>input_sequence_44224
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------------GTATAAATACCCCCGCTCTCATCGTTCTCCCCACACAGCCAGTGAGCAGCCAAGATAAGCTAGAGGCA
AGCACACACAGAAGCACGCACGCGAACCGTGCGAATGGCTGACACGGCCTCCGCCCCGCTCCTAACAAGCCACAAAACAA
GGCCGGCCAAGGCGCCGTCGATCGATGACACCATCGAGACGTACATGGGCGCCACCGGCGCCCTGCAGCTCCTCAAGGCC
GTCTTGCTGGCCTTCGCGTGGGCCTTCGACGCGCAGCAGGTGTTCATCTCGGTGTTCACCGACGCCGAGCCGCAGTGGCA
CTGCACCGGCGCCGACGCG---------TCCTGCTCGGCCGCCGCGGCCTCTCCGTGCGCGCTCCCGTCCGGCGCGTGGG
CGTGGGACCGCCCTGCCGTGACGTCGGTGGTCTCGGAGTGGTCACTCAAGTGCGCCGGCCCGGCGCTCGTGTCCCTCCCG
GCGTCCTCGTTCTTTGCCGGCTGCCTCGCCGGCGGCTTCCTCCTCACAACGCTCGCCGACTCGCTCCTGGGCCGCAGGAA
GATGCTGCTCGTGTCCATTGTGTCCATGTCCGTCGCTGGCGTGCTCACCGCGTTCTCGCCGAACGTGTGGGTGTACGCCG
CCCTGCGTTTCATGTCCGGGTTCGGCAGGTCTATGGTTGGCACGTGCACGCTGGTCCTCTCCACGGAGCTCGTCGGCAAG
AGGTGGCGCGACACGGTGTGCGTGGCGGGGTTCTTCTGCTTCACCCTCGGGTTCCTGTCGCTCCCGGCGCTCGCCTACAC
GTTCCGGGAGGAATCGTGGCGGAACATGTACCTGTGGACCTCCGTGCCTTCCCTCTGCTACTCCATCCTATTCTACTTCC
TCGTCCAGGAGTCGCCGCGGTGGCTTCTGGTGCGCGGCCGCAAGCAGGACGCCATCGAGACGCTGCAGCAGATCGCCTCG
CTCAACGGCAACAGCATCACGTCCAGCTTCTCCATGCTACACGCCTGCACCATGAACA------ATGACACGGCGGAGGA
GAGCAGCGGCGACAGCGTGTTCGCCACGCTGCACTCCATGTGGGAGCGCCCGTGGGCGCTCCGGAGGCTGGCGGCGATCA
TGACGGCCAGCTTCGGCGTCGGCATGGTCTACTACGGCATGCCGCTTAACGTCGGCAACCTGGGATCCAACCTCTACCTG
AGCGTCACGTACAACGCGCTGGCCGAGCTGCCGTCGTCCATCCTCTCGTGGCTCCTGATGGGCAGGATCAACCGCCGGAG
CTCGGTGATCGCGCTCACCGGGGCGGCGGGGATGTGGAGCCTCGCGTGCGTCATCATCCCGCAGGGCGCGGCGCGGATGG
CCGCCGAGCTGCTCTCCTTCTTCGCGACGTGCACGGCGTTCAACGTCATCATGATGTACTCCATCGAGCTGTTCCCGACG
TCCGTGCGCAACTCGGCGGTGGGGCTGGTAAGGCAGGCGCTGGTGCTGGGAGGCGTGGCGGCGCCCGTGCTCGTCGCGCT
GGGCCGCGAGAGGAGCTTCTTGTCGTTCGGCGTGTTCGGGCTCGTCGTCGGCTGCTTCGGCATGTTCGCTGCCTGCCTGC
CG----GAGACGCGGGGGAAGGGCATGTCGGACACCATGGACGAGGAGGAGCACAAGGAGGCGGCGGTGGCCGCTTGCAC
CGTCGACGATGCGGACTGTAACAGCGACCTCGTGTAATT-ATACTAAACTGCGGGTTGATGTACAAAGTTATTAATAC--
--CATGCTCCCATTCCAATCAA----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>chr2B_1_TraesCS2B01G232400
TTCACAAATGAGATCGGAGGGCGTGGGAGAAGGCGGCGACTCCGCCGGAGAACTCTCCCCATCGTCGTCCGCGTCATCTT
CGTCAGACTCGGCGAGAGCCCAGGAGCGCCCGCCGACGCGCCGGCGATCCCCCGCGGTAGACGGCGCCGTCGCAGTCGGA
GGGACGGCCGCCCGCCCAGTCGCCCGAGCTGCCCTCATCCCTCTCCTTAATAAACTGATGACTCAAGGTGCTGGATGGTC
AGCCTCCAAACATATTCATGAGGGCGTTCGAGACTGCTGCCCAAGATGCAGCTGAATGATTGTTCAAGGAACTTCTTTAC
GGATTATACTTGTATATGTACAAAAATAGCAAGATTTTAATTAGGTAACTGAAACAGTCAAGAGACATGGCTGAACATTC
CAAAACCAAGTAAACACATGGCACCGTAGAAGTACCATAACCTCCTATGGCCATGCGAGATTTTTGTGAGTATGGCCATA
AGATTTGGGTACCTTGATTAGCTCCATCCTGGAAAGGGTAGCAAAGATACA--TTTCCCCCCTAAAACAATAGCAACGGT
ACTTTGAGTGAACGTAAGAAGGATTCCAGGACAAAAATAGCAAAGAAGCTTTTGATGTACCCATACGGCGGCACCAACTG
GAATCAATCCAAGAGATAAGGAAGTTTTATGCCGGGTTTTGTCAAATGA-------TCTGGAGCTAGCTAATCGCCGAGC
TCGTACGCAAGAACATGCGGATCAATATCGTGACTGGGTTTCACATGATGGCGGTGGAGCAGGAGCGCCGTAGTACGTAG
CTGATGGATTA------------------CCCTATGCATGGCTCGTTGCTTACGTGGACCCTCGGGTCATCAAGTATACT
ACACCCCCTCCCATATTCTAAACATATCGTGACTGGATCTCACATGTGTCTC-CCCTTATTCAATCCAT-AATAATGCAG
CTCGTCGA-----------------------CGTCGGAATCCTGGTTGGAGCGCTGCACTGCGCTGCTCCGTTGACGTAC
ACTATCCCGCCCGTATAAATACCCCCGCTCTCATCGTTCTCCCCACACAGCCAGTGAGCAGCCAAGATAAGCTAGAGGCA
AGCACACACAGAAGCACGCACGCGAACCGTGCGAATGGCTGACACGGCCTCCGCCCCGCTCCTAACAAGCCACAAAACAA
GGCCGGCCAAGGCGCCGTCGATCGATGACACCATCGAGACGTACATGGGCGCCACCGGCGCCCTGCAGCTCCTCAAGGCC
GTCTTGCTGGCCTTCGCGTGGGCCTTCGACGCGCAGCAGGTGTTCATCTCGGTGTTCACCGACGCCGAGCCGCAGTGGCA
CTGCACCGGCGCCGACGCG---------TCCTGCTCGGCCGCCGCGGCCTCTCCGTGCGCGCTCCCGTCCGGCGCGTGGG
CGTGGGACCGCCCTGCCGTGACGTCGGTGGTCTCGGAGTGGTCACTCAAGTGCGCCGGCCCGGCGCTCGTGTCCCTCCCG
GCGTCCTCGTTCTTTGCCGGCTGCCTCGCCGGCGGCTTCCTCCTCACAACGCTCGCCGACTCGCTCCTGGGCCGCAGGAA
GATGCTGCTCGTGTCCATTGTGTCCATGTCCGTCGCTGGCGTGCTCACCGCGTTCTCGCCGAACGTGTGGGTGTACGCCG
CCCTGCGTTTCATGTCCGGGTTCGGCAGGTCTATGGTTGGCACGTGCACGCTGGTCCTCTCCACGGAGCTCGTCGGCAAG
AGGTGGCGCGACACGGTGTGCGTGGCGGGGTTCTTCTGCTTCACCCTCGGGTTCCTGTCGCTCCCGGCGCTCGCCTACAC
GTTCCGGGAGGAATCGTGGCGGAACATGTACCTGTGGACCTCCGTGCCTTCCCTCTGCTACTCCATCCTATTCTACTTCC
TCGTCCAGGAGTCGCCGCGGTGGCTTCTGGTGCGCGGCCGCAAGCAGGACGCCATCGAGACGCTGCAGCAGATCGCCTCG
CTCAACGGCAACAGCATCACGTCCAGCTTCTCCATGCTACACGCCTGCACCATGAACA------ATGACACGGCGGAGGA
GAGCAGCGGCGACAGCGTGTTCGCCACGCTGCACTCCATGTGGGAGCGCCCGTGGGCGCTCCGGAGGCTGGCGGCGATCA
TGACGGCCAGCTTCGGCGTCGGCATGGTCTACTACGGCATGCCGCTTAACGTCGGCAACCTGGGATCCAACCTCTACCTG
AGCGTCACGTACAACGCGCTGGCCGAGCTGCCGTCGTCCATCCTCTCGTGGCTCCTGATGGGCAGGATCAACCGCCGGAG
CTCGGTGATCGCGCTCACCGGGGCGGCGGGGATGTGGAGCCTCGCGTGCGTCATCATCCCGCAGGGCGCGGCGCGGATGG
CCGCCGAGCTGCTCTCCTTCTTCGCGACGTGCACGGCGTTCAACGTCATCATGATGTACTCCATCGAGCTGTTCCCGACG
TCCGTGCGCAACTCGGCGGTGGGGCTGGTAAGGCAGGCGCTGGTGCTGGGAGGCGTGGCGGCGCCCGTGCTCGTCGCGCT
GGGCCGCGAGAGGAGCTTCTTGTCGTTCGGCGTGTTCGGGCTCGTCGTCGGCTGCTTCGGCATGTTCGCTGCCTGCCTGC
CG----GAGACGCGGGGGAAGGGCATGTCGGACACCATGGACGAGGAGGAGCACAAGGAGGCGGCGGTGGCCGCTTGCAC
CGTCGACGATGCGGACTGTAACAGCGACCTCGTGTAATT-ATACTAAACTGCGGGTTGATGTACAAAGTTATTAATAC--
--CATGCTCCCATTCCAATCAAGTAAA------------TCGCAGCACATTACTGAACCCAACACGTGAAAACTATAGTA
CTATGGTCCTGAACATTTTCAGACAAACGGA---TTCAATTATTATAAAACAGCTGGCCGTCCGAGTCACTGGTGACTGT
-------GATGCCAATGATTAGATGAGA--TCAGAGCTTATTCTAACTCTGCATGGAATCTGCTTGGAAGATGCTGATAG
ATTCGTCGTACCATACG--AATATAAAACATGTATATA--CCAGGCTAATTTGACCATGCAGGATAGCTGTGGCAAATTT
GTCAAATTTGACCTATATACAAAATCAAATCACAGAATGAACTGTCCGTGAAACTATTTCACGCGGCTGACCCGTGGCGC
CTAGCTCTCAGGCGCTGCACTAGTGCAACGCCTGGGAGCTAGGCGCTGCACTAGTGCAACGCCCAGGAGCTAGGCGCTAC
ACTGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACACTGATTTAGTGTTTTTCTGAACACACGGGTGCGACGCTGGCC
GTGTAGCGCCTATCTCTGAGGCGTTGCACAGTGTAGTGTGGCGCCTTCGTGTCGGACGTCACATAAAAAGGTCAGCCGCG
TGAAATAGTTTTACGGATAGTTCATTCTATGATTTGATTTCGTCTATAGGTTAAATTTATCAAATTTGCCCATAGCTGTC
TACTTATGTCGGCGCATGTAAAAGCACATAGCCGTGTTGCACCCTGCCGCCATGAGAATGGAATACTGTTTCCACCCATT
TTTATTTATGCGACCTATATTGAATTGCTTTGTCTTTTTGATAGTATTATATTGACTTGGAAACCGTATTTCCAAGATGG
CAACGGATAAATATTTGGCAACAAAATTGTCTATTGTTCGCGCTAAGGACGGAAAATGTTTCATGATATAGTGTTCGTGA
GGTACTCTCTCCGTTCCGAATTACTTGTCGCATGTATGAATGTATTTAGATGTATTTTAATTCTAAATACATTCATTTCA
GCGACGAGTA
>chr2D_354
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------ATTTTAATTAGGTAACTGAAACAGTCAAGAGACACGGCTGAACATTC
CAAAACACAGTAAACACATGGCACCGTAGAAGTACCATAACCTCCTATGGCCATGCGAGATTTTTGTGAGTATGGCCATA
AGATTTGGGTACCTTGATTAGCACCATCCTGGAAAGGGTAGCAAAGATACT--TTTT-CCCCTAAAACAATAGCAACGGC
ACTTTGAGTGAACGTAAGAAGGATTCCAAGACAAAAATATCAAAGAAACTTTTGATGTACCCATACGGCGGTACCTACTG
GAACCGATCCA--AGATAAGGAAGTTTCATGCCGGATGTTGTCAAATGATCTGGATTCTGGAGCTAGCTAATCGCCGAGC
TCGTACGCCAGAACATGCGGATCAATATCGTGACTGGGTTTCACATGATGGTGGTGGAGCAGGAGCACCGTAGTACGTAG
CTGATGGATTACCCATTTACCCTTGATACCCCTATGCATGGCTCGTTGCTTACGTGGACCCTCAGGTCATCAAGTATATT
ACACCCTCTCCCATATTCTAA-CATATCGTGACTGGATCTCACATGTGTCCC-CCCTTATTCAATCCATGAATAATGCAG
CTCGTCGATCCCCATAGCGATCGATCTTGTGCGTCGGAATCCTGGTTGGAGCGCTGCACTGCGCTGCTCCGTTGACGTAC
ACTATCCCGCCCGTATAAATACCCCCGCTCTCATCGTTCTCCCCACACAGCCAGTGAGCGGCCAAGATAAGCTAGCGGCA
AGCACAC--AGAAGCACGCACGCGAACCGTGCGAATGGCTGACACGGCCGCCGCCCCGCTCCTAACAAGCCACAAAACAA
GGCCGGCCAAGGCGCCGTCGATCGATGACACCATCGAGACGTACATGGGCGCCACCGGCGCCCTGCAGCTCCTCAAGGCC
GTCTTGCTGGCCTTCGCGTGGGCCTTCGACGCGCAGCAGGTGTTCATCTCGGTCTTCACCGACGCCGAGCCGCAGTGGCA
CTGCACCGGCGCCGACGCG---------TCCTGCTCGGCCGCCGTGGCCTCGCCGTGCGCGCTCCCGCCCGGCGCGTGGG
CGTGGGACCGCCCGGCCGTGACGTCGGTGGTCTCGGAGTGGTCCCTCAAGTGCGCCGGCCCGGCGCTCGTCTCCCTCCCG
GCGTCCTCGTTCTTCGCCGGCTGCCTTGCCGGCGGCTTCCTCCTCACAACGCTCGCCGACTCGCTCCTGGGCCGCAGGAA
GATGCTGCTCGTGTCCATTGTGTCCATGTCCGTCGCTGGGGTGCTCACCGCGTTCTCGCCGAACGTGTGGGTGTACGCCG
CCCTGCGTTTCATGTCCGGGTTCGGCAGGTCCATGGTTGGCACGTGCACGCTGGTCCTCTCCACGGAGCTCGTCGGCAAG
AGGTGGCGCGACACGGTGTGCGTGGCGGGGTTCTTCTGCTTCACCCTCGGGTTCCTGTCGCTCCCGGCGCTCGCCTACAG
GTTCCGGGAGGAATCGTGGCGGAACATGTATCTGTGGACGTCCGTGCCATCCCTCTGCTACTCCATCCTATTCTACTTCC
TCGTCCAAGAGTCGCCGCGGTGGCTGCTGGTGCGCGGGCGCAAGCAGGACGCCATCGAGACGCTGCAGCAGATCGCCTCG
CTCAACGGCAACAGCATCACGTCCAGCTTCTCCATGCTGCACGCCTGCACCATGAACA------ATGACACCGCGGAGGA
GAGCGGCGGCGACAGCGTGTTCGCCACGCTGCACTCGATGTGGGAGCGCCCGTGGGCGCTCCGGAGGCTGGCGGCGATCA
TGACAGCCAGCTTCGGCGTCGGCATGGTCTACTACGGCATGCCGCTCAACGTCGGCAACCTTGGATCCAACCTCTACCTG
AGCGTCACGTACAACGCGCTGGCCGAGCTGCCGTCGTCCATCCTCTCGTGGCTGCTGATGGGCAGGATCAACCGCCGGAG
CTCGGTGATCGCGCTCACCGGGGCGGCGGGGGTATGGAGCCTCGCGTGCGTCGTCATCCCGCAGGGCGCGGCGCGGATGG
CCGCCGAGCTGCTCTCCTTCTTCGCGACGTGCACGGCGTTCAACGTCATCATGATGTACTCCATCGAGCTGTTCCCGACG
TCGGTGCGCAACTCGGCGGTGGGGTTGGTAAGGCAGGCGCTGGTGCTGGGAGGCGTGGCGGCGCCGGTGCTCGTCGCGCT
GGGCCGCGAGAGGAGCTTCTTGTCGTTCGGCGTGTTCGGGCTCGTCGTCGGCTGCTTCGGCATGTTCGCCGCCTGCCTGC
CG----GAGACGCGGGGGAAGGGCATGTCGGACACCATGGACGAGGAGGAGCACAAGGAGGCGGCGGTGGCCGCTTGCAC
CGTCGACGATGCGGACTGTAACAGCGACCTCGTGTAATT-AAACTAAACTGCGGATTGATGTACAAAG---TTAATAC--
--CATGCTCCCATTCCAATCAAGTCAAT-TGCTGCCAGGTCGCAGCACATTACTGAACCCAACACGTGAGAAC--TAGTA
CTATGGTCCTGAACATTTCAGACAAAA---A---TTCAATTATTATAAAACAGCTGGTCGTCCGAGTCACTG------GT
-------GATGCCAATGATTAGATGAGAGATCGGAGCTTATTCTAACTCTGCATGGAATCCGCTTGGAAGATGCTGATAG
ATTCGTCGTACCATATACAAATATAAAACATGTATATATACCAGGCTAATTTGACCATGCATGATAGCTGT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
TACTTATGTCGGCGCATGTAAAAGCACATAGCCGTGTTGCACCCTGCCGATATGAGAATGGAATACTGTTTCCACCCATT
TTAATTTATGGGACCTATATTGAATTGCTTTGTCTTTTTTATAGTATTA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>chr2A_354
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------ATTTTAATTAGGTAACTGAAACAGTCAAGAGACATCGCTGAACATTC
CAAAACCAAGTAAACACATGACACCCTAGAAGTACCATGACC--------CCATGCGAGATTTTTGTGAGCATGGCCCTA
AGATTTGGGTACCTTGATTAGCACCATCCTGGAAAGGGTAGCCAAGATAGTACTTTCCCCCCTAAAACAATAGCAACGGC
ACTTTGAGTGAACGTAAGAAGGATTCCAAGACAAAAATAGCAAAGAAGCTTTTGATGTACCCATACGGCGGCACCAACTG
GAATCAATCCAAGAGATAAGGAAGTTTTATGCCGGGTTTTGTCAAATGATC-------TGGAGCTAGCTAATCGCCGAGC
TCCTACGCAAGAACATGCCGATCAATATCGTGACTGGGTTTCACATGATGGCGGTGGAGCAGGAGCGCCGTAGTACGTAG
AAGAGTGGGTTACCCTA--------ATACCCCTATGCATGGCCCGTTGCTTACGTGGACCCTCGGGTCATCAAGTATACT
ACGCCCCCTCCCATATTCTAA-CATATCGTGACTGGATCTCACATGTGTCCCCCCCTTATTCAATCCATGAATAATGCAG
CTCGTCGATCCCCGTAGCGATCGATCTTGTGCGTCGGAATCCTGGTTGGAGCGC----------TGCTCCGTTGACGTAC
ACTATCCCGCCCGTATAAATACCCCCGCTCTCATCCTTCTCCCCACACAGCCAGTGAGCAGCCAAGATAAGCTAGCGGCA
AGCACACCA---------------AACCGTGCGAATGTCTGACACGGCCGCCGCCCCGCTCCTAACAAGCCACAAAACAA
GGCCGGTCAAGGCGCCGTCGATCGATGACACCATCGAGACGTACATGGGCGCCACAGGCGCCCTGCAGCTCCTCAAGGCC
GTCCTGCTGGCCTTCGCGTGGGCCTTCGACGCGCAGCAGGTGTTCATCTCGGTCTTCACCGACGCCGAGCCGCAGTGGCA
CTGCACCGGCGCCGACGCG---------TCCTGCTCGGCCGCCGTGGCCTCGCCGTGCGCGCTCCCGCCCGGCGCGTGGG
CGTGGGACCGGCCCGCCGTGACGTCGGTGGTCTCGGAGTGGTCGCTCAAGTGCGCCGGCCCGGCGCTCGTCTCCCTCCCG
GCGTCCTCGTTCTTCGCCGGCTGCCTCGCCGGCGGCTTCCTCCTCACGACGCTCGCCGACTCGCTCCTGGGCCGCAGGAA
GATGCTGCTCGTGTCCATTGTGTCCATGTCCGTCGCTGGCGTGCTCACCGCGTTCTCGCCGAACGTGTGGGTGTACGCCG
CCCTGCGTTTCATGTCCGGGTTCGGCAGGTCCATGGTTGGCACGTGCACGCTCGTCCTCTCCACGGAGCTCGTCGGCAAG
AGGTGGCGCGACACGGTGTGCGTGGCGGGGTTCTTCTGCTTCACCCTCGGGTTCCTGTCGCTCCCGGCGCTCGCCTACAC
GTTCCGGGAGGAATCGTGGCGGAACATGTATCTGTGGACGTCCGTGCCATCCCTCTGCTACTCCATCCTATTCTACTTCC
TCGTCCAGGAGTCACCGCGGTGGCTGCTGGTGCGCGGGCGCAAGCAGGACGCCATCGAGACGCTGCAGCAGATCGCTTCG
CTCAACGGCAACAGCATCACGTCCAGCTTCTCCATGCTGCACGCCTGCACCATGAACA------ATGACACGGCGGAGGA
GAGCGGCGGCGACAGCGTGTTCGCCACGCTGCACTCGATGTGGGAGCGCCCGTGGGCGCTCCGGAGGCTGGCGGCGATCA
TGACGGCCAGCTTCGGCGTCGGCATGGTCTACTACGGCATGCCGCTCAACGTCGGCAACCTGGGGTCCAACCTCTACCTG
AGCGTCACGTACAACGCGCTGGCCGAGCTGCCGTCGTCCATCCTCTCGTGGCTCCTGATGGGCAGGATCAACCGCCGGAG
CTCAGTGATCGCGCTCACCGGGGCGGCGGGGGTGTGGAGCCTCGCGTGCGTCATCATCCCGCAGGGCGCGGCGCGGATGG
CCGCGGAGCTGCTCTCCTTCTTCGCGACGTGCACGGCGTTCAACGTCATCATGATGTACTCCATCGAGCTGTTCCCGACG
TCGGTGCGCAACTCGGCGGTGGGGCTGGTAAGGCAGGCGCTGGTGCTGGGGGGCGTGGCGGCGCCCGTGCTCGTCGCGCT
GGGCCGCGAGAGGAGCTTCTTGTCGTTCGGCGTGTTCGGGCTCGTCGTCGGCTGCTTCGGCATGTTCGCCGCCTGCCTGC
CG----GAGACGCGGGGGAAGGGCATGTCGGACACCATGGACGAGGAGGAGCACAAGGAGGCGGCGGTGGCCGCCTGCAC
CGTCGACGATGCGGACTGTAACAGCGACCTCGTGTAATTAAAACTAAACTGCGGGTTGATGTACAAAG---TTAATACCA
TGCATGCTCCCATTCCAATCAAGTAAAACTGCTGCCAGGTCGCAGCACATTACCGAACCCAACACGTGAGAAC-----TA
CTATGGTCCTGAACATTTCAGACAAAA---AATATTCAATTATTATAAAACAGCTGGTCGTCCGAGTCACTG------GT
GACTGGTGATGCCAATGATTAGATGAGAGATCGGAGCTTATTCTAATTCTGCATGGAATCTGCTTGGAAGATGCTGATAG
ATTCGTCGTACC--ATACAAATATAAAACATGTATATATACCAGGCTAATTTGACCATGCATGATAGCTGT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
TACTTATGTCGGCGCGTGTAAAAGCACATAGCCGTGTTGCACCCTGCCGCCATGAGAATGGAATACTGTTTCCACCCATT
TTTATTTATGCGACCTATATTGAATTGATTTGTCTTTTTGATAGTATTATGTTGACTTGGAAACCGTATTTCCAAGATGG
CAACGGATAAATATTTGGCAACAAAATTGT--------------------------------------------------
--------------------------------------------------------------------------------
----------
>chr4A_1102
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------AATGGCTGACACGGCCGCCGCCCCGCTCCTGACAAGCCACAAAGCCA
G------------GCCGTCGATCGATGAAACGATGGAGGCGTACATGGGTGCCGCCGGCGCCGGGCAGCTTCTCAAGGCC
GTCTTGCTGGCCTTCGCGTGGGCCTTGGACGCGCAGCAGGTGTTCATCTCGGTCTTCACCGACGCCGAGCCGCCGTGGCA
CTGCACGGACGCCGACGCCGACGCGTCCTCCTGCTCCGCGGCTGCGGCCTCCCCTTGCGCGCTCCCGCCTGGCGCGTGGG
CGTGGGACCGTCCCGCCGTAACGTCGGTGGTCTCGGAGTGGTCACTGGAGTGCGCCGGCCCGGCGCTCGTCTCGCTCCCG
GCATCCTCGTTCTTCGCCGGATGCCTCGTCGGCGGATTCCTCCTCACCACGCTTGCCGACTCGCTCCTGGGCCGCAGGAA
GATGCTGCTCGCGTCCATTGTGTCCATGTCGGTCTCTGGCATGGTCACCGCGTTCTCGCCGAACGTGTGGGCGTACGCCG
CCCTGCGATTCGTGTCCGGGTTCGGCAGGTCCATGGTTGGCACGTGCACGCTGGTCCTATCCACGGAGCTCGTGGGAAGG
AGGTGGCGCGACACGGTGTGCGTGGCCGGGTTCTTCTGCTTCACCCTCGGGTTCCTGTCTCTCCCGGCGCTCGCCTACAC
GTTCCGGGAGGCGTCGTGGCGGAACATGTACCTGTGGACGTCCGTGCCGTCCCTCTGCTACGCCATCCTATTCTACTTCG
TCGTCCAGGAGTCGCCGCGGTGGCTGCTGGTGCGCGGCAGGAGGCAGGACGCCATCGACACGCTGCAGCAGATGCAGATC
GGCGGCATCACGT------CGTCCAGCTTCTCCATGATACACGCCTGTGCCGTGAACGACGACGATGA---CGCGGGGGC
GAGCGCGAG---CAGCGTGTTCGCCACGCTGCACTCCATGCGGGAGCGCCCGTGGGCGCTCCGGAGGCTGGCGGCGATCA
TGACGGCCAGCTTCGGCGTCGGCATGGTCTACTACGGCATGCCGCTCAACGTTGCCAACCTGGGCTCCAACCTCTACCTG
AGCGTCACGTACAATGCGCTGGCCGAGCTGCCGTCGTCCATCCTCTCGTGGCTCCTGATGGGCAGGATCAACCGTCGGAG
CTCGGTGGTCGCGCTCACGGCGGCGGCGGGGCTGTGGAGCCTCGCGTGCGTCGTAATCCCGCAGGGCACGGCGCGGATGG
CCGCCGAGCTGGTCTCCATCTTCGCGACGTGCACGGCGTTCAACGTCATACTCATGTACTCCATCGAGCTGTTCCCGACG
TCCGTCCGTAACTCGGCGGTGGGGCTGGTGAGGCAGGCGCTGGTGTTGGGAGGCGTGGCGGCGCCCGTGCTCGTCGCGCT
GGGGCGCCGCAACAGTTTCTTCTCCTTCGGCGTCTTCGGGCTCGTCATCGGCTGCTCCGGCATGTTCGCTGCCTGCCTGC
CTGCCAGAGACGAGGGGAAAGGCCATGTCCGACACCATGGACGAGGAAGACCACA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>chr5D_1293
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------CCGAGCCGCCGTGGCA
CTGCACGGACGCCGACGCCGACGCGTCCTCCTGCTCTGCGGCTGCGGCCTCCCCTTGCGCGCTCCCGCCTGGCGCGTGGG
CGTGGGACCGTCCCGCCGTAACGTCGGTGGTCTCGGAGTGGTCACTCGAGTGCGCCGGCCCGGCACTCGTCTCGCTCCTG
GCATCCTCGTTCTTCGCCGGATGCCTCGCCGGCGGATTCCTCCTCACCACGCTTGCCGATTCGCTCCTGGGCCGCAGGAA
GATGCTGCTCGCGTCCATTGTGTCCATGTCTGCCGCTGGCGTGGTCACCGCGTTCTCGCCGAACGTGTGGGCGTACGCCG
CCCTGCGGTTCGTGTCCGGGTTCGGCAGGTCCATGGTTGGCACGTGCACGCTTGTCCTATCCACGGAGCTCGTGGGAAGG
AGGTGGCGCGACACGGTGTGCGTGGCCGGGTTCTTCTGCTTCACCCTCGGGTTCCTGTCGCTCCCGGCGCTCGCCTACAC
GTTCCGGGAGGCGTCGTGGCGGAACATGTACCTGTGGACGTCCGTGCCGTCCCTCTGCTACTCCATCCTATTCTACTTCG
TCGTCCAGGAGTCGCCGCGGTGGCTGCTGGTGCGCGGCAGGAGGCAGGACGCCATCGACACGCTGCAGCAGATGCAGATC
GGCGGCATAACGT------CCTCCAATTTCTCCATGATACACGCCTGTGCCATGAACGACGATGATGACGACGCGGAGGC
GGGCGCGAG---CAGCGTGTTCGCCACGCTGCACTCCATGTGGGAGCGCCCGTGGGCGCTCCGGAGGCTGGCGGCGATCA
TGACGGCCAGCTTCGGCGTGGGCATGGTCTACTACGGCATGCCGCTCAACGTTGGCAACCTGGGCTCCAACCTCTACCTC
AGCGTCACGTACAATGCGCTGGCCGAGCTGCCGTCCTCCATCCTCTCGTGGCTCCTGATGGGACGGATCAACCGTCGGAG
CTCGGTGGTCGCGCTCACGGCGGCGGCGGGGCTGTGGAGCCTCGCGTGCGTCATCATCCCGCAGGGCACGGCGCGGATGG
CCGCCGAGCTGGTCTCCTTCTTCGCGACGTGCACGGCGTTCAACGTCATACTCATGTACTCCATCGAGCTGTTCCCGACG
TCCGTGCGTAACTCGGCGGTGGGGCTGGTCAGGCAGGCGCTGGTGCTGGGAGGCGTGGCGGCGCCCCTGCTCGTCGCGCT
CGGCCGCCGCAACAGCTTCTTCTCCTTCGGCGTCTTCGGGCTCGTCATCGGCTGCTCCGGCATGTTCGCTGCCTGCCTGC
CG----GAGACCAAGGGAAAGGCCATGTCCGACACCATGGACGAGGAGGACCACAAGGA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------
--------------------------------------------------------------------------------
----------------------S---------------------------S----------------------------S
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------S-----------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
-------SS----------------------------------------S------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
---------------------------------------------------S---------------S------------
-------------S--------------------------------------------------------S---------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S--------S-------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------SSS---------
---------------------------------------------------------------------S---SS-----
------------------SSSSSS---SSS---------------------------S--------------SSSSSS--
--------------------------------S-----------------------------------------------
---------------SS--------------------------------------------S---------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_251
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TGGATGGTC
AGCCTCCAAAC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>reverse_1889
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TTCCCTCTGCTACTCCATCCT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>forward_1334
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AGCAGGTGTTCATCTCGGTG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>reverse_3359
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------CC
GTGTAGCGCCTATCTCTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
