Multiple sequence alignment - TraesCS2B01G239600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G239600 chr2B 100.000 2651 0 0 1 2651 243791829 243789179 0.000000e+00 4896.0
1 TraesCS2B01G239600 chr2B 87.179 195 25 0 1001 1195 243830778 243830584 3.430000e-54 222.0
2 TraesCS2B01G239600 chr2B 85.965 57 6 2 454 510 798579414 798579360 2.850000e-05 60.2
3 TraesCS2B01G239600 chr2D 90.775 1832 117 25 453 2247 187649091 187647275 0.000000e+00 2399.0
4 TraesCS2B01G239600 chr2D 83.924 367 42 10 2295 2651 187647160 187646801 4.230000e-88 335.0
5 TraesCS2B01G239600 chr2D 86.154 195 27 0 1001 1195 187969805 187969611 7.430000e-51 211.0
6 TraesCS2B01G239600 chr2A 89.108 1625 90 42 702 2247 200627461 200625845 0.000000e+00 1940.0
7 TraesCS2B01G239600 chr2A 88.251 383 14 5 2295 2651 200625719 200625342 1.890000e-116 429.0
8 TraesCS2B01G239600 chr2A 86.154 195 27 0 1001 1195 200920151 200919957 7.430000e-51 211.0
9 TraesCS2B01G239600 chr2A 100.000 30 0 0 2244 2273 200625807 200625778 3.690000e-04 56.5
10 TraesCS2B01G239600 chr6D 86.932 176 23 0 1439 1614 463478762 463478587 5.790000e-47 198.0
11 TraesCS2B01G239600 chr6D 82.967 182 31 0 1432 1613 24001851 24002032 5.870000e-37 165.0
12 TraesCS2B01G239600 chr6B 86.932 176 23 0 1439 1614 706746999 706746824 5.790000e-47 198.0
13 TraesCS2B01G239600 chr6B 78.571 168 30 4 453 619 566341219 566341381 3.610000e-19 106.0
14 TraesCS2B01G239600 chr6A 86.364 176 24 0 1439 1614 609983186 609983011 2.690000e-45 193.0
15 TraesCS2B01G239600 chr6A 83.240 179 28 2 1432 1609 22522968 22523145 2.110000e-36 163.0
16 TraesCS2B01G239600 chr6A 80.925 173 25 7 453 623 520845440 520845606 2.140000e-26 130.0
17 TraesCS2B01G239600 chr6A 86.000 50 7 0 562 611 422376094 422376143 1.000000e-03 54.7
18 TraesCS2B01G239600 chr4B 91.603 131 11 0 1061 1191 41743730 41743860 5.830000e-42 182.0
19 TraesCS2B01G239600 chr4D 90.840 131 12 0 1061 1191 29176724 29176854 2.710000e-40 176.0
20 TraesCS2B01G239600 chr7B 88.060 134 16 0 1061 1194 677538701 677538568 2.730000e-35 159.0
21 TraesCS2B01G239600 chr7B 87.037 54 7 0 565 618 368197935 368197882 7.920000e-06 62.1
22 TraesCS2B01G239600 chr7A 87.313 134 17 0 1061 1194 690918422 690918289 1.270000e-33 154.0
23 TraesCS2B01G239600 chr7A 84.416 77 12 0 149 225 296462908 296462832 2.830000e-10 76.8
24 TraesCS2B01G239600 chr3A 81.868 182 31 2 1432 1612 746261686 746261866 4.570000e-33 152.0
25 TraesCS2B01G239600 chr1A 81.443 194 29 6 1423 1613 21023091 21023280 4.570000e-33 152.0
26 TraesCS2B01G239600 chr1A 81.481 81 13 2 119 198 108800291 108800212 6.130000e-07 65.8
27 TraesCS2B01G239600 chr3D 90.196 51 5 0 568 618 567539299 567539249 1.700000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G239600 chr2B 243789179 243791829 2650 True 4896.0 4896 100.0000 1 2651 1 chr2B.!!$R1 2650
1 TraesCS2B01G239600 chr2D 187646801 187649091 2290 True 1367.0 2399 87.3495 453 2651 2 chr2D.!!$R2 2198
2 TraesCS2B01G239600 chr2A 200625342 200627461 2119 True 808.5 1940 92.4530 702 2651 3 chr2A.!!$R2 1949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.036732 TGGTGATGTGTTGGAGCTCC 59.963 55.0 26.78 26.78 0.0 4.70 F
1285 1300 0.030638 CAGTGGTTGGTTCGGCAAAG 59.969 55.0 0.00 0.00 0.0 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1326 1342 0.107945 AAATCTGAGAGCCGGCAGAC 60.108 55.0 31.54 19.23 43.26 3.51 R
2361 2530 0.737804 TCTTTTGCTTGCGCTTGACA 59.262 45.0 9.73 0.00 36.97 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.126734 GCATCAGCCACACGTTGC 60.127 61.111 0.00 0.00 33.58 4.17
38 39 2.906939 GCATCAGCCACACGTTGCA 61.907 57.895 4.51 0.00 33.58 4.08
39 40 1.878070 CATCAGCCACACGTTGCAT 59.122 52.632 4.51 0.00 0.00 3.96
40 41 0.241749 CATCAGCCACACGTTGCATT 59.758 50.000 4.51 0.00 0.00 3.56
41 42 0.241749 ATCAGCCACACGTTGCATTG 59.758 50.000 4.51 0.00 0.00 2.82
42 43 1.372004 CAGCCACACGTTGCATTGG 60.372 57.895 4.51 0.00 0.00 3.16
43 44 1.528076 AGCCACACGTTGCATTGGA 60.528 52.632 4.51 0.00 0.00 3.53
44 45 1.081242 GCCACACGTTGCATTGGAG 60.081 57.895 0.00 0.00 0.00 3.86
45 46 1.081242 CCACACGTTGCATTGGAGC 60.081 57.895 0.00 0.00 0.00 4.70
46 47 1.518056 CCACACGTTGCATTGGAGCT 61.518 55.000 0.00 0.00 34.99 4.09
47 48 0.311790 CACACGTTGCATTGGAGCTT 59.688 50.000 0.00 0.00 34.99 3.74
48 49 0.593128 ACACGTTGCATTGGAGCTTC 59.407 50.000 0.00 0.00 34.99 3.86
49 50 0.592637 CACGTTGCATTGGAGCTTCA 59.407 50.000 0.00 0.00 34.99 3.02
50 51 0.593128 ACGTTGCATTGGAGCTTCAC 59.407 50.000 0.00 0.00 34.99 3.18
51 52 0.109597 CGTTGCATTGGAGCTTCACC 60.110 55.000 0.00 0.00 34.99 4.02
52 53 0.109597 GTTGCATTGGAGCTTCACCG 60.110 55.000 0.00 0.00 34.99 4.94
53 54 1.243342 TTGCATTGGAGCTTCACCGG 61.243 55.000 0.00 0.00 34.99 5.28
54 55 1.377202 GCATTGGAGCTTCACCGGA 60.377 57.895 9.46 0.00 0.00 5.14
55 56 1.372087 GCATTGGAGCTTCACCGGAG 61.372 60.000 9.46 0.00 0.00 4.63
56 57 1.078143 ATTGGAGCTTCACCGGAGC 60.078 57.895 9.46 7.07 0.00 4.70
57 58 2.543067 ATTGGAGCTTCACCGGAGCC 62.543 60.000 9.46 0.78 0.00 4.70
58 59 3.394836 GGAGCTTCACCGGAGCCT 61.395 66.667 9.46 0.00 0.00 4.58
59 60 2.665603 GAGCTTCACCGGAGCCTT 59.334 61.111 9.46 0.00 0.00 4.35
60 61 1.003233 GAGCTTCACCGGAGCCTTT 60.003 57.895 9.46 0.00 0.00 3.11
61 62 1.301677 GAGCTTCACCGGAGCCTTTG 61.302 60.000 9.46 0.00 0.00 2.77
62 63 2.335712 GCTTCACCGGAGCCTTTGG 61.336 63.158 9.46 0.00 0.00 3.28
63 64 1.073199 CTTCACCGGAGCCTTTGGT 59.927 57.895 9.46 0.00 36.10 3.67
66 67 3.495729 ACCGGAGCCTTTGGTGAT 58.504 55.556 9.46 0.00 33.91 3.06
67 68 1.002134 ACCGGAGCCTTTGGTGATG 60.002 57.895 9.46 0.00 33.91 3.07
68 69 1.002134 CCGGAGCCTTTGGTGATGT 60.002 57.895 0.00 0.00 0.00 3.06
69 70 1.308069 CCGGAGCCTTTGGTGATGTG 61.308 60.000 0.00 0.00 0.00 3.21
70 71 0.606401 CGGAGCCTTTGGTGATGTGT 60.606 55.000 0.00 0.00 0.00 3.72
71 72 1.620822 GGAGCCTTTGGTGATGTGTT 58.379 50.000 0.00 0.00 0.00 3.32
72 73 1.270550 GGAGCCTTTGGTGATGTGTTG 59.729 52.381 0.00 0.00 0.00 3.33
73 74 1.270550 GAGCCTTTGGTGATGTGTTGG 59.729 52.381 0.00 0.00 0.00 3.77
74 75 1.133513 AGCCTTTGGTGATGTGTTGGA 60.134 47.619 0.00 0.00 0.00 3.53
75 76 1.270550 GCCTTTGGTGATGTGTTGGAG 59.729 52.381 0.00 0.00 0.00 3.86
76 77 1.270550 CCTTTGGTGATGTGTTGGAGC 59.729 52.381 0.00 0.00 0.00 4.70
77 78 2.233271 CTTTGGTGATGTGTTGGAGCT 58.767 47.619 0.00 0.00 0.00 4.09
78 79 1.896220 TTGGTGATGTGTTGGAGCTC 58.104 50.000 4.71 4.71 0.00 4.09
79 80 0.036732 TGGTGATGTGTTGGAGCTCC 59.963 55.000 26.78 26.78 0.00 4.70
80 81 0.036732 GGTGATGTGTTGGAGCTCCA 59.963 55.000 32.00 32.00 45.94 3.86
81 82 1.340405 GGTGATGTGTTGGAGCTCCAT 60.340 52.381 35.42 20.92 46.97 3.41
82 83 2.012673 GTGATGTGTTGGAGCTCCATC 58.987 52.381 35.42 32.13 46.97 3.51
83 84 1.293924 GATGTGTTGGAGCTCCATCG 58.706 55.000 35.42 0.00 46.97 3.84
84 85 0.107508 ATGTGTTGGAGCTCCATCGG 60.108 55.000 35.42 0.00 46.97 4.18
85 86 1.450312 GTGTTGGAGCTCCATCGGG 60.450 63.158 35.42 0.00 46.97 5.14
86 87 2.514824 GTTGGAGCTCCATCGGGC 60.515 66.667 35.42 18.67 46.97 6.13
87 88 4.161295 TTGGAGCTCCATCGGGCG 62.161 66.667 35.42 0.00 46.97 6.13
89 90 4.593864 GGAGCTCCATCGGGCGTC 62.594 72.222 28.43 0.00 35.64 5.19
90 91 4.933064 GAGCTCCATCGGGCGTCG 62.933 72.222 0.87 0.00 40.90 5.12
93 94 4.907034 CTCCATCGGGCGTCGTCG 62.907 72.222 0.00 0.00 40.32 5.12
104 105 3.335534 GTCGTCGGTGCTGCGTTT 61.336 61.111 0.00 0.00 0.00 3.60
105 106 3.334751 TCGTCGGTGCTGCGTTTG 61.335 61.111 0.00 0.00 0.00 2.93
106 107 3.334751 CGTCGGTGCTGCGTTTGA 61.335 61.111 0.00 0.00 0.00 2.69
107 108 2.551270 GTCGGTGCTGCGTTTGAG 59.449 61.111 0.00 0.00 0.00 3.02
108 109 3.345808 TCGGTGCTGCGTTTGAGC 61.346 61.111 0.00 0.00 36.95 4.26
109 110 3.349006 CGGTGCTGCGTTTGAGCT 61.349 61.111 0.00 0.00 37.35 4.09
110 111 2.558313 GGTGCTGCGTTTGAGCTC 59.442 61.111 6.82 6.82 37.35 4.09
111 112 2.558313 GTGCTGCGTTTGAGCTCC 59.442 61.111 12.15 0.00 37.35 4.70
112 113 3.043713 TGCTGCGTTTGAGCTCCG 61.044 61.111 12.15 8.94 37.35 4.63
114 115 3.793144 CTGCGTTTGAGCTCCGCC 61.793 66.667 26.02 13.21 46.44 6.13
117 118 4.735132 CGTTTGAGCTCCGCCGGA 62.735 66.667 12.15 5.37 0.00 5.14
125 126 2.436646 CTCCGCCGGAGTTGCATT 60.437 61.111 24.93 0.00 44.25 3.56
126 127 2.745884 TCCGCCGGAGTTGCATTG 60.746 61.111 5.05 0.00 0.00 2.82
127 128 3.814268 CCGCCGGAGTTGCATTGG 61.814 66.667 5.05 0.00 0.00 3.16
128 129 2.745884 CGCCGGAGTTGCATTGGA 60.746 61.111 5.05 0.00 0.00 3.53
129 130 2.753966 CGCCGGAGTTGCATTGGAG 61.754 63.158 5.05 0.00 0.00 3.86
130 131 3.056313 GCCGGAGTTGCATTGGAGC 62.056 63.158 5.05 0.00 0.00 4.70
131 132 1.377725 CCGGAGTTGCATTGGAGCT 60.378 57.895 0.00 0.00 34.99 4.09
132 133 0.962356 CCGGAGTTGCATTGGAGCTT 60.962 55.000 0.00 0.00 34.99 3.74
133 134 0.883833 CGGAGTTGCATTGGAGCTTT 59.116 50.000 0.00 0.00 34.99 3.51
134 135 1.401931 CGGAGTTGCATTGGAGCTTTG 60.402 52.381 0.00 0.00 34.99 2.77
135 136 1.670967 GGAGTTGCATTGGAGCTTTGC 60.671 52.381 0.00 0.00 36.91 3.68
136 137 0.319405 AGTTGCATTGGAGCTTTGCC 59.681 50.000 8.72 0.00 35.51 4.52
137 138 0.671472 GTTGCATTGGAGCTTTGCCC 60.671 55.000 8.72 0.00 35.51 5.36
138 139 2.157305 TTGCATTGGAGCTTTGCCCG 62.157 55.000 8.72 0.00 35.51 6.13
139 140 2.342650 GCATTGGAGCTTTGCCCGA 61.343 57.895 0.00 0.00 0.00 5.14
140 141 1.805254 CATTGGAGCTTTGCCCGAG 59.195 57.895 0.00 0.00 0.00 4.63
141 142 2.048603 ATTGGAGCTTTGCCCGAGC 61.049 57.895 0.00 0.00 40.43 5.03
142 143 4.722700 TGGAGCTTTGCCCGAGCC 62.723 66.667 0.00 0.00 41.03 4.70
156 157 4.675029 AGCCGCCGTTGCTACGTT 62.675 61.111 18.90 0.00 46.20 3.99
157 158 4.439472 GCCGCCGTTGCTACGTTG 62.439 66.667 18.90 10.58 46.20 4.10
158 159 3.784412 CCGCCGTTGCTACGTTGG 61.784 66.667 18.90 15.37 46.20 3.77
159 160 2.735478 CGCCGTTGCTACGTTGGA 60.735 61.111 18.90 0.00 46.20 3.53
160 161 2.726691 CGCCGTTGCTACGTTGGAG 61.727 63.158 18.90 4.88 46.20 3.86
161 162 3.023591 GCCGTTGCTACGTTGGAGC 62.024 63.158 18.90 10.97 46.20 4.70
162 163 1.374252 CCGTTGCTACGTTGGAGCT 60.374 57.895 18.90 0.00 46.20 4.09
163 164 1.352156 CCGTTGCTACGTTGGAGCTC 61.352 60.000 18.90 4.71 46.20 4.09
164 165 0.388649 CGTTGCTACGTTGGAGCTCT 60.389 55.000 14.64 0.00 42.72 4.09
165 166 1.071605 GTTGCTACGTTGGAGCTCTG 58.928 55.000 14.64 4.05 40.76 3.35
166 167 0.679505 TTGCTACGTTGGAGCTCTGT 59.320 50.000 14.64 9.83 40.76 3.41
167 168 0.243907 TGCTACGTTGGAGCTCTGTC 59.756 55.000 14.64 3.27 40.76 3.51
168 169 0.798771 GCTACGTTGGAGCTCTGTCG 60.799 60.000 14.64 16.62 36.96 4.35
169 170 0.179161 CTACGTTGGAGCTCTGTCGG 60.179 60.000 14.64 2.39 0.00 4.79
170 171 0.607217 TACGTTGGAGCTCTGTCGGA 60.607 55.000 14.64 9.51 0.00 4.55
171 172 1.153939 CGTTGGAGCTCTGTCGGAG 60.154 63.158 14.64 4.11 44.49 4.63
172 173 1.867919 CGTTGGAGCTCTGTCGGAGT 61.868 60.000 14.64 0.00 43.62 3.85
173 174 0.318762 GTTGGAGCTCTGTCGGAGTT 59.681 55.000 14.64 4.00 43.62 3.01
174 175 0.318441 TTGGAGCTCTGTCGGAGTTG 59.682 55.000 14.64 0.00 43.62 3.16
175 176 1.446966 GGAGCTCTGTCGGAGTTGC 60.447 63.158 14.64 5.93 43.62 4.17
176 177 1.290324 GAGCTCTGTCGGAGTTGCA 59.710 57.895 6.43 0.00 43.62 4.08
177 178 0.108424 GAGCTCTGTCGGAGTTGCAT 60.108 55.000 6.43 0.00 43.62 3.96
178 179 0.322975 AGCTCTGTCGGAGTTGCATT 59.677 50.000 10.43 0.00 43.62 3.56
179 180 0.445436 GCTCTGTCGGAGTTGCATTG 59.555 55.000 10.43 0.00 43.62 2.82
180 181 1.081892 CTCTGTCGGAGTTGCATTGG 58.918 55.000 0.00 0.00 37.30 3.16
181 182 0.684535 TCTGTCGGAGTTGCATTGGA 59.315 50.000 0.00 0.00 0.00 3.53
182 183 1.081892 CTGTCGGAGTTGCATTGGAG 58.918 55.000 0.00 0.00 0.00 3.86
183 184 0.955428 TGTCGGAGTTGCATTGGAGC 60.955 55.000 0.00 0.00 0.00 4.70
184 185 0.674895 GTCGGAGTTGCATTGGAGCT 60.675 55.000 0.00 0.00 34.99 4.09
185 186 0.036732 TCGGAGTTGCATTGGAGCTT 59.963 50.000 0.00 0.00 34.99 3.74
186 187 0.449388 CGGAGTTGCATTGGAGCTTC 59.551 55.000 0.00 0.00 34.99 3.86
187 188 0.449388 GGAGTTGCATTGGAGCTTCG 59.551 55.000 0.00 0.00 34.99 3.79
188 189 0.179179 GAGTTGCATTGGAGCTTCGC 60.179 55.000 0.00 0.00 34.99 4.70
189 190 1.153958 GTTGCATTGGAGCTTCGCC 60.154 57.895 0.00 0.00 34.99 5.54
190 191 2.689785 TTGCATTGGAGCTTCGCCG 61.690 57.895 0.00 0.00 34.99 6.46
191 192 3.880846 GCATTGGAGCTTCGCCGG 61.881 66.667 0.00 0.00 0.00 6.13
192 193 2.125147 CATTGGAGCTTCGCCGGA 60.125 61.111 5.05 0.00 0.00 5.14
193 194 2.125106 ATTGGAGCTTCGCCGGAC 60.125 61.111 5.05 0.00 0.00 4.79
194 195 4.735132 TTGGAGCTTCGCCGGACG 62.735 66.667 5.05 9.12 45.62 4.79
206 207 4.728102 CGGACGCCGTTGGTGCTA 62.728 66.667 9.69 0.00 42.73 3.49
207 208 3.116531 GGACGCCGTTGGTGCTAC 61.117 66.667 0.00 0.00 36.54 3.58
208 209 2.356553 GACGCCGTTGGTGCTACA 60.357 61.111 0.00 0.00 36.54 2.74
209 210 1.740296 GACGCCGTTGGTGCTACAT 60.740 57.895 0.00 0.00 36.54 2.29
210 211 1.296056 GACGCCGTTGGTGCTACATT 61.296 55.000 0.00 0.00 36.54 2.71
211 212 1.134487 CGCCGTTGGTGCTACATTG 59.866 57.895 0.00 0.00 0.00 2.82
212 213 1.506262 GCCGTTGGTGCTACATTGG 59.494 57.895 0.00 0.00 0.00 3.16
213 214 0.958382 GCCGTTGGTGCTACATTGGA 60.958 55.000 0.00 0.00 0.00 3.53
214 215 1.086696 CCGTTGGTGCTACATTGGAG 58.913 55.000 0.00 0.00 0.00 3.86
215 216 0.447801 CGTTGGTGCTACATTGGAGC 59.552 55.000 14.27 14.27 40.53 4.70
216 217 1.826385 GTTGGTGCTACATTGGAGCT 58.174 50.000 21.23 0.00 40.76 4.09
217 218 1.740025 GTTGGTGCTACATTGGAGCTC 59.260 52.381 21.23 17.23 40.76 4.09
218 219 3.086733 GGTGCTACATTGGAGCTCC 57.913 57.895 26.78 26.78 43.97 4.70
219 220 3.861341 GTGCTACATTGGAGCTCCA 57.139 52.632 32.00 32.00 45.94 3.86
232 233 4.722193 CTCCACCGGAGTTGCATT 57.278 55.556 9.46 0.00 44.25 3.56
233 234 3.853104 CTCCACCGGAGTTGCATTA 57.147 52.632 9.46 0.00 44.25 1.90
234 235 2.107950 CTCCACCGGAGTTGCATTAA 57.892 50.000 9.46 0.00 44.25 1.40
235 236 2.432444 CTCCACCGGAGTTGCATTAAA 58.568 47.619 9.46 0.00 44.25 1.52
236 237 2.420022 CTCCACCGGAGTTGCATTAAAG 59.580 50.000 9.46 0.00 44.25 1.85
237 238 1.135402 CCACCGGAGTTGCATTAAAGC 60.135 52.381 9.46 0.00 0.00 3.51
238 239 1.812571 CACCGGAGTTGCATTAAAGCT 59.187 47.619 9.46 0.00 34.99 3.74
239 240 2.228822 CACCGGAGTTGCATTAAAGCTT 59.771 45.455 9.46 0.00 34.99 3.74
240 241 2.488153 ACCGGAGTTGCATTAAAGCTTC 59.512 45.455 9.46 0.00 34.99 3.86
241 242 2.476185 CCGGAGTTGCATTAAAGCTTCG 60.476 50.000 0.00 0.00 34.99 3.79
242 243 2.519963 GGAGTTGCATTAAAGCTTCGC 58.480 47.619 0.00 1.02 34.99 4.70
243 244 2.519963 GAGTTGCATTAAAGCTTCGCC 58.480 47.619 0.00 0.00 34.99 5.54
244 245 1.135689 AGTTGCATTAAAGCTTCGCCG 60.136 47.619 0.00 0.00 34.99 6.46
245 246 0.170116 TTGCATTAAAGCTTCGCCGG 59.830 50.000 0.00 0.00 34.99 6.13
246 247 1.586303 GCATTAAAGCTTCGCCGGC 60.586 57.895 19.07 19.07 0.00 6.13
247 248 1.064134 CATTAAAGCTTCGCCGGCC 59.936 57.895 23.46 6.58 0.00 6.13
248 249 2.469516 ATTAAAGCTTCGCCGGCCG 61.470 57.895 23.46 21.04 38.61 6.13
249 250 3.887335 TTAAAGCTTCGCCGGCCGT 62.887 57.895 26.12 4.09 38.35 5.68
270 271 4.139420 CGCAGCGTTGGAGCTTCG 62.139 66.667 6.65 0.00 46.80 3.79
271 272 3.044305 GCAGCGTTGGAGCTTCGT 61.044 61.111 0.16 0.00 46.80 3.85
272 273 2.607892 GCAGCGTTGGAGCTTCGTT 61.608 57.895 0.16 0.00 46.80 3.85
273 274 1.205064 CAGCGTTGGAGCTTCGTTG 59.795 57.895 0.00 0.00 46.80 4.10
274 275 1.961277 AGCGTTGGAGCTTCGTTGG 60.961 57.895 0.00 0.00 46.80 3.77
275 276 1.959226 GCGTTGGAGCTTCGTTGGA 60.959 57.895 0.00 0.00 0.00 3.53
276 277 1.860078 CGTTGGAGCTTCGTTGGAC 59.140 57.895 0.00 0.00 0.00 4.02
277 278 1.860078 GTTGGAGCTTCGTTGGACG 59.140 57.895 0.00 0.00 44.19 4.79
278 279 1.959226 TTGGAGCTTCGTTGGACGC 60.959 57.895 0.00 0.00 42.21 5.19
279 280 3.119096 GGAGCTTCGTTGGACGCC 61.119 66.667 0.00 0.00 42.21 5.68
280 281 3.479269 GAGCTTCGTTGGACGCCG 61.479 66.667 0.00 0.00 42.21 6.46
283 284 2.126228 CTTCGTTGGACGCCGCTA 60.126 61.111 0.00 0.00 42.21 4.26
284 285 1.735198 CTTCGTTGGACGCCGCTAA 60.735 57.895 0.00 0.00 42.21 3.09
285 286 1.683790 CTTCGTTGGACGCCGCTAAG 61.684 60.000 0.00 0.00 42.21 2.18
286 287 3.849953 CGTTGGACGCCGCTAAGC 61.850 66.667 0.00 0.00 33.65 3.09
287 288 2.434359 GTTGGACGCCGCTAAGCT 60.434 61.111 0.00 0.00 0.00 3.74
288 289 2.434185 TTGGACGCCGCTAAGCTG 60.434 61.111 0.00 0.00 0.00 4.24
291 292 3.558411 GACGCCGCTAAGCTGCAG 61.558 66.667 10.11 10.11 38.65 4.41
292 293 4.379243 ACGCCGCTAAGCTGCAGT 62.379 61.111 16.64 0.00 38.65 4.40
293 294 3.857854 CGCCGCTAAGCTGCAGTG 61.858 66.667 16.64 4.78 38.65 3.66
294 295 3.503363 GCCGCTAAGCTGCAGTGG 61.503 66.667 16.64 19.33 44.90 4.00
295 296 2.265739 CCGCTAAGCTGCAGTGGA 59.734 61.111 19.02 0.00 44.90 4.02
296 297 1.812922 CCGCTAAGCTGCAGTGGAG 60.813 63.158 19.02 7.39 44.90 3.86
297 298 2.459442 CGCTAAGCTGCAGTGGAGC 61.459 63.158 27.51 27.51 36.65 4.70
301 302 4.916358 AGCTGCAGTGGAGCTTTT 57.084 50.000 31.15 12.12 44.65 2.27
302 303 2.338381 AGCTGCAGTGGAGCTTTTG 58.662 52.632 31.15 0.00 44.65 2.44
303 304 0.466922 AGCTGCAGTGGAGCTTTTGT 60.467 50.000 31.15 11.34 44.65 2.83
304 305 0.039708 GCTGCAGTGGAGCTTTTGTC 60.040 55.000 27.49 0.00 33.37 3.18
305 306 1.311859 CTGCAGTGGAGCTTTTGTCA 58.688 50.000 5.25 0.00 34.99 3.58
306 307 1.266175 CTGCAGTGGAGCTTTTGTCAG 59.734 52.381 5.25 0.00 34.99 3.51
307 308 0.595095 GCAGTGGAGCTTTTGTCAGG 59.405 55.000 0.00 0.00 0.00 3.86
308 309 1.242076 CAGTGGAGCTTTTGTCAGGG 58.758 55.000 0.00 0.00 0.00 4.45
309 310 0.846693 AGTGGAGCTTTTGTCAGGGT 59.153 50.000 0.00 0.00 0.00 4.34
310 311 0.954452 GTGGAGCTTTTGTCAGGGTG 59.046 55.000 0.00 0.00 0.00 4.61
311 312 0.823356 TGGAGCTTTTGTCAGGGTGC 60.823 55.000 0.00 0.00 0.00 5.01
312 313 0.823356 GGAGCTTTTGTCAGGGTGCA 60.823 55.000 0.00 0.00 0.00 4.57
313 314 0.595095 GAGCTTTTGTCAGGGTGCAG 59.405 55.000 0.00 0.00 0.00 4.41
314 315 1.006922 GCTTTTGTCAGGGTGCAGC 60.007 57.895 7.55 7.55 0.00 5.25
315 316 1.737355 GCTTTTGTCAGGGTGCAGCA 61.737 55.000 19.06 0.00 0.00 4.41
316 317 0.313043 CTTTTGTCAGGGTGCAGCAG 59.687 55.000 19.06 9.74 0.00 4.24
317 318 1.737355 TTTTGTCAGGGTGCAGCAGC 61.737 55.000 19.06 16.66 42.57 5.25
318 319 4.994471 TGTCAGGGTGCAGCAGCG 62.994 66.667 19.06 5.85 46.23 5.18
331 332 4.016629 CAGCGCTGCGTTGAAGCA 62.017 61.111 30.73 0.00 45.96 3.91
339 340 2.334971 TGCGTTGAAGCAATCACATG 57.665 45.000 0.00 0.00 45.06 3.21
340 341 0.986992 GCGTTGAAGCAATCACATGC 59.013 50.000 0.00 0.00 46.78 4.06
350 351 4.802876 GCAATCACATGCTTACTACTCC 57.197 45.455 0.00 0.00 43.06 3.85
351 352 3.561725 GCAATCACATGCTTACTACTCCC 59.438 47.826 0.00 0.00 43.06 4.30
352 353 3.735237 ATCACATGCTTACTACTCCCG 57.265 47.619 0.00 0.00 0.00 5.14
353 354 2.453521 TCACATGCTTACTACTCCCGT 58.546 47.619 0.00 0.00 0.00 5.28
354 355 2.165641 TCACATGCTTACTACTCCCGTG 59.834 50.000 0.00 0.00 0.00 4.94
355 356 2.165641 CACATGCTTACTACTCCCGTGA 59.834 50.000 0.00 0.00 0.00 4.35
356 357 2.165845 ACATGCTTACTACTCCCGTGAC 59.834 50.000 0.00 0.00 0.00 3.67
357 358 0.806868 TGCTTACTACTCCCGTGACG 59.193 55.000 0.00 0.00 0.00 4.35
358 359 0.807496 GCTTACTACTCCCGTGACGT 59.193 55.000 3.64 0.00 0.00 4.34
359 360 1.200948 GCTTACTACTCCCGTGACGTT 59.799 52.381 3.64 0.00 0.00 3.99
360 361 2.860062 CTTACTACTCCCGTGACGTTG 58.140 52.381 3.64 0.00 0.00 4.10
361 362 1.896220 TACTACTCCCGTGACGTTGT 58.104 50.000 3.64 2.16 0.00 3.32
362 363 1.035139 ACTACTCCCGTGACGTTGTT 58.965 50.000 3.64 0.00 0.00 2.83
363 364 1.269413 ACTACTCCCGTGACGTTGTTG 60.269 52.381 3.64 3.51 0.00 3.33
364 365 0.598158 TACTCCCGTGACGTTGTTGC 60.598 55.000 3.64 0.00 0.00 4.17
365 366 2.589442 TCCCGTGACGTTGTTGCC 60.589 61.111 3.64 0.00 0.00 4.52
366 367 2.897846 CCCGTGACGTTGTTGCCA 60.898 61.111 3.64 0.00 0.00 4.92
367 368 2.258013 CCCGTGACGTTGTTGCCAT 61.258 57.895 3.64 0.00 0.00 4.40
368 369 1.206578 CCGTGACGTTGTTGCCATC 59.793 57.895 3.64 0.00 0.00 3.51
369 370 1.206578 CGTGACGTTGTTGCCATCC 59.793 57.895 0.00 0.00 0.00 3.51
370 371 1.502990 CGTGACGTTGTTGCCATCCA 61.503 55.000 0.00 0.00 0.00 3.41
371 372 0.665835 GTGACGTTGTTGCCATCCAA 59.334 50.000 0.00 0.00 0.00 3.53
379 380 0.524414 GTTGCCATCCAACGGTTACC 59.476 55.000 0.00 0.00 43.85 2.85
380 381 0.110678 TTGCCATCCAACGGTTACCA 59.889 50.000 1.13 0.00 0.00 3.25
381 382 0.322098 TGCCATCCAACGGTTACCAG 60.322 55.000 1.13 0.00 0.00 4.00
382 383 1.029947 GCCATCCAACGGTTACCAGG 61.030 60.000 1.13 0.00 0.00 4.45
383 384 1.029947 CCATCCAACGGTTACCAGGC 61.030 60.000 1.13 0.00 0.00 4.85
384 385 1.078708 ATCCAACGGTTACCAGGCG 60.079 57.895 1.13 0.00 0.00 5.52
385 386 3.428282 CCAACGGTTACCAGGCGC 61.428 66.667 0.00 0.00 0.00 6.53
386 387 2.358247 CAACGGTTACCAGGCGCT 60.358 61.111 7.64 0.00 0.00 5.92
387 388 2.358247 AACGGTTACCAGGCGCTG 60.358 61.111 7.64 3.34 0.00 5.18
388 389 2.874664 AACGGTTACCAGGCGCTGA 61.875 57.895 7.64 0.00 32.44 4.26
389 390 2.509336 CGGTTACCAGGCGCTGAG 60.509 66.667 7.64 0.00 32.44 3.35
407 408 4.192000 CAGACAACTGCCTAGCCG 57.808 61.111 0.00 0.00 37.33 5.52
408 409 1.448540 CAGACAACTGCCTAGCCGG 60.449 63.158 0.00 0.00 37.33 6.13
409 410 1.609501 AGACAACTGCCTAGCCGGA 60.610 57.895 5.05 0.00 33.16 5.14
410 411 0.978146 AGACAACTGCCTAGCCGGAT 60.978 55.000 5.05 0.00 33.16 4.18
411 412 0.811616 GACAACTGCCTAGCCGGATG 60.812 60.000 5.05 0.00 33.16 3.51
412 413 1.264749 ACAACTGCCTAGCCGGATGA 61.265 55.000 5.05 0.00 33.16 2.92
413 414 0.107456 CAACTGCCTAGCCGGATGAT 59.893 55.000 5.05 0.00 33.16 2.45
414 415 0.839946 AACTGCCTAGCCGGATGATT 59.160 50.000 5.05 0.00 33.16 2.57
415 416 0.839946 ACTGCCTAGCCGGATGATTT 59.160 50.000 5.05 0.00 33.16 2.17
416 417 1.202698 ACTGCCTAGCCGGATGATTTC 60.203 52.381 5.05 0.00 33.16 2.17
417 418 1.071385 CTGCCTAGCCGGATGATTTCT 59.929 52.381 5.05 0.00 33.16 2.52
418 419 1.490490 TGCCTAGCCGGATGATTTCTT 59.510 47.619 5.05 0.00 33.16 2.52
419 420 2.703536 TGCCTAGCCGGATGATTTCTTA 59.296 45.455 5.05 0.00 33.16 2.10
420 421 3.244215 TGCCTAGCCGGATGATTTCTTAG 60.244 47.826 5.05 0.00 33.16 2.18
421 422 3.006967 GCCTAGCCGGATGATTTCTTAGA 59.993 47.826 5.05 0.00 33.16 2.10
422 423 4.503296 GCCTAGCCGGATGATTTCTTAGAA 60.503 45.833 5.05 0.00 33.16 2.10
423 424 5.611374 CCTAGCCGGATGATTTCTTAGAAA 58.389 41.667 5.05 9.99 33.16 2.52
424 425 6.055588 CCTAGCCGGATGATTTCTTAGAAAA 58.944 40.000 11.63 0.00 33.16 2.29
425 426 6.712547 CCTAGCCGGATGATTTCTTAGAAAAT 59.287 38.462 11.63 1.62 33.16 1.82
426 427 6.625873 AGCCGGATGATTTCTTAGAAAATC 57.374 37.500 11.63 10.46 43.10 2.17
435 436 8.201554 TGATTTCTTAGAAAATCATCCGACTG 57.798 34.615 11.63 0.00 45.85 3.51
436 437 8.040727 TGATTTCTTAGAAAATCATCCGACTGA 58.959 33.333 11.63 0.00 45.85 3.41
437 438 8.970859 ATTTCTTAGAAAATCATCCGACTGAT 57.029 30.769 11.63 0.00 37.47 2.90
438 439 8.792830 TTTCTTAGAAAATCATCCGACTGATT 57.207 30.769 4.77 6.60 45.48 2.57
446 447 6.668541 AATCATCCGACTGATTTGTAACAG 57.331 37.500 6.60 0.00 41.89 3.16
448 449 5.547465 TCATCCGACTGATTTGTAACAGTT 58.453 37.500 0.00 0.00 45.54 3.16
449 450 5.637810 TCATCCGACTGATTTGTAACAGTTC 59.362 40.000 0.00 0.00 45.54 3.01
450 451 4.312443 TCCGACTGATTTGTAACAGTTCC 58.688 43.478 0.00 0.00 45.54 3.62
451 452 3.435671 CCGACTGATTTGTAACAGTTCCC 59.564 47.826 0.00 0.00 45.54 3.97
452 453 4.315803 CGACTGATTTGTAACAGTTCCCT 58.684 43.478 0.00 0.00 45.54 4.20
453 454 4.755123 CGACTGATTTGTAACAGTTCCCTT 59.245 41.667 0.00 0.00 45.54 3.95
454 455 5.238650 CGACTGATTTGTAACAGTTCCCTTT 59.761 40.000 0.00 0.00 45.54 3.11
455 456 6.238648 CGACTGATTTGTAACAGTTCCCTTTT 60.239 38.462 0.00 0.00 45.54 2.27
456 457 7.418337 ACTGATTTGTAACAGTTCCCTTTTT 57.582 32.000 0.00 0.00 43.52 1.94
495 496 2.809601 CGCCGCTATGTATCCGCC 60.810 66.667 0.00 0.00 0.00 6.13
498 499 1.014564 GCCGCTATGTATCCGCCTTC 61.015 60.000 0.00 0.00 0.00 3.46
525 526 5.636543 GCATGTATCTCTTTTGCTTTGCTTT 59.363 36.000 0.00 0.00 0.00 3.51
534 535 0.455410 TGCTTTGCTTTGTTGCTCGT 59.545 45.000 0.00 0.00 0.00 4.18
539 540 4.209080 GCTTTGCTTTGTTGCTCGTTAAAT 59.791 37.500 0.00 0.00 0.00 1.40
544 545 5.344665 TGCTTTGTTGCTCGTTAAATATTGC 59.655 36.000 0.00 0.00 0.00 3.56
558 559 5.616488 AAATATTGCGTCACTTTAACGGT 57.384 34.783 0.00 0.00 40.41 4.83
564 565 2.222445 GCGTCACTTTAACGGTCATGTT 59.778 45.455 0.00 0.00 40.41 2.71
565 566 3.794536 CGTCACTTTAACGGTCATGTTG 58.205 45.455 0.00 0.00 36.51 3.33
566 567 3.363575 CGTCACTTTAACGGTCATGTTGG 60.364 47.826 0.00 0.00 36.51 3.77
568 569 4.454504 GTCACTTTAACGGTCATGTTGGAT 59.545 41.667 0.00 0.00 33.32 3.41
569 570 5.048991 GTCACTTTAACGGTCATGTTGGATT 60.049 40.000 0.00 0.00 33.32 3.01
570 571 5.533154 TCACTTTAACGGTCATGTTGGATTT 59.467 36.000 0.00 0.00 33.32 2.17
571 572 5.629020 CACTTTAACGGTCATGTTGGATTTG 59.371 40.000 0.00 0.00 33.32 2.32
572 573 5.300792 ACTTTAACGGTCATGTTGGATTTGT 59.699 36.000 0.00 0.00 33.32 2.83
573 574 6.487331 ACTTTAACGGTCATGTTGGATTTGTA 59.513 34.615 0.00 0.00 33.32 2.41
574 575 6.879276 TTAACGGTCATGTTGGATTTGTAA 57.121 33.333 0.00 0.00 33.32 2.41
575 576 5.371115 AACGGTCATGTTGGATTTGTAAG 57.629 39.130 0.00 0.00 0.00 2.34
576 577 4.394729 ACGGTCATGTTGGATTTGTAAGT 58.605 39.130 0.00 0.00 0.00 2.24
577 578 4.215399 ACGGTCATGTTGGATTTGTAAGTG 59.785 41.667 0.00 0.00 0.00 3.16
578 579 4.485163 GGTCATGTTGGATTTGTAAGTGC 58.515 43.478 0.00 0.00 0.00 4.40
579 580 4.218417 GGTCATGTTGGATTTGTAAGTGCT 59.782 41.667 0.00 0.00 0.00 4.40
614 615 0.387750 GCAAGCGCCTCCTTTCAAAG 60.388 55.000 2.29 0.00 0.00 2.77
622 623 2.357952 GCCTCCTTTCAAAGAAACACGT 59.642 45.455 0.00 0.00 0.00 4.49
624 625 4.215613 GCCTCCTTTCAAAGAAACACGTAT 59.784 41.667 0.00 0.00 0.00 3.06
625 626 5.617087 GCCTCCTTTCAAAGAAACACGTATC 60.617 44.000 0.00 0.00 0.00 2.24
626 627 5.701290 CCTCCTTTCAAAGAAACACGTATCT 59.299 40.000 0.00 0.00 0.00 1.98
627 628 6.128526 CCTCCTTTCAAAGAAACACGTATCTC 60.129 42.308 0.00 0.00 0.00 2.75
628 629 6.522054 TCCTTTCAAAGAAACACGTATCTCT 58.478 36.000 0.00 0.00 0.00 3.10
629 630 6.423905 TCCTTTCAAAGAAACACGTATCTCTG 59.576 38.462 0.00 0.00 0.00 3.35
630 631 6.423905 CCTTTCAAAGAAACACGTATCTCTGA 59.576 38.462 0.00 0.00 0.00 3.27
641 645 6.931838 ACACGTATCTCTGACATAAGGAAAA 58.068 36.000 0.00 0.00 0.00 2.29
668 672 5.864628 AAGAGAAATAACCGAACAGAAGC 57.135 39.130 0.00 0.00 0.00 3.86
672 676 0.988832 ATAACCGAACAGAAGCCCCA 59.011 50.000 0.00 0.00 0.00 4.96
767 771 0.179086 CAAGCCAAAAACCAACCGCT 60.179 50.000 0.00 0.00 0.00 5.52
896 900 3.657350 CCAATCCCCACCCACCGT 61.657 66.667 0.00 0.00 0.00 4.83
913 917 2.284331 TTCCTGCCTACCAGCCGA 60.284 61.111 0.00 0.00 40.36 5.54
932 936 2.757980 AATACCCACACCACACCGCC 62.758 60.000 0.00 0.00 0.00 6.13
986 990 4.891727 CAACCGCGGATCCCCTCG 62.892 72.222 35.90 2.28 40.17 4.63
1023 1027 2.043953 GGAAGGGGCAAGGCGATT 60.044 61.111 0.00 0.00 0.00 3.34
1026 1030 3.224007 AAGGGGCAAGGCGATTGGT 62.224 57.895 2.87 0.00 39.47 3.67
1191 1195 1.038130 AGTATCTCGCCGCTGAGGTT 61.038 55.000 10.85 4.23 43.70 3.50
1211 1215 1.202486 TCGTGGGATTCTGTTATCCGC 60.202 52.381 0.00 0.00 44.22 5.54
1231 1235 2.874086 GCTGCCTGATTTTGCTGTTTTT 59.126 40.909 0.00 0.00 0.00 1.94
1256 1261 2.289444 GGTGAATTCGAGAGGTTGGTGA 60.289 50.000 0.04 0.00 0.00 4.02
1267 1282 1.290955 GTTGGTGACCCGTCGATCA 59.709 57.895 0.00 0.00 0.00 2.92
1285 1300 0.030638 CAGTGGTTGGTTCGGCAAAG 59.969 55.000 0.00 0.00 0.00 2.77
1326 1342 4.174411 TCGGATGAGGATAATACTTGCG 57.826 45.455 0.00 0.00 0.00 4.85
1333 1349 1.792949 GGATAATACTTGCGTCTGCCG 59.207 52.381 0.00 0.00 41.78 5.69
1348 1364 0.036732 TGCCGGCTCTCAGATTTGTT 59.963 50.000 29.70 0.00 0.00 2.83
1354 1370 1.888512 GCTCTCAGATTTGTTTGGGCA 59.111 47.619 0.00 0.00 0.00 5.36
1359 1375 4.019174 CTCAGATTTGTTTGGGCATAGGT 58.981 43.478 0.00 0.00 0.00 3.08
1377 1393 3.084786 AGGTGGTTCTGCTTGCTAATTC 58.915 45.455 0.00 0.00 0.00 2.17
1386 1402 3.002791 TGCTTGCTAATTCCACTCGAAG 58.997 45.455 0.00 0.00 32.78 3.79
1566 1582 4.166011 GTCACAATCGCCAGCGGC 62.166 66.667 12.71 9.20 46.75 6.53
1667 1683 2.486548 GCTAGATGACGACTCCTCCTCT 60.487 54.545 0.00 0.00 0.00 3.69
1669 1685 1.562008 AGATGACGACTCCTCCTCTGA 59.438 52.381 0.00 0.00 0.00 3.27
1722 1738 5.217393 TGTGTAGTAGCGTGTTCAGTTAAG 58.783 41.667 0.00 0.00 0.00 1.85
1748 1764 3.244146 TGCCTAGGTGTTGCGTTTTACTA 60.244 43.478 11.31 0.00 0.00 1.82
1749 1765 3.124128 GCCTAGGTGTTGCGTTTTACTAC 59.876 47.826 11.31 0.00 0.00 2.73
1750 1766 4.563061 CCTAGGTGTTGCGTTTTACTACT 58.437 43.478 0.00 0.00 0.00 2.57
1751 1767 5.713025 CCTAGGTGTTGCGTTTTACTACTA 58.287 41.667 0.00 0.00 0.00 1.82
1801 1817 2.036604 TGAATCTGTGTGCTTGTACCGA 59.963 45.455 0.00 0.00 0.00 4.69
1835 1851 3.689649 GTGTGGACAATGGTTACATCCTC 59.310 47.826 0.00 0.00 35.94 3.71
1851 1867 5.918608 ACATCCTCTGTAATTCGTTGCTAT 58.081 37.500 0.00 0.00 35.91 2.97
1852 1868 5.755375 ACATCCTCTGTAATTCGTTGCTATG 59.245 40.000 0.00 0.00 35.91 2.23
1854 1870 5.730550 TCCTCTGTAATTCGTTGCTATGTT 58.269 37.500 0.00 0.00 0.00 2.71
1855 1871 5.810587 TCCTCTGTAATTCGTTGCTATGTTC 59.189 40.000 0.00 0.00 0.00 3.18
1857 1873 6.978659 CCTCTGTAATTCGTTGCTATGTTCTA 59.021 38.462 0.00 0.00 0.00 2.10
1858 1874 7.653713 CCTCTGTAATTCGTTGCTATGTTCTAT 59.346 37.037 0.00 0.00 0.00 1.98
1859 1875 9.678941 CTCTGTAATTCGTTGCTATGTTCTATA 57.321 33.333 0.00 0.00 0.00 1.31
1880 1898 8.205512 TCTATAAAACGTTGCACCTATGGATTA 58.794 33.333 0.00 0.00 0.00 1.75
1895 1913 7.502561 ACCTATGGATTACTTACTTGCCAATTC 59.497 37.037 0.00 0.00 0.00 2.17
1896 1914 5.811399 TGGATTACTTACTTGCCAATTCG 57.189 39.130 0.00 0.00 0.00 3.34
1898 1916 5.708230 TGGATTACTTACTTGCCAATTCGTT 59.292 36.000 0.00 0.00 0.00 3.85
1899 1917 6.027749 GGATTACTTACTTGCCAATTCGTTG 58.972 40.000 0.00 0.00 0.00 4.10
1901 1919 2.884639 ACTTACTTGCCAATTCGTTGCT 59.115 40.909 0.00 0.00 0.00 3.91
1904 1922 1.267806 ACTTGCCAATTCGTTGCTCTG 59.732 47.619 0.00 0.00 0.00 3.35
1906 1924 1.317613 TGCCAATTCGTTGCTCTGTT 58.682 45.000 0.00 0.00 0.00 3.16
1907 1925 1.266718 TGCCAATTCGTTGCTCTGTTC 59.733 47.619 0.00 0.00 0.00 3.18
1919 1950 2.106338 TGCTCTGTTCTTTCCATGGTCA 59.894 45.455 12.58 0.00 0.00 4.02
1933 1965 4.646040 TCCATGGTCAATTCTTGCCTATTG 59.354 41.667 12.58 0.00 33.96 1.90
1951 1983 6.526674 GCCTATTGTTTCATGGTTAGAAAACG 59.473 38.462 0.00 0.00 36.80 3.60
1952 1984 7.574217 GCCTATTGTTTCATGGTTAGAAAACGA 60.574 37.037 0.00 0.00 36.80 3.85
2034 2093 5.169295 GTGCTCTTCTTTACAATCCGTAGT 58.831 41.667 0.00 0.00 0.00 2.73
2051 2110 1.211969 GTTGTGCTACGGCTCGAGA 59.788 57.895 18.75 0.00 39.59 4.04
2055 2114 0.945813 GTGCTACGGCTCGAGATAGT 59.054 55.000 18.75 14.28 39.59 2.12
2112 2195 5.650543 AGTTTTTCACGAGCAAGACATTTT 58.349 33.333 0.00 0.00 0.00 1.82
2116 2199 1.001487 CACGAGCAAGACATTTTGGCA 60.001 47.619 0.00 0.00 0.00 4.92
2123 2206 3.434299 GCAAGACATTTTGGCAGGAAATG 59.566 43.478 18.48 18.48 45.47 2.32
2140 2229 1.668419 ATGCTTGCGATCTAACACCC 58.332 50.000 0.00 0.00 0.00 4.61
2173 2262 4.340617 AGGATTCCGTAAAGAAATGGCAA 58.659 39.130 0.00 0.00 0.00 4.52
2178 2267 2.823154 CCGTAAAGAAATGGCAAGGGAA 59.177 45.455 0.00 0.00 0.00 3.97
2194 2283 6.536224 GGCAAGGGAAATGAAACAATTATCAG 59.464 38.462 0.00 0.00 0.00 2.90
2199 2288 7.035612 GGGAAATGAAACAATTATCAGTCCAC 58.964 38.462 15.29 7.39 36.28 4.02
2226 2315 0.598158 AGCGCTGCACATTGTTTTGG 60.598 50.000 10.39 0.00 0.00 3.28
2340 2509 8.075574 CAGTTGAAAGTATGACAATTTACAGCA 58.924 33.333 0.00 0.00 0.00 4.41
2372 2541 3.489047 GCAAAAGTATTTGTCAAGCGCAA 59.511 39.130 11.47 0.00 46.19 4.85
2399 2568 5.859205 AAGAATCCAATGTTTATGAGCCC 57.141 39.130 0.00 0.00 0.00 5.19
2495 2690 1.097547 AACAGCAGGCAGTGTCACAC 61.098 55.000 0.00 0.00 34.10 3.82
2496 2691 1.524393 CAGCAGGCAGTGTCACACA 60.524 57.895 11.40 0.00 36.74 3.72
2505 2700 2.892374 CAGTGTCACACAGTCAGTCAA 58.108 47.619 11.40 0.00 36.74 3.18
2537 2732 2.834113 CTTCTTCCTCCCTCCCTGTTA 58.166 52.381 0.00 0.00 0.00 2.41
2573 2772 0.536460 GGGGTCAGTTTTCTTCGCCA 60.536 55.000 0.00 0.00 35.77 5.69
2631 2830 6.406370 TCTTGATCGTGAATATCACCTTTGT 58.594 36.000 5.00 0.00 44.20 2.83
2646 2845 8.877864 ATCACCTTTGTTTGTTTGATATAGGA 57.122 30.769 0.00 0.00 0.00 2.94
2647 2846 8.335532 TCACCTTTGTTTGTTTGATATAGGAG 57.664 34.615 0.00 0.00 0.00 3.69
2648 2847 7.029563 CACCTTTGTTTGTTTGATATAGGAGC 58.970 38.462 0.00 0.00 0.00 4.70
2649 2848 6.152831 ACCTTTGTTTGTTTGATATAGGAGCC 59.847 38.462 0.00 0.00 0.00 4.70
2650 2849 6.152661 CCTTTGTTTGTTTGATATAGGAGCCA 59.847 38.462 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.126734 GCAACGTGTGGCTGATGC 60.127 61.111 0.00 0.00 38.76 3.91
21 22 0.241749 AATGCAACGTGTGGCTGATG 59.758 50.000 0.43 0.00 0.00 3.07
22 23 0.241749 CAATGCAACGTGTGGCTGAT 59.758 50.000 0.43 0.00 0.00 2.90
23 24 1.653667 CAATGCAACGTGTGGCTGA 59.346 52.632 0.43 0.00 0.00 4.26
24 25 1.372004 CCAATGCAACGTGTGGCTG 60.372 57.895 0.43 0.00 0.00 4.85
25 26 1.518056 CTCCAATGCAACGTGTGGCT 61.518 55.000 0.43 0.00 0.00 4.75
26 27 1.081242 CTCCAATGCAACGTGTGGC 60.081 57.895 0.00 0.00 0.00 5.01
27 28 1.081242 GCTCCAATGCAACGTGTGG 60.081 57.895 0.00 0.00 0.00 4.17
28 29 0.311790 AAGCTCCAATGCAACGTGTG 59.688 50.000 0.00 0.00 34.99 3.82
29 30 0.593128 GAAGCTCCAATGCAACGTGT 59.407 50.000 0.00 0.00 34.99 4.49
30 31 0.592637 TGAAGCTCCAATGCAACGTG 59.407 50.000 0.00 0.00 34.99 4.49
31 32 0.593128 GTGAAGCTCCAATGCAACGT 59.407 50.000 0.00 0.00 34.99 3.99
32 33 0.109597 GGTGAAGCTCCAATGCAACG 60.110 55.000 0.00 0.00 34.99 4.10
33 34 0.109597 CGGTGAAGCTCCAATGCAAC 60.110 55.000 0.00 0.00 34.99 4.17
34 35 1.243342 CCGGTGAAGCTCCAATGCAA 61.243 55.000 0.00 0.00 34.99 4.08
35 36 1.675310 CCGGTGAAGCTCCAATGCA 60.675 57.895 0.00 0.00 34.99 3.96
36 37 1.372087 CTCCGGTGAAGCTCCAATGC 61.372 60.000 0.00 0.00 0.00 3.56
37 38 1.372087 GCTCCGGTGAAGCTCCAATG 61.372 60.000 7.92 0.00 0.00 2.82
38 39 1.078143 GCTCCGGTGAAGCTCCAAT 60.078 57.895 7.92 0.00 0.00 3.16
39 40 2.347490 GCTCCGGTGAAGCTCCAA 59.653 61.111 7.92 0.00 0.00 3.53
40 41 3.706373 GGCTCCGGTGAAGCTCCA 61.706 66.667 12.85 0.00 0.00 3.86
41 42 2.470938 AAAGGCTCCGGTGAAGCTCC 62.471 60.000 12.85 1.67 0.00 4.70
42 43 1.003233 AAAGGCTCCGGTGAAGCTC 60.003 57.895 12.85 4.24 0.00 4.09
43 44 1.302832 CAAAGGCTCCGGTGAAGCT 60.303 57.895 12.85 0.00 0.00 3.74
44 45 2.335712 CCAAAGGCTCCGGTGAAGC 61.336 63.158 7.92 6.37 0.00 3.86
45 46 1.073199 ACCAAAGGCTCCGGTGAAG 59.927 57.895 7.92 0.00 0.00 3.02
46 47 3.246687 ACCAAAGGCTCCGGTGAA 58.753 55.556 7.92 0.00 0.00 3.18
49 50 1.002134 CATCACCAAAGGCTCCGGT 60.002 57.895 0.00 2.08 0.00 5.28
50 51 1.002134 ACATCACCAAAGGCTCCGG 60.002 57.895 0.00 0.00 0.00 5.14
51 52 0.606401 ACACATCACCAAAGGCTCCG 60.606 55.000 0.00 0.00 0.00 4.63
52 53 1.270550 CAACACATCACCAAAGGCTCC 59.729 52.381 0.00 0.00 0.00 4.70
53 54 1.270550 CCAACACATCACCAAAGGCTC 59.729 52.381 0.00 0.00 0.00 4.70
54 55 1.133513 TCCAACACATCACCAAAGGCT 60.134 47.619 0.00 0.00 0.00 4.58
55 56 1.270550 CTCCAACACATCACCAAAGGC 59.729 52.381 0.00 0.00 0.00 4.35
56 57 1.270550 GCTCCAACACATCACCAAAGG 59.729 52.381 0.00 0.00 0.00 3.11
57 58 2.227388 GAGCTCCAACACATCACCAAAG 59.773 50.000 0.87 0.00 0.00 2.77
58 59 2.229792 GAGCTCCAACACATCACCAAA 58.770 47.619 0.87 0.00 0.00 3.28
59 60 1.545428 GGAGCTCCAACACATCACCAA 60.545 52.381 28.43 0.00 35.64 3.67
60 61 0.036732 GGAGCTCCAACACATCACCA 59.963 55.000 28.43 0.00 35.64 4.17
61 62 0.036732 TGGAGCTCCAACACATCACC 59.963 55.000 33.41 2.46 44.35 4.02
62 63 3.631453 TGGAGCTCCAACACATCAC 57.369 52.632 33.41 2.42 44.35 3.06
72 73 4.593864 GACGCCCGATGGAGCTCC 62.594 72.222 26.78 26.78 34.24 4.70
73 74 4.933064 CGACGCCCGATGGAGCTC 62.933 72.222 4.71 4.71 41.76 4.09
76 77 4.907034 CGACGACGCCCGATGGAG 62.907 72.222 4.79 0.00 41.76 3.86
87 88 3.335534 AAACGCAGCACCGACGAC 61.336 61.111 0.00 0.00 0.00 4.34
88 89 3.334751 CAAACGCAGCACCGACGA 61.335 61.111 0.00 0.00 0.00 4.20
89 90 3.281751 CTCAAACGCAGCACCGACG 62.282 63.158 2.96 0.00 0.00 5.12
90 91 2.551270 CTCAAACGCAGCACCGAC 59.449 61.111 2.96 0.00 0.00 4.79
91 92 3.345808 GCTCAAACGCAGCACCGA 61.346 61.111 2.96 0.00 36.82 4.69
92 93 3.300667 GAGCTCAAACGCAGCACCG 62.301 63.158 9.40 0.00 39.56 4.94
93 94 2.558313 GAGCTCAAACGCAGCACC 59.442 61.111 9.40 0.00 39.56 5.01
94 95 2.558313 GGAGCTCAAACGCAGCAC 59.442 61.111 17.19 0.00 39.56 4.40
95 96 3.043713 CGGAGCTCAAACGCAGCA 61.044 61.111 17.19 0.00 39.56 4.41
109 110 2.745884 CAATGCAACTCCGGCGGA 60.746 61.111 29.14 29.14 0.00 5.54
110 111 3.814268 CCAATGCAACTCCGGCGG 61.814 66.667 22.51 22.51 0.00 6.13
111 112 2.745884 TCCAATGCAACTCCGGCG 60.746 61.111 0.00 0.00 0.00 6.46
112 113 3.056313 GCTCCAATGCAACTCCGGC 62.056 63.158 0.00 0.00 0.00 6.13
113 114 0.962356 AAGCTCCAATGCAACTCCGG 60.962 55.000 0.00 0.00 34.99 5.14
114 115 0.883833 AAAGCTCCAATGCAACTCCG 59.116 50.000 0.00 0.00 34.99 4.63
115 116 1.670967 GCAAAGCTCCAATGCAACTCC 60.671 52.381 0.00 0.00 39.81 3.85
116 117 1.670967 GGCAAAGCTCCAATGCAACTC 60.671 52.381 13.50 0.00 41.80 3.01
117 118 0.319405 GGCAAAGCTCCAATGCAACT 59.681 50.000 13.50 0.00 41.80 3.16
118 119 0.671472 GGGCAAAGCTCCAATGCAAC 60.671 55.000 13.50 4.75 41.80 4.17
119 120 1.672898 GGGCAAAGCTCCAATGCAA 59.327 52.632 13.50 0.00 41.80 4.08
120 121 2.638354 CGGGCAAAGCTCCAATGCA 61.638 57.895 13.50 0.00 41.80 3.96
121 122 2.182537 CGGGCAAAGCTCCAATGC 59.817 61.111 5.47 5.47 39.33 3.56
122 123 1.805254 CTCGGGCAAAGCTCCAATG 59.195 57.895 0.00 0.00 0.00 2.82
123 124 2.048603 GCTCGGGCAAAGCTCCAAT 61.049 57.895 0.00 0.00 36.80 3.16
124 125 2.672996 GCTCGGGCAAAGCTCCAA 60.673 61.111 0.00 0.00 36.80 3.53
125 126 4.722700 GGCTCGGGCAAAGCTCCA 62.723 66.667 10.74 0.00 39.75 3.86
146 147 1.071605 CAGAGCTCCAACGTAGCAAC 58.928 55.000 10.93 5.06 42.62 4.17
147 148 0.679505 ACAGAGCTCCAACGTAGCAA 59.320 50.000 10.93 0.00 42.62 3.91
148 149 0.243907 GACAGAGCTCCAACGTAGCA 59.756 55.000 10.93 0.00 42.62 3.49
149 150 0.798771 CGACAGAGCTCCAACGTAGC 60.799 60.000 10.93 0.35 40.40 3.58
150 151 0.179161 CCGACAGAGCTCCAACGTAG 60.179 60.000 10.93 3.41 0.00 3.51
151 152 0.607217 TCCGACAGAGCTCCAACGTA 60.607 55.000 10.93 0.00 0.00 3.57
152 153 1.867919 CTCCGACAGAGCTCCAACGT 61.868 60.000 10.93 2.46 35.31 3.99
153 154 1.153939 CTCCGACAGAGCTCCAACG 60.154 63.158 10.93 13.01 35.31 4.10
154 155 4.900154 CTCCGACAGAGCTCCAAC 57.100 61.111 10.93 0.65 35.31 3.77
162 163 0.684535 TCCAATGCAACTCCGACAGA 59.315 50.000 0.00 0.00 0.00 3.41
163 164 1.081892 CTCCAATGCAACTCCGACAG 58.918 55.000 0.00 0.00 0.00 3.51
164 165 0.955428 GCTCCAATGCAACTCCGACA 60.955 55.000 0.00 0.00 0.00 4.35
165 166 0.674895 AGCTCCAATGCAACTCCGAC 60.675 55.000 0.00 0.00 34.99 4.79
166 167 0.036732 AAGCTCCAATGCAACTCCGA 59.963 50.000 0.00 0.00 34.99 4.55
167 168 0.449388 GAAGCTCCAATGCAACTCCG 59.551 55.000 0.00 0.00 34.99 4.63
168 169 0.449388 CGAAGCTCCAATGCAACTCC 59.551 55.000 0.00 0.00 34.99 3.85
169 170 3.984292 CGAAGCTCCAATGCAACTC 57.016 52.632 0.00 0.00 34.99 3.01
190 191 3.116531 GTAGCACCAACGGCGTCC 61.117 66.667 15.17 0.00 36.08 4.79
191 192 1.296056 AATGTAGCACCAACGGCGTC 61.296 55.000 15.17 0.00 36.08 5.19
192 193 1.302192 AATGTAGCACCAACGGCGT 60.302 52.632 6.77 6.77 36.08 5.68
193 194 1.134487 CAATGTAGCACCAACGGCG 59.866 57.895 4.80 4.80 36.08 6.46
194 195 0.958382 TCCAATGTAGCACCAACGGC 60.958 55.000 0.00 0.00 0.00 5.68
195 196 1.086696 CTCCAATGTAGCACCAACGG 58.913 55.000 0.00 0.00 0.00 4.44
196 197 0.447801 GCTCCAATGTAGCACCAACG 59.552 55.000 0.00 0.00 39.83 4.10
197 198 1.740025 GAGCTCCAATGTAGCACCAAC 59.260 52.381 0.87 0.00 42.62 3.77
198 199 1.340017 GGAGCTCCAATGTAGCACCAA 60.340 52.381 28.43 0.00 46.37 3.67
199 200 0.253044 GGAGCTCCAATGTAGCACCA 59.747 55.000 28.43 0.00 46.37 4.17
200 201 3.086733 GGAGCTCCAATGTAGCACC 57.913 57.895 28.43 0.00 42.26 5.01
201 202 3.861341 TGGAGCTCCAATGTAGCAC 57.139 52.632 33.41 2.42 44.35 4.40
216 217 2.432444 CTTTAATGCAACTCCGGTGGA 58.568 47.619 8.63 0.00 0.00 4.02
217 218 1.135402 GCTTTAATGCAACTCCGGTGG 60.135 52.381 8.63 2.00 0.00 4.61
218 219 1.812571 AGCTTTAATGCAACTCCGGTG 59.187 47.619 15.00 0.00 34.99 4.94
219 220 2.200373 AGCTTTAATGCAACTCCGGT 57.800 45.000 15.00 0.00 34.99 5.28
220 221 2.476185 CGAAGCTTTAATGCAACTCCGG 60.476 50.000 15.00 0.00 34.99 5.14
221 222 2.774007 CGAAGCTTTAATGCAACTCCG 58.226 47.619 15.00 7.12 34.99 4.63
252 253 4.451652 GAAGCTCCAACGCTGCGC 62.452 66.667 23.51 0.00 40.79 6.09
254 255 2.607892 AACGAAGCTCCAACGCTGC 61.608 57.895 0.00 0.00 40.79 5.25
255 256 1.205064 CAACGAAGCTCCAACGCTG 59.795 57.895 0.00 0.00 40.79 5.18
256 257 1.961277 CCAACGAAGCTCCAACGCT 60.961 57.895 0.00 0.00 43.31 5.07
257 258 1.959226 TCCAACGAAGCTCCAACGC 60.959 57.895 0.00 0.00 0.00 4.84
258 259 1.860078 GTCCAACGAAGCTCCAACG 59.140 57.895 0.00 0.00 0.00 4.10
259 260 1.860078 CGTCCAACGAAGCTCCAAC 59.140 57.895 0.00 0.00 46.05 3.77
260 261 1.959226 GCGTCCAACGAAGCTCCAA 60.959 57.895 3.28 0.00 46.05 3.53
261 262 2.357034 GCGTCCAACGAAGCTCCA 60.357 61.111 3.28 0.00 46.05 3.86
262 263 3.119096 GGCGTCCAACGAAGCTCC 61.119 66.667 3.28 0.00 46.05 4.70
263 264 3.479269 CGGCGTCCAACGAAGCTC 61.479 66.667 0.00 0.00 46.05 4.09
266 267 1.683790 CTTAGCGGCGTCCAACGAAG 61.684 60.000 9.37 0.00 46.05 3.79
267 268 1.735198 CTTAGCGGCGTCCAACGAA 60.735 57.895 9.37 0.00 46.05 3.85
268 269 2.126228 CTTAGCGGCGTCCAACGA 60.126 61.111 9.37 0.00 46.05 3.85
269 270 3.849953 GCTTAGCGGCGTCCAACG 61.850 66.667 9.37 0.00 45.88 4.10
270 271 2.434359 AGCTTAGCGGCGTCCAAC 60.434 61.111 9.37 0.00 37.29 3.77
271 272 2.434185 CAGCTTAGCGGCGTCCAA 60.434 61.111 9.37 0.00 37.29 3.53
278 279 1.812922 CTCCACTGCAGCTTAGCGG 60.813 63.158 15.27 0.00 46.31 5.52
279 280 2.459442 GCTCCACTGCAGCTTAGCG 61.459 63.158 15.27 0.00 37.31 4.26
280 281 1.078567 AGCTCCACTGCAGCTTAGC 60.079 57.895 21.09 21.09 45.34 3.09
285 286 0.039708 GACAAAAGCTCCACTGCAGC 60.040 55.000 15.27 0.00 37.12 5.25
286 287 1.266175 CTGACAAAAGCTCCACTGCAG 59.734 52.381 13.48 13.48 34.99 4.41
287 288 1.311859 CTGACAAAAGCTCCACTGCA 58.688 50.000 0.00 0.00 34.99 4.41
288 289 0.595095 CCTGACAAAAGCTCCACTGC 59.405 55.000 0.00 0.00 0.00 4.40
289 290 1.242076 CCCTGACAAAAGCTCCACTG 58.758 55.000 0.00 0.00 0.00 3.66
290 291 0.846693 ACCCTGACAAAAGCTCCACT 59.153 50.000 0.00 0.00 0.00 4.00
291 292 0.954452 CACCCTGACAAAAGCTCCAC 59.046 55.000 0.00 0.00 0.00 4.02
292 293 0.823356 GCACCCTGACAAAAGCTCCA 60.823 55.000 0.00 0.00 0.00 3.86
293 294 0.823356 TGCACCCTGACAAAAGCTCC 60.823 55.000 0.00 0.00 0.00 4.70
294 295 0.595095 CTGCACCCTGACAAAAGCTC 59.405 55.000 0.00 0.00 0.00 4.09
295 296 1.458639 GCTGCACCCTGACAAAAGCT 61.459 55.000 0.00 0.00 0.00 3.74
296 297 1.006922 GCTGCACCCTGACAAAAGC 60.007 57.895 0.00 0.00 0.00 3.51
297 298 0.313043 CTGCTGCACCCTGACAAAAG 59.687 55.000 0.00 0.00 0.00 2.27
298 299 1.737355 GCTGCTGCACCCTGACAAAA 61.737 55.000 11.11 0.00 39.41 2.44
299 300 2.195567 GCTGCTGCACCCTGACAAA 61.196 57.895 11.11 0.00 39.41 2.83
300 301 2.595463 GCTGCTGCACCCTGACAA 60.595 61.111 11.11 0.00 39.41 3.18
301 302 4.994471 CGCTGCTGCACCCTGACA 62.994 66.667 16.29 0.00 39.64 3.58
314 315 2.791396 ATTGCTTCAACGCAGCGCTG 62.791 55.000 32.83 32.83 41.55 5.18
315 316 2.518836 GATTGCTTCAACGCAGCGCT 62.519 55.000 16.61 2.64 41.55 5.92
316 317 2.126734 ATTGCTTCAACGCAGCGC 60.127 55.556 16.61 0.00 41.55 5.92
317 318 1.061799 GTGATTGCTTCAACGCAGCG 61.062 55.000 14.82 14.82 41.55 5.18
318 319 0.040157 TGTGATTGCTTCAACGCAGC 60.040 50.000 0.00 0.00 41.55 5.25
319 320 2.247637 CATGTGATTGCTTCAACGCAG 58.752 47.619 0.00 0.00 41.55 5.18
320 321 1.666599 GCATGTGATTGCTTCAACGCA 60.667 47.619 0.00 0.00 39.57 5.24
321 322 0.986992 GCATGTGATTGCTTCAACGC 59.013 50.000 0.00 0.00 39.57 4.84
329 330 3.561725 GGGAGTAGTAAGCATGTGATTGC 59.438 47.826 0.00 0.00 43.09 3.56
330 331 3.804325 CGGGAGTAGTAAGCATGTGATTG 59.196 47.826 0.00 0.00 0.00 2.67
331 332 3.451178 ACGGGAGTAGTAAGCATGTGATT 59.549 43.478 0.00 0.00 44.60 2.57
332 333 3.031736 ACGGGAGTAGTAAGCATGTGAT 58.968 45.455 0.00 0.00 44.60 3.06
333 334 2.165641 CACGGGAGTAGTAAGCATGTGA 59.834 50.000 0.00 0.00 44.67 3.58
334 335 2.165641 TCACGGGAGTAGTAAGCATGTG 59.834 50.000 0.00 0.00 44.67 3.21
335 336 2.165845 GTCACGGGAGTAGTAAGCATGT 59.834 50.000 0.00 0.00 44.67 3.21
336 337 2.794981 CGTCACGGGAGTAGTAAGCATG 60.795 54.545 0.00 0.00 44.67 4.06
337 338 1.404391 CGTCACGGGAGTAGTAAGCAT 59.596 52.381 0.00 0.00 44.67 3.79
338 339 0.806868 CGTCACGGGAGTAGTAAGCA 59.193 55.000 0.00 0.00 44.67 3.91
339 340 0.807496 ACGTCACGGGAGTAGTAAGC 59.193 55.000 0.35 0.00 44.67 3.09
340 341 2.227388 ACAACGTCACGGGAGTAGTAAG 59.773 50.000 0.35 0.00 44.67 2.34
341 342 2.229792 ACAACGTCACGGGAGTAGTAA 58.770 47.619 0.35 0.00 44.67 2.24
342 343 1.896220 ACAACGTCACGGGAGTAGTA 58.104 50.000 0.35 0.00 44.67 1.82
343 344 1.035139 AACAACGTCACGGGAGTAGT 58.965 50.000 0.35 0.00 44.67 2.73
344 345 1.415374 CAACAACGTCACGGGAGTAG 58.585 55.000 0.35 0.00 44.67 2.57
345 346 0.598158 GCAACAACGTCACGGGAGTA 60.598 55.000 0.35 0.00 44.67 2.59
347 348 2.604174 GGCAACAACGTCACGGGAG 61.604 63.158 0.35 0.00 0.00 4.30
348 349 2.589442 GGCAACAACGTCACGGGA 60.589 61.111 0.35 0.00 0.00 5.14
360 361 0.524414 GGTAACCGTTGGATGGCAAC 59.476 55.000 0.00 0.00 0.00 4.17
361 362 0.110678 TGGTAACCGTTGGATGGCAA 59.889 50.000 0.00 0.00 0.00 4.52
362 363 0.322098 CTGGTAACCGTTGGATGGCA 60.322 55.000 0.00 0.00 0.00 4.92
363 364 1.029947 CCTGGTAACCGTTGGATGGC 61.030 60.000 0.00 0.00 0.00 4.40
364 365 1.029947 GCCTGGTAACCGTTGGATGG 61.030 60.000 0.00 0.00 0.00 3.51
365 366 1.366111 CGCCTGGTAACCGTTGGATG 61.366 60.000 0.00 0.00 0.00 3.51
366 367 1.078708 CGCCTGGTAACCGTTGGAT 60.079 57.895 0.00 0.00 0.00 3.41
367 368 2.344500 CGCCTGGTAACCGTTGGA 59.656 61.111 0.00 0.00 0.00 3.53
368 369 3.428282 GCGCCTGGTAACCGTTGG 61.428 66.667 0.00 0.00 0.00 3.77
369 370 2.358247 AGCGCCTGGTAACCGTTG 60.358 61.111 2.29 0.00 0.00 4.10
370 371 2.358247 CAGCGCCTGGTAACCGTT 60.358 61.111 2.29 0.00 0.00 4.44
371 372 3.296709 CTCAGCGCCTGGTAACCGT 62.297 63.158 2.29 0.00 31.51 4.83
372 373 2.509336 CTCAGCGCCTGGTAACCG 60.509 66.667 2.29 0.00 31.51 4.44
373 374 2.820037 GCTCAGCGCCTGGTAACC 60.820 66.667 2.29 0.00 31.51 2.85
374 375 2.047274 TGCTCAGCGCCTGGTAAC 60.047 61.111 2.29 0.00 38.05 2.50
375 376 2.265739 CTGCTCAGCGCCTGGTAA 59.734 61.111 2.29 0.00 38.05 2.85
376 377 2.679996 TCTGCTCAGCGCCTGGTA 60.680 61.111 2.29 0.00 38.05 3.25
377 378 4.385405 GTCTGCTCAGCGCCTGGT 62.385 66.667 2.29 0.00 38.05 4.00
378 379 3.889134 TTGTCTGCTCAGCGCCTGG 62.889 63.158 2.29 0.00 38.05 4.45
379 380 2.357881 TTGTCTGCTCAGCGCCTG 60.358 61.111 2.29 1.50 38.05 4.85
380 381 2.358003 GTTGTCTGCTCAGCGCCT 60.358 61.111 2.29 0.00 38.05 5.52
381 382 2.358003 AGTTGTCTGCTCAGCGCC 60.358 61.111 2.29 0.00 38.05 6.53
382 383 2.858868 CAGTTGTCTGCTCAGCGC 59.141 61.111 0.00 0.00 34.79 5.92
390 391 1.448540 CCGGCTAGGCAGTTGTCTG 60.449 63.158 17.45 0.00 43.87 3.51
391 392 0.978146 ATCCGGCTAGGCAGTTGTCT 60.978 55.000 17.45 0.00 40.77 3.41
392 393 0.811616 CATCCGGCTAGGCAGTTGTC 60.812 60.000 17.45 0.00 40.77 3.18
393 394 1.221840 CATCCGGCTAGGCAGTTGT 59.778 57.895 17.45 0.00 40.77 3.32
394 395 0.107456 ATCATCCGGCTAGGCAGTTG 59.893 55.000 17.45 10.42 40.77 3.16
395 396 0.839946 AATCATCCGGCTAGGCAGTT 59.160 50.000 17.45 0.00 40.77 3.16
396 397 0.839946 AAATCATCCGGCTAGGCAGT 59.160 50.000 17.45 0.00 40.77 4.40
397 398 1.071385 AGAAATCATCCGGCTAGGCAG 59.929 52.381 17.45 4.95 40.77 4.85
398 399 1.131638 AGAAATCATCCGGCTAGGCA 58.868 50.000 17.45 0.00 40.77 4.75
399 400 2.262423 AAGAAATCATCCGGCTAGGC 57.738 50.000 6.15 6.15 40.77 3.93
400 401 4.873746 TCTAAGAAATCATCCGGCTAGG 57.126 45.455 0.00 0.00 42.97 3.02
401 402 7.442364 TGATTTTCTAAGAAATCATCCGGCTAG 59.558 37.037 0.00 0.00 45.90 3.42
402 403 7.279615 TGATTTTCTAAGAAATCATCCGGCTA 58.720 34.615 0.00 0.00 45.90 3.93
403 404 6.122277 TGATTTTCTAAGAAATCATCCGGCT 58.878 36.000 0.00 0.00 45.90 5.52
404 405 6.377327 TGATTTTCTAAGAAATCATCCGGC 57.623 37.500 0.00 0.00 45.90 6.13
411 412 8.425577 TCAGTCGGATGATTTTCTAAGAAATC 57.574 34.615 3.23 3.23 43.22 2.17
412 413 8.970859 ATCAGTCGGATGATTTTCTAAGAAAT 57.029 30.769 0.00 0.00 36.50 2.17
413 414 8.792830 AATCAGTCGGATGATTTTCTAAGAAA 57.207 30.769 9.39 0.00 45.44 2.52
424 425 5.734720 ACTGTTACAAATCAGTCGGATGAT 58.265 37.500 0.00 0.00 40.28 2.45
425 426 5.147330 ACTGTTACAAATCAGTCGGATGA 57.853 39.130 0.00 0.00 40.28 2.92
426 427 5.163854 GGAACTGTTACAAATCAGTCGGATG 60.164 44.000 0.00 0.00 42.95 3.51
427 428 4.935808 GGAACTGTTACAAATCAGTCGGAT 59.064 41.667 0.00 0.00 42.95 4.18
428 429 4.312443 GGAACTGTTACAAATCAGTCGGA 58.688 43.478 0.00 0.00 42.95 4.55
429 430 3.435671 GGGAACTGTTACAAATCAGTCGG 59.564 47.826 4.94 0.00 42.95 4.79
430 431 4.315803 AGGGAACTGTTACAAATCAGTCG 58.684 43.478 4.94 0.00 42.95 4.18
431 432 6.635030 AAAGGGAACTGTTACAAATCAGTC 57.365 37.500 4.94 0.00 42.95 3.51
432 433 7.418337 AAAAAGGGAACTGTTACAAATCAGT 57.582 32.000 4.94 0.00 45.21 3.41
453 454 4.430007 ACGCTAGCATAGACGATGAAAAA 58.570 39.130 16.45 0.00 42.77 1.94
454 455 4.041740 ACGCTAGCATAGACGATGAAAA 57.958 40.909 16.45 0.00 42.77 2.29
455 456 3.710326 ACGCTAGCATAGACGATGAAA 57.290 42.857 16.45 0.00 42.77 2.69
456 457 3.372060 CAACGCTAGCATAGACGATGAA 58.628 45.455 16.45 0.00 42.77 2.57
457 458 2.858646 GCAACGCTAGCATAGACGATGA 60.859 50.000 16.45 0.00 42.77 2.92
458 459 1.453524 GCAACGCTAGCATAGACGATG 59.546 52.381 16.45 3.34 42.77 3.84
459 460 1.772182 GCAACGCTAGCATAGACGAT 58.228 50.000 16.45 0.00 42.77 3.73
460 461 0.591488 CGCAACGCTAGCATAGACGA 60.591 55.000 16.45 0.00 42.77 4.20
461 462 1.840061 CGCAACGCTAGCATAGACG 59.160 57.895 16.45 7.61 42.77 4.18
474 475 1.860078 GGATACATAGCGGCGCAAC 59.140 57.895 35.02 11.37 0.00 4.17
481 482 2.725644 CGAAGGCGGATACATAGCG 58.274 57.895 0.00 0.00 0.00 4.26
495 496 3.242870 GCAAAAGAGATACATGCCCGAAG 60.243 47.826 0.00 0.00 0.00 3.79
498 499 2.292267 AGCAAAAGAGATACATGCCCG 58.708 47.619 0.00 0.00 37.73 6.13
525 526 4.152580 TGACGCAATATTTAACGAGCAACA 59.847 37.500 8.76 0.00 0.00 3.33
534 535 7.095313 TGACCGTTAAAGTGACGCAATATTTAA 60.095 33.333 0.00 0.00 39.09 1.52
539 540 3.651206 TGACCGTTAAAGTGACGCAATA 58.349 40.909 0.00 0.00 39.09 1.90
544 545 3.363575 CCAACATGACCGTTAAAGTGACG 60.364 47.826 0.00 0.00 40.05 4.35
558 559 6.403866 AAAGCACTTACAAATCCAACATGA 57.596 33.333 0.00 0.00 0.00 3.07
564 565 8.573035 CCTTAAACTAAAGCACTTACAAATCCA 58.427 33.333 0.00 0.00 0.00 3.41
565 566 7.541091 GCCTTAAACTAAAGCACTTACAAATCC 59.459 37.037 0.00 0.00 0.00 3.01
566 567 7.541091 GGCCTTAAACTAAAGCACTTACAAATC 59.459 37.037 0.00 0.00 0.00 2.17
568 569 6.513720 CGGCCTTAAACTAAAGCACTTACAAA 60.514 38.462 0.00 0.00 0.00 2.83
569 570 5.049267 CGGCCTTAAACTAAAGCACTTACAA 60.049 40.000 0.00 0.00 0.00 2.41
570 571 4.453136 CGGCCTTAAACTAAAGCACTTACA 59.547 41.667 0.00 0.00 0.00 2.41
571 572 4.142752 CCGGCCTTAAACTAAAGCACTTAC 60.143 45.833 0.00 0.00 0.00 2.34
572 573 4.004982 CCGGCCTTAAACTAAAGCACTTA 58.995 43.478 0.00 0.00 0.00 2.24
573 574 2.817844 CCGGCCTTAAACTAAAGCACTT 59.182 45.455 0.00 0.00 0.00 3.16
574 575 2.433436 CCGGCCTTAAACTAAAGCACT 58.567 47.619 0.00 0.00 0.00 4.40
575 576 1.471287 CCCGGCCTTAAACTAAAGCAC 59.529 52.381 0.00 0.00 0.00 4.40
576 577 1.828979 CCCGGCCTTAAACTAAAGCA 58.171 50.000 0.00 0.00 0.00 3.91
577 578 0.454600 GCCCGGCCTTAAACTAAAGC 59.545 55.000 0.00 0.00 0.00 3.51
578 579 1.828979 TGCCCGGCCTTAAACTAAAG 58.171 50.000 7.03 0.00 0.00 1.85
579 580 2.164338 CTTGCCCGGCCTTAAACTAAA 58.836 47.619 7.03 0.00 0.00 1.85
610 611 6.712241 ATGTCAGAGATACGTGTTTCTTTG 57.288 37.500 2.42 6.02 0.00 2.77
614 615 6.561614 TCCTTATGTCAGAGATACGTGTTTC 58.438 40.000 0.00 0.00 0.00 2.78
624 625 9.277783 CTCTTTTTCTTTTCCTTATGTCAGAGA 57.722 33.333 0.00 0.00 0.00 3.10
625 626 9.277783 TCTCTTTTTCTTTTCCTTATGTCAGAG 57.722 33.333 0.00 0.00 0.00 3.35
626 627 9.627123 TTCTCTTTTTCTTTTCCTTATGTCAGA 57.373 29.630 0.00 0.00 0.00 3.27
641 645 8.446599 TTCTGTTCGGTTATTTCTCTTTTTCT 57.553 30.769 0.00 0.00 0.00 2.52
647 651 4.254492 GGCTTCTGTTCGGTTATTTCTCT 58.746 43.478 0.00 0.00 0.00 3.10
653 657 0.988832 TGGGGCTTCTGTTCGGTTAT 59.011 50.000 0.00 0.00 0.00 1.89
654 658 0.766131 TTGGGGCTTCTGTTCGGTTA 59.234 50.000 0.00 0.00 0.00 2.85
656 660 0.537371 CTTTGGGGCTTCTGTTCGGT 60.537 55.000 0.00 0.00 0.00 4.69
751 755 1.300620 GGAGCGGTTGGTTTTTGGC 60.301 57.895 0.00 0.00 0.00 4.52
767 771 1.306141 AGATGGGAAGAGCCGTGGA 60.306 57.895 0.00 0.00 37.63 4.02
845 849 1.531748 GGATCCAATGCGAGGGGAA 59.468 57.895 6.95 0.00 33.73 3.97
896 900 1.271840 ATTCGGCTGGTAGGCAGGAA 61.272 55.000 3.29 0.13 41.44 3.36
913 917 1.302993 GCGGTGTGGTGTGGGTATT 60.303 57.895 0.00 0.00 0.00 1.89
986 990 1.067212 CGGCCATGTCTACAGTACTCC 59.933 57.143 2.24 0.00 0.00 3.85
1191 1195 1.202486 GCGGATAACAGAATCCCACGA 60.202 52.381 0.00 0.00 42.21 4.35
1231 1235 3.138304 CAACCTCTCGAATTCACCACAA 58.862 45.455 6.22 0.00 0.00 3.33
1256 1261 1.292223 CAACCACTGATCGACGGGT 59.708 57.895 0.00 0.00 0.00 5.28
1258 1263 0.320421 AACCAACCACTGATCGACGG 60.320 55.000 0.00 0.00 0.00 4.79
1264 1269 0.179004 TTGCCGAACCAACCACTGAT 60.179 50.000 0.00 0.00 0.00 2.90
1267 1282 0.395173 ACTTTGCCGAACCAACCACT 60.395 50.000 0.00 0.00 0.00 4.00
1285 1300 4.386711 CGAACCCTAGAAATATTCCCCAC 58.613 47.826 0.00 0.00 0.00 4.61
1326 1342 0.107945 AAATCTGAGAGCCGGCAGAC 60.108 55.000 31.54 19.23 43.26 3.51
1333 1349 1.203287 GCCCAAACAAATCTGAGAGCC 59.797 52.381 0.00 0.00 0.00 4.70
1348 1364 0.323360 GCAGAACCACCTATGCCCAA 60.323 55.000 0.00 0.00 32.49 4.12
1354 1370 4.510167 ATTAGCAAGCAGAACCACCTAT 57.490 40.909 0.00 0.00 0.00 2.57
1359 1375 2.819608 GTGGAATTAGCAAGCAGAACCA 59.180 45.455 0.00 0.00 0.00 3.67
1386 1402 5.465390 GGTTACTTCCAAAATTCCACAAAGC 59.535 40.000 0.00 0.00 0.00 3.51
1566 1582 1.656818 GGATGTTGGGCATGACACCG 61.657 60.000 0.00 0.00 38.06 4.94
1667 1683 3.680786 CGAGCACCCACGACCTCA 61.681 66.667 0.00 0.00 0.00 3.86
1722 1738 1.164041 ACGCAACACCTAGGCAACAC 61.164 55.000 9.30 0.00 41.41 3.32
1801 1817 4.634012 TTGTCCACACCTAGTTTAGCAT 57.366 40.909 0.00 0.00 0.00 3.79
1851 1867 6.092944 CCATAGGTGCAACGTTTTATAGAACA 59.907 38.462 0.00 0.00 38.12 3.18
1852 1868 6.314400 TCCATAGGTGCAACGTTTTATAGAAC 59.686 38.462 0.00 0.00 38.12 3.01
1854 1870 5.979993 TCCATAGGTGCAACGTTTTATAGA 58.020 37.500 0.00 0.00 38.12 1.98
1855 1871 6.861065 ATCCATAGGTGCAACGTTTTATAG 57.139 37.500 0.00 0.00 38.12 1.31
1857 1873 6.826741 AGTAATCCATAGGTGCAACGTTTTAT 59.173 34.615 0.00 0.00 38.12 1.40
1858 1874 6.174760 AGTAATCCATAGGTGCAACGTTTTA 58.825 36.000 0.00 0.00 38.12 1.52
1859 1875 5.007682 AGTAATCCATAGGTGCAACGTTTT 58.992 37.500 0.00 0.00 38.12 2.43
1863 1881 5.357257 AGTAAGTAATCCATAGGTGCAACG 58.643 41.667 0.00 0.00 38.12 4.10
1880 1898 2.884639 AGCAACGAATTGGCAAGTAAGT 59.115 40.909 5.96 4.24 36.23 2.24
1895 1913 2.095567 CCATGGAAAGAACAGAGCAACG 60.096 50.000 5.56 0.00 0.00 4.10
1896 1914 2.887152 ACCATGGAAAGAACAGAGCAAC 59.113 45.455 21.47 0.00 0.00 4.17
1898 1916 2.106338 TGACCATGGAAAGAACAGAGCA 59.894 45.455 21.47 0.00 0.00 4.26
1899 1917 2.783135 TGACCATGGAAAGAACAGAGC 58.217 47.619 21.47 0.00 0.00 4.09
1901 1919 5.634118 AGAATTGACCATGGAAAGAACAGA 58.366 37.500 21.47 0.00 0.00 3.41
1919 1950 6.610075 ACCATGAAACAATAGGCAAGAATT 57.390 33.333 0.00 0.00 0.00 2.17
1997 2030 0.710567 GAGCACACATCTCGTTGTCG 59.289 55.000 0.00 0.00 38.55 4.35
2001 2060 3.393089 AAGAAGAGCACACATCTCGTT 57.607 42.857 0.00 0.00 35.79 3.85
2005 2064 5.645497 GGATTGTAAAGAAGAGCACACATCT 59.355 40.000 0.00 0.00 0.00 2.90
2006 2065 5.446473 CGGATTGTAAAGAAGAGCACACATC 60.446 44.000 0.00 0.00 0.00 3.06
2007 2066 4.393062 CGGATTGTAAAGAAGAGCACACAT 59.607 41.667 0.00 0.00 0.00 3.21
2008 2067 3.745975 CGGATTGTAAAGAAGAGCACACA 59.254 43.478 0.00 0.00 0.00 3.72
2009 2068 3.746492 ACGGATTGTAAAGAAGAGCACAC 59.254 43.478 0.00 0.00 0.00 3.82
2034 2093 1.333931 CTATCTCGAGCCGTAGCACAA 59.666 52.381 7.81 0.00 43.56 3.33
2051 2110 5.243730 CCCGCCAAAATTCCATTATCACTAT 59.756 40.000 0.00 0.00 0.00 2.12
2055 2114 2.697751 CCCCGCCAAAATTCCATTATCA 59.302 45.455 0.00 0.00 0.00 2.15
2116 2199 3.375299 GTGTTAGATCGCAAGCATTTCCT 59.625 43.478 0.00 0.00 37.18 3.36
2123 2206 1.429148 CCGGGTGTTAGATCGCAAGC 61.429 60.000 0.00 0.00 37.18 4.01
2173 2262 6.953520 TGGACTGATAATTGTTTCATTTCCCT 59.046 34.615 0.00 0.00 0.00 4.20
2194 2283 1.143305 CAGCGCTGCTATATGTGGAC 58.857 55.000 26.68 0.00 36.40 4.02
2324 2493 7.395190 AAGAGCAATGCTGTAAATTGTCATA 57.605 32.000 14.48 0.00 39.88 2.15
2361 2530 0.737804 TCTTTTGCTTGCGCTTGACA 59.262 45.000 9.73 0.00 36.97 3.58
2372 2541 6.815142 GCTCATAAACATTGGATTCTTTTGCT 59.185 34.615 0.00 0.00 0.00 3.91
2399 2568 1.800805 AGAAAGAGATGCACCACACG 58.199 50.000 0.00 0.00 0.00 4.49
2537 2732 3.780624 CCTTAGTTAGGGCGTGCAT 57.219 52.632 0.00 0.00 40.67 3.96
2573 2772 2.346365 GAAGCCGTCGAAAGGGGT 59.654 61.111 9.84 4.07 42.73 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.