>input_sequence_72779
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-------------------------------------------ATGGCCGGAAGGGGCAAGGCGATTGGTTCGGGCGCCG
CCAAGAAGGCCATCTCCAGGAGCTCCAAGGCCGGGCTCCAGTTCCCCGTCGGCAGGATCGCGCGGTTCCTCAAGGCCGGC
AAGTACGCCGAGAGGGTCGGCGCCGGCGCCCCCGTCTACCTCGCCGCCGTGCTGGAGTATCTCGCCGCTGAGGTTCGTGG
GATTCTGTTATCCGCTGCCTGATTTTGCTGTTTTTTGTGGTGAATT-CGAGAGGTTGGTGACCCGTCGA----------T
CAGTGGTTGGTTCGGCAAAGTGGGGAATATTTCTAGGGTT-CGGATGAGGATAATACTTGCGTCTGCCGGCTCTCAGATT
TGTTTGGGCATAGGTGGTTCTGCTTGCTAATTCCACTCGAAGCTTTGTGGAATTTTGGAAGTAACCGTTGCGATTCCCTT
GTTTGTGCAGGTTCTGGAGTTGGCCGGGAACGCGGCGAGGGACAACAAGAAGACCCGCATCGTGCCGCGCCACATCCAGC
TCGCCGTCCGCAACGACGAGGAGCTCTCCCGCCTGCTCGGCATGGTCACAATCGCCAGCGGCGGTGTCATGCCCAACATC
CACAACCTTCTGCTCCCCAAGAAGGCCGGAGGCAGCAAGGCCGTGGCTGCCGACGACGATAGCTAG--------------
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>chr2B_1_TraesCS2B01G239600
GCCGCCGGCGCTGCCATGAGGCATCAGCCACACGTTGCATTGGAGCTTCACCGGAGCCTTTGGTGATGTGTTGGAGCTCC
ATCGGGCGTCGTCGGTGCTGCGTTTGAGCTCCGCCGGAGTTGCATTGGAGCTTTGCCCGAGCCGCCGTTGCTACGTTGGA
GCTCTGTCGGAGTTGCATTGGAGCTTCGCCGGACGCCGTTGGTGCTACATTGGAGCTCCACCGGAGTTGCATTAAAGCTT
CGCCGGCCGTCGGCGCAGCGTTGGAGCTTCGTTGGACGCCGCTAAGCTGCAGTGGAGCTTTTGTCAGGGTGCAGCAGCGC
TGCGTTGAAGCAATCACATGCTTACTACTCCCGTGACGTTGTTGCCATCCAACGGTTACCAGGCGCTGAGCAGACAACTG
CCTAGCCGGATGATTTCTTAGAAAATCATCCGACTGATTTGTAACAGTTCCCTTTTTTCATCGTCTATGCTAGCGTTGCG
CCGCTATGTATCCGCCTTCGGGCATGTATCTCTTTTGCTTTGCTTTGTTGCTCGTTAAATATTGCGTCACTTTAACGGTC
ATGTTGGATTTGTAAGTGCTTTAGTTTAAGGCCGGGCAAGCGCCTCCTTTCAAAGAAACACGTATCTCTGA---CATAAG
GAAAAGAAAAAGAGAAATAACCGAACAGAAGCCCCAAAGCCGGCGGCCCATAGCCGCGGAGAGCAGCTGGCGGCGTACGA
CCGACCCCGAAACGGTGAAAATCCGAGGCGGCAAGCCAAAAACCAACCGCTCCACGGCTCTTCCCATCTGACGGACAGGA
TCTCGCCGCTCGGCGCACGTAATCTCCGCCACGTCACCGATCCGCGCATTCCCCTCGCATTGGATCCCCTCGCCTATATA
ACCCAATCCCCACCCACCGTTCCTGCCTACCAGCCGAATACCCACACCACACCGCCTCCGCACTTCCTCCCGGCGCCTCG
CTTTCCATTTCACAACCGCGGATCCCCTCGGAGTACTGTAGACATGGCCGGAAGGGGCAAGGCGATTGGTTCGGGCGCCG
CCAAGAAGGCCATCTCCAGGAGCTCCAAGGCCGGGCTCCAGTTCCCCGTCGGCAGGATCGCGCGGTTCCTCAAGGCCGGC
AAGTACGCCGAGAGGGTCGGCGCCGGCGCCCCCGTCTACCTCGCCGCCGTGCTGGAGTATCTCGCCGCTGAGGTTCGTGG
GATTCTGTTATCCGCTGCCTGATTTTGCTGTTTTTTGTGGTGAATT-CGAGAGGTTGGTGACCCGTCGA----------T
CAGTGGTTGGTTCGGCAAAGTGGGGAATATTTCTAGGGTT-CGGATGAGGATAATACTTGCGTCTGCCGGCTCTCAGATT
TGTTTGGGCATAGGTGGTTCTGCTTGCTAATTCCACTCGAAGCTTTGTGGAATTTTGGAAGTAACCGTTGCGATTCCCTT
GTTTGTGCAGGTTCTGGAGTTGGCCGGGAACGCGGCGAGGGACAACAAGAAGACCCGCATCGTGCCGCGCCACATCCAGC
TCGCCGTCCGCAACGACGAGGAGCTCTCCCGCCTGCTCGGCATGGTCACAATCGCCAGCGGCGGTGTCATGCCCAACATC
CACAACCTTCTGCTCCCCAAGAAGGCCGGAGGCAGCAAGGCCGTGGCTGCCGACGACGATAGCTAGATGACGACTCCTCC
TCTGAGGTCGTGGGTGCTCGGCTGTATCCAGTTCTGTGTAGTAGCGTGTTCAGTTAAGTGTTGCCTAGGTGTTGCGTTTT
ACTACTACTAGGATGTTAGTACTACTATTAGTTTCTGAATCTGTGTGCTTGTACCGATGCTAAACTAGGTGTGGACAATG
GTTACATCCTCTGTAATTCGTTGCTATGTTCTATA--AAACGTTGCACCTATGGATTACTTACTTGCCAATTCGTTGCTC
TGTTC-------------TTTCCATGGTCAATTCTTGCCT-ATTGTTTCATGGTTAGAAAACGAGATATAGATGCGAAAT
CC-TACTAATATTAATCTGCGAAGCTGTTC--------------------------GACAACGAGATGTGTGCTCTTCTT
TACAATCCGTAGTTGTGCTACGGCTCGAGATAGTGATAATGGAATTTTGGCGGGGAGTAG----------ATGGCGAAGT
TTTTCACGAGCAAGACAT--------------TTTGGCAGGAAATGCTTGCGATCTAAC---AC---CCGGGATAAAAAA
GGATTCCGTAAAGAAATGGCAAGGGAAATGAAACAATTATCAGTCCACATATAGCAGCGCTGCACATTGTTTTGGGTGCC
CTGACTATCCAGACG-----------------------------------------ACAGCACAGCAGTGCGAATCTGGT
---------------ACATTGCAAAAGGCACACCAAGTCG------------------------CGAACACACAGGATGT
TTCAGTTGAAAGTATGACAATTTACAGCATTGCTCTTTGCAAAAGTATTTGTCAAGCGCAAGCAAAAGAATCCAATGTTT
ATGAGCCCGTGTGGTGCATCTCTTTCTTTCTAATG--------------------------CTGTATTTATTCCTCTCCT
TTCTGTGATGGTACAAATGTTAAGCGAAAAAACAGCAGGCAGTGTCACACAGTCAGTCAACCAGCCTGCTGCTTCTTCCT
CCCTCCCTGTTATGCA----CGCCCTAACTAAGGGGTCAGTTTTCTTCGCCACCCCTTTCGACGGCTTCCGTTTCGACTT
CTCCATCTTGATCGTGAATATCACCTTTGTTTGTTTGATATAGGAGCCA
>chr2D_453
TTTTCTTCACT---------------------------------------------------------------------
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--------------------------------------------------------------GTCTATGCTAGCATTGCG
CTGCTATGTATCCGCTTTTGGGCATGTATCTCTTTTGCTTTGCTTCGTTGCTCGCTAAACATTGTGTCACTTTAACGGAC
ATGTGTAAGGGCA-------TTAGTTTAAGGCCGGGCAAGCGCCTCCTTTAAAAAAAACACGCACTAGCTTTCTCATAAG
GAAATGAAAACGAGAAGCAGCCGAACAGAAGACCCGAAGCCGGCGGCCCATAGCCGCGGAGAGCAGCGGGCGGCGTACGA
CCGACCCCGAAACGGCGAAAATCCGAGGCGGCAAACCAAAAACCAACCGCCCCACGGCTCTTCCCATCTGACGGACAGGA
TCTCGCCGCTCGGCGCACGTAATCTCCGCCACGTCACCGATCCGCGCACTCCCCTCGCATTGGATCCCCTCGCCTATATA
ACCCAATCCCCACCCACCGCTCCTTCCTACCAGCCGTATACCCACACCACACCGCTTCCGCACTTCCTCCCGGCGCCTCG
CTTTCCATTTCACAACCGCGGATCCACTCCGAGTACTGTAGACATGGCCGGAAGGGGCAAGGCGATCGGCTCGGGCGCCG
CCAAGAAGGCCATCTCCAGGAGCTCCAAGGCCGGGCTCCAGTTCCCCGTCGGCAGGATCGCGCGGTTCCTCAAGGCCGGC
AAGTACGCCGAGAGGGTCGGCGCCGGCGCCCCCGTCTACCTCGCCGCCGTGCTGGAGTATCTCGCCGCTGAGGTGCGTGG
GATTATGTCATCCAATGCCTGATTTTGCTGTTTTCTGTGGTGAATTTCTAGCGGTCGGTGTCTAGTCGG----------T
CGGTGGTTGGTTCGGCAAATTGGGGAATATTTCTAGGGTTTCGGATGAGGATGATACTTGTCTCTGCCTGCTCTCAGATT
TGTCTGGGCCTAGGCGGTTCTGCTTGCTAATTGCGCTCGAAACTTTGTGGAATTTTGGAAGTAACCGTTGCGACTCCCTT
GTTTGTGCAGGTTCTGGAGTTGGCCGGGAACGCGGCGAGGGACAACAAGAAGACCCGCATCGTGCCGCGCCACATCCAGC
TCGCCGTCCGCAACGACGAGGAGCTCTCCCGCCTGCTCGGCATGGTCACAATCGCCAGCGGTGGTGTCATGCCCAACATC
CACAACCTCCTGCTCCCCAAGAAGGCCGGTGGCAGCAAGGCCGTGGCTGCCGACGACGATAGCTAGATGACGACTCCTCC
TCGGTGGTCGTGGGTGCTCGGCTGTATCCAGTTCTGTGTAGTAGCGTGTTCAGTTAAATGTTGCCTAGGTGTTGCGTTTT
ACTT---CTAGGATGGTAGTACTGCTATTAGTTTCTGAATCTGTGTGCTTGTACCGGTGCTAAACTAGCCGTGGACAATG
GTTGCATCCTTTGTAATTCGTTGTTAGTACGTTATATAAAAGTTGCACCTATGGATTGCTTACTTGCCAATTTCTACCAC
TCTGTTCTTGGTCGAAAATTTCCATCGTCTATTCTTGCCCAATTCTTTCATGGTTAGAGAACTCGATATAACTGCGAAAT
CCTTACTAAAATTAATCTGCGAAGCTGTTA--------------------------GACTAAGGA---TGCTCTCGTCTT
TACAATACGTAGGTGTGCTACGGCTCGAGTCAGGGATAATGGAATTTTGGCGGGGAGTAGTGGACTATGTGTGGCGATGT
TTTTCACGAGCAAGACAT--------------TT-GGCGGGAAATACTTGCGATCTAGTAATAC---CTGGGATAAAAAA
GGATTCTGTAAAGAAATGGCACGGGAGACGAAACAATTATCACTCCTAATATAGCAGCGCTGCACATTGTTTTGAGTGCC
CTGACTATCCAGACGGTGCAGAAACGGTAGGTACAGAT-------------CGACCACAGCACAGCAGCACGAATCTGGT
ACTAGGTCTCACGCCACATTGCAAAAGGCACACCAAGTCGCCCAGAGTATATAATCACATGACGCGAACACACAGGATGT
TTCAGTTGAAAGGATGACAATTTACAGCTTTGCTCTTTGCAAAGGTATT-ATC---------------------ATGTTT
ATGAGCCTGTGTGGTGCATCTCTTTCTTTCTAATGCTGCATTTATTCCCCTAAAAG-AATACTATATTTATTCCTCTCCT
TTCTGTGATGGTACAAATCCTAAGCGAAAAAACAGCAGGCAGTGTCACA--GTCAGTCAGCCAGCCTGCTGCTTCTTCCT
CCCTCCCTGTTCTGCACGCCCGCCCTAACTAAGGGGTCAGTTTTCTTCGCCGCCCCTTTCGACGGCTTCCGTTGCGACTT
CTCCATCTTGATCGTGAATATCACCTTTGCTTGTTTGATAGGAGCCA--
>chr2A_702
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----------------------------------------------------------------AGCCGGCGGCGTACGA
CCGACCCCGAAACGGCGAAAATCCGAGGCGGCAAACCAAAAACCAACCGCCCCAGGGCTCTTCCCATCTGACGGACAGGA
TCTCGCCGCTCGGCGCACGTAATCTCCGCCACGTCACCGATCCGCGCACTCTCCTCGCATTGGATCCCCTCGCCTATATA
ACCCAATCCCCACCCACCGCTCCTGCCTACCAGCCGTATACCCACACCACACCGCTTCCGCACTTCCTCCCGGCGCCTCG
TTTTCCATTTCACAACCGCGGATCCCCTCCAAGCACTGTAGACATGGCCGGAAGGGGCAAGGCGATCGGCTCGGGCGCTG
CCAAGAAGGCCATCTCCAGGAGCTCCAAGGCTGGGCTCCAGTTCCCCGTCGGCAGGATCGCGCGGTTCCTCAAGGCCGGC
AAGTACGCCGAGAGGGTCGGTGCCGGCGCCCCCGTCTACCTCGCCGCCGTGCTCGAGTATCTCGCCGCTGAGGTGCGTGG
AATTCTGTTACCCGATGCCCGATTTTGCTTCTTTGGGTGGTGAATT-CGAGCGGTTGGTGTCTCTTTCGGTCTCGTCAAT
CGGTGGTTGGTTCGGCAAATTGGGGAATATTTCTAGGGTTTCGGATGAGGATAACACTTGCCTCTGCCTGCTCTCAGATT
TGTCTGGGCTTAGGCGGTTCTGCTTGTTAATTGCACTCGAGACTTTGTGGAATTTTGGAAGTAACCGCTGCGATTCTCTT
GTTTGTGCAGGTTCTGGAGTTGGCCGGGAACGCGGCGAGGGACAACAAGAAGACCCGCATCGTGCCGCGCCACATCCAGC
TCGCCGTCCGCAACGACGAGGAGCTCTCCCGCCTGCTCGGCATGGTCACAATCGCCAGCGGTGGTGTCATGCCCAACATC
CACAACCTTCTGCTCCCCAAGAAGGCCGGAGGCAGCAAGGCCGTGGCTGCCGACGACGATAGCTAGATGACGACTCC---
TCGGTGGTCGTGGGTGCTCGGCTGTATCCAGTTCTGTGTAGTAGCGTGTTCAGTTAAATGTTGCCTAGGTGTTGCGTTTT
ACTT---CTAGGATGTTAGTACTACTATTAGTTTCTGAATCTGTGTGCTTGTACCGGTGCTAAACTAGGTGTGGACAATG
GTTACATCCTGTGTAAGTCGTTGCTAGTTCGTTCTATAAAAGTTGCACCTATGGATTGCTTACTTGCGAATTTCTACCAC
TCTGTTCTTGGTTGAAAATTTCCATGGTCTATTCTTGCTTAATTCTTTCATGGTTAGAAAACTCGATATAGCTGTGAAAT
ACTTACTAAAATTAATCTGTGAAGCTGTATTTTGGCATTAGTCTTGGTAACTTTTCGACTACGGA---TGTGCTTTCCTT
TACAATCCATAGGTGTGCTATGGATCGAGTTAGGGATAATGGAATTTTGGCGGGGAGTTGTGGATTTTGTATGGCCAAGT
TTTTGATGAGCCAAGACATTTGGAAACAGTGCTTAGGCGGGAAATACTTGCGATCTAAC---ACCAGCTGGGATAAAAAA
GGATTCCCTAGAGAAATGGCACGGAG-ATGAAACAATTATCACTCCAAATATAGCAGCGCTGCACATTGTTTTGAGCGCC
CTGACTATCCAGACGGTGCGGAAACGGTAGGTACAGATAGAGGAAACGAAGCGACGACAGCACAGCAGTGCGAATCTGGT
ACCAGGTCTCACTCCACATTGCAAAAGGCACACCAAGTCGCCCAGATTATAC--TCACATGACGCGAACACACAGGATGT
TTCAGTTGAAAGCATGGCAATTTACAGCGTTGCTCTTTGCAAAAGTATT-GTCAAGCGCAGGCAAAAGAATCCAATGTCT
ATGAGCCTGTGTGGTGCATCTCTTTCTTTCTAACACAC----TATTCCCCTAAAAAAAATACTGTATTTATTCCTCTCCT
TTCTGTGATGGTACAAATGCTAAGCGAAAAAACAGCAGGCAGTGTCAGA--GTCAGTCAGCCAGCCTGCTGCTTCTTCCT
CCCTCCCTGTTCTGCACGCCCGCCCTAACTAAGGGGTCAGTTTTCTTCGCCGCCCCTTTCGACGGCTTCCGTTTCGACTT
CTCCATCTTGATCATGAATATCACCTTTGCTTGTTTGATAGGAGCCA--
>SNPs
SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-----
-S-------------S--S--------------------------S--------S----S----S-------------S-
----SSS-SSSSSSSSSSSS------------------------------S---S-------S-SSSSSSS---------
----S-----S-----SS-S-----------S---S-------------------------------S------------
---------------S------------------S---------------S-----------------------------
------------------------------------------------S-------------------------------
-------------------S----------------S------------------S------------------------
-----------------------------S------------------------------------S--S----------
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--------------------------------------------------------------------------S-----
--------------S-------------------S----------------S--------S-S-----S-----------
-S-----------------S-----------------------------------------S------S-----------
---S-----S----S-----------------S--------S--------------------------------------
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-------------------------------------------------------------S------------------
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--S-S----------------------------------------------------S----------------------
---SSSS-------------------------------------------------S-----------------------
----------S---------------SS-SS-SSS-----S----------------S--------------SS-SS-S-
-S-SS------------------------S--------------S-----------------SS-------S--------
---------S-------------------S-----------------------------S---SSSSS------------
------------S----------------S---S----------------------------------------------
----------------------------------S---S------S----------------------S-----------
---------------------S----S---------------S----S--------------------------S-----
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------------S---------------S--------------------S----------S-------------------
-------S------------------------------------------------------------------------
-------------------S-----------------------------SS--------S--------------------
-----------S---------------------------------------S----------------------------
-----------------------------S----------SSS-SSSSS
>forward_80
------------------------------------------------------------TGGTGATGTGTTGGAGCTCC
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>reverse_1342
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-------------------------------------------------------------GTCTGCCGGCTCTCAGATT
T-------------------------------------------------------------------------------
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>forward_1300
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CAGTGGTTGGTTCGGCAAAG------------------------------------------------------------
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>reverse_2530
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-------------------------------------------------TGTCAAGCGCAAGCAAAAGA-----------
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