGAGAACGTATGCTCGCCCATCCGCTTAAACAGAGCTCGCCCTTTCGAGTTATTCGGCTTCACTTTCCA
GCAGTCCAGCTCTGTCAAAGCCAGCCTCACGGGAATCAACATCCAGTACGTTCG---TCATCAACAGTTTTGCGTGCTAG
CGTGTGCCATCTTTGGCGCACGGCAAGAATATTACTGCCTTGCACACCGTGGCATGCATGGCGCATGTGGACCTATAAAT
CGTCAAACGCAAGCATACGCATCACGTACACCAACCAGCGTCACGAACTGCACACGTACAGGTACAGCGCCGGCGCCGGT
CGATCGATCGAGCAGCCATGCCGCGGAACTACCGCCTGCCGTCGTACCACCGGCAGAGCCCGGCGATCCGGTGCCTCAAC
TTCCTCTGCGCGGTGCTGCTCACGCTCGTCCTCATCGCCGGCATCATCCTCTTCGTGCTCTGGCTCAGCCTCCGCCCGCA
CCGCCCCAAGTTCACGCTCACCGACTTCAGCATCCCCAACGTCAACCGCCAGTCCGGCGCCGCCAACCTGCCCGTCAAGT
TCGCCGTCAACGAGCACAACCCCAACCAGAAGATCGGCATCCACTTCGAGG------------CCGT------------C
TACTACGACGACGAGCTCATCGCGTCCGGCCCCGTCATGTACCCCTTCTACCAGCCGCCCAAGGGCGACACGCTAGTGCA
GGGCGAGCTCGCCGCCTCCGGCCCGACGCCGACCGACCCCGCGTGGCAGCGCTTCGCCAGCGAGGTGGGCGCCGGCAGCG
TGGGGCTGCGCCTGGTACTCAACTCCACGGTGAGGTTCCAGGTGAAGGTGTGGGACACCAAGGAGCACCACATGAAGGCG
GACTGCGGGTTCAAGATCAGCGGGGACGGCAGCCTCCACCAGGAGGACAGGAACACGCCCTGCACGCTCTACTTCTAGAC
TTCTAGTGGATCATTCACAGCTGCTCTTCTATTAGTTTTCC-TTCCCTCTTGATTTATTTCTCTTTCTTCTTGAACATAA
CTGCTTGTCATTTGGGTTTGGGGTGGTAATGGTGATTCCTTTGTTTTAATTCATGTGCTTGACGTACATGTATTGGTGAC
TA---CATTTTATAGACTGCGATCCTTCTAATGCAAAAAGAATGATGTGAGCATCAAAGGGCGCTGAAATTTCGTTCCAG
ATGTCTACATGTCATGAAATTTGTGATCATTGTAAATTTGTAATTAAGTGTGAATGCATGTGAGGATCGGAAGGTTTCAA
ATGTCTTGCAAGATAAAAAGATAACA----------TATTTAACAATGCAACATCTGATT-----AAAAACATAAAAGAA
GACAACAAATTTAACAGCTGGCGATCCAATGCAAAAACATACGAAATATAGTAAGATAGAAGCTACTCCCTCCGTTTCTA
AATAGAAGTCTTTCTCGAGATTTCAATATGGACTATATACGGATGTAAGTAGACATGGTTTAGAGCGTAGATTCATTCAT
TTTGCT-------------CTTAATCAAATCTCTAAAAGAAACTTATATTTAGGAACGGACGGAGTAGAATATAGTTAAC
CATGGTCTGAAAGGGCACGCTGCTGGTTCTGTTTTAGTGCAAGCATCTATTTATATATATATATGCTTAACCTTTCACCA
TATGTATTTTTCGAAAGTCA--------TGCAGCCGTATCTCTCGTTTCTTCTAACTTCGTTAGAGCAT-----------
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-------------------------------------------------------------------------------C
TAATTGTGCAAATACCGATGCTTTAC--CTCTTAACCAATTTGTTTTTTCGGAGATGCAATCCAGTTGTATCTCTCGCAT
TTACACAGAACATCAAACAAATAATCACATGATTAAGGATATAAGAATGATCAGGACTGACTGTCCACATGAAACAGAGG
TCAAATACCAATACAGCATCTACTGATAAGAACACCAATGCTTACGTGTTAACACTAACCAATCATA--AGATATTAAAA
GATCTATAGGCA
>chr2D_1
TCTTCAGAAGCTCTAAACCATAGGGCACACCCTTCCCTATTTCAAAAGAATTGCCAGTGAAAACAGCGTCCAACAAACTA
CCATTAGGGCACGTAAACTATCAGGGTACTGTATATGCTTGCCTTGTCAATCACCACTCGCCAATTAGTCGGGACCGCTC
CTTGTTGAACTGGCGCATCTCACCATGGTCTTGCTTCCTTGGGAAGATAAGGGCAGCCTTGTTTACGGGCAAAAGCGAAG
ACGAATTTCGTAGTGCCAGGTTCACGAGGATACCTTTCTGGATATGCAATACCTGAGGTATTTTCTTTAGAAAGGATATA
CTACAGATACAAAAAA--AAACTCATACGAAAATGGTTGAAGTTGTACTAAAGCAACGATAATCAATATGGATCGAAGGG
AGTACCAAATTACCAGTGACATCCCCATAGACCATAGTAAACTTAGGTGGTTTTAGCTAACGAATCCAAGGAATGGTTTT
GCCGTCTGTGGTCTGCAGCATTTCCCTTTGCGTCTGCCCGAGGGCGAAGCTTCGGCAACTGTTCTTCCCATATCCGCAGG
AATCCTCAAGCAAAGAATTCAAGAATAAGTTAGTCGGAGCCGCAGAATATGTAGTACTACCTTTTACAGGCAAGGGAACT
TGCTTTACAACATGTACATGATACGTTTACAGAGAAACGATGCGGCAGAATCATACCACGACAGAGAAAAACATCC----
GTAAACAAACAGAAGAACGTATACTCACCAATCCGCTTAAACAGAGCTCGCCCTTTCGAGTTCTTCGGTTTCACTTTCCA
GCAGTCCAGCTCTGTCAAAGCCAGCCTCATGGGAATCAACATCCAGTACGCCCATCTTCATCAACAGTTTTGCGTGCTAG
CGTCTGCCATCTTTGGCGCACGGCAAGAATATTACTGCCTTGCACACCGTGGCATGCATGGCGCATGTGGACCTATAAAA
CGCCACACGCAAGCATACGCATCACGTACACCAACCAGCGTCA-----------------GGAACAGCGCCGGCG-----
---CCGCTCGACCAGCCATGCCGCGGAACTATCGCCTGCCGTCGTACCACCGGCAGAGCCCGGCGATCCGGTGCCTCAAC
TTCCTCTGCGCGGTGCTGCTCACGCTCGTCCTCATCGCCGGCATCATCCTCTTCGTGCTGTGGCTCAGCCTCCGCCCGCA
CCGCCCCAAGTTCACGCTCACCGACTTCAGCATCCCCAACGTCAACCGCCAGTCCGGCGCCGCCAACCTGCCCGTCAAGT
TCGCCGTCAACGAGCACAACCCCAACCAGAAGATCGGCATCCACTTCGAGGCCGTCTACGGCTCCGT------------C
TACTACGACGACGAGCTCATCGCGTCCGGCCCCGTCATGTACCCCTTCTACCAGCCGCCCAAGGGCGACACGCTGGTGCA
GGGCGAGCTCGCCGCCTCCGGCCCGACGCCGACCGACCCCGCGTGGCAGCGCTTCGCCAGCGAGGTGGGCGCCGGCAGCG
TCGGGCTGCGCCTCGTGCTCAACTCCACGGTGAGGTTCCAGGTGAAGGTGTGGGACACCAAGGAGCACCACATGAAGGCC
GACTGCGGGTTCAAGATCAGCGGGGACGGCAGCCTCCACCAGGAGGACAGGAACACGCCCTGCACGCTCTACTTCTAGAC
TTCTAGTGGATCATTCA-AGCTGCTCTTCTCTTATTTTTCC-TTCCCTC-TGATTTATTTCTCTTTCTTCTTGAACATAA
CTGCTTGTCATTTGGGTTTGGGGTGGTATTGGTGATTCCTTTGTTTTAATTCATGTGCTTGACGTACATGTATTGGTGAC
TA---CATTTTATAGACTGCGATCTTTCTAATGCAAAAAGAATGATGTGAGCATCAAAGGGCGCTGAAATTTGGTTCCAG
ATGTCTACATGTCATGAACTTTGTGATCATTGTAAATTTGTAATTAAGTGTGAATGCATGTGAGGATCGGAAGGTTTCAA
ATGTCTTGCAAAATAAAAAGACAACA----------TATTTAATAATTCAACATCTGATGAAATGAAAAACATAAAAGAA
GACAACAAATTTAACAGCTGGCGATCCAATGCAAAAACATACGAAATATAGTAAGATAGCAGCTACTCCCTCCGTTCTTA
AATAGAAGTCT------AGATTTCACTATGGACTATATACTGATGTAAGTAGACATGGTTTAGAGCGTAGATTCACTCAT
TTTGCTTCGTATATAGTCTCTTACTGAAATCTCTAAAA-AAACTTATATTTAGGAACGGACGGAGTAGAATATAATTAAC
CATGGTCTGAAAGGGCACGCTGCTGGTTCTATTTTAGTGCAAGCATCTATTTATAC--ATATATGCTTAACCTTTCACCA
G-----TTTTTCGAAAGTCA--------TGCAGCCGTATCTCTCGTTTCTTCTAACTTCGTTAGAGCATCTAAGGGCATT
TACAATGCAGAGCGCTAAGGCGGGCGCTAGGGTCAGGATCCCGGTCGTTTTGCTTAGTTCCCGTTCAAATCTGGGAATTC
GGCGGGCGCTAACCCTGTTTCTCGTTCTAATTTTCTGAGTATAGCGCTGGTACACAGCTCTCAGCGTTGCAAGCAGAGTC
GCTTAGCCAGGCGCTAGGACCAGAATAATATTTTATTTCTAATCAAGCGCCTAATTAGGCGCCTCCCATTGGACATGCCC
TAATTGTGCAAATACCGATGCTTTAC--CTCTTAACCAATTTGTTTTTTCGGAGATGCAATCCAGTTGTATCTCTCGCTT
TTACACAGAACATCAAACAAATAATCACATGATTAACGATATAAGAATGATCAGGACTAACTGTCTACATGAAACAGAGG
TCAAATACCAATACAGCATCTACTGATAAGAACACAAATGCTTACGTGTTAACACTAACCAATCATATAAGATATTAAAA
GATCTATAGGCA
>chr2A_561
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-----------------------------------------------------GTACTACCTTTTACAGGCAAGGGAGCT
TGCTTTACAACATGTACATGATACGTTTACAGAGAAACGATGCGGGAGAATCATACCACGACAGAGAAAAATATCC----
GTAAACAAACAGAAGAACGTATGCTCACCAATCCGCTTAA-CAGAGCTCGCCCTTTCGAGTTATTCGGTTTCACTTTCCA
GCAGCCCAGCTCTGTCAGAGCCAGCCTCACGGGAATCAACATCCGGTACGTTCATCCTCATCAACAGTTTTGCGTGCTAG
CGTCTGCCATCTTTGGCGCACGGCAAGAATATTACTGCCTTGCACACCGTGGCATGCATGGCGCATGTGGACCTATAAAA
CGCCACACGCAAGCATACGCATCACGTACACCAACCAGCGTCA-----------------GGAACAGCGCCGGCGCCGCT
CGACCGATCGACCAGCCATGCCGCGGAACTACCGCCTGCCGTCGTACCACCGGCAGAGCCCGGCGATCCGGTGCCTCAAC
TTCCTCTGCGCGGTGCTGCTCACGCTCGTCCTCATCGCCGGCATCATCCTCTTCGTGCTGTGGCTCAGCCTCCGCCCGCA
CCGCCCCAAGTTCACGCTCACCGACTTCAGCATCCCCAACGTGAACCGCCAGTCGGGCGCCGCCAACCTGCCCGTCAAGT
TGGCCGTCAACGAGCACAACCCCAACCAGAAGATCGGCATCCACTTCGAGG------------CCGTCTACGGCTCCGTC
TACTACGACGACGAGCTCATCGCGTCGGGCCCCGTCATGTACCCCTTCTACCAGCCGCCCAAGGGCGACACGCTGGTGCA
GGGCGAGCTGGCCGCCTCCGGCCCGACGCCCACCGACCCCGCGTGGCAGCGCTTCGCCAGCGAGGTGGGCGCCGGCAGCG
TGGGGCTGCGCCTGGTGCTCAACTCCACGGTGAGGTTCCAGGTGAAGCTGTGGGACACCAAGGAGCACCACATGAAGGCC
GACTGCGGGTTCAAGATCAGCGGGGACGGCAGCCTCCACCAGGAGGACAGGAACACGCAGTGCACGCTCTACTTCTAGAA
TTCTAGTGGATCATTCA-AGCTGCTCTTCTCTTATTTTTCCCTTCCCTC-TGAATTACTTCTCTTTCTTCTTGAACATAA
CTGCTTGTCATTTGGGTTTGGGGTGGTATTGGTAATTCCTTTG-TTTTATTCATGTGCTTGACGTACATGTATTGGTTAC
TAGTACATTTTATAGACTGCAATCTTTCTAATGCAAACAGAATGACGTGAGCATCAAAGGGCGCTGAAATTTGGTTCCAG
ATGTCTACATGTCATGAACTTTGTGATCATTGTAAATTTGTAATGAAGCGTGAATGCATGTGAGAATCGAAAGGTTCCAA
ATGTCCTGCAAAATAAAAAGAAGACAAATCATACTGTATTTAACAATGGAATATCTGATG-----AAAAACATAAAAGAC
GACGACATATTTAACAACTAACTATCCAATGCAAAACATACGA-------------------------------------
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--------------------------------------------------------------------AATATAGTTAAC
CATGGTCTGAAAGGGCACGATCTTT----TATTTTAGTGCAAGCATCTATTTATGC----ATATGCTTAACCTTTCACCA
TATGCACTTTTCAAACAAGCCGTGCAGGTGCAGCCGTACCTCTTGTTTCTTCTAACTTTGTGCAAAGCATCTAACTATAC
GGATAGTCG-----------------------------------------------------------------------
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----------AATACCGATGCTCTAACTCTCTTAACCAATTTGTTTTTTCGGAGATGCAGTCCAGTTGTTTCTCTCGCTT
AAACACAGCATATCAAACCAATAATCACGT-------GATATAAGAATGATCAGGACTGACTGTCTACA------AGAGG
TCAAATATCAATACAACATCTACTGATAAGAACACCAATGCTTACGTGTTA-CACTAACCGATCATATAAGATATTAAAA
GATCATAGGC--
>SNPs
----S------------------S-------S---SS-------------------------------------------
-----S-----------S--------------------------------S------------------S----------
-------S------------------------------------------------------------------------
---------------------------------------------------------S----------------------
-----S----------SS------S---------------------------------SS------S------S-S----
-------S----------------S----------------S-------S-----------------------S---S--
---S---SS-----------------------------------------------------------------------
--S--------------------------------S-----------------S--------------------------
-------------------S------------------------------S------------------------SSSSS
------------S-------------S--S--------------------------------------S-----------
-----------------------------------------------------S--------------------------
---S---------------------------------------------------------------------------S
--S--S-------------------------------------SSSSSSSSSSSSSSSSS--S---------------S-
---S-------S--------------------------------------------------------------------
-----------------------------------------------------------S--------------------
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--------------------------------------------------------------------------S-----
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----------------S--------------------------------------------------------------S
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-----------------S------------S---S--------------S------------------------------
----------------------------S---------------------------------------------------
------------------------S-----------------------------------------------S-------
------------------S-------------------------------------------------------------
-----------S---------S-------------------------------------S--------------------
-----------------------------------------------------------S----------------SS--
-----------SSSSSS--------S--------------S----------------------------------S----
-----------------------S-S------------S-----------------------------------------
------------------------------S------------------------SSS----------------------
----S---------------------------------------------------------------------------
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------------------------------------------------------------------------------S-
------------------------------------S----------------------------S--------------
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>forward_408
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--------------------------------------------------------------------TGGATGGGAGGG
AGTACCAG------------------------------------------------------------------------
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>reverse_1600
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-------------------------------------------------------------------------------G
GACTGCGGGTTCAAGATCA-------------------------------------------------------------
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>forward_691
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-------------------------------GAGAAACGATGCGGCAGAAC-----------------------------
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>reverse_2140
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-----------------------------------------------------------AAGCTACTCCCTCCGTTTCT-
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