Multiple sequence alignment - TraesCS2B01G232400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G232400 chr2B 100.000 3746 0 0 1 3746 229995392 229991647 0.000000e+00 6918.0
1 TraesCS2B01G232400 chr2B 96.599 147 5 0 54 200 231611451 231611305 1.040000e-60 244.0
2 TraesCS2B01G232400 chr2B 96.491 57 2 0 1 57 231620097 231620041 1.110000e-15 95.3
3 TraesCS2B01G232400 chr2D 94.301 2720 69 24 354 3007 168233954 168236653 0.000000e+00 4085.0
4 TraesCS2B01G232400 chr2D 94.673 413 22 0 3000 3412 124470466 124470054 3.150000e-180 641.0
5 TraesCS2B01G232400 chr2D 94.802 404 20 1 3005 3407 638443542 638443945 2.460000e-176 628.0
6 TraesCS2B01G232400 chr2D 96.377 138 5 0 3408 3545 168236646 168236783 1.050000e-55 228.0
7 TraesCS2B01G232400 chr2A 94.157 2704 75 33 354 3007 182311881 182309211 0.000000e+00 4041.0
8 TraesCS2B01G232400 chr2A 98.492 199 3 0 3408 3606 182309218 182309020 5.950000e-93 351.0
9 TraesCS2B01G232400 chr4A 89.942 1541 114 24 1102 2624 613667356 613668873 0.000000e+00 1949.0
10 TraesCS2B01G232400 chr5D 90.620 1354 97 22 1293 2628 556154727 556153386 0.000000e+00 1770.0
11 TraesCS2B01G232400 chr5D 95.990 399 16 0 3008 3406 255469497 255469895 0.000000e+00 649.0
12 TraesCS2B01G232400 chr5D 95.012 401 20 0 3007 3407 460404042 460403642 6.830000e-177 630.0
13 TraesCS2B01G232400 chr7B 95.990 399 16 0 3008 3406 562990129 562990527 0.000000e+00 649.0
14 TraesCS2B01G232400 chr7B 97.458 118 2 1 232 349 186866076 186866192 2.280000e-47 200.0
15 TraesCS2B01G232400 chr7B 94.318 88 5 0 3659 3746 711363457 711363544 6.530000e-28 135.0
16 TraesCS2B01G232400 chr3D 96.134 388 15 0 3007 3394 458184295 458183908 5.280000e-178 634.0
17 TraesCS2B01G232400 chr7D 94.987 399 20 0 3008 3406 230445090 230444692 8.830000e-176 627.0
18 TraesCS2B01G232400 chr7D 95.868 121 2 2 232 352 214334994 214334877 3.820000e-45 193.0
19 TraesCS2B01G232400 chr6D 94.987 399 20 0 3008 3406 30009910 30010308 8.830000e-176 627.0
20 TraesCS2B01G232400 chr6D 93.258 89 6 0 3658 3746 426282106 426282018 8.440000e-27 132.0
21 TraesCS2B01G232400 chr1D 94.335 406 22 1 3002 3406 144940371 144940776 4.110000e-174 621.0
22 TraesCS2B01G232400 chr1D 92.135 89 7 0 3658 3746 386156828 386156740 3.930000e-25 126.0
23 TraesCS2B01G232400 chr3B 94.416 197 11 0 2 198 20572265 20572461 1.690000e-78 303.0
24 TraesCS2B01G232400 chr3B 85.787 197 19 4 2 198 7280814 7281001 2.280000e-47 200.0
25 TraesCS2B01G232400 chr3B 93.182 88 6 0 3659 3746 15806624 15806537 3.040000e-26 130.0
26 TraesCS2B01G232400 chr3B 93.182 88 6 0 3659 3746 217773168 217773255 3.040000e-26 130.0
27 TraesCS2B01G232400 chr6A 91.584 202 16 1 1 201 609642658 609642859 1.020000e-70 278.0
28 TraesCS2B01G232400 chr6A 85.246 183 25 2 5 186 53235745 53235564 1.780000e-43 187.0
29 TraesCS2B01G232400 chr7A 95.276 127 3 2 232 358 226718858 226718735 8.210000e-47 198.0
30 TraesCS2B01G232400 chr5B 91.919 99 7 1 3648 3746 684616612 684616515 1.810000e-28 137.0
31 TraesCS2B01G232400 chr6B 94.318 88 5 0 3659 3746 708819576 708819489 6.530000e-28 135.0
32 TraesCS2B01G232400 chr6B 94.318 88 5 0 3659 3746 718252359 718252272 6.530000e-28 135.0
33 TraesCS2B01G232400 chr4B 92.135 89 7 0 3658 3746 652907713 652907625 3.930000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G232400 chr2B 229991647 229995392 3745 True 6918.0 6918 100.0000 1 3746 1 chr2B.!!$R1 3745
1 TraesCS2B01G232400 chr2D 168233954 168236783 2829 False 2156.5 4085 95.3390 354 3545 2 chr2D.!!$F2 3191
2 TraesCS2B01G232400 chr2A 182309020 182311881 2861 True 2196.0 4041 96.3245 354 3606 2 chr2A.!!$R1 3252
3 TraesCS2B01G232400 chr4A 613667356 613668873 1517 False 1949.0 1949 89.9420 1102 2624 1 chr4A.!!$F1 1522
4 TraesCS2B01G232400 chr5D 556153386 556154727 1341 True 1770.0 1770 90.6200 1293 2628 1 chr5D.!!$R2 1335

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.038166 TGGATGGTCAGCCTCCAAAC 59.962 55.0 6.81 0.0 38.35 2.93 F
1281 1334 0.036952 AGCAGGTGTTCATCTCGGTG 60.037 55.0 0.00 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 1889 1.292242 AGGATGGAGTAGCAGAGGGAA 59.708 52.381 0.00 0.0 0.00 3.97 R
3254 3359 0.039978 CAGAGATAGGCGCTACACGG 60.040 60.000 7.64 0.0 43.93 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.988010 TCACAAATGAGATCGGAGGG 57.012 50.000 0.00 0.00 0.00 4.30
21 22 1.134401 TCACAAATGAGATCGGAGGGC 60.134 52.381 0.00 0.00 0.00 5.19
22 23 0.179073 ACAAATGAGATCGGAGGGCG 60.179 55.000 0.00 0.00 0.00 6.13
23 24 0.179073 CAAATGAGATCGGAGGGCGT 60.179 55.000 0.00 0.00 0.00 5.68
24 25 0.179073 AAATGAGATCGGAGGGCGTG 60.179 55.000 0.00 0.00 0.00 5.34
25 26 2.032860 AATGAGATCGGAGGGCGTGG 62.033 60.000 0.00 0.00 0.00 4.94
26 27 3.917760 GAGATCGGAGGGCGTGGG 61.918 72.222 0.00 0.00 0.00 4.61
27 28 4.458829 AGATCGGAGGGCGTGGGA 62.459 66.667 0.00 0.00 0.00 4.37
28 29 3.917760 GATCGGAGGGCGTGGGAG 61.918 72.222 0.00 0.00 0.00 4.30
29 30 4.458829 ATCGGAGGGCGTGGGAGA 62.459 66.667 0.00 0.00 0.00 3.71
30 31 3.976490 ATCGGAGGGCGTGGGAGAA 62.976 63.158 0.00 0.00 0.00 2.87
31 32 4.148825 CGGAGGGCGTGGGAGAAG 62.149 72.222 0.00 0.00 0.00 2.85
32 33 3.787001 GGAGGGCGTGGGAGAAGG 61.787 72.222 0.00 0.00 0.00 3.46
33 34 4.475135 GAGGGCGTGGGAGAAGGC 62.475 72.222 0.00 0.00 0.00 4.35
41 42 4.516195 GGGAGAAGGCGGCGACTC 62.516 72.222 19.24 22.52 0.00 3.36
42 43 4.516195 GGAGAAGGCGGCGACTCC 62.516 72.222 29.33 29.33 41.31 3.85
66 67 0.382515 GAGAACTCTCCCCATCGTCG 59.617 60.000 0.00 0.00 37.02 5.12
67 68 0.323542 AGAACTCTCCCCATCGTCGT 60.324 55.000 0.00 0.00 0.00 4.34
68 69 0.100861 GAACTCTCCCCATCGTCGTC 59.899 60.000 0.00 0.00 0.00 4.20
69 70 1.321074 AACTCTCCCCATCGTCGTCC 61.321 60.000 0.00 0.00 0.00 4.79
70 71 2.827190 TCTCCCCATCGTCGTCCG 60.827 66.667 0.00 0.00 38.13 4.79
71 72 4.570663 CTCCCCATCGTCGTCCGC 62.571 72.222 0.00 0.00 36.19 5.54
75 76 4.470170 CCATCGTCGTCCGCGTCA 62.470 66.667 4.92 0.00 39.49 4.35
76 77 2.277949 CATCGTCGTCCGCGTCAT 60.278 61.111 4.92 0.00 39.49 3.06
77 78 2.024305 ATCGTCGTCCGCGTCATC 59.976 61.111 4.92 0.00 39.49 2.92
78 79 2.470362 ATCGTCGTCCGCGTCATCT 61.470 57.895 4.92 0.00 39.49 2.90
79 80 1.989966 ATCGTCGTCCGCGTCATCTT 61.990 55.000 4.92 0.00 39.49 2.40
80 81 2.215604 CGTCGTCCGCGTCATCTTC 61.216 63.158 4.92 0.00 39.49 2.87
81 82 2.099638 TCGTCCGCGTCATCTTCG 59.900 61.111 4.92 0.00 39.49 3.79
82 83 2.202440 CGTCCGCGTCATCTTCGT 60.202 61.111 4.92 0.00 0.00 3.85
83 84 2.215604 CGTCCGCGTCATCTTCGTC 61.216 63.158 4.92 0.00 0.00 4.20
84 85 1.154093 GTCCGCGTCATCTTCGTCA 60.154 57.895 4.92 0.00 0.00 4.35
85 86 1.134530 GTCCGCGTCATCTTCGTCAG 61.135 60.000 4.92 0.00 0.00 3.51
86 87 1.136774 CCGCGTCATCTTCGTCAGA 59.863 57.895 4.92 0.00 35.33 3.27
87 88 1.134530 CCGCGTCATCTTCGTCAGAC 61.135 60.000 4.92 0.00 32.83 3.51
88 89 0.179187 CGCGTCATCTTCGTCAGACT 60.179 55.000 0.00 0.00 32.83 3.24
89 90 1.540407 GCGTCATCTTCGTCAGACTC 58.460 55.000 0.00 0.00 32.83 3.36
90 91 1.804062 CGTCATCTTCGTCAGACTCG 58.196 55.000 0.00 0.00 32.83 4.18
91 92 1.530031 CGTCATCTTCGTCAGACTCGG 60.530 57.143 0.00 0.00 32.83 4.63
92 93 0.452184 TCATCTTCGTCAGACTCGGC 59.548 55.000 0.00 0.00 32.83 5.54
93 94 0.863538 CATCTTCGTCAGACTCGGCG 60.864 60.000 0.00 0.00 32.83 6.46
94 95 1.025113 ATCTTCGTCAGACTCGGCGA 61.025 55.000 10.14 10.14 32.83 5.54
95 96 1.226156 CTTCGTCAGACTCGGCGAG 60.226 63.158 33.42 33.42 34.78 5.03
96 97 1.636570 CTTCGTCAGACTCGGCGAGA 61.637 60.000 40.35 18.08 34.78 4.04
141 142 3.974757 CGATCCCCCGCGGTAGAC 61.975 72.222 26.12 12.94 0.00 2.59
164 165 4.477975 CGTCGCAGTCGGAGGGAC 62.478 72.222 8.88 8.88 46.45 4.46
198 199 4.925861 GCCCGAGCTGCCCTCATC 62.926 72.222 0.00 0.00 40.78 2.92
199 200 4.247380 CCCGAGCTGCCCTCATCC 62.247 72.222 0.00 0.00 40.78 3.51
200 201 4.247380 CCGAGCTGCCCTCATCCC 62.247 72.222 0.00 0.00 40.78 3.85
201 202 3.160047 CGAGCTGCCCTCATCCCT 61.160 66.667 0.00 0.00 40.78 4.20
202 203 2.828145 GAGCTGCCCTCATCCCTC 59.172 66.667 0.00 0.00 40.45 4.30
203 204 1.765657 GAGCTGCCCTCATCCCTCT 60.766 63.158 0.00 0.00 40.45 3.69
204 205 1.757423 GAGCTGCCCTCATCCCTCTC 61.757 65.000 0.00 0.00 40.45 3.20
205 206 2.817056 GCTGCCCTCATCCCTCTCC 61.817 68.421 0.00 0.00 0.00 3.71
206 207 1.074623 CTGCCCTCATCCCTCTCCT 60.075 63.158 0.00 0.00 0.00 3.69
207 208 0.693767 CTGCCCTCATCCCTCTCCTT 60.694 60.000 0.00 0.00 0.00 3.36
208 209 0.642156 TGCCCTCATCCCTCTCCTTA 59.358 55.000 0.00 0.00 0.00 2.69
209 210 1.009552 TGCCCTCATCCCTCTCCTTAA 59.990 52.381 0.00 0.00 0.00 1.85
210 211 2.343625 GCCCTCATCCCTCTCCTTAAT 58.656 52.381 0.00 0.00 0.00 1.40
211 212 3.116356 TGCCCTCATCCCTCTCCTTAATA 60.116 47.826 0.00 0.00 0.00 0.98
212 213 3.910627 GCCCTCATCCCTCTCCTTAATAA 59.089 47.826 0.00 0.00 0.00 1.40
213 214 4.351111 GCCCTCATCCCTCTCCTTAATAAA 59.649 45.833 0.00 0.00 0.00 1.40
214 215 5.746361 GCCCTCATCCCTCTCCTTAATAAAC 60.746 48.000 0.00 0.00 0.00 2.01
215 216 5.608860 CCCTCATCCCTCTCCTTAATAAACT 59.391 44.000 0.00 0.00 0.00 2.66
216 217 6.465035 CCCTCATCCCTCTCCTTAATAAACTG 60.465 46.154 0.00 0.00 0.00 3.16
217 218 6.327626 CCTCATCCCTCTCCTTAATAAACTGA 59.672 42.308 0.00 0.00 0.00 3.41
218 219 7.017056 CCTCATCCCTCTCCTTAATAAACTGAT 59.983 40.741 0.00 0.00 0.00 2.90
219 220 7.739825 TCATCCCTCTCCTTAATAAACTGATG 58.260 38.462 0.00 0.00 0.00 3.07
220 221 7.568738 TCATCCCTCTCCTTAATAAACTGATGA 59.431 37.037 0.00 0.00 33.40 2.92
221 222 7.125792 TCCCTCTCCTTAATAAACTGATGAC 57.874 40.000 0.00 0.00 0.00 3.06
222 223 6.903534 TCCCTCTCCTTAATAAACTGATGACT 59.096 38.462 0.00 0.00 0.00 3.41
223 224 7.070074 TCCCTCTCCTTAATAAACTGATGACTC 59.930 40.741 0.00 0.00 0.00 3.36
224 225 7.147655 CCCTCTCCTTAATAAACTGATGACTCA 60.148 40.741 0.00 0.00 0.00 3.41
225 226 8.260818 CCTCTCCTTAATAAACTGATGACTCAA 58.739 37.037 0.00 0.00 0.00 3.02
226 227 9.311916 CTCTCCTTAATAAACTGATGACTCAAG 57.688 37.037 0.00 0.00 0.00 3.02
227 228 8.260818 TCTCCTTAATAAACTGATGACTCAAGG 58.739 37.037 0.00 0.00 0.00 3.61
228 229 7.918076 TCCTTAATAAACTGATGACTCAAGGT 58.082 34.615 0.00 0.00 0.00 3.50
229 230 7.824289 TCCTTAATAAACTGATGACTCAAGGTG 59.176 37.037 0.00 0.00 0.00 4.00
230 231 5.886960 AATAAACTGATGACTCAAGGTGC 57.113 39.130 0.00 0.00 0.00 5.01
231 232 3.498774 AAACTGATGACTCAAGGTGCT 57.501 42.857 0.00 0.00 0.00 4.40
232 233 2.469274 ACTGATGACTCAAGGTGCTG 57.531 50.000 0.00 0.00 0.00 4.41
233 234 1.002888 ACTGATGACTCAAGGTGCTGG 59.997 52.381 0.00 0.00 0.00 4.85
234 235 1.277273 CTGATGACTCAAGGTGCTGGA 59.723 52.381 0.00 0.00 0.00 3.86
235 236 1.911357 TGATGACTCAAGGTGCTGGAT 59.089 47.619 0.00 0.00 0.00 3.41
236 237 2.286872 GATGACTCAAGGTGCTGGATG 58.713 52.381 0.00 0.00 0.00 3.51
237 238 0.325933 TGACTCAAGGTGCTGGATGG 59.674 55.000 0.00 0.00 0.00 3.51
238 239 0.326264 GACTCAAGGTGCTGGATGGT 59.674 55.000 0.00 0.00 0.00 3.55
239 240 0.326264 ACTCAAGGTGCTGGATGGTC 59.674 55.000 0.00 0.00 0.00 4.02
240 241 0.325933 CTCAAGGTGCTGGATGGTCA 59.674 55.000 0.00 0.00 0.00 4.02
241 242 0.325933 TCAAGGTGCTGGATGGTCAG 59.674 55.000 0.00 0.00 37.79 3.51
247 248 3.731547 CTGGATGGTCAGCCTCCA 58.268 61.111 6.81 0.54 38.70 3.86
248 249 1.993653 CTGGATGGTCAGCCTCCAA 59.006 57.895 6.81 0.00 39.70 3.53
249 250 0.329261 CTGGATGGTCAGCCTCCAAA 59.671 55.000 6.81 0.00 39.70 3.28
250 251 0.038166 TGGATGGTCAGCCTCCAAAC 59.962 55.000 6.81 0.00 38.35 2.93
251 252 0.038166 GGATGGTCAGCCTCCAAACA 59.962 55.000 0.00 0.00 38.52 2.83
252 253 1.341383 GGATGGTCAGCCTCCAAACAT 60.341 52.381 0.00 0.00 38.52 2.71
253 254 2.092429 GGATGGTCAGCCTCCAAACATA 60.092 50.000 0.00 0.00 38.52 2.29
254 255 3.435601 GGATGGTCAGCCTCCAAACATAT 60.436 47.826 0.00 0.00 38.52 1.78
255 256 3.737559 TGGTCAGCCTCCAAACATATT 57.262 42.857 0.00 0.00 35.27 1.28
256 257 3.620488 TGGTCAGCCTCCAAACATATTC 58.380 45.455 0.00 0.00 35.27 1.75
257 258 3.010027 TGGTCAGCCTCCAAACATATTCA 59.990 43.478 0.00 0.00 35.27 2.57
258 259 4.210331 GGTCAGCCTCCAAACATATTCAT 58.790 43.478 0.00 0.00 0.00 2.57
259 260 4.037208 GGTCAGCCTCCAAACATATTCATG 59.963 45.833 0.00 0.00 38.21 3.07
260 261 4.883585 GTCAGCCTCCAAACATATTCATGA 59.116 41.667 0.00 0.00 35.96 3.07
261 262 5.008415 GTCAGCCTCCAAACATATTCATGAG 59.992 44.000 0.00 0.00 35.96 2.90
262 263 4.277672 CAGCCTCCAAACATATTCATGAGG 59.722 45.833 0.00 0.00 35.96 3.86
263 264 3.571401 GCCTCCAAACATATTCATGAGGG 59.429 47.826 0.00 0.00 35.96 4.30
264 265 3.571401 CCTCCAAACATATTCATGAGGGC 59.429 47.826 0.00 0.00 35.96 5.19
265 266 3.213506 TCCAAACATATTCATGAGGGCG 58.786 45.455 0.00 0.00 35.96 6.13
266 267 2.951642 CCAAACATATTCATGAGGGCGT 59.048 45.455 0.00 0.00 35.96 5.68
267 268 3.381272 CCAAACATATTCATGAGGGCGTT 59.619 43.478 0.00 0.00 35.96 4.84
268 269 4.498009 CCAAACATATTCATGAGGGCGTTC 60.498 45.833 0.00 0.00 35.96 3.95
269 270 2.483876 ACATATTCATGAGGGCGTTCG 58.516 47.619 0.00 0.00 35.96 3.95
270 271 2.102420 ACATATTCATGAGGGCGTTCGA 59.898 45.455 0.00 0.00 35.96 3.71
271 272 2.509052 TATTCATGAGGGCGTTCGAG 57.491 50.000 0.00 0.00 0.00 4.04
272 273 0.824109 ATTCATGAGGGCGTTCGAGA 59.176 50.000 0.00 0.00 0.00 4.04
273 274 0.108804 TTCATGAGGGCGTTCGAGAC 60.109 55.000 0.00 0.00 0.00 3.36
274 275 0.965866 TCATGAGGGCGTTCGAGACT 60.966 55.000 0.00 0.00 0.00 3.24
275 276 0.803768 CATGAGGGCGTTCGAGACTG 60.804 60.000 0.00 0.00 0.00 3.51
276 277 2.507324 GAGGGCGTTCGAGACTGC 60.507 66.667 0.00 0.00 0.00 4.40
277 278 2.992114 AGGGCGTTCGAGACTGCT 60.992 61.111 0.00 0.00 0.00 4.24
278 279 2.811317 GGGCGTTCGAGACTGCTG 60.811 66.667 0.00 0.00 0.00 4.41
279 280 3.482783 GGCGTTCGAGACTGCTGC 61.483 66.667 0.00 0.00 0.00 5.25
280 281 3.482783 GCGTTCGAGACTGCTGCC 61.483 66.667 0.00 0.00 0.00 4.85
281 282 2.811317 CGTTCGAGACTGCTGCCC 60.811 66.667 0.00 0.00 0.00 5.36
282 283 2.343758 GTTCGAGACTGCTGCCCA 59.656 61.111 0.00 0.00 0.00 5.36
283 284 1.301716 GTTCGAGACTGCTGCCCAA 60.302 57.895 0.00 0.00 0.00 4.12
284 285 1.004560 TTCGAGACTGCTGCCCAAG 60.005 57.895 0.00 0.00 0.00 3.61
285 286 1.471829 TTCGAGACTGCTGCCCAAGA 61.472 55.000 0.00 0.00 0.00 3.02
286 287 1.220206 CGAGACTGCTGCCCAAGAT 59.780 57.895 0.00 0.00 0.00 2.40
287 288 1.088340 CGAGACTGCTGCCCAAGATG 61.088 60.000 0.00 0.00 0.00 2.90
288 289 1.375098 GAGACTGCTGCCCAAGATGC 61.375 60.000 0.00 0.00 0.00 3.91
289 290 1.676635 GACTGCTGCCCAAGATGCA 60.677 57.895 0.00 0.00 37.17 3.96
294 295 2.758434 TGCCCAAGATGCAGCTGA 59.242 55.556 20.43 2.70 34.05 4.26
295 296 1.075305 TGCCCAAGATGCAGCTGAA 59.925 52.632 20.43 7.68 34.05 3.02
296 297 0.323999 TGCCCAAGATGCAGCTGAAT 60.324 50.000 20.43 14.00 34.05 2.57
297 298 0.102481 GCCCAAGATGCAGCTGAATG 59.898 55.000 20.43 1.63 0.00 2.67
298 299 1.758936 CCCAAGATGCAGCTGAATGA 58.241 50.000 20.43 0.00 0.00 2.57
299 300 2.307768 CCCAAGATGCAGCTGAATGAT 58.692 47.619 20.43 0.00 0.00 2.45
300 301 2.693591 CCCAAGATGCAGCTGAATGATT 59.306 45.455 20.43 6.92 0.00 2.57
301 302 3.490933 CCCAAGATGCAGCTGAATGATTG 60.491 47.826 20.43 18.40 0.00 2.67
302 303 3.130516 CCAAGATGCAGCTGAATGATTGT 59.869 43.478 20.43 0.00 0.00 2.71
303 304 4.381612 CCAAGATGCAGCTGAATGATTGTT 60.382 41.667 20.43 0.00 0.00 2.83
304 305 4.634184 AGATGCAGCTGAATGATTGTTC 57.366 40.909 20.43 0.00 0.00 3.18
305 306 4.014406 AGATGCAGCTGAATGATTGTTCA 58.986 39.130 20.43 1.35 36.70 3.18
306 307 4.461431 AGATGCAGCTGAATGATTGTTCAA 59.539 37.500 20.43 0.00 37.63 2.69
307 308 4.168922 TGCAGCTGAATGATTGTTCAAG 57.831 40.909 20.43 0.00 37.63 3.02
308 309 3.057104 TGCAGCTGAATGATTGTTCAAGG 60.057 43.478 20.43 0.00 37.63 3.61
309 310 3.192001 GCAGCTGAATGATTGTTCAAGGA 59.808 43.478 20.43 0.00 37.63 3.36
310 311 4.321452 GCAGCTGAATGATTGTTCAAGGAA 60.321 41.667 20.43 0.00 37.63 3.36
311 312 5.159209 CAGCTGAATGATTGTTCAAGGAAC 58.841 41.667 8.42 2.25 42.26 3.62
312 313 5.048224 CAGCTGAATGATTGTTCAAGGAACT 60.048 40.000 8.42 0.00 42.39 3.01
331 332 8.943909 AGGAACTTCTTTACGGATTATACTTG 57.056 34.615 0.00 0.00 27.25 3.16
332 333 8.537858 AGGAACTTCTTTACGGATTATACTTGT 58.462 33.333 0.00 0.00 27.25 3.16
333 334 9.807649 GGAACTTCTTTACGGATTATACTTGTA 57.192 33.333 0.00 0.00 0.00 2.41
530 531 4.324254 CCTGGAAAGGGTAGCAAAGATACA 60.324 45.833 0.00 0.00 0.00 2.29
557 560 3.086282 CCCCTAAAACAATAGCAACGGT 58.914 45.455 0.00 0.00 0.00 4.83
874 902 3.754976 ACACCCCCTCCCATATTCTAAA 58.245 45.455 0.00 0.00 0.00 1.85
903 931 3.056250 GTGACTGGATCTCACATGTGTCT 60.056 47.826 24.63 11.00 38.36 3.41
1063 1116 3.033909 TGAGCAGCCAAGATAAGCTAGA 58.966 45.455 0.00 0.00 37.18 2.43
1075 1128 0.397941 AAGCTAGAGGCAAGCACACA 59.602 50.000 8.84 0.00 42.62 3.72
1076 1129 0.321122 AGCTAGAGGCAAGCACACAC 60.321 55.000 8.84 0.00 42.62 3.82
1281 1334 0.036952 AGCAGGTGTTCATCTCGGTG 60.037 55.000 0.00 0.00 0.00 4.94
1473 1535 2.048503 CCGGCGTCCTCGTTCTTT 60.049 61.111 6.01 0.00 39.49 2.52
1818 1880 1.674817 CGGAACATGTACCTGTGGACC 60.675 57.143 4.44 8.06 0.00 4.46
1827 1889 3.314331 CTGTGGACCTCCGTGCCT 61.314 66.667 0.00 0.00 39.43 4.75
2689 2762 3.795623 ACAGCGACCTCGTGTAATTAT 57.204 42.857 0.00 0.00 42.22 1.28
2716 2789 2.151202 CTGCGGGTTGATGTACAAAGT 58.849 47.619 0.00 0.00 40.36 2.66
2717 2790 2.552315 CTGCGGGTTGATGTACAAAGTT 59.448 45.455 0.00 0.00 40.36 2.66
2718 2791 3.741249 TGCGGGTTGATGTACAAAGTTA 58.259 40.909 0.00 0.00 40.36 2.24
2781 2870 2.983907 TACTGAACCCAACACGTGAA 57.016 45.000 25.01 0.00 0.00 3.18
2785 2874 2.422127 CTGAACCCAACACGTGAAAACT 59.578 45.455 25.01 1.23 0.00 2.66
2786 2875 3.607741 TGAACCCAACACGTGAAAACTA 58.392 40.909 25.01 0.00 0.00 2.24
2812 2901 7.016153 AGTACTATGGTCCTGAACATTTTCA 57.984 36.000 2.54 0.00 39.80 2.69
2846 2938 9.196552 GGATTCAATTATTATAAAACAGCTGGC 57.803 33.333 19.93 0.00 0.00 4.85
2861 2953 4.436998 GGCCGTCCGAGTCACTGG 62.437 72.222 0.00 0.00 0.00 4.00
2862 2954 3.681835 GCCGTCCGAGTCACTGGT 61.682 66.667 0.00 0.00 0.00 4.00
2863 2955 2.258591 CCGTCCGAGTCACTGGTG 59.741 66.667 0.00 0.00 0.00 4.17
2864 2956 2.265904 CCGTCCGAGTCACTGGTGA 61.266 63.158 0.00 0.00 37.24 4.02
2892 2993 6.653740 GTGATGCCAATGATTAGATGAGATCA 59.346 38.462 0.00 0.00 36.77 2.92
2955 3056 5.087397 GCTGATAGATTCGTCGTACCATAC 58.913 45.833 0.00 0.00 0.00 2.39
2997 3102 2.100252 CCAGGCTAATTTGACCATGCAG 59.900 50.000 0.00 0.00 0.00 4.41
3007 3112 1.134310 TGACCATGCAGGATAGCTGTG 60.134 52.381 0.00 0.00 41.22 3.66
3008 3113 0.182061 ACCATGCAGGATAGCTGTGG 59.818 55.000 0.00 0.00 42.61 4.17
3009 3114 1.170919 CCATGCAGGATAGCTGTGGC 61.171 60.000 0.00 0.00 41.22 5.01
3010 3115 0.464916 CATGCAGGATAGCTGTGGCA 60.465 55.000 0.00 0.00 41.70 4.92
3011 3116 0.256752 ATGCAGGATAGCTGTGGCAA 59.743 50.000 0.00 0.00 41.70 4.52
3012 3117 0.038021 TGCAGGATAGCTGTGGCAAA 59.962 50.000 0.00 0.00 41.70 3.68
3013 3118 1.341285 TGCAGGATAGCTGTGGCAAAT 60.341 47.619 0.00 0.00 41.70 2.32
3014 3119 1.753073 GCAGGATAGCTGTGGCAAATT 59.247 47.619 0.00 0.00 41.70 1.82
3015 3120 2.167075 GCAGGATAGCTGTGGCAAATTT 59.833 45.455 0.00 0.00 41.70 1.82
3016 3121 3.777478 CAGGATAGCTGTGGCAAATTTG 58.223 45.455 14.03 14.03 41.70 2.32
3017 3122 3.194116 CAGGATAGCTGTGGCAAATTTGT 59.806 43.478 19.03 0.53 41.70 2.83
3018 3123 3.445096 AGGATAGCTGTGGCAAATTTGTC 59.555 43.478 15.92 15.92 41.70 3.18
3019 3124 3.193267 GGATAGCTGTGGCAAATTTGTCA 59.807 43.478 21.18 21.18 41.08 3.58
3020 3125 4.321899 GGATAGCTGTGGCAAATTTGTCAA 60.322 41.667 26.06 11.54 45.39 3.18
3021 3126 3.540314 AGCTGTGGCAAATTTGTCAAA 57.460 38.095 26.06 20.33 45.39 2.69
3022 3127 4.075963 AGCTGTGGCAAATTTGTCAAAT 57.924 36.364 26.06 10.23 45.39 2.32
3023 3128 4.453751 AGCTGTGGCAAATTTGTCAAATT 58.546 34.783 26.06 16.26 45.39 1.82
3059 3164 8.583810 ACAAAATCAAATCACAGAATGAACTG 57.416 30.769 0.00 0.00 41.93 3.16
3067 3172 3.469008 ACAGAATGAACTGTCCGTGAA 57.531 42.857 0.00 0.00 46.36 3.18
3068 3173 3.804036 ACAGAATGAACTGTCCGTGAAA 58.196 40.909 0.00 0.00 46.36 2.69
3069 3174 3.560068 ACAGAATGAACTGTCCGTGAAAC 59.440 43.478 0.00 0.00 46.36 2.78
3070 3175 3.809832 CAGAATGAACTGTCCGTGAAACT 59.190 43.478 0.00 0.00 39.69 2.66
3071 3176 4.988540 CAGAATGAACTGTCCGTGAAACTA 59.011 41.667 0.00 0.00 39.69 2.24
3072 3177 5.639506 CAGAATGAACTGTCCGTGAAACTAT 59.360 40.000 0.00 0.00 39.69 2.12
3073 3178 6.147821 CAGAATGAACTGTCCGTGAAACTATT 59.852 38.462 0.00 0.00 39.69 1.73
3074 3179 6.710744 AGAATGAACTGTCCGTGAAACTATTT 59.289 34.615 0.00 0.00 31.75 1.40
3075 3180 5.917541 TGAACTGTCCGTGAAACTATTTC 57.082 39.130 0.00 0.00 40.08 2.17
3076 3181 5.361427 TGAACTGTCCGTGAAACTATTTCA 58.639 37.500 0.00 0.00 46.68 2.69
3083 3188 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
3084 3189 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
3085 3190 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
3086 3191 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
3087 3192 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
3088 3193 1.429148 CTATTTCACGCGGCTGACCC 61.429 60.000 12.47 0.00 0.00 4.46
3099 3204 4.514577 CTGACCCGTGGCGCCTAG 62.515 72.222 29.70 20.71 0.00 3.02
3112 3217 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
3113 3218 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
3114 3219 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
3115 3220 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
3116 3221 4.756458 GCTCTCAGGCGCTGCACT 62.756 66.667 7.64 0.00 0.00 4.40
3117 3222 2.888111 CTCTCAGGCGCTGCACTA 59.112 61.111 7.64 0.00 0.00 2.74
3118 3223 1.226916 CTCTCAGGCGCTGCACTAG 60.227 63.158 7.64 0.00 0.00 2.57
3119 3224 1.943116 CTCTCAGGCGCTGCACTAGT 61.943 60.000 7.64 0.00 0.00 2.57
3120 3225 1.808799 CTCAGGCGCTGCACTAGTG 60.809 63.158 18.93 18.93 39.95 2.74
3130 3235 3.566261 CACTAGTGCAACGCCTGG 58.434 61.111 10.54 0.00 45.86 4.45
3131 3236 2.034879 CACTAGTGCAACGCCTGGG 61.035 63.158 10.54 0.00 45.86 4.45
3132 3237 2.214216 ACTAGTGCAACGCCTGGGA 61.214 57.895 0.00 0.00 45.86 4.37
3133 3238 1.448540 CTAGTGCAACGCCTGGGAG 60.449 63.158 0.00 0.00 45.86 4.30
3134 3239 3.605749 TAGTGCAACGCCTGGGAGC 62.606 63.158 0.00 0.00 45.86 4.70
3136 3241 3.318384 TGCAACGCCTGGGAGCTA 61.318 61.111 0.00 0.00 0.00 3.32
3137 3242 2.512515 GCAACGCCTGGGAGCTAG 60.513 66.667 0.00 0.00 0.00 3.42
3138 3243 2.187946 CAACGCCTGGGAGCTAGG 59.812 66.667 0.00 0.00 38.39 3.02
3150 3255 2.496817 GCTAGGCGCTGCACTAGT 59.503 61.111 21.78 0.00 39.07 2.57
3151 3256 1.880340 GCTAGGCGCTGCACTAGTG 60.880 63.158 18.93 18.93 39.07 2.74
3161 3266 3.566261 CACTAGTGCAACGCCCAG 58.434 61.111 10.54 0.00 45.86 4.45
3162 3267 2.034879 CACTAGTGCAACGCCCAGG 61.035 63.158 10.54 0.00 45.86 4.45
3163 3268 2.214216 ACTAGTGCAACGCCCAGGA 61.214 57.895 0.00 0.00 45.86 3.86
3164 3269 1.448540 CTAGTGCAACGCCCAGGAG 60.449 63.158 0.00 0.00 45.86 3.69
3165 3270 3.605749 TAGTGCAACGCCCAGGAGC 62.606 63.158 0.00 0.00 45.86 4.70
3167 3272 3.318384 TGCAACGCCCAGGAGCTA 61.318 61.111 0.00 0.00 0.00 3.32
3168 3273 2.512515 GCAACGCCCAGGAGCTAG 60.513 66.667 0.00 0.00 0.00 3.42
3169 3274 2.187946 CAACGCCCAGGAGCTAGG 59.812 66.667 0.00 0.00 0.00 3.02
3170 3275 3.787001 AACGCCCAGGAGCTAGGC 61.787 66.667 6.50 6.50 43.53 3.93
3184 3289 3.204597 GCTAGGCGCTACACTGTATAG 57.795 52.381 7.64 0.00 35.14 1.31
3185 3290 2.553172 GCTAGGCGCTACACTGTATAGT 59.447 50.000 7.64 0.00 34.63 2.12
3186 3291 3.609644 GCTAGGCGCTACACTGTATAGTG 60.610 52.174 17.20 17.20 46.55 2.74
3194 3299 2.591915 ACTGTATAGTGTGGCGCCT 58.408 52.632 29.70 9.99 35.34 5.52
3195 3300 1.771565 ACTGTATAGTGTGGCGCCTA 58.228 50.000 29.70 14.39 35.34 3.93
3196 3301 1.681793 ACTGTATAGTGTGGCGCCTAG 59.318 52.381 29.70 13.13 35.34 3.02
3197 3302 4.165507 ACTGTATAGTGTGGCGCCTAGC 62.166 54.545 29.70 17.93 39.66 3.42
3209 3314 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
3210 3315 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
3211 3316 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
3212 3317 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
3214 3319 3.117171 CTCTCAGGCGCTGCACAC 61.117 66.667 7.64 0.00 0.00 3.82
3215 3320 3.586461 CTCTCAGGCGCTGCACACT 62.586 63.158 7.64 0.00 0.00 3.55
3216 3321 3.420606 CTCAGGCGCTGCACACTG 61.421 66.667 7.64 4.89 0.00 3.66
3217 3322 3.871248 CTCAGGCGCTGCACACTGA 62.871 63.158 7.64 9.54 37.61 3.41
3218 3323 2.745100 CAGGCGCTGCACACTGAT 60.745 61.111 7.64 0.00 32.86 2.90
3219 3324 2.033141 AGGCGCTGCACACTGATT 59.967 55.556 7.64 0.00 0.00 2.57
3220 3325 1.601759 AGGCGCTGCACACTGATTT 60.602 52.632 7.64 0.00 0.00 2.17
3221 3326 0.321564 AGGCGCTGCACACTGATTTA 60.322 50.000 7.64 0.00 0.00 1.40
3222 3327 0.097674 GGCGCTGCACACTGATTTAG 59.902 55.000 7.64 0.00 0.00 1.85
3223 3328 0.798776 GCGCTGCACACTGATTTAGT 59.201 50.000 0.00 0.00 41.36 2.24
3243 3348 2.438411 TGTTTTTCTGAACACACGGGT 58.562 42.857 0.00 0.00 34.77 5.28
3267 3372 3.833645 CTGGCCGTGTAGCGCCTA 61.834 66.667 2.29 0.00 39.71 3.93
3268 3373 3.151710 TGGCCGTGTAGCGCCTAT 61.152 61.111 2.29 0.00 39.71 2.57
3269 3374 2.355956 GGCCGTGTAGCGCCTATC 60.356 66.667 2.29 0.00 39.71 2.08
3270 3375 2.728817 GCCGTGTAGCGCCTATCT 59.271 61.111 2.29 0.00 39.71 1.98
3271 3376 1.371881 GCCGTGTAGCGCCTATCTC 60.372 63.158 2.29 0.00 39.71 2.75
3272 3377 1.797211 GCCGTGTAGCGCCTATCTCT 61.797 60.000 2.29 0.00 39.71 3.10
3273 3378 0.039978 CCGTGTAGCGCCTATCTCTG 60.040 60.000 2.29 0.00 39.71 3.35
3274 3379 0.945099 CGTGTAGCGCCTATCTCTGA 59.055 55.000 2.29 0.00 0.00 3.27
3275 3380 1.069568 CGTGTAGCGCCTATCTCTGAG 60.070 57.143 2.29 0.00 0.00 3.35
3276 3381 1.268352 GTGTAGCGCCTATCTCTGAGG 59.732 57.143 2.29 0.00 37.12 3.86
3282 3387 3.280920 CCTATCTCTGAGGCGTTGC 57.719 57.895 4.59 0.00 0.00 4.17
3283 3388 0.461548 CCTATCTCTGAGGCGTTGCA 59.538 55.000 4.59 0.00 0.00 4.08
3284 3389 1.565305 CTATCTCTGAGGCGTTGCAC 58.435 55.000 4.59 0.00 0.00 4.57
3285 3390 0.894835 TATCTCTGAGGCGTTGCACA 59.105 50.000 4.59 0.00 0.00 4.57
3286 3391 0.390866 ATCTCTGAGGCGTTGCACAG 60.391 55.000 4.59 8.26 36.46 3.66
3287 3392 1.301244 CTCTGAGGCGTTGCACAGT 60.301 57.895 12.33 0.00 36.49 3.55
3288 3393 1.563435 CTCTGAGGCGTTGCACAGTG 61.563 60.000 0.00 0.00 36.49 3.66
3289 3394 1.889105 CTGAGGCGTTGCACAGTGT 60.889 57.895 1.61 0.00 32.94 3.55
3290 3395 0.599991 CTGAGGCGTTGCACAGTGTA 60.600 55.000 1.61 0.00 32.94 2.90
3291 3396 0.599991 TGAGGCGTTGCACAGTGTAG 60.600 55.000 1.61 0.00 0.00 2.74
3292 3397 0.600255 GAGGCGTTGCACAGTGTAGT 60.600 55.000 1.61 0.00 0.00 2.73
3293 3398 0.880278 AGGCGTTGCACAGTGTAGTG 60.880 55.000 1.61 0.00 42.37 2.74
3294 3399 1.157870 GGCGTTGCACAGTGTAGTGT 61.158 55.000 1.61 0.00 41.52 3.55
3296 3401 0.581529 CGTTGCACAGTGTAGTGTGG 59.418 55.000 18.52 1.81 46.73 4.17
3297 3402 0.307760 GTTGCACAGTGTAGTGTGGC 59.692 55.000 18.52 12.34 46.73 5.01
3298 3403 1.157257 TTGCACAGTGTAGTGTGGCG 61.157 55.000 18.52 0.00 46.73 5.69
3299 3404 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
3300 3405 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
3301 3406 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
3302 3407 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
3303 3408 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
3304 3409 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
3305 3410 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
3306 3411 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
3307 3412 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
3308 3413 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
3321 3426 3.388059 CGTGTCGGACGTCACATAA 57.612 52.632 18.91 0.00 43.50 1.90
3322 3427 1.688793 CGTGTCGGACGTCACATAAA 58.311 50.000 18.91 0.00 43.50 1.40
3323 3428 2.052891 CGTGTCGGACGTCACATAAAA 58.947 47.619 18.91 0.00 43.50 1.52
3324 3429 2.472115 CGTGTCGGACGTCACATAAAAA 59.528 45.455 18.91 0.00 43.50 1.94
3325 3430 3.421312 CGTGTCGGACGTCACATAAAAAG 60.421 47.826 18.91 0.00 43.50 2.27
3326 3431 3.061322 TGTCGGACGTCACATAAAAAGG 58.939 45.455 18.91 0.00 0.00 3.11
3327 3432 3.062042 GTCGGACGTCACATAAAAAGGT 58.938 45.455 18.91 0.00 0.00 3.50
3328 3433 3.122445 GTCGGACGTCACATAAAAAGGTC 59.878 47.826 18.91 0.00 0.00 3.85
3329 3434 3.061322 CGGACGTCACATAAAAAGGTCA 58.939 45.455 18.91 0.00 31.25 4.02
3330 3435 3.122948 CGGACGTCACATAAAAAGGTCAG 59.877 47.826 18.91 0.00 31.25 3.51
3331 3436 3.120304 GGACGTCACATAAAAAGGTCAGC 60.120 47.826 18.91 0.00 31.25 4.26
3332 3437 2.812011 ACGTCACATAAAAAGGTCAGCC 59.188 45.455 0.00 0.00 0.00 4.85
3333 3438 2.159707 CGTCACATAAAAAGGTCAGCCG 60.160 50.000 0.00 0.00 40.50 5.52
3334 3439 1.810151 TCACATAAAAAGGTCAGCCGC 59.190 47.619 0.00 0.00 40.50 6.53
3335 3440 0.802494 ACATAAAAAGGTCAGCCGCG 59.198 50.000 0.00 0.00 40.50 6.46
3336 3441 0.802494 CATAAAAAGGTCAGCCGCGT 59.198 50.000 4.92 0.00 40.50 6.01
3337 3442 0.802494 ATAAAAAGGTCAGCCGCGTG 59.198 50.000 4.92 0.00 40.50 5.34
3338 3443 0.249953 TAAAAAGGTCAGCCGCGTGA 60.250 50.000 4.92 0.00 40.50 4.35
3339 3444 1.098712 AAAAAGGTCAGCCGCGTGAA 61.099 50.000 4.92 0.00 40.50 3.18
3340 3445 1.098712 AAAAGGTCAGCCGCGTGAAA 61.099 50.000 4.92 0.00 40.50 2.69
3341 3446 0.889186 AAAGGTCAGCCGCGTGAAAT 60.889 50.000 4.92 0.00 40.50 2.17
3342 3447 0.036765 AAGGTCAGCCGCGTGAAATA 60.037 50.000 4.92 0.00 40.50 1.40
3343 3448 0.460284 AGGTCAGCCGCGTGAAATAG 60.460 55.000 4.92 0.00 40.50 1.73
3344 3449 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
3345 3450 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
3346 3451 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
3347 3452 2.095919 GTCAGCCGCGTGAAATAGTTTT 60.096 45.455 4.92 0.00 0.00 2.43
3348 3453 3.123959 GTCAGCCGCGTGAAATAGTTTTA 59.876 43.478 4.92 0.00 0.00 1.52
3349 3454 3.123959 TCAGCCGCGTGAAATAGTTTTAC 59.876 43.478 4.92 0.00 0.00 2.01
3359 3464 8.176814 CGTGAAATAGTTTTACGGATAGTTCA 57.823 34.615 10.64 0.00 45.34 3.18
3360 3465 8.814235 CGTGAAATAGTTTTACGGATAGTTCAT 58.186 33.333 10.64 0.00 45.34 2.57
3374 3479 9.784531 ACGGATAGTTCATTCTATGATTTGATT 57.215 29.630 0.00 0.00 39.39 2.57
3380 3485 9.388506 AGTTCATTCTATGATTTGATTTCGTCT 57.611 29.630 0.00 0.00 39.39 4.18
3413 3518 8.441312 AAATTTATCAAATTTGCCCATAGCTG 57.559 30.769 13.54 0.00 46.30 4.24
3414 3519 6.543430 TTTATCAAATTTGCCCATAGCTGT 57.457 33.333 13.54 0.00 44.23 4.40
3615 3720 6.139672 GGCAACAAAATTGTCTATTGTTCG 57.860 37.500 0.00 1.91 43.36 3.95
3616 3721 5.388371 GGCAACAAAATTGTCTATTGTTCGC 60.388 40.000 0.00 9.13 43.36 4.70
3617 3722 5.662815 GCAACAAAATTGTCTATTGTTCGCG 60.663 40.000 0.00 0.00 43.36 5.87
3618 3723 3.911964 ACAAAATTGTCTATTGTTCGCGC 59.088 39.130 0.00 0.00 36.50 6.86
3619 3724 4.158384 CAAAATTGTCTATTGTTCGCGCT 58.842 39.130 5.56 0.00 0.00 5.92
3620 3725 5.106869 ACAAAATTGTCTATTGTTCGCGCTA 60.107 36.000 5.56 0.00 36.50 4.26
3621 3726 5.539582 AAATTGTCTATTGTTCGCGCTAA 57.460 34.783 5.56 0.00 0.00 3.09
3622 3727 4.778842 ATTGTCTATTGTTCGCGCTAAG 57.221 40.909 5.56 0.00 0.00 2.18
3623 3728 2.536365 TGTCTATTGTTCGCGCTAAGG 58.464 47.619 5.56 0.00 0.00 2.69
3624 3729 2.164827 TGTCTATTGTTCGCGCTAAGGA 59.835 45.455 5.56 0.00 0.00 3.36
3625 3730 2.534757 GTCTATTGTTCGCGCTAAGGAC 59.465 50.000 5.56 5.76 0.00 3.85
3626 3731 1.517276 CTATTGTTCGCGCTAAGGACG 59.483 52.381 5.56 0.00 0.00 4.79
3627 3732 1.082117 ATTGTTCGCGCTAAGGACGG 61.082 55.000 5.56 0.00 0.00 4.79
3628 3733 2.144833 TTGTTCGCGCTAAGGACGGA 62.145 55.000 5.56 0.00 0.00 4.69
3629 3734 1.444895 GTTCGCGCTAAGGACGGAA 60.445 57.895 5.56 0.00 0.00 4.30
3630 3735 1.010419 GTTCGCGCTAAGGACGGAAA 61.010 55.000 5.56 0.00 0.00 3.13
3631 3736 0.319727 TTCGCGCTAAGGACGGAAAA 60.320 50.000 5.56 0.00 0.00 2.29
3632 3737 0.108520 TCGCGCTAAGGACGGAAAAT 60.109 50.000 5.56 0.00 0.00 1.82
3633 3738 0.026285 CGCGCTAAGGACGGAAAATG 59.974 55.000 5.56 0.00 0.00 2.32
3634 3739 1.084289 GCGCTAAGGACGGAAAATGT 58.916 50.000 0.00 0.00 0.00 2.71
3635 3740 1.467342 GCGCTAAGGACGGAAAATGTT 59.533 47.619 0.00 0.00 0.00 2.71
3636 3741 2.095415 GCGCTAAGGACGGAAAATGTTT 60.095 45.455 0.00 0.00 0.00 2.83
3637 3742 3.743886 CGCTAAGGACGGAAAATGTTTC 58.256 45.455 0.00 0.00 0.00 2.78
3638 3743 3.187637 CGCTAAGGACGGAAAATGTTTCA 59.812 43.478 3.35 0.00 0.00 2.69
3639 3744 4.142687 CGCTAAGGACGGAAAATGTTTCAT 60.143 41.667 3.35 0.00 0.00 2.57
3640 3745 5.095490 GCTAAGGACGGAAAATGTTTCATG 58.905 41.667 3.35 0.00 0.00 3.07
3641 3746 5.106317 GCTAAGGACGGAAAATGTTTCATGA 60.106 40.000 0.00 0.00 0.00 3.07
3642 3747 5.982890 AAGGACGGAAAATGTTTCATGAT 57.017 34.783 0.00 0.00 0.00 2.45
3643 3748 7.201696 GCTAAGGACGGAAAATGTTTCATGATA 60.202 37.037 0.00 0.00 0.00 2.15
3644 3749 7.645058 AAGGACGGAAAATGTTTCATGATAT 57.355 32.000 0.00 0.00 0.00 1.63
3645 3750 8.746052 AAGGACGGAAAATGTTTCATGATATA 57.254 30.769 0.00 0.00 0.00 0.86
3646 3751 8.383318 AGGACGGAAAATGTTTCATGATATAG 57.617 34.615 0.00 0.00 0.00 1.31
3647 3752 7.993183 AGGACGGAAAATGTTTCATGATATAGT 59.007 33.333 0.00 0.00 0.00 2.12
3648 3753 8.070171 GGACGGAAAATGTTTCATGATATAGTG 58.930 37.037 0.00 0.00 0.00 2.74
3649 3754 8.506168 ACGGAAAATGTTTCATGATATAGTGT 57.494 30.769 0.00 0.00 0.00 3.55
3650 3755 8.956426 ACGGAAAATGTTTCATGATATAGTGTT 58.044 29.630 0.00 0.00 0.00 3.32
3651 3756 9.438291 CGGAAAATGTTTCATGATATAGTGTTC 57.562 33.333 0.00 0.00 0.00 3.18
3652 3757 9.438291 GGAAAATGTTTCATGATATAGTGTTCG 57.562 33.333 0.00 0.00 0.00 3.95
3653 3758 9.988350 GAAAATGTTTCATGATATAGTGTTCGT 57.012 29.630 0.00 0.00 0.00 3.85
3654 3759 9.773328 AAAATGTTTCATGATATAGTGTTCGTG 57.227 29.630 0.00 0.00 0.00 4.35
3655 3760 8.716646 AATGTTTCATGATATAGTGTTCGTGA 57.283 30.769 0.00 0.00 36.39 4.35
3656 3761 7.755582 TGTTTCATGATATAGTGTTCGTGAG 57.244 36.000 0.00 0.00 38.67 3.51
3657 3762 6.756542 TGTTTCATGATATAGTGTTCGTGAGG 59.243 38.462 0.00 0.00 38.67 3.86
3658 3763 6.465439 TTCATGATATAGTGTTCGTGAGGT 57.535 37.500 0.00 0.00 38.67 3.85
3659 3764 7.576861 TTCATGATATAGTGTTCGTGAGGTA 57.423 36.000 0.00 0.00 38.67 3.08
3660 3765 6.967135 TCATGATATAGTGTTCGTGAGGTAC 58.033 40.000 0.00 0.00 33.95 3.34
3673 3778 3.171949 AGGTACTCTCTCCGTTCCG 57.828 57.895 0.00 0.00 0.00 4.30
3674 3779 0.617413 AGGTACTCTCTCCGTTCCGA 59.383 55.000 0.00 0.00 0.00 4.55
3675 3780 1.004044 AGGTACTCTCTCCGTTCCGAA 59.996 52.381 0.00 0.00 0.00 4.30
3676 3781 2.022934 GGTACTCTCTCCGTTCCGAAT 58.977 52.381 0.00 0.00 0.00 3.34
3677 3782 2.426381 GGTACTCTCTCCGTTCCGAATT 59.574 50.000 0.00 0.00 0.00 2.17
3678 3783 3.629398 GGTACTCTCTCCGTTCCGAATTA 59.371 47.826 0.00 0.00 0.00 1.40
3679 3784 3.779271 ACTCTCTCCGTTCCGAATTAC 57.221 47.619 0.00 0.00 0.00 1.89
3680 3785 3.354467 ACTCTCTCCGTTCCGAATTACT 58.646 45.455 0.00 0.00 0.00 2.24
3681 3786 3.762823 ACTCTCTCCGTTCCGAATTACTT 59.237 43.478 0.00 0.00 0.00 2.24
3682 3787 4.106029 TCTCTCCGTTCCGAATTACTTG 57.894 45.455 0.00 0.00 0.00 3.16
3683 3788 3.508793 TCTCTCCGTTCCGAATTACTTGT 59.491 43.478 0.00 0.00 0.00 3.16
3684 3789 3.841643 TCTCCGTTCCGAATTACTTGTC 58.158 45.455 0.00 0.00 0.00 3.18
3685 3790 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
3686 3791 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
3687 3792 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
3688 3793 2.347452 CGTTCCGAATTACTTGTCGCAT 59.653 45.455 0.00 0.00 35.93 4.73
3689 3794 3.670203 GTTCCGAATTACTTGTCGCATG 58.330 45.455 0.00 0.00 35.93 4.06
3690 3795 2.967362 TCCGAATTACTTGTCGCATGT 58.033 42.857 0.00 4.39 35.93 3.21
3691 3796 4.112716 TCCGAATTACTTGTCGCATGTA 57.887 40.909 0.00 2.87 35.93 2.29
3692 3797 4.689071 TCCGAATTACTTGTCGCATGTAT 58.311 39.130 0.00 0.00 35.93 2.29
3693 3798 4.506288 TCCGAATTACTTGTCGCATGTATG 59.494 41.667 0.00 0.00 35.93 2.39
3694 3799 4.506288 CCGAATTACTTGTCGCATGTATGA 59.494 41.667 0.00 0.00 35.93 2.15
3695 3800 5.006261 CCGAATTACTTGTCGCATGTATGAA 59.994 40.000 0.00 0.00 35.93 2.57
3696 3801 6.292865 CCGAATTACTTGTCGCATGTATGAAT 60.293 38.462 0.00 0.00 35.93 2.57
3697 3802 6.571154 CGAATTACTTGTCGCATGTATGAATG 59.429 38.462 0.00 0.00 0.00 2.67
3698 3803 6.925610 ATTACTTGTCGCATGTATGAATGT 57.074 33.333 0.00 0.00 0.00 2.71
3699 3804 8.432110 AATTACTTGTCGCATGTATGAATGTA 57.568 30.769 0.00 0.00 0.00 2.29
3700 3805 8.607441 ATTACTTGTCGCATGTATGAATGTAT 57.393 30.769 0.00 0.00 0.00 2.29
3701 3806 6.925610 ACTTGTCGCATGTATGAATGTATT 57.074 33.333 0.00 0.00 0.00 1.89
3702 3807 7.320443 ACTTGTCGCATGTATGAATGTATTT 57.680 32.000 0.00 0.00 0.00 1.40
3703 3808 8.432110 ACTTGTCGCATGTATGAATGTATTTA 57.568 30.769 0.00 0.00 0.00 1.40
3704 3809 8.551205 ACTTGTCGCATGTATGAATGTATTTAG 58.449 33.333 0.00 0.00 0.00 1.85
3705 3810 8.655651 TTGTCGCATGTATGAATGTATTTAGA 57.344 30.769 0.00 0.00 0.00 2.10
3706 3811 8.831715 TGTCGCATGTATGAATGTATTTAGAT 57.168 30.769 0.00 0.00 0.00 1.98
3707 3812 8.711457 TGTCGCATGTATGAATGTATTTAGATG 58.289 33.333 0.00 0.00 0.00 2.90
3708 3813 8.712363 GTCGCATGTATGAATGTATTTAGATGT 58.288 33.333 0.00 0.00 0.00 3.06
3709 3814 9.921637 TCGCATGTATGAATGTATTTAGATGTA 57.078 29.630 0.00 0.00 0.00 2.29
3740 3845 9.722056 AATTCTAAATACATTCATTTCAGCGAC 57.278 29.630 0.00 0.00 30.84 5.19
3741 3846 6.933130 TCTAAATACATTCATTTCAGCGACG 58.067 36.000 0.00 0.00 30.84 5.12
3742 3847 5.794687 AAATACATTCATTTCAGCGACGA 57.205 34.783 0.00 0.00 0.00 4.20
3743 3848 5.395325 AATACATTCATTTCAGCGACGAG 57.605 39.130 0.00 0.00 0.00 4.18
3744 3849 2.688507 ACATTCATTTCAGCGACGAGT 58.311 42.857 0.00 0.00 0.00 4.18
3745 3850 3.845178 ACATTCATTTCAGCGACGAGTA 58.155 40.909 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.680805 GCCCTCCGATCTCATTTGTGAA 60.681 50.000 0.00 0.00 0.00 3.18
1 2 1.134401 GCCCTCCGATCTCATTTGTGA 60.134 52.381 0.00 0.00 0.00 3.58
2 3 1.303309 GCCCTCCGATCTCATTTGTG 58.697 55.000 0.00 0.00 0.00 3.33
3 4 0.179073 CGCCCTCCGATCTCATTTGT 60.179 55.000 0.00 0.00 40.02 2.83
4 5 0.179073 ACGCCCTCCGATCTCATTTG 60.179 55.000 0.00 0.00 41.02 2.32
5 6 0.179073 CACGCCCTCCGATCTCATTT 60.179 55.000 0.00 0.00 41.02 2.32
6 7 1.443407 CACGCCCTCCGATCTCATT 59.557 57.895 0.00 0.00 41.02 2.57
7 8 2.502492 CCACGCCCTCCGATCTCAT 61.502 63.158 0.00 0.00 41.02 2.90
8 9 3.147595 CCACGCCCTCCGATCTCA 61.148 66.667 0.00 0.00 41.02 3.27
9 10 3.917760 CCCACGCCCTCCGATCTC 61.918 72.222 0.00 0.00 41.02 2.75
10 11 4.458829 TCCCACGCCCTCCGATCT 62.459 66.667 0.00 0.00 41.02 2.75
11 12 3.917760 CTCCCACGCCCTCCGATC 61.918 72.222 0.00 0.00 41.02 3.69
12 13 3.976490 TTCTCCCACGCCCTCCGAT 62.976 63.158 0.00 0.00 41.02 4.18
13 14 4.689549 TTCTCCCACGCCCTCCGA 62.690 66.667 0.00 0.00 41.02 4.55
14 15 4.148825 CTTCTCCCACGCCCTCCG 62.149 72.222 0.00 0.00 44.21 4.63
15 16 3.787001 CCTTCTCCCACGCCCTCC 61.787 72.222 0.00 0.00 0.00 4.30
16 17 4.475135 GCCTTCTCCCACGCCCTC 62.475 72.222 0.00 0.00 0.00 4.30
24 25 4.516195 GAGTCGCCGCCTTCTCCC 62.516 72.222 0.00 0.00 0.00 4.30
25 26 4.516195 GGAGTCGCCGCCTTCTCC 62.516 72.222 7.19 7.19 39.41 3.71
47 48 0.382515 CGACGATGGGGAGAGTTCTC 59.617 60.000 0.39 0.39 42.14 2.87
48 49 0.323542 ACGACGATGGGGAGAGTTCT 60.324 55.000 0.00 0.00 0.00 3.01
49 50 0.100861 GACGACGATGGGGAGAGTTC 59.899 60.000 0.00 0.00 0.00 3.01
50 51 1.321074 GGACGACGATGGGGAGAGTT 61.321 60.000 0.00 0.00 0.00 3.01
51 52 1.753463 GGACGACGATGGGGAGAGT 60.753 63.158 0.00 0.00 0.00 3.24
52 53 3.121019 GGACGACGATGGGGAGAG 58.879 66.667 0.00 0.00 0.00 3.20
62 63 2.202440 AAGATGACGCGGACGACG 60.202 61.111 12.47 0.00 43.93 5.12
63 64 2.215604 CGAAGATGACGCGGACGAC 61.216 63.158 12.47 2.62 43.93 4.34
64 65 2.099638 CGAAGATGACGCGGACGA 59.900 61.111 12.47 0.00 43.93 4.20
66 67 1.134530 CTGACGAAGATGACGCGGAC 61.135 60.000 12.47 4.63 0.00 4.79
67 68 1.136774 CTGACGAAGATGACGCGGA 59.863 57.895 12.47 0.00 0.00 5.54
68 69 1.134530 GTCTGACGAAGATGACGCGG 61.135 60.000 12.47 0.00 37.23 6.46
69 70 0.179187 AGTCTGACGAAGATGACGCG 60.179 55.000 3.53 3.53 37.23 6.01
70 71 1.540407 GAGTCTGACGAAGATGACGC 58.460 55.000 1.52 0.00 37.23 5.19
71 72 1.530031 CCGAGTCTGACGAAGATGACG 60.530 57.143 1.52 0.00 37.23 4.35
72 73 1.795889 GCCGAGTCTGACGAAGATGAC 60.796 57.143 1.52 0.00 37.23 3.06
73 74 0.452184 GCCGAGTCTGACGAAGATGA 59.548 55.000 1.52 0.00 37.23 2.92
74 75 0.863538 CGCCGAGTCTGACGAAGATG 60.864 60.000 1.52 0.00 37.23 2.90
75 76 1.025113 TCGCCGAGTCTGACGAAGAT 61.025 55.000 1.52 0.00 37.23 2.40
76 77 1.636570 CTCGCCGAGTCTGACGAAGA 61.637 60.000 5.82 0.00 33.61 2.87
77 78 1.226156 CTCGCCGAGTCTGACGAAG 60.226 63.158 5.82 0.00 33.61 3.79
78 79 1.636570 CTCTCGCCGAGTCTGACGAA 61.637 60.000 14.64 0.00 34.95 3.85
79 80 2.047560 TCTCGCCGAGTCTGACGA 60.048 61.111 14.64 0.00 0.00 4.20
80 81 2.401592 CTCTCGCCGAGTCTGACG 59.598 66.667 14.64 0.00 34.95 4.35
81 82 2.101380 GCTCTCGCCGAGTCTGAC 59.899 66.667 14.64 0.00 41.98 3.51
124 125 3.974757 GTCTACCGCGGGGGATCG 61.975 72.222 31.76 10.53 39.97 3.69
125 126 3.974757 CGTCTACCGCGGGGGATC 61.975 72.222 31.76 17.83 39.97 3.36
147 148 4.477975 GTCCCTCCGACTGCGACG 62.478 72.222 0.00 0.00 40.82 5.12
148 149 4.477975 CGTCCCTCCGACTGCGAC 62.478 72.222 0.00 0.00 39.56 5.19
181 182 4.925861 GATGAGGGCAGCTCGGGC 62.926 72.222 0.00 0.00 39.06 6.13
182 183 4.247380 GGATGAGGGCAGCTCGGG 62.247 72.222 0.00 0.00 0.00 5.14
183 184 4.247380 GGGATGAGGGCAGCTCGG 62.247 72.222 0.00 0.00 0.00 4.63
184 185 3.160047 AGGGATGAGGGCAGCTCG 61.160 66.667 0.00 0.00 35.62 5.03
185 186 1.757423 GAGAGGGATGAGGGCAGCTC 61.757 65.000 0.00 0.00 0.00 4.09
186 187 1.765657 GAGAGGGATGAGGGCAGCT 60.766 63.158 0.00 0.00 0.00 4.24
187 188 2.817056 GGAGAGGGATGAGGGCAGC 61.817 68.421 0.00 0.00 0.00 5.25
188 189 0.693767 AAGGAGAGGGATGAGGGCAG 60.694 60.000 0.00 0.00 0.00 4.85
189 190 0.642156 TAAGGAGAGGGATGAGGGCA 59.358 55.000 0.00 0.00 0.00 5.36
190 191 1.807814 TTAAGGAGAGGGATGAGGGC 58.192 55.000 0.00 0.00 0.00 5.19
191 192 5.608860 AGTTTATTAAGGAGAGGGATGAGGG 59.391 44.000 0.00 0.00 0.00 4.30
192 193 6.327626 TCAGTTTATTAAGGAGAGGGATGAGG 59.672 42.308 0.00 0.00 0.00 3.86
193 194 7.366847 TCAGTTTATTAAGGAGAGGGATGAG 57.633 40.000 0.00 0.00 0.00 2.90
194 195 7.568738 TCATCAGTTTATTAAGGAGAGGGATGA 59.431 37.037 0.00 0.00 35.31 2.92
195 196 7.659390 GTCATCAGTTTATTAAGGAGAGGGATG 59.341 40.741 0.00 0.00 0.00 3.51
196 197 7.570607 AGTCATCAGTTTATTAAGGAGAGGGAT 59.429 37.037 0.00 0.00 0.00 3.85
197 198 6.903534 AGTCATCAGTTTATTAAGGAGAGGGA 59.096 38.462 0.00 0.00 0.00 4.20
198 199 7.130681 AGTCATCAGTTTATTAAGGAGAGGG 57.869 40.000 0.00 0.00 0.00 4.30
199 200 7.786030 TGAGTCATCAGTTTATTAAGGAGAGG 58.214 38.462 0.00 0.00 0.00 3.69
200 201 9.311916 CTTGAGTCATCAGTTTATTAAGGAGAG 57.688 37.037 0.00 0.00 36.61 3.20
201 202 8.260818 CCTTGAGTCATCAGTTTATTAAGGAGA 58.739 37.037 0.00 0.00 36.61 3.71
202 203 8.043710 ACCTTGAGTCATCAGTTTATTAAGGAG 58.956 37.037 0.00 0.00 36.61 3.69
203 204 7.824289 CACCTTGAGTCATCAGTTTATTAAGGA 59.176 37.037 0.00 0.00 36.61 3.36
204 205 7.414540 GCACCTTGAGTCATCAGTTTATTAAGG 60.415 40.741 0.00 0.00 36.61 2.69
205 206 7.335422 AGCACCTTGAGTCATCAGTTTATTAAG 59.665 37.037 0.00 0.00 36.61 1.85
206 207 7.119699 CAGCACCTTGAGTCATCAGTTTATTAA 59.880 37.037 0.00 0.00 36.61 1.40
207 208 6.595326 CAGCACCTTGAGTCATCAGTTTATTA 59.405 38.462 0.00 0.00 36.61 0.98
208 209 5.413833 CAGCACCTTGAGTCATCAGTTTATT 59.586 40.000 0.00 0.00 36.61 1.40
209 210 4.940046 CAGCACCTTGAGTCATCAGTTTAT 59.060 41.667 0.00 0.00 36.61 1.40
210 211 4.318332 CAGCACCTTGAGTCATCAGTTTA 58.682 43.478 0.00 0.00 36.61 2.01
211 212 3.144506 CAGCACCTTGAGTCATCAGTTT 58.855 45.455 0.00 0.00 36.61 2.66
212 213 2.551721 CCAGCACCTTGAGTCATCAGTT 60.552 50.000 0.00 0.00 36.61 3.16
213 214 1.002888 CCAGCACCTTGAGTCATCAGT 59.997 52.381 0.00 0.00 36.61 3.41
214 215 1.277273 TCCAGCACCTTGAGTCATCAG 59.723 52.381 0.00 0.00 36.61 2.90
215 216 1.351076 TCCAGCACCTTGAGTCATCA 58.649 50.000 0.00 0.00 0.00 3.07
216 217 2.286872 CATCCAGCACCTTGAGTCATC 58.713 52.381 0.00 0.00 0.00 2.92
217 218 1.064906 CCATCCAGCACCTTGAGTCAT 60.065 52.381 0.00 0.00 0.00 3.06
218 219 0.325933 CCATCCAGCACCTTGAGTCA 59.674 55.000 0.00 0.00 0.00 3.41
219 220 0.326264 ACCATCCAGCACCTTGAGTC 59.674 55.000 0.00 0.00 0.00 3.36
220 221 0.326264 GACCATCCAGCACCTTGAGT 59.674 55.000 0.00 0.00 0.00 3.41
221 222 0.325933 TGACCATCCAGCACCTTGAG 59.674 55.000 0.00 0.00 0.00 3.02
222 223 0.325933 CTGACCATCCAGCACCTTGA 59.674 55.000 0.00 0.00 0.00 3.02
223 224 2.864114 CTGACCATCCAGCACCTTG 58.136 57.895 0.00 0.00 0.00 3.61
230 231 0.329261 TTTGGAGGCTGACCATCCAG 59.671 55.000 0.00 0.00 41.42 3.86
231 232 0.038166 GTTTGGAGGCTGACCATCCA 59.962 55.000 0.00 0.00 39.84 3.41
232 233 0.038166 TGTTTGGAGGCTGACCATCC 59.962 55.000 0.00 0.00 39.06 3.51
233 234 2.134789 ATGTTTGGAGGCTGACCATC 57.865 50.000 0.00 0.00 39.06 3.51
234 235 3.959495 ATATGTTTGGAGGCTGACCAT 57.041 42.857 0.00 0.00 39.06 3.55
235 236 3.010027 TGAATATGTTTGGAGGCTGACCA 59.990 43.478 0.00 0.00 39.06 4.02
236 237 3.620488 TGAATATGTTTGGAGGCTGACC 58.380 45.455 0.00 0.00 0.00 4.02
237 238 4.883585 TCATGAATATGTTTGGAGGCTGAC 59.116 41.667 0.00 0.00 35.73 3.51
238 239 5.114764 TCATGAATATGTTTGGAGGCTGA 57.885 39.130 0.00 0.00 35.73 4.26
239 240 4.277672 CCTCATGAATATGTTTGGAGGCTG 59.722 45.833 0.00 0.00 35.73 4.85
240 241 4.467769 CCTCATGAATATGTTTGGAGGCT 58.532 43.478 0.00 0.00 35.73 4.58
241 242 3.571401 CCCTCATGAATATGTTTGGAGGC 59.429 47.826 0.00 0.00 35.73 4.70
242 243 3.571401 GCCCTCATGAATATGTTTGGAGG 59.429 47.826 0.00 0.00 35.73 4.30
243 244 3.251729 CGCCCTCATGAATATGTTTGGAG 59.748 47.826 0.00 0.00 35.73 3.86
244 245 3.213506 CGCCCTCATGAATATGTTTGGA 58.786 45.455 0.00 0.00 35.73 3.53
245 246 2.951642 ACGCCCTCATGAATATGTTTGG 59.048 45.455 0.00 0.00 35.73 3.28
246 247 4.601019 GAACGCCCTCATGAATATGTTTG 58.399 43.478 0.00 0.00 35.73 2.93
247 248 3.312421 CGAACGCCCTCATGAATATGTTT 59.688 43.478 0.00 0.00 35.73 2.83
248 249 2.872245 CGAACGCCCTCATGAATATGTT 59.128 45.455 0.00 0.00 35.73 2.71
249 250 2.102420 TCGAACGCCCTCATGAATATGT 59.898 45.455 0.00 0.00 35.73 2.29
250 251 2.733552 CTCGAACGCCCTCATGAATATG 59.266 50.000 0.00 0.00 35.57 1.78
251 252 2.628178 TCTCGAACGCCCTCATGAATAT 59.372 45.455 0.00 0.00 0.00 1.28
252 253 2.028876 TCTCGAACGCCCTCATGAATA 58.971 47.619 0.00 0.00 0.00 1.75
253 254 0.824109 TCTCGAACGCCCTCATGAAT 59.176 50.000 0.00 0.00 0.00 2.57
254 255 0.108804 GTCTCGAACGCCCTCATGAA 60.109 55.000 0.00 0.00 0.00 2.57
255 256 0.965866 AGTCTCGAACGCCCTCATGA 60.966 55.000 0.00 0.00 0.00 3.07
256 257 0.803768 CAGTCTCGAACGCCCTCATG 60.804 60.000 0.00 0.00 0.00 3.07
257 258 1.513158 CAGTCTCGAACGCCCTCAT 59.487 57.895 0.00 0.00 0.00 2.90
258 259 2.962569 CAGTCTCGAACGCCCTCA 59.037 61.111 0.00 0.00 0.00 3.86
259 260 2.507324 GCAGTCTCGAACGCCCTC 60.507 66.667 0.00 0.00 0.00 4.30
260 261 2.992114 AGCAGTCTCGAACGCCCT 60.992 61.111 0.00 0.00 0.00 5.19
261 262 2.811317 CAGCAGTCTCGAACGCCC 60.811 66.667 0.00 0.00 0.00 6.13
262 263 3.482783 GCAGCAGTCTCGAACGCC 61.483 66.667 0.00 0.00 0.00 5.68
263 264 3.482783 GGCAGCAGTCTCGAACGC 61.483 66.667 0.00 0.00 0.00 4.84
264 265 2.811317 GGGCAGCAGTCTCGAACG 60.811 66.667 0.00 0.00 0.00 3.95
265 266 1.294659 CTTGGGCAGCAGTCTCGAAC 61.295 60.000 0.00 0.00 0.00 3.95
266 267 1.004560 CTTGGGCAGCAGTCTCGAA 60.005 57.895 0.00 0.00 0.00 3.71
267 268 1.260538 ATCTTGGGCAGCAGTCTCGA 61.261 55.000 0.00 0.00 0.00 4.04
268 269 1.088340 CATCTTGGGCAGCAGTCTCG 61.088 60.000 0.00 0.00 0.00 4.04
269 270 1.375098 GCATCTTGGGCAGCAGTCTC 61.375 60.000 0.00 0.00 0.00 3.36
270 271 1.378250 GCATCTTGGGCAGCAGTCT 60.378 57.895 0.00 0.00 0.00 3.24
271 272 1.676635 TGCATCTTGGGCAGCAGTC 60.677 57.895 0.00 0.00 36.11 3.51
272 273 2.437449 TGCATCTTGGGCAGCAGT 59.563 55.556 0.00 0.00 36.11 4.40
277 278 0.323999 ATTCAGCTGCATCTTGGGCA 60.324 50.000 9.47 0.00 39.32 5.36
278 279 0.102481 CATTCAGCTGCATCTTGGGC 59.898 55.000 9.47 0.00 0.00 5.36
279 280 1.758936 TCATTCAGCTGCATCTTGGG 58.241 50.000 9.47 0.00 0.00 4.12
280 281 3.130516 ACAATCATTCAGCTGCATCTTGG 59.869 43.478 9.47 0.00 0.00 3.61
281 282 4.371855 ACAATCATTCAGCTGCATCTTG 57.628 40.909 9.47 11.98 0.00 3.02
282 283 4.461431 TGAACAATCATTCAGCTGCATCTT 59.539 37.500 9.47 0.00 33.62 2.40
283 284 4.014406 TGAACAATCATTCAGCTGCATCT 58.986 39.130 9.47 0.00 33.62 2.90
284 285 4.365899 TGAACAATCATTCAGCTGCATC 57.634 40.909 9.47 0.00 33.62 3.91
285 286 4.381612 CCTTGAACAATCATTCAGCTGCAT 60.382 41.667 9.47 0.00 39.68 3.96
286 287 3.057104 CCTTGAACAATCATTCAGCTGCA 60.057 43.478 9.47 0.00 39.68 4.41
287 288 3.192001 TCCTTGAACAATCATTCAGCTGC 59.808 43.478 9.47 0.00 39.68 5.25
288 289 5.048224 AGTTCCTTGAACAATCATTCAGCTG 60.048 40.000 7.63 7.63 44.11 4.24
289 290 5.075493 AGTTCCTTGAACAATCATTCAGCT 58.925 37.500 9.42 0.00 44.11 4.24
290 291 5.382618 AGTTCCTTGAACAATCATTCAGC 57.617 39.130 9.42 0.00 44.11 4.26
291 292 7.211966 AGAAGTTCCTTGAACAATCATTCAG 57.788 36.000 9.42 0.00 44.11 3.02
292 293 7.587037 AAGAAGTTCCTTGAACAATCATTCA 57.413 32.000 9.42 0.00 44.11 2.57
293 294 9.399403 GTAAAGAAGTTCCTTGAACAATCATTC 57.601 33.333 9.42 4.35 44.11 2.67
294 295 8.076178 CGTAAAGAAGTTCCTTGAACAATCATT 58.924 33.333 9.42 8.41 44.11 2.57
295 296 7.308589 CCGTAAAGAAGTTCCTTGAACAATCAT 60.309 37.037 9.42 0.00 44.11 2.45
296 297 6.017440 CCGTAAAGAAGTTCCTTGAACAATCA 60.017 38.462 9.42 0.00 44.11 2.57
297 298 6.204108 TCCGTAAAGAAGTTCCTTGAACAATC 59.796 38.462 9.42 7.08 44.11 2.67
298 299 6.059484 TCCGTAAAGAAGTTCCTTGAACAAT 58.941 36.000 9.42 0.00 44.11 2.71
299 300 5.430007 TCCGTAAAGAAGTTCCTTGAACAA 58.570 37.500 9.42 0.00 44.11 2.83
300 301 5.026038 TCCGTAAAGAAGTTCCTTGAACA 57.974 39.130 9.42 0.00 44.11 3.18
301 302 6.555812 AATCCGTAAAGAAGTTCCTTGAAC 57.444 37.500 0.00 0.00 42.25 3.18
302 303 9.374838 GTATAATCCGTAAAGAAGTTCCTTGAA 57.625 33.333 0.00 0.00 0.00 2.69
303 304 8.755977 AGTATAATCCGTAAAGAAGTTCCTTGA 58.244 33.333 0.00 0.00 0.00 3.02
304 305 8.943909 AGTATAATCCGTAAAGAAGTTCCTTG 57.056 34.615 0.00 0.00 0.00 3.61
305 306 9.379791 CAAGTATAATCCGTAAAGAAGTTCCTT 57.620 33.333 0.00 0.00 0.00 3.36
306 307 8.537858 ACAAGTATAATCCGTAAAGAAGTTCCT 58.462 33.333 0.00 0.00 0.00 3.36
307 308 8.713737 ACAAGTATAATCCGTAAAGAAGTTCC 57.286 34.615 0.00 0.00 0.00 3.62
557 560 6.395426 TCCTTCTTACGTTCACTCAAAGTA 57.605 37.500 0.00 0.00 0.00 2.24
586 589 7.224557 TCAAAAGCTTCTTTGCTATTTTTGTCC 59.775 33.333 0.00 0.00 43.24 4.02
874 902 3.954258 TGTGAGATCCAGTCACGATATGT 59.046 43.478 8.55 0.00 46.21 2.29
903 931 8.176105 TGCATTATTATGGATTGAATAAGGGGA 58.824 33.333 0.00 0.00 32.57 4.81
1063 1116 1.450531 GCTTCTGTGTGTGCTTGCCT 61.451 55.000 0.00 0.00 0.00 4.75
1075 1128 4.942481 TCGCGTGCGTGCTTCTGT 62.942 61.111 14.47 0.00 40.74 3.41
1076 1129 3.701530 TTCGCGTGCGTGCTTCTG 61.702 61.111 14.47 0.00 40.74 3.02
1650 1712 2.321333 CGTGCACGTGCCAACCATA 61.321 57.895 35.72 14.34 41.18 2.74
1818 1880 2.581354 CAGAGGGAAGGCACGGAG 59.419 66.667 0.00 0.00 0.00 4.63
1827 1889 1.292242 AGGATGGAGTAGCAGAGGGAA 59.708 52.381 0.00 0.00 0.00 3.97
2139 2207 1.546589 ATCCCAGGTTGCCGACGTTA 61.547 55.000 0.00 0.00 0.00 3.18
2689 2762 3.688694 ACATCAACCCGCAGTTTAGTA 57.311 42.857 0.00 0.00 36.18 1.82
2716 2789 6.857848 TGGAATGGGAGCATGGTATTAATAA 58.142 36.000 0.00 0.00 0.00 1.40
2717 2790 6.461577 TGGAATGGGAGCATGGTATTAATA 57.538 37.500 0.00 0.00 0.00 0.98
2718 2791 5.337956 TGGAATGGGAGCATGGTATTAAT 57.662 39.130 0.00 0.00 0.00 1.40
2781 2870 8.834004 TGTTCAGGACCATAGTACTATAGTTT 57.166 34.615 15.03 4.68 33.58 2.66
2786 2875 8.768397 TGAAAATGTTCAGGACCATAGTACTAT 58.232 33.333 9.71 9.71 38.88 2.12
2819 2908 9.398170 CCAGCTGTTTTATAATAATTGAATCCG 57.602 33.333 13.81 0.00 0.00 4.18
2820 2909 9.196552 GCCAGCTGTTTTATAATAATTGAATCC 57.803 33.333 13.81 0.00 0.00 3.01
2821 2910 9.196552 GGCCAGCTGTTTTATAATAATTGAATC 57.803 33.333 13.81 0.00 0.00 2.52
2846 2938 2.258591 CACCAGTGACTCGGACGG 59.741 66.667 7.84 0.00 0.00 4.79
2861 2953 4.877823 TCTAATCATTGGCATCACAGTCAC 59.122 41.667 0.00 0.00 0.00 3.67
2862 2954 5.101648 TCTAATCATTGGCATCACAGTCA 57.898 39.130 0.00 0.00 0.00 3.41
2863 2955 5.761726 TCATCTAATCATTGGCATCACAGTC 59.238 40.000 0.00 0.00 0.00 3.51
2864 2956 5.687780 TCATCTAATCATTGGCATCACAGT 58.312 37.500 0.00 0.00 0.00 3.55
2865 2957 5.995897 TCTCATCTAATCATTGGCATCACAG 59.004 40.000 0.00 0.00 0.00 3.66
2866 2958 5.932455 TCTCATCTAATCATTGGCATCACA 58.068 37.500 0.00 0.00 0.00 3.58
2892 2993 5.365025 TCCATGCAGAGTTAGAATAAGCTCT 59.635 40.000 0.00 0.00 38.69 4.09
2997 3102 3.193267 TGACAAATTTGCCACAGCTATCC 59.807 43.478 18.12 0.00 40.80 2.59
3033 3138 9.681692 CAGTTCATTCTGTGATTTGATTTTGTA 57.318 29.630 0.00 0.00 36.54 2.41
3034 3139 8.199449 ACAGTTCATTCTGTGATTTGATTTTGT 58.801 29.630 0.00 0.00 45.40 2.83
3035 3140 8.583810 ACAGTTCATTCTGTGATTTGATTTTG 57.416 30.769 0.00 0.00 45.40 2.44
3036 3141 7.869429 GGACAGTTCATTCTGTGATTTGATTTT 59.131 33.333 4.06 0.00 46.81 1.82
3037 3142 7.373493 GGACAGTTCATTCTGTGATTTGATTT 58.627 34.615 4.06 0.00 46.81 2.17
3038 3143 6.348786 CGGACAGTTCATTCTGTGATTTGATT 60.349 38.462 4.06 0.00 46.81 2.57
3039 3144 5.122869 CGGACAGTTCATTCTGTGATTTGAT 59.877 40.000 4.06 0.00 46.81 2.57
3040 3145 4.452114 CGGACAGTTCATTCTGTGATTTGA 59.548 41.667 4.06 0.00 46.81 2.69
3041 3146 4.214119 ACGGACAGTTCATTCTGTGATTTG 59.786 41.667 4.06 0.00 46.81 2.32
3042 3147 4.389374 ACGGACAGTTCATTCTGTGATTT 58.611 39.130 4.06 0.00 46.81 2.17
3043 3148 4.008074 ACGGACAGTTCATTCTGTGATT 57.992 40.909 4.06 0.00 46.81 2.57
3044 3149 3.685139 ACGGACAGTTCATTCTGTGAT 57.315 42.857 4.06 0.00 46.81 3.06
3046 3151 2.754472 TCACGGACAGTTCATTCTGTG 58.246 47.619 4.06 4.48 46.81 3.66
3048 3153 3.809832 AGTTTCACGGACAGTTCATTCTG 59.190 43.478 0.00 0.00 40.80 3.02
3049 3154 4.073293 AGTTTCACGGACAGTTCATTCT 57.927 40.909 0.00 0.00 0.00 2.40
3050 3155 6.481954 AATAGTTTCACGGACAGTTCATTC 57.518 37.500 0.00 0.00 0.00 2.67
3051 3156 6.485313 TGAAATAGTTTCACGGACAGTTCATT 59.515 34.615 1.24 0.00 44.21 2.57
3052 3157 5.995282 TGAAATAGTTTCACGGACAGTTCAT 59.005 36.000 1.24 0.00 44.21 2.57
3053 3158 5.361427 TGAAATAGTTTCACGGACAGTTCA 58.639 37.500 1.24 0.00 44.21 3.18
3054 3159 5.917541 TGAAATAGTTTCACGGACAGTTC 57.082 39.130 1.24 0.00 44.21 3.01
3064 3169 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
3065 3170 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
3066 3171 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
3067 3172 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
3068 3173 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
3069 3174 1.429148 GGGTCAGCCGCGTGAAATAG 61.429 60.000 4.92 0.00 34.97 1.73
3070 3175 1.448893 GGGTCAGCCGCGTGAAATA 60.449 57.895 4.92 0.00 34.97 1.40
3071 3176 2.746277 GGGTCAGCCGCGTGAAAT 60.746 61.111 4.92 0.00 34.97 2.17
3082 3187 4.514577 CTAGGCGCCACGGGTCAG 62.515 72.222 31.54 9.46 0.00 3.51
3087 3192 4.577246 GAGAGCTAGGCGCCACGG 62.577 72.222 31.54 18.60 40.39 4.94
3088 3193 3.764810 CTGAGAGCTAGGCGCCACG 62.765 68.421 31.54 19.97 40.39 4.94
3089 3194 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
3090 3195 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
3099 3204 3.362399 TAGTGCAGCGCCTGAGAGC 62.362 63.158 2.29 0.00 39.42 4.09
3100 3205 1.226916 CTAGTGCAGCGCCTGAGAG 60.227 63.158 2.29 0.00 32.44 3.20
3101 3206 1.979155 ACTAGTGCAGCGCCTGAGA 60.979 57.895 2.29 0.00 32.44 3.27
3102 3207 1.808799 CACTAGTGCAGCGCCTGAG 60.809 63.158 10.54 0.34 32.44 3.35
3103 3208 2.262603 CACTAGTGCAGCGCCTGA 59.737 61.111 10.54 0.00 32.44 3.86
3113 3218 2.034879 CCCAGGCGTTGCACTAGTG 61.035 63.158 18.93 18.93 0.00 2.74
3114 3219 2.172483 CTCCCAGGCGTTGCACTAGT 62.172 60.000 0.00 0.00 0.00 2.57
3115 3220 1.448540 CTCCCAGGCGTTGCACTAG 60.449 63.158 0.00 0.00 0.00 2.57
3116 3221 2.662596 CTCCCAGGCGTTGCACTA 59.337 61.111 0.00 0.00 0.00 2.74
3118 3223 3.605749 TAGCTCCCAGGCGTTGCAC 62.606 63.158 0.00 0.00 37.29 4.57
3119 3224 3.315142 CTAGCTCCCAGGCGTTGCA 62.315 63.158 0.00 0.00 37.29 4.08
3120 3225 2.512515 CTAGCTCCCAGGCGTTGC 60.513 66.667 0.00 0.00 37.29 4.17
3121 3226 2.187946 CCTAGCTCCCAGGCGTTG 59.812 66.667 0.00 0.00 37.29 4.10
3134 3239 4.409342 CACTAGTGCAGCGCCTAG 57.591 61.111 10.54 14.52 36.35 3.02
3144 3249 2.034879 CCTGGGCGTTGCACTAGTG 61.035 63.158 18.93 18.93 30.56 2.74
3145 3250 2.172483 CTCCTGGGCGTTGCACTAGT 62.172 60.000 0.00 0.00 30.56 2.57
3146 3251 1.448540 CTCCTGGGCGTTGCACTAG 60.449 63.158 0.00 0.00 30.56 2.57
3147 3252 2.662596 CTCCTGGGCGTTGCACTA 59.337 61.111 0.00 0.00 30.56 2.74
3149 3254 3.605749 TAGCTCCTGGGCGTTGCAC 62.606 63.158 0.00 0.00 37.29 4.57
3150 3255 3.315142 CTAGCTCCTGGGCGTTGCA 62.315 63.158 0.00 0.00 37.29 4.08
3151 3256 2.512515 CTAGCTCCTGGGCGTTGC 60.513 66.667 0.00 0.00 37.29 4.17
3152 3257 2.187946 CCTAGCTCCTGGGCGTTG 59.812 66.667 0.00 0.00 37.29 4.10
3162 3267 5.572865 ACTATACAGTGTAGCGCCTAGCTC 61.573 50.000 2.29 0.00 43.12 4.09
3163 3268 3.748027 ACTATACAGTGTAGCGCCTAGCT 60.748 47.826 2.29 0.00 46.39 3.32
3164 3269 2.553172 ACTATACAGTGTAGCGCCTAGC 59.447 50.000 2.29 0.00 38.99 3.42
3165 3270 4.148563 CACTATACAGTGTAGCGCCTAG 57.851 50.000 2.29 7.59 46.03 3.02
3176 3281 1.681793 CTAGGCGCCACACTATACAGT 59.318 52.381 31.54 5.27 34.42 3.55
3177 3282 1.603172 GCTAGGCGCCACACTATACAG 60.603 57.143 31.54 11.37 0.00 2.74
3178 3283 0.387929 GCTAGGCGCCACACTATACA 59.612 55.000 31.54 0.33 0.00 2.29
3179 3284 0.674534 AGCTAGGCGCCACACTATAC 59.325 55.000 31.54 8.64 40.39 1.47
3180 3285 0.959553 GAGCTAGGCGCCACACTATA 59.040 55.000 31.54 10.17 40.39 1.31
3181 3286 0.757188 AGAGCTAGGCGCCACACTAT 60.757 55.000 31.54 16.52 40.39 2.12
3182 3287 1.379977 AGAGCTAGGCGCCACACTA 60.380 57.895 31.54 11.42 40.39 2.74
3183 3288 2.681778 AGAGCTAGGCGCCACACT 60.682 61.111 31.54 21.99 40.39 3.55
3184 3289 2.202810 GAGAGCTAGGCGCCACAC 60.203 66.667 31.54 17.11 40.39 3.82
3185 3290 2.679996 TGAGAGCTAGGCGCCACA 60.680 61.111 31.54 15.42 40.39 4.17
3186 3291 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
3187 3292 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
3197 3302 3.117171 GTGTGCAGCGCCTGAGAG 61.117 66.667 2.29 0.00 32.44 3.20
3198 3303 3.619767 AGTGTGCAGCGCCTGAGA 61.620 61.111 2.29 0.00 32.44 3.27
3199 3304 3.420606 CAGTGTGCAGCGCCTGAG 61.421 66.667 15.59 0.00 32.44 3.35
3200 3305 2.736579 AATCAGTGTGCAGCGCCTGA 62.737 55.000 21.92 21.92 32.44 3.86
3201 3306 1.859427 AAATCAGTGTGCAGCGCCTG 61.859 55.000 2.29 14.85 34.12 4.85
3202 3307 0.321564 TAAATCAGTGTGCAGCGCCT 60.322 50.000 2.29 0.00 0.00 5.52
3203 3308 0.097674 CTAAATCAGTGTGCAGCGCC 59.902 55.000 2.29 0.00 0.00 6.53
3204 3309 0.798776 ACTAAATCAGTGTGCAGCGC 59.201 50.000 0.00 0.00 35.62 5.92
3223 3328 2.162608 CACCCGTGTGTTCAGAAAAACA 59.837 45.455 0.00 0.00 37.72 2.83
3224 3329 2.792749 CACCCGTGTGTTCAGAAAAAC 58.207 47.619 0.00 0.00 37.72 2.43
3225 3330 1.133407 GCACCCGTGTGTTCAGAAAAA 59.867 47.619 0.00 0.00 44.65 1.94
3226 3331 0.736053 GCACCCGTGTGTTCAGAAAA 59.264 50.000 0.00 0.00 44.65 2.29
3227 3332 1.433053 CGCACCCGTGTGTTCAGAAA 61.433 55.000 0.00 0.00 44.65 2.52
3228 3333 1.885388 CGCACCCGTGTGTTCAGAA 60.885 57.895 0.00 0.00 44.65 3.02
3229 3334 2.279851 CGCACCCGTGTGTTCAGA 60.280 61.111 0.00 0.00 44.65 3.27
3230 3335 2.279851 TCGCACCCGTGTGTTCAG 60.280 61.111 8.16 0.00 44.65 3.02
3231 3336 2.586635 GTCGCACCCGTGTGTTCA 60.587 61.111 8.16 0.00 44.65 3.18
3232 3337 3.698463 CGTCGCACCCGTGTGTTC 61.698 66.667 8.16 3.16 44.65 3.18
3254 3359 0.039978 CAGAGATAGGCGCTACACGG 60.040 60.000 7.64 0.00 43.93 4.94
3256 3361 1.268352 CCTCAGAGATAGGCGCTACAC 59.732 57.143 7.64 0.00 0.00 2.90
3257 3362 1.610363 CCTCAGAGATAGGCGCTACA 58.390 55.000 7.64 0.00 0.00 2.74
3264 3369 0.461548 TGCAACGCCTCAGAGATAGG 59.538 55.000 0.00 0.00 37.17 2.57
3265 3370 1.134995 TGTGCAACGCCTCAGAGATAG 60.135 52.381 0.00 0.00 42.39 2.08
3266 3371 0.894835 TGTGCAACGCCTCAGAGATA 59.105 50.000 0.00 0.00 42.39 1.98
3267 3372 0.390866 CTGTGCAACGCCTCAGAGAT 60.391 55.000 0.00 0.00 42.39 2.75
3268 3373 1.005748 CTGTGCAACGCCTCAGAGA 60.006 57.895 0.00 0.00 42.39 3.10
3269 3374 1.301244 ACTGTGCAACGCCTCAGAG 60.301 57.895 6.74 0.00 42.39 3.35
3270 3375 1.595109 CACTGTGCAACGCCTCAGA 60.595 57.895 6.74 0.00 42.39 3.27
3271 3376 0.599991 TACACTGTGCAACGCCTCAG 60.600 55.000 7.90 0.00 42.39 3.35
3272 3377 0.599991 CTACACTGTGCAACGCCTCA 60.600 55.000 7.90 0.00 42.39 3.86
3273 3378 0.600255 ACTACACTGTGCAACGCCTC 60.600 55.000 7.90 0.00 42.39 4.70
3274 3379 0.880278 CACTACACTGTGCAACGCCT 60.880 55.000 7.90 0.00 42.39 5.52
3275 3380 1.157870 ACACTACACTGTGCAACGCC 61.158 55.000 7.90 0.00 42.39 5.68
3276 3381 0.042188 CACACTACACTGTGCAACGC 60.042 55.000 7.90 0.00 42.39 4.84
3277 3382 0.581529 CCACACTACACTGTGCAACG 59.418 55.000 7.90 0.00 42.39 4.10
3278 3383 0.307760 GCCACACTACACTGTGCAAC 59.692 55.000 7.90 0.00 40.33 4.17
3279 3384 1.157257 CGCCACACTACACTGTGCAA 61.157 55.000 7.90 0.00 40.33 4.08
3280 3385 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
3281 3386 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
3282 3387 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
3283 3388 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
3284 3389 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
3285 3390 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
3286 3391 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
3287 3392 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
3288 3393 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
3289 3394 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
3290 3395 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
3291 3396 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
3304 3409 3.120786 CCTTTTTATGTGACGTCCGACAC 60.121 47.826 14.12 13.81 40.22 3.67
3305 3410 3.061322 CCTTTTTATGTGACGTCCGACA 58.939 45.455 14.12 12.21 0.00 4.35
3306 3411 3.062042 ACCTTTTTATGTGACGTCCGAC 58.938 45.455 14.12 6.06 0.00 4.79
3307 3412 3.243805 TGACCTTTTTATGTGACGTCCGA 60.244 43.478 14.12 0.00 0.00 4.55
3308 3413 3.061322 TGACCTTTTTATGTGACGTCCG 58.939 45.455 14.12 0.00 0.00 4.79
3309 3414 3.120304 GCTGACCTTTTTATGTGACGTCC 60.120 47.826 14.12 5.06 0.00 4.79
3310 3415 3.120304 GGCTGACCTTTTTATGTGACGTC 60.120 47.826 9.11 9.11 0.00 4.34
3311 3416 2.812011 GGCTGACCTTTTTATGTGACGT 59.188 45.455 0.00 0.00 0.00 4.34
3312 3417 2.159707 CGGCTGACCTTTTTATGTGACG 60.160 50.000 0.00 0.00 0.00 4.35
3313 3418 2.414161 GCGGCTGACCTTTTTATGTGAC 60.414 50.000 0.00 0.00 0.00 3.67
3314 3419 1.810151 GCGGCTGACCTTTTTATGTGA 59.190 47.619 0.00 0.00 0.00 3.58
3315 3420 1.465689 CGCGGCTGACCTTTTTATGTG 60.466 52.381 0.00 0.00 0.00 3.21
3316 3421 0.802494 CGCGGCTGACCTTTTTATGT 59.198 50.000 0.00 0.00 0.00 2.29
3317 3422 0.802494 ACGCGGCTGACCTTTTTATG 59.198 50.000 12.47 0.00 0.00 1.90
3318 3423 0.802494 CACGCGGCTGACCTTTTTAT 59.198 50.000 12.47 0.00 0.00 1.40
3319 3424 0.249953 TCACGCGGCTGACCTTTTTA 60.250 50.000 12.47 0.00 0.00 1.52
3320 3425 1.098712 TTCACGCGGCTGACCTTTTT 61.099 50.000 12.47 0.00 0.00 1.94
3321 3426 1.098712 TTTCACGCGGCTGACCTTTT 61.099 50.000 12.47 0.00 0.00 2.27
3322 3427 0.889186 ATTTCACGCGGCTGACCTTT 60.889 50.000 12.47 0.00 0.00 3.11
3323 3428 0.036765 TATTTCACGCGGCTGACCTT 60.037 50.000 12.47 0.00 0.00 3.50
3324 3429 0.460284 CTATTTCACGCGGCTGACCT 60.460 55.000 12.47 0.00 0.00 3.85
3325 3430 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
3326 3431 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
3327 3432 1.803334 AAACTATTTCACGCGGCTGA 58.197 45.000 12.47 2.44 0.00 4.26
3328 3433 2.611974 AAAACTATTTCACGCGGCTG 57.388 45.000 12.47 0.00 0.00 4.85
3329 3434 2.093152 CGTAAAACTATTTCACGCGGCT 59.907 45.455 12.47 0.00 0.00 5.52
3330 3435 2.424341 CGTAAAACTATTTCACGCGGC 58.576 47.619 12.47 0.00 0.00 6.53
3331 3436 2.667481 TCCGTAAAACTATTTCACGCGG 59.333 45.455 12.47 0.00 34.24 6.46
3332 3437 3.976468 TCCGTAAAACTATTTCACGCG 57.024 42.857 3.53 3.53 30.82 6.01
3333 3438 6.579491 ACTATCCGTAAAACTATTTCACGC 57.421 37.500 0.00 0.00 30.82 5.34
3334 3439 8.176814 TGAACTATCCGTAAAACTATTTCACG 57.823 34.615 0.00 0.00 0.00 4.35
3348 3453 9.784531 AATCAAATCATAGAATGAACTATCCGT 57.215 29.630 0.00 0.00 43.50 4.69
3354 3459 9.388506 AGACGAAATCAAATCATAGAATGAACT 57.611 29.630 0.00 0.00 43.50 3.01
3387 3492 9.545105 CAGCTATGGGCAAATTTGATAAATTTA 57.455 29.630 22.31 0.00 46.34 1.40
3389 3494 7.567458 ACAGCTATGGGCAAATTTGATAAATT 58.433 30.769 22.31 3.60 44.79 1.82
3390 3495 7.070322 AGACAGCTATGGGCAAATTTGATAAAT 59.930 33.333 22.31 10.92 44.79 1.40
3391 3496 6.380846 AGACAGCTATGGGCAAATTTGATAAA 59.619 34.615 22.31 4.23 44.79 1.40
3392 3497 5.893255 AGACAGCTATGGGCAAATTTGATAA 59.107 36.000 22.31 6.01 44.79 1.75
3393 3498 5.448654 AGACAGCTATGGGCAAATTTGATA 58.551 37.500 22.31 9.67 44.79 2.15
3394 3499 4.284178 AGACAGCTATGGGCAAATTTGAT 58.716 39.130 22.31 9.01 44.79 2.57
3395 3500 3.700538 AGACAGCTATGGGCAAATTTGA 58.299 40.909 22.31 1.15 44.79 2.69
3396 3501 4.641989 AGTAGACAGCTATGGGCAAATTTG 59.358 41.667 14.03 14.03 44.79 2.32
3397 3502 4.860022 AGTAGACAGCTATGGGCAAATTT 58.140 39.130 0.00 0.00 44.79 1.82
3398 3503 4.510167 AGTAGACAGCTATGGGCAAATT 57.490 40.909 0.00 0.00 44.79 1.82
3399 3504 4.510167 AAGTAGACAGCTATGGGCAAAT 57.490 40.909 0.00 0.00 44.79 2.32
3400 3505 5.104527 ACATAAGTAGACAGCTATGGGCAAA 60.105 40.000 0.00 0.00 44.79 3.68
3401 3506 4.408921 ACATAAGTAGACAGCTATGGGCAA 59.591 41.667 0.00 0.00 44.79 4.52
3402 3507 3.967326 ACATAAGTAGACAGCTATGGGCA 59.033 43.478 0.00 0.00 44.79 5.36
3403 3508 4.561105 GACATAAGTAGACAGCTATGGGC 58.439 47.826 0.00 0.00 42.19 5.36
3404 3509 4.321304 CCGACATAAGTAGACAGCTATGGG 60.321 50.000 0.00 0.00 0.00 4.00
3405 3510 4.799678 CCGACATAAGTAGACAGCTATGG 58.200 47.826 0.00 0.00 0.00 2.74
3406 3511 4.230657 GCCGACATAAGTAGACAGCTATG 58.769 47.826 0.00 0.00 0.00 2.23
3407 3512 3.058155 CGCCGACATAAGTAGACAGCTAT 60.058 47.826 0.00 0.00 0.00 2.97
3408 3513 2.289820 CGCCGACATAAGTAGACAGCTA 59.710 50.000 0.00 0.00 0.00 3.32
3409 3514 1.065701 CGCCGACATAAGTAGACAGCT 59.934 52.381 0.00 0.00 0.00 4.24
3410 3515 1.478137 CGCCGACATAAGTAGACAGC 58.522 55.000 0.00 0.00 0.00 4.40
3411 3516 1.202256 TGCGCCGACATAAGTAGACAG 60.202 52.381 4.18 0.00 0.00 3.51
3412 3517 0.812549 TGCGCCGACATAAGTAGACA 59.187 50.000 4.18 0.00 0.00 3.41
3413 3518 1.787155 CATGCGCCGACATAAGTAGAC 59.213 52.381 4.18 0.00 0.00 2.59
3414 3519 1.407618 ACATGCGCCGACATAAGTAGA 59.592 47.619 4.18 0.00 0.00 2.59
3546 3651 5.638596 GGAAATACGGTTTCCAAGTCAAT 57.361 39.130 22.34 0.00 45.50 2.57
3606 3711 1.517276 CGTCCTTAGCGCGAACAATAG 59.483 52.381 12.10 0.00 0.00 1.73
3607 3712 1.552226 CGTCCTTAGCGCGAACAATA 58.448 50.000 12.10 0.00 0.00 1.90
3608 3713 1.082117 CCGTCCTTAGCGCGAACAAT 61.082 55.000 12.10 0.00 0.00 2.71
3609 3714 1.735198 CCGTCCTTAGCGCGAACAA 60.735 57.895 12.10 0.00 0.00 2.83
3610 3715 2.126228 CCGTCCTTAGCGCGAACA 60.126 61.111 12.10 0.00 0.00 3.18
3611 3716 1.010419 TTTCCGTCCTTAGCGCGAAC 61.010 55.000 12.10 0.00 0.00 3.95
3612 3717 0.319727 TTTTCCGTCCTTAGCGCGAA 60.320 50.000 12.10 0.99 0.00 4.70
3613 3718 0.108520 ATTTTCCGTCCTTAGCGCGA 60.109 50.000 12.10 0.00 0.00 5.87
3614 3719 0.026285 CATTTTCCGTCCTTAGCGCG 59.974 55.000 0.00 0.00 0.00 6.86
3615 3720 1.084289 ACATTTTCCGTCCTTAGCGC 58.916 50.000 0.00 0.00 0.00 5.92
3616 3721 3.187637 TGAAACATTTTCCGTCCTTAGCG 59.812 43.478 0.00 0.00 0.00 4.26
3617 3722 4.759516 TGAAACATTTTCCGTCCTTAGC 57.240 40.909 0.00 0.00 0.00 3.09
3618 3723 6.494893 TCATGAAACATTTTCCGTCCTTAG 57.505 37.500 0.00 0.00 0.00 2.18
3619 3724 8.746052 ATATCATGAAACATTTTCCGTCCTTA 57.254 30.769 0.00 0.00 0.00 2.69
3620 3725 5.982890 ATCATGAAACATTTTCCGTCCTT 57.017 34.783 0.00 0.00 0.00 3.36
3621 3726 7.993183 ACTATATCATGAAACATTTTCCGTCCT 59.007 33.333 0.00 0.00 0.00 3.85
3622 3727 8.070171 CACTATATCATGAAACATTTTCCGTCC 58.930 37.037 0.00 0.00 0.00 4.79
3623 3728 8.612619 ACACTATATCATGAAACATTTTCCGTC 58.387 33.333 0.00 0.00 0.00 4.79
3624 3729 8.506168 ACACTATATCATGAAACATTTTCCGT 57.494 30.769 0.00 0.00 0.00 4.69
3625 3730 9.438291 GAACACTATATCATGAAACATTTTCCG 57.562 33.333 0.00 0.00 0.00 4.30
3626 3731 9.438291 CGAACACTATATCATGAAACATTTTCC 57.562 33.333 0.00 0.00 0.00 3.13
3627 3732 9.988350 ACGAACACTATATCATGAAACATTTTC 57.012 29.630 0.00 0.00 0.00 2.29
3628 3733 9.773328 CACGAACACTATATCATGAAACATTTT 57.227 29.630 0.00 0.00 0.00 1.82
3629 3734 9.161629 TCACGAACACTATATCATGAAACATTT 57.838 29.630 0.00 0.00 0.00 2.32
3630 3735 8.716646 TCACGAACACTATATCATGAAACATT 57.283 30.769 0.00 0.00 0.00 2.71
3631 3736 7.439356 CCTCACGAACACTATATCATGAAACAT 59.561 37.037 0.00 0.00 0.00 2.71
3632 3737 6.756542 CCTCACGAACACTATATCATGAAACA 59.243 38.462 0.00 0.00 0.00 2.83
3633 3738 6.757010 ACCTCACGAACACTATATCATGAAAC 59.243 38.462 0.00 0.00 0.00 2.78
3634 3739 6.873997 ACCTCACGAACACTATATCATGAAA 58.126 36.000 0.00 0.00 0.00 2.69
3635 3740 6.465439 ACCTCACGAACACTATATCATGAA 57.535 37.500 0.00 0.00 0.00 2.57
3636 3741 6.771267 AGTACCTCACGAACACTATATCATGA 59.229 38.462 0.00 0.00 0.00 3.07
3637 3742 6.971602 AGTACCTCACGAACACTATATCATG 58.028 40.000 0.00 0.00 0.00 3.07
3638 3743 6.999272 AGAGTACCTCACGAACACTATATCAT 59.001 38.462 0.00 0.00 32.06 2.45
3639 3744 6.354938 AGAGTACCTCACGAACACTATATCA 58.645 40.000 0.00 0.00 32.06 2.15
3640 3745 6.707161 AGAGAGTACCTCACGAACACTATATC 59.293 42.308 12.18 0.00 44.40 1.63
3641 3746 6.593807 AGAGAGTACCTCACGAACACTATAT 58.406 40.000 12.18 0.00 44.40 0.86
3642 3747 5.987098 AGAGAGTACCTCACGAACACTATA 58.013 41.667 12.18 0.00 44.40 1.31
3643 3748 4.846040 AGAGAGTACCTCACGAACACTAT 58.154 43.478 12.18 0.00 44.40 2.12
3644 3749 4.252073 GAGAGAGTACCTCACGAACACTA 58.748 47.826 12.18 0.00 44.40 2.74
3645 3750 3.075884 GAGAGAGTACCTCACGAACACT 58.924 50.000 12.18 0.00 44.40 3.55
3646 3751 2.162008 GGAGAGAGTACCTCACGAACAC 59.838 54.545 12.18 0.00 44.40 3.32
3647 3752 2.434428 GGAGAGAGTACCTCACGAACA 58.566 52.381 12.18 0.00 44.40 3.18
3648 3753 1.397692 CGGAGAGAGTACCTCACGAAC 59.602 57.143 16.12 4.63 44.40 3.95
3649 3754 1.002888 ACGGAGAGAGTACCTCACGAA 59.997 52.381 22.39 0.00 44.40 3.85
3650 3755 0.612229 ACGGAGAGAGTACCTCACGA 59.388 55.000 22.39 0.00 44.40 4.35
3651 3756 1.397692 GAACGGAGAGAGTACCTCACG 59.602 57.143 17.92 17.92 44.40 4.35
3652 3757 1.744522 GGAACGGAGAGAGTACCTCAC 59.255 57.143 12.18 7.04 44.40 3.51
3653 3758 2.125773 GGAACGGAGAGAGTACCTCA 57.874 55.000 12.18 0.00 44.40 3.86
3668 3773 3.124636 ACATGCGACAAGTAATTCGGAAC 59.875 43.478 0.00 0.00 39.13 3.62
3669 3774 3.331150 ACATGCGACAAGTAATTCGGAA 58.669 40.909 0.00 0.00 39.13 4.30
3670 3775 2.967362 ACATGCGACAAGTAATTCGGA 58.033 42.857 0.00 0.00 40.02 4.55
3671 3776 4.506288 TCATACATGCGACAAGTAATTCGG 59.494 41.667 0.00 0.00 35.73 4.30
3672 3777 5.635549 TCATACATGCGACAAGTAATTCG 57.364 39.130 0.00 0.00 38.31 3.34
3673 3778 7.409697 ACATTCATACATGCGACAAGTAATTC 58.590 34.615 0.00 0.00 0.00 2.17
3674 3779 7.320443 ACATTCATACATGCGACAAGTAATT 57.680 32.000 0.00 0.00 0.00 1.40
3675 3780 6.925610 ACATTCATACATGCGACAAGTAAT 57.074 33.333 0.00 0.00 0.00 1.89
3676 3781 8.432110 AATACATTCATACATGCGACAAGTAA 57.568 30.769 0.00 0.00 0.00 2.24
3677 3782 8.432110 AAATACATTCATACATGCGACAAGTA 57.568 30.769 0.00 0.00 0.00 2.24
3678 3783 6.925610 AATACATTCATACATGCGACAAGT 57.074 33.333 0.00 0.00 0.00 3.16
3679 3784 8.764287 TCTAAATACATTCATACATGCGACAAG 58.236 33.333 0.00 0.00 0.00 3.16
3680 3785 8.655651 TCTAAATACATTCATACATGCGACAA 57.344 30.769 0.00 0.00 0.00 3.18
3681 3786 8.711457 CATCTAAATACATTCATACATGCGACA 58.289 33.333 0.00 0.00 0.00 4.35
3682 3787 8.712363 ACATCTAAATACATTCATACATGCGAC 58.288 33.333 0.00 0.00 0.00 5.19
3683 3788 8.831715 ACATCTAAATACATTCATACATGCGA 57.168 30.769 0.00 0.00 0.00 5.10
3714 3819 9.722056 GTCGCTGAAATGAATGTATTTAGAATT 57.278 29.630 0.00 0.00 30.78 2.17
3715 3820 8.064222 CGTCGCTGAAATGAATGTATTTAGAAT 58.936 33.333 0.00 0.00 30.78 2.40
3716 3821 7.276878 TCGTCGCTGAAATGAATGTATTTAGAA 59.723 33.333 0.00 0.00 30.78 2.10
3717 3822 6.754675 TCGTCGCTGAAATGAATGTATTTAGA 59.245 34.615 0.00 0.00 30.78 2.10
3718 3823 6.933130 TCGTCGCTGAAATGAATGTATTTAG 58.067 36.000 0.00 0.00 30.78 1.85
3719 3824 6.533723 ACTCGTCGCTGAAATGAATGTATTTA 59.466 34.615 0.00 0.00 30.78 1.40
3720 3825 5.351465 ACTCGTCGCTGAAATGAATGTATTT 59.649 36.000 0.00 0.00 33.19 1.40
3721 3826 4.870426 ACTCGTCGCTGAAATGAATGTATT 59.130 37.500 0.00 0.00 0.00 1.89
3722 3827 4.433615 ACTCGTCGCTGAAATGAATGTAT 58.566 39.130 0.00 0.00 0.00 2.29
3723 3828 3.845178 ACTCGTCGCTGAAATGAATGTA 58.155 40.909 0.00 0.00 0.00 2.29
3724 3829 2.688507 ACTCGTCGCTGAAATGAATGT 58.311 42.857 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.