Multiple sequence alignment - TraesCS2B01G223400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G223400 chr2B 100.000 2725 0 0 1 2725 212945420 212942696 0.000000e+00 5033.0
1 TraesCS2B01G223400 chr2B 91.111 90 5 3 767 855 631328286 631328199 4.770000e-23 119.0
2 TraesCS2B01G223400 chr2D 94.462 1860 74 15 878 2725 155556663 155554821 0.000000e+00 2837.0
3 TraesCS2B01G223400 chr2D 90.588 85 6 2 769 852 377111442 377111359 7.980000e-21 111.0
4 TraesCS2B01G223400 chr2A 95.433 1051 33 8 886 1930 144608803 144609844 0.000000e+00 1661.0
5 TraesCS2B01G223400 chr2A 90.789 76 5 2 2458 2531 144610205 144610280 1.730000e-17 100.0
6 TraesCS2B01G223400 chr2A 89.583 48 2 2 379 425 700979096 700979141 1.050000e-04 58.4
7 TraesCS2B01G223400 chr4B 73.984 492 86 25 373 846 32505215 32505682 7.810000e-36 161.0
8 TraesCS2B01G223400 chr5B 73.050 564 98 41 337 878 647982337 647981806 1.690000e-32 150.0
9 TraesCS2B01G223400 chr5B 88.889 81 4 3 754 834 609246798 609246723 8.030000e-16 95.3
10 TraesCS2B01G223400 chr5B 75.269 186 29 8 662 833 388679441 388679623 3.760000e-09 73.1
11 TraesCS2B01G223400 chr3A 86.992 123 11 5 731 851 428403537 428403418 1.700000e-27 134.0
12 TraesCS2B01G223400 chr3A 82.178 101 13 4 752 852 694110161 694110066 6.250000e-12 82.4
13 TraesCS2B01G223400 chr6A 81.481 162 25 5 686 846 57765336 57765493 7.920000e-26 128.0
14 TraesCS2B01G223400 chr4D 72.692 509 94 29 346 834 20581573 20582056 7.920000e-26 128.0
15 TraesCS2B01G223400 chr7B 78.605 215 22 17 681 880 627448816 627449021 1.330000e-23 121.0
16 TraesCS2B01G223400 chr7D 84.615 117 14 4 737 850 221588145 221588030 2.220000e-21 113.0
17 TraesCS2B01G223400 chr1B 85.714 105 11 3 731 834 565852235 565852134 1.030000e-19 108.0
18 TraesCS2B01G223400 chr1D 85.227 88 8 4 379 463 297581949 297581864 4.830000e-13 86.1
19 TraesCS2B01G223400 chr1D 79.661 118 19 4 665 779 475920912 475920797 2.250000e-11 80.5
20 TraesCS2B01G223400 chr1A 83.721 86 8 4 338 422 13877277 13877197 2.910000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G223400 chr2B 212942696 212945420 2724 True 5033.0 5033 100.000 1 2725 1 chr2B.!!$R1 2724
1 TraesCS2B01G223400 chr2D 155554821 155556663 1842 True 2837.0 2837 94.462 878 2725 1 chr2D.!!$R1 1847
2 TraesCS2B01G223400 chr2A 144608803 144610280 1477 False 880.5 1661 93.111 886 2531 2 chr2A.!!$F2 1645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
659 660 2.732844 TACACCCGGAACCTTTGTTT 57.267 45.0 0.73 0.0 33.97 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1879 1890 0.399454 AGCCTGCATCAACTGTGAGT 59.601 50.0 0.0 0.0 37.14 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 9.671279 ATTTTGAGTTTTTCTTCATTTTCACCT 57.329 25.926 0.00 0.00 0.00 4.00
99 100 8.477984 TTTGAGTTTTTCTTCATTTTCACCTG 57.522 30.769 0.00 0.00 0.00 4.00
100 101 7.169158 TGAGTTTTTCTTCATTTTCACCTGT 57.831 32.000 0.00 0.00 0.00 4.00
101 102 7.610865 TGAGTTTTTCTTCATTTTCACCTGTT 58.389 30.769 0.00 0.00 0.00 3.16
102 103 8.093927 TGAGTTTTTCTTCATTTTCACCTGTTT 58.906 29.630 0.00 0.00 0.00 2.83
103 104 8.846943 AGTTTTTCTTCATTTTCACCTGTTTT 57.153 26.923 0.00 0.00 0.00 2.43
104 105 8.935844 AGTTTTTCTTCATTTTCACCTGTTTTC 58.064 29.630 0.00 0.00 0.00 2.29
105 106 8.935844 GTTTTTCTTCATTTTCACCTGTTTTCT 58.064 29.630 0.00 0.00 0.00 2.52
106 107 9.500785 TTTTTCTTCATTTTCACCTGTTTTCTT 57.499 25.926 0.00 0.00 0.00 2.52
107 108 8.702163 TTTCTTCATTTTCACCTGTTTTCTTC 57.298 30.769 0.00 0.00 0.00 2.87
108 109 7.403312 TCTTCATTTTCACCTGTTTTCTTCA 57.597 32.000 0.00 0.00 0.00 3.02
109 110 8.010733 TCTTCATTTTCACCTGTTTTCTTCAT 57.989 30.769 0.00 0.00 0.00 2.57
110 111 8.477256 TCTTCATTTTCACCTGTTTTCTTCATT 58.523 29.630 0.00 0.00 0.00 2.57
111 112 9.101655 CTTCATTTTCACCTGTTTTCTTCATTT 57.898 29.630 0.00 0.00 0.00 2.32
112 113 8.647143 TCATTTTCACCTGTTTTCTTCATTTC 57.353 30.769 0.00 0.00 0.00 2.17
113 114 8.477256 TCATTTTCACCTGTTTTCTTCATTTCT 58.523 29.630 0.00 0.00 0.00 2.52
114 115 9.101655 CATTTTCACCTGTTTTCTTCATTTCTT 57.898 29.630 0.00 0.00 0.00 2.52
115 116 9.671279 ATTTTCACCTGTTTTCTTCATTTCTTT 57.329 25.926 0.00 0.00 0.00 2.52
116 117 8.702163 TTTCACCTGTTTTCTTCATTTCTTTC 57.298 30.769 0.00 0.00 0.00 2.62
117 118 7.403312 TCACCTGTTTTCTTCATTTCTTTCA 57.597 32.000 0.00 0.00 0.00 2.69
118 119 8.010733 TCACCTGTTTTCTTCATTTCTTTCAT 57.989 30.769 0.00 0.00 0.00 2.57
119 120 7.922278 TCACCTGTTTTCTTCATTTCTTTCATG 59.078 33.333 0.00 0.00 0.00 3.07
120 121 7.170320 CACCTGTTTTCTTCATTTCTTTCATGG 59.830 37.037 0.00 0.00 0.00 3.66
121 122 7.147672 ACCTGTTTTCTTCATTTCTTTCATGGT 60.148 33.333 0.00 0.00 0.00 3.55
122 123 7.712205 CCTGTTTTCTTCATTTCTTTCATGGTT 59.288 33.333 0.00 0.00 0.00 3.67
123 124 9.101655 CTGTTTTCTTCATTTCTTTCATGGTTT 57.898 29.630 0.00 0.00 0.00 3.27
124 125 9.447157 TGTTTTCTTCATTTCTTTCATGGTTTT 57.553 25.926 0.00 0.00 0.00 2.43
125 126 9.920826 GTTTTCTTCATTTCTTTCATGGTTTTC 57.079 29.630 0.00 0.00 0.00 2.29
126 127 9.664332 TTTTCTTCATTTCTTTCATGGTTTTCA 57.336 25.926 0.00 0.00 0.00 2.69
127 128 9.835389 TTTCTTCATTTCTTTCATGGTTTTCAT 57.165 25.926 0.00 0.00 36.31 2.57
128 129 9.835389 TTCTTCATTTCTTTCATGGTTTTCATT 57.165 25.926 0.00 0.00 32.92 2.57
129 130 9.263538 TCTTCATTTCTTTCATGGTTTTCATTG 57.736 29.630 0.00 0.00 32.92 2.82
130 131 7.966246 TCATTTCTTTCATGGTTTTCATTGG 57.034 32.000 0.00 0.00 32.92 3.16
131 132 6.935771 TCATTTCTTTCATGGTTTTCATTGGG 59.064 34.615 0.00 0.00 32.92 4.12
132 133 5.885449 TTCTTTCATGGTTTTCATTGGGT 57.115 34.783 0.00 0.00 32.92 4.51
133 134 5.885449 TCTTTCATGGTTTTCATTGGGTT 57.115 34.783 0.00 0.00 32.92 4.11
134 135 6.985653 TCTTTCATGGTTTTCATTGGGTTA 57.014 33.333 0.00 0.00 32.92 2.85
135 136 7.552050 TCTTTCATGGTTTTCATTGGGTTAT 57.448 32.000 0.00 0.00 32.92 1.89
136 137 7.610865 TCTTTCATGGTTTTCATTGGGTTATC 58.389 34.615 0.00 0.00 32.92 1.75
137 138 7.454380 TCTTTCATGGTTTTCATTGGGTTATCT 59.546 33.333 0.00 0.00 32.92 1.98
138 139 7.552050 TTCATGGTTTTCATTGGGTTATCTT 57.448 32.000 0.00 0.00 32.92 2.40
139 140 7.552050 TCATGGTTTTCATTGGGTTATCTTT 57.448 32.000 0.00 0.00 32.92 2.52
140 141 7.972301 TCATGGTTTTCATTGGGTTATCTTTT 58.028 30.769 0.00 0.00 32.92 2.27
141 142 8.435982 TCATGGTTTTCATTGGGTTATCTTTTT 58.564 29.630 0.00 0.00 32.92 1.94
198 199 9.541143 TTGTTTTTCTTTCTTTGTTTCTGTTCT 57.459 25.926 0.00 0.00 0.00 3.01
199 200 9.541143 TGTTTTTCTTTCTTTGTTTCTGTTCTT 57.459 25.926 0.00 0.00 0.00 2.52
219 220 9.377312 TGTTCTTTTTATTTGTTTCTTCCTTGG 57.623 29.630 0.00 0.00 0.00 3.61
220 221 9.594478 GTTCTTTTTATTTGTTTCTTCCTTGGA 57.406 29.630 0.00 0.00 0.00 3.53
227 228 9.927668 TTATTTGTTTCTTCCTTGGATTTCATC 57.072 29.630 0.00 0.00 0.00 2.92
228 229 5.627499 TGTTTCTTCCTTGGATTTCATCG 57.373 39.130 0.00 0.00 0.00 3.84
229 230 5.312895 TGTTTCTTCCTTGGATTTCATCGA 58.687 37.500 0.00 0.00 0.00 3.59
230 231 5.181245 TGTTTCTTCCTTGGATTTCATCGAC 59.819 40.000 0.00 0.00 0.00 4.20
231 232 4.551702 TCTTCCTTGGATTTCATCGACA 57.448 40.909 0.00 0.00 0.00 4.35
232 233 5.102953 TCTTCCTTGGATTTCATCGACAT 57.897 39.130 0.00 0.00 0.00 3.06
233 234 5.500234 TCTTCCTTGGATTTCATCGACATT 58.500 37.500 0.00 0.00 0.00 2.71
234 235 5.586243 TCTTCCTTGGATTTCATCGACATTC 59.414 40.000 0.00 0.00 0.00 2.67
235 236 5.102953 TCCTTGGATTTCATCGACATTCT 57.897 39.130 0.00 0.00 0.00 2.40
236 237 5.500234 TCCTTGGATTTCATCGACATTCTT 58.500 37.500 0.00 0.00 0.00 2.52
237 238 6.649155 TCCTTGGATTTCATCGACATTCTTA 58.351 36.000 0.00 0.00 0.00 2.10
238 239 7.109501 TCCTTGGATTTCATCGACATTCTTAA 58.890 34.615 0.00 0.00 0.00 1.85
239 240 7.775093 TCCTTGGATTTCATCGACATTCTTAAT 59.225 33.333 0.00 0.00 0.00 1.40
240 241 8.408601 CCTTGGATTTCATCGACATTCTTAATT 58.591 33.333 0.00 0.00 0.00 1.40
241 242 9.793252 CTTGGATTTCATCGACATTCTTAATTT 57.207 29.630 0.00 0.00 0.00 1.82
243 244 9.787532 TGGATTTCATCGACATTCTTAATTTTC 57.212 29.630 0.00 0.00 0.00 2.29
251 252 9.722056 ATCGACATTCTTAATTTTCTATGTTGC 57.278 29.630 0.00 0.00 30.85 4.17
252 253 8.946085 TCGACATTCTTAATTTTCTATGTTGCT 58.054 29.630 0.00 0.00 30.85 3.91
253 254 9.559958 CGACATTCTTAATTTTCTATGTTGCTT 57.440 29.630 0.00 0.00 0.00 3.91
258 259 9.912634 TTCTTAATTTTCTATGTTGCTTTCTGG 57.087 29.630 0.00 0.00 0.00 3.86
259 260 9.077885 TCTTAATTTTCTATGTTGCTTTCTGGT 57.922 29.630 0.00 0.00 0.00 4.00
260 261 9.696917 CTTAATTTTCTATGTTGCTTTCTGGTT 57.303 29.630 0.00 0.00 0.00 3.67
262 263 8.962884 AATTTTCTATGTTGCTTTCTGGTTTT 57.037 26.923 0.00 0.00 0.00 2.43
263 264 8.962884 ATTTTCTATGTTGCTTTCTGGTTTTT 57.037 26.923 0.00 0.00 0.00 1.94
264 265 8.419076 TTTTCTATGTTGCTTTCTGGTTTTTC 57.581 30.769 0.00 0.00 0.00 2.29
265 266 6.959639 TCTATGTTGCTTTCTGGTTTTTCT 57.040 33.333 0.00 0.00 0.00 2.52
266 267 6.738114 TCTATGTTGCTTTCTGGTTTTTCTG 58.262 36.000 0.00 0.00 0.00 3.02
267 268 4.799564 TGTTGCTTTCTGGTTTTTCTGT 57.200 36.364 0.00 0.00 0.00 3.41
268 269 5.146010 TGTTGCTTTCTGGTTTTTCTGTT 57.854 34.783 0.00 0.00 0.00 3.16
269 270 5.546526 TGTTGCTTTCTGGTTTTTCTGTTT 58.453 33.333 0.00 0.00 0.00 2.83
270 271 5.637387 TGTTGCTTTCTGGTTTTTCTGTTTC 59.363 36.000 0.00 0.00 0.00 2.78
271 272 4.754322 TGCTTTCTGGTTTTTCTGTTTCC 58.246 39.130 0.00 0.00 0.00 3.13
272 273 4.221703 TGCTTTCTGGTTTTTCTGTTTCCA 59.778 37.500 0.00 0.00 0.00 3.53
273 274 4.566759 GCTTTCTGGTTTTTCTGTTTCCAC 59.433 41.667 0.00 0.00 0.00 4.02
274 275 5.624509 GCTTTCTGGTTTTTCTGTTTCCACT 60.625 40.000 0.00 0.00 0.00 4.00
275 276 5.576447 TTCTGGTTTTTCTGTTTCCACTC 57.424 39.130 0.00 0.00 0.00 3.51
276 277 4.855340 TCTGGTTTTTCTGTTTCCACTCT 58.145 39.130 0.00 0.00 0.00 3.24
277 278 5.261216 TCTGGTTTTTCTGTTTCCACTCTT 58.739 37.500 0.00 0.00 0.00 2.85
278 279 5.714806 TCTGGTTTTTCTGTTTCCACTCTTT 59.285 36.000 0.00 0.00 0.00 2.52
279 280 6.210584 TCTGGTTTTTCTGTTTCCACTCTTTT 59.789 34.615 0.00 0.00 0.00 2.27
280 281 6.162777 TGGTTTTTCTGTTTCCACTCTTTTG 58.837 36.000 0.00 0.00 0.00 2.44
281 282 5.063438 GGTTTTTCTGTTTCCACTCTTTTGC 59.937 40.000 0.00 0.00 0.00 3.68
282 283 5.398603 TTTTCTGTTTCCACTCTTTTGCA 57.601 34.783 0.00 0.00 0.00 4.08
283 284 5.596836 TTTCTGTTTCCACTCTTTTGCAT 57.403 34.783 0.00 0.00 0.00 3.96
284 285 5.596836 TTCTGTTTCCACTCTTTTGCATT 57.403 34.783 0.00 0.00 0.00 3.56
285 286 4.935702 TCTGTTTCCACTCTTTTGCATTG 58.064 39.130 0.00 0.00 0.00 2.82
286 287 4.053295 CTGTTTCCACTCTTTTGCATTGG 58.947 43.478 0.00 0.00 0.00 3.16
287 288 3.450457 TGTTTCCACTCTTTTGCATTGGT 59.550 39.130 0.00 0.00 0.00 3.67
288 289 4.081198 TGTTTCCACTCTTTTGCATTGGTT 60.081 37.500 0.00 0.00 0.00 3.67
289 290 4.751767 TTCCACTCTTTTGCATTGGTTT 57.248 36.364 0.00 0.00 0.00 3.27
290 291 4.751767 TCCACTCTTTTGCATTGGTTTT 57.248 36.364 0.00 0.00 0.00 2.43
291 292 5.096443 TCCACTCTTTTGCATTGGTTTTT 57.904 34.783 0.00 0.00 0.00 1.94
333 334 9.914131 ATCTTTTGGTTTTTATTAGCTGTCTTC 57.086 29.630 0.00 0.00 0.00 2.87
334 335 8.073768 TCTTTTGGTTTTTATTAGCTGTCTTCG 58.926 33.333 0.00 0.00 0.00 3.79
335 336 6.870971 TTGGTTTTTATTAGCTGTCTTCGT 57.129 33.333 0.00 0.00 0.00 3.85
336 337 7.966246 TTGGTTTTTATTAGCTGTCTTCGTA 57.034 32.000 0.00 0.00 0.00 3.43
337 338 8.556213 TTGGTTTTTATTAGCTGTCTTCGTAT 57.444 30.769 0.00 0.00 0.00 3.06
338 339 8.556213 TGGTTTTTATTAGCTGTCTTCGTATT 57.444 30.769 0.00 0.00 0.00 1.89
339 340 9.005777 TGGTTTTTATTAGCTGTCTTCGTATTT 57.994 29.630 0.00 0.00 0.00 1.40
340 341 9.836076 GGTTTTTATTAGCTGTCTTCGTATTTT 57.164 29.630 0.00 0.00 0.00 1.82
373 374 9.028284 ACATGATTATCATTTCTTGAACCTTGT 57.972 29.630 4.77 0.00 38.03 3.16
407 408 9.689976 TTATGTCAACTTTTTCCATACACATTG 57.310 29.630 0.00 0.00 0.00 2.82
408 409 7.106439 TGTCAACTTTTTCCATACACATTGT 57.894 32.000 0.00 0.00 0.00 2.71
409 410 8.226819 TGTCAACTTTTTCCATACACATTGTA 57.773 30.769 0.00 0.00 37.24 2.41
410 411 8.132362 TGTCAACTTTTTCCATACACATTGTAC 58.868 33.333 0.00 0.00 35.42 2.90
411 412 8.132362 GTCAACTTTTTCCATACACATTGTACA 58.868 33.333 0.00 0.00 35.42 2.90
412 413 8.855110 TCAACTTTTTCCATACACATTGTACAT 58.145 29.630 0.00 0.00 35.42 2.29
413 414 9.474920 CAACTTTTTCCATACACATTGTACATT 57.525 29.630 0.00 0.00 35.42 2.71
494 495 8.862325 ATCAACACTTTCTAATACATGGTCAA 57.138 30.769 0.00 0.00 0.00 3.18
495 496 8.094798 TCAACACTTTCTAATACATGGTCAAC 57.905 34.615 0.00 0.00 0.00 3.18
496 497 7.717436 TCAACACTTTCTAATACATGGTCAACA 59.283 33.333 0.00 0.00 0.00 3.33
497 498 8.514594 CAACACTTTCTAATACATGGTCAACAT 58.485 33.333 0.00 0.00 41.57 2.71
498 499 8.635765 ACACTTTCTAATACATGGTCAACATT 57.364 30.769 0.00 0.00 37.84 2.71
499 500 9.077885 ACACTTTCTAATACATGGTCAACATTT 57.922 29.630 0.00 0.00 37.84 2.32
500 501 9.912634 CACTTTCTAATACATGGTCAACATTTT 57.087 29.630 0.00 0.00 37.84 1.82
508 509 9.733556 AATACATGGTCAACATTTTCTACTACA 57.266 29.630 0.00 0.00 37.84 2.74
509 510 7.435068 ACATGGTCAACATTTTCTACTACAC 57.565 36.000 0.00 0.00 37.84 2.90
510 511 6.430000 ACATGGTCAACATTTTCTACTACACC 59.570 38.462 0.00 0.00 37.84 4.16
511 512 5.931294 TGGTCAACATTTTCTACTACACCA 58.069 37.500 0.00 0.00 0.00 4.17
512 513 5.761234 TGGTCAACATTTTCTACTACACCAC 59.239 40.000 0.00 0.00 0.00 4.16
513 514 5.107220 GGTCAACATTTTCTACTACACCACG 60.107 44.000 0.00 0.00 0.00 4.94
514 515 5.693104 GTCAACATTTTCTACTACACCACGA 59.307 40.000 0.00 0.00 0.00 4.35
515 516 5.693104 TCAACATTTTCTACTACACCACGAC 59.307 40.000 0.00 0.00 0.00 4.34
516 517 5.204409 ACATTTTCTACTACACCACGACA 57.796 39.130 0.00 0.00 0.00 4.35
517 518 5.790593 ACATTTTCTACTACACCACGACAT 58.209 37.500 0.00 0.00 0.00 3.06
518 519 6.228258 ACATTTTCTACTACACCACGACATT 58.772 36.000 0.00 0.00 0.00 2.71
519 520 6.708949 ACATTTTCTACTACACCACGACATTT 59.291 34.615 0.00 0.00 0.00 2.32
520 521 7.227910 ACATTTTCTACTACACCACGACATTTT 59.772 33.333 0.00 0.00 0.00 1.82
521 522 6.774354 TTTCTACTACACCACGACATTTTC 57.226 37.500 0.00 0.00 0.00 2.29
522 523 5.717078 TCTACTACACCACGACATTTTCT 57.283 39.130 0.00 0.00 0.00 2.52
523 524 6.822667 TCTACTACACCACGACATTTTCTA 57.177 37.500 0.00 0.00 0.00 2.10
524 525 6.615088 TCTACTACACCACGACATTTTCTAC 58.385 40.000 0.00 0.00 0.00 2.59
525 526 5.464030 ACTACACCACGACATTTTCTACT 57.536 39.130 0.00 0.00 0.00 2.57
526 527 5.227908 ACTACACCACGACATTTTCTACTG 58.772 41.667 0.00 0.00 0.00 2.74
527 528 3.399330 ACACCACGACATTTTCTACTGG 58.601 45.455 0.00 0.00 0.00 4.00
528 529 3.070446 ACACCACGACATTTTCTACTGGA 59.930 43.478 0.00 0.00 0.00 3.86
529 530 4.062293 CACCACGACATTTTCTACTGGAA 58.938 43.478 0.00 0.00 0.00 3.53
530 531 4.513692 CACCACGACATTTTCTACTGGAAA 59.486 41.667 0.00 0.00 41.58 3.13
531 532 5.181245 CACCACGACATTTTCTACTGGAAAT 59.819 40.000 0.00 0.00 42.63 2.17
532 533 6.370442 CACCACGACATTTTCTACTGGAAATA 59.630 38.462 0.00 0.00 42.63 1.40
533 534 6.938030 ACCACGACATTTTCTACTGGAAATAA 59.062 34.615 0.00 0.00 42.63 1.40
534 535 7.446013 ACCACGACATTTTCTACTGGAAATAAA 59.554 33.333 0.00 0.00 42.63 1.40
535 536 7.749126 CCACGACATTTTCTACTGGAAATAAAC 59.251 37.037 0.00 0.00 42.63 2.01
536 537 8.286800 CACGACATTTTCTACTGGAAATAAACA 58.713 33.333 0.00 0.00 42.63 2.83
537 538 9.010029 ACGACATTTTCTACTGGAAATAAACAT 57.990 29.630 0.00 0.00 42.63 2.71
538 539 9.840427 CGACATTTTCTACTGGAAATAAACATT 57.160 29.630 0.00 0.00 42.63 2.71
647 648 9.627395 TTTTCAAATGTATGTTTTATACACCCG 57.373 29.630 2.20 0.00 40.19 5.28
648 649 7.323049 TCAAATGTATGTTTTATACACCCGG 57.677 36.000 0.00 0.00 40.19 5.73
649 650 7.110810 TCAAATGTATGTTTTATACACCCGGA 58.889 34.615 0.73 0.00 40.19 5.14
650 651 7.610692 TCAAATGTATGTTTTATACACCCGGAA 59.389 33.333 0.73 0.00 40.19 4.30
651 652 6.930667 ATGTATGTTTTATACACCCGGAAC 57.069 37.500 0.73 0.00 40.19 3.62
652 653 5.184711 TGTATGTTTTATACACCCGGAACC 58.815 41.667 0.73 0.00 40.19 3.62
653 654 4.579647 ATGTTTTATACACCCGGAACCT 57.420 40.909 0.73 0.00 40.19 3.50
654 655 4.370094 TGTTTTATACACCCGGAACCTT 57.630 40.909 0.73 0.00 0.00 3.50
655 656 4.727677 TGTTTTATACACCCGGAACCTTT 58.272 39.130 0.73 0.00 0.00 3.11
656 657 4.519730 TGTTTTATACACCCGGAACCTTTG 59.480 41.667 0.73 0.00 0.00 2.77
657 658 4.370094 TTTATACACCCGGAACCTTTGT 57.630 40.909 0.73 0.00 0.00 2.83
658 659 2.963599 ATACACCCGGAACCTTTGTT 57.036 45.000 0.73 0.00 37.42 2.83
659 660 2.732844 TACACCCGGAACCTTTGTTT 57.267 45.000 0.73 0.00 33.97 2.83
660 661 2.732844 ACACCCGGAACCTTTGTTTA 57.267 45.000 0.73 0.00 33.97 2.01
661 662 3.232720 ACACCCGGAACCTTTGTTTAT 57.767 42.857 0.73 0.00 33.97 1.40
662 663 4.370094 ACACCCGGAACCTTTGTTTATA 57.630 40.909 0.73 0.00 33.97 0.98
663 664 4.074259 ACACCCGGAACCTTTGTTTATAC 58.926 43.478 0.73 0.00 33.97 1.47
664 665 4.202493 ACACCCGGAACCTTTGTTTATACT 60.202 41.667 0.73 0.00 33.97 2.12
665 666 4.763279 CACCCGGAACCTTTGTTTATACTT 59.237 41.667 0.73 0.00 33.97 2.24
666 667 5.242171 CACCCGGAACCTTTGTTTATACTTT 59.758 40.000 0.73 0.00 33.97 2.66
667 668 5.834742 ACCCGGAACCTTTGTTTATACTTTT 59.165 36.000 0.73 0.00 33.97 2.27
668 669 7.003482 ACCCGGAACCTTTGTTTATACTTTTA 58.997 34.615 0.73 0.00 33.97 1.52
669 670 7.670979 ACCCGGAACCTTTGTTTATACTTTTAT 59.329 33.333 0.73 0.00 33.97 1.40
670 671 8.525316 CCCGGAACCTTTGTTTATACTTTTATT 58.475 33.333 0.73 0.00 33.97 1.40
671 672 9.917129 CCGGAACCTTTGTTTATACTTTTATTT 57.083 29.630 0.00 0.00 33.97 1.40
800 801 9.834628 TTTTTCGTATACATGAGAAACATTTCC 57.165 29.630 0.00 0.00 37.92 3.13
801 802 8.786826 TTTCGTATACATGAGAAACATTTCCT 57.213 30.769 0.00 0.00 37.92 3.36
802 803 8.786826 TTCGTATACATGAGAAACATTTCCTT 57.213 30.769 0.00 0.00 37.92 3.36
803 804 8.786826 TCGTATACATGAGAAACATTTCCTTT 57.213 30.769 0.00 0.00 37.92 3.11
804 805 9.878667 TCGTATACATGAGAAACATTTCCTTTA 57.121 29.630 0.00 0.00 37.92 1.85
810 811 9.295825 ACATGAGAAACATTTCCTTTATACACA 57.704 29.630 0.00 0.00 37.92 3.72
824 825 9.619316 TCCTTTATACACATTCAACATTTTTCG 57.381 29.630 0.00 0.00 0.00 3.46
825 826 9.619316 CCTTTATACACATTCAACATTTTTCGA 57.381 29.630 0.00 0.00 0.00 3.71
830 831 6.648502 ACACATTCAACATTTTTCGAAATGC 58.351 32.000 12.12 0.00 42.37 3.56
831 832 6.479660 ACACATTCAACATTTTTCGAAATGCT 59.520 30.769 12.12 0.00 42.37 3.79
832 833 7.011295 ACACATTCAACATTTTTCGAAATGCTT 59.989 29.630 12.12 3.08 42.37 3.91
833 834 7.319380 CACATTCAACATTTTTCGAAATGCTTG 59.681 33.333 12.12 13.51 42.37 4.01
834 835 5.327502 TCAACATTTTTCGAAATGCTTGC 57.672 34.783 12.12 0.00 42.37 4.01
835 836 5.049167 TCAACATTTTTCGAAATGCTTGCT 58.951 33.333 12.12 0.00 42.37 3.91
836 837 6.212235 TCAACATTTTTCGAAATGCTTGCTA 58.788 32.000 12.12 0.00 42.37 3.49
837 838 6.699204 TCAACATTTTTCGAAATGCTTGCTAA 59.301 30.769 12.12 0.46 42.37 3.09
838 839 6.452244 ACATTTTTCGAAATGCTTGCTAAC 57.548 33.333 12.12 0.00 42.37 2.34
839 840 5.982516 ACATTTTTCGAAATGCTTGCTAACA 59.017 32.000 12.12 0.00 42.37 2.41
840 841 6.646240 ACATTTTTCGAAATGCTTGCTAACAT 59.354 30.769 12.12 0.00 42.37 2.71
841 842 7.171337 ACATTTTTCGAAATGCTTGCTAACATT 59.829 29.630 12.12 0.00 42.37 2.71
842 843 7.475771 TTTTTCGAAATGCTTGCTAACATTT 57.524 28.000 12.12 8.88 46.37 2.32
843 844 7.475771 TTTTCGAAATGCTTGCTAACATTTT 57.524 28.000 12.12 0.00 44.36 1.82
844 845 7.475771 TTTCGAAATGCTTGCTAACATTTTT 57.524 28.000 6.47 0.00 44.36 1.94
869 870 8.809159 TTCGAATGCATCTTTAACAATTTTCA 57.191 26.923 0.00 0.00 0.00 2.69
870 871 8.809159 TCGAATGCATCTTTAACAATTTTCAA 57.191 26.923 0.00 0.00 0.00 2.69
871 872 9.254133 TCGAATGCATCTTTAACAATTTTCAAA 57.746 25.926 0.00 0.00 0.00 2.69
872 873 9.519905 CGAATGCATCTTTAACAATTTTCAAAG 57.480 29.630 0.00 0.00 0.00 2.77
873 874 9.815936 GAATGCATCTTTAACAATTTTCAAAGG 57.184 29.630 0.00 0.00 0.00 3.11
874 875 7.188468 TGCATCTTTAACAATTTTCAAAGGC 57.812 32.000 0.00 0.00 0.00 4.35
875 876 6.991531 TGCATCTTTAACAATTTTCAAAGGCT 59.008 30.769 0.00 0.00 0.00 4.58
876 877 7.498570 TGCATCTTTAACAATTTTCAAAGGCTT 59.501 29.630 0.00 0.00 0.00 4.35
1378 1381 0.984230 TCCTCATCAAGAAGGCCGTT 59.016 50.000 0.00 0.00 0.00 4.44
1385 1388 1.745489 AAGAAGGCCGTTGCGATCC 60.745 57.895 0.00 0.00 38.85 3.36
1602 1607 1.067060 GCAGCTTGGACTTCGGTTTTT 59.933 47.619 0.00 0.00 0.00 1.94
1677 1685 4.735132 TACCGCTCGTGTGCCTGC 62.735 66.667 0.00 0.00 0.00 4.85
1806 1817 2.554806 TCGTAGGTGTATTGCTGTCG 57.445 50.000 0.00 0.00 0.00 4.35
1879 1890 5.250235 TCCTGTTTTATTGTTGTTGCGAA 57.750 34.783 0.00 0.00 0.00 4.70
1938 1950 5.582689 AGCCTGGCTATCAACAAATTAAC 57.417 39.130 21.98 0.00 36.99 2.01
1941 1953 4.638421 CCTGGCTATCAACAAATTAACGGA 59.362 41.667 0.00 0.00 0.00 4.69
1944 1956 5.941058 TGGCTATCAACAAATTAACGGAGAA 59.059 36.000 0.00 0.00 0.00 2.87
2022 2042 4.142425 CCATGTGCTTGTGTAATGTGCATA 60.142 41.667 0.00 0.00 36.04 3.14
2030 2050 7.754475 TGCTTGTGTAATGTGCATAATTTGTAG 59.246 33.333 3.26 0.00 0.00 2.74
2143 2163 9.717942 GTAATGATCAACCTGCTATAAAGATCT 57.282 33.333 0.00 0.00 33.44 2.75
2287 2311 8.994429 TGAGATTTTACTTTTGTTTCTTTGCA 57.006 26.923 0.00 0.00 0.00 4.08
2288 2312 9.429359 TGAGATTTTACTTTTGTTTCTTTGCAA 57.571 25.926 0.00 0.00 0.00 4.08
2354 2378 4.455606 CTTGGACTATTGGACTGGAATCC 58.544 47.826 0.00 0.00 39.45 3.01
2365 2389 3.199946 GGACTGGAATCCATGTCCTGTTA 59.800 47.826 28.21 0.00 44.62 2.41
2366 2390 4.324254 GGACTGGAATCCATGTCCTGTTAA 60.324 45.833 28.21 0.00 44.62 2.01
2371 2395 6.969043 TGGAATCCATGTCCTGTTAAGTTAT 58.031 36.000 0.00 0.00 36.03 1.89
2372 2396 8.096621 TGGAATCCATGTCCTGTTAAGTTATA 57.903 34.615 0.00 0.00 36.03 0.98
2374 2398 7.990886 GGAATCCATGTCCTGTTAAGTTATACA 59.009 37.037 0.00 0.00 31.94 2.29
2375 2399 9.561069 GAATCCATGTCCTGTTAAGTTATACAT 57.439 33.333 0.00 0.00 0.00 2.29
2376 2400 9.920946 AATCCATGTCCTGTTAAGTTATACATT 57.079 29.630 0.00 0.00 0.00 2.71
2377 2401 8.958119 TCCATGTCCTGTTAAGTTATACATTC 57.042 34.615 0.00 0.00 0.00 2.67
2412 2629 7.387673 TGGTCAGTAGTAAATCAGTTGTTCATG 59.612 37.037 0.00 0.00 0.00 3.07
2424 2641 5.104569 TCAGTTGTTCATGCCATGTAGGATA 60.105 40.000 4.31 0.00 41.22 2.59
2442 2659 8.247666 GTAGGATACATACCAGGTAGTTCTTT 57.752 38.462 5.31 0.00 42.43 2.52
2446 2663 7.280205 GGATACATACCAGGTAGTTCTTTGTTG 59.720 40.741 5.31 0.00 0.00 3.33
2447 2664 5.937111 ACATACCAGGTAGTTCTTTGTTGT 58.063 37.500 5.31 0.00 0.00 3.32
2451 2668 6.182507 ACCAGGTAGTTCTTTGTTGTGATA 57.817 37.500 0.00 0.00 0.00 2.15
2532 2749 9.941325 ACTAATTTGCCAAAATCACATCATTAA 57.059 25.926 0.00 0.00 34.84 1.40
2583 2800 4.710324 TGGTCGGAGATTTTACTTGTGTT 58.290 39.130 0.00 0.00 40.67 3.32
2585 2802 5.591067 TGGTCGGAGATTTTACTTGTGTTTT 59.409 36.000 0.00 0.00 40.67 2.43
2586 2803 6.140786 GGTCGGAGATTTTACTTGTGTTTTC 58.859 40.000 0.00 0.00 40.67 2.29
2589 2806 7.913821 GTCGGAGATTTTACTTGTGTTTTCTTT 59.086 33.333 0.00 0.00 40.67 2.52
2622 2839 6.266131 ACTATTATTTGGCCTGGAATCAGA 57.734 37.500 3.32 0.00 43.49 3.27
2635 2852 2.979678 GGAATCAGAACCCTGGCCTATA 59.020 50.000 3.32 0.00 40.76 1.31
2657 2874 3.137913 AGCATTTCCTATGGCAGATCAGT 59.862 43.478 0.00 0.00 0.00 3.41
2662 2879 1.727062 CTATGGCAGATCAGTCCCCT 58.273 55.000 0.00 0.00 0.00 4.79
2671 2888 2.186873 ATCAGTCCCCTCTCTGCCCA 62.187 60.000 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 9.671279 AGGTGAAAATGAAGAAAAACTCAAAAT 57.329 25.926 0.00 0.00 0.00 1.82
73 74 8.934825 CAGGTGAAAATGAAGAAAAACTCAAAA 58.065 29.630 0.00 0.00 0.00 2.44
74 75 8.093927 ACAGGTGAAAATGAAGAAAAACTCAAA 58.906 29.630 0.00 0.00 0.00 2.69
75 76 7.610865 ACAGGTGAAAATGAAGAAAAACTCAA 58.389 30.769 0.00 0.00 0.00 3.02
76 77 7.169158 ACAGGTGAAAATGAAGAAAAACTCA 57.831 32.000 0.00 0.00 0.00 3.41
77 78 8.479313 AAACAGGTGAAAATGAAGAAAAACTC 57.521 30.769 0.00 0.00 0.00 3.01
78 79 8.846943 AAAACAGGTGAAAATGAAGAAAAACT 57.153 26.923 0.00 0.00 0.00 2.66
79 80 8.935844 AGAAAACAGGTGAAAATGAAGAAAAAC 58.064 29.630 0.00 0.00 0.00 2.43
80 81 9.500785 AAGAAAACAGGTGAAAATGAAGAAAAA 57.499 25.926 0.00 0.00 0.00 1.94
81 82 9.150348 GAAGAAAACAGGTGAAAATGAAGAAAA 57.850 29.630 0.00 0.00 0.00 2.29
82 83 8.310382 TGAAGAAAACAGGTGAAAATGAAGAAA 58.690 29.630 0.00 0.00 0.00 2.52
83 84 7.835822 TGAAGAAAACAGGTGAAAATGAAGAA 58.164 30.769 0.00 0.00 0.00 2.52
84 85 7.403312 TGAAGAAAACAGGTGAAAATGAAGA 57.597 32.000 0.00 0.00 0.00 2.87
85 86 8.652810 AATGAAGAAAACAGGTGAAAATGAAG 57.347 30.769 0.00 0.00 0.00 3.02
86 87 9.097257 GAAATGAAGAAAACAGGTGAAAATGAA 57.903 29.630 0.00 0.00 0.00 2.57
87 88 8.477256 AGAAATGAAGAAAACAGGTGAAAATGA 58.523 29.630 0.00 0.00 0.00 2.57
88 89 8.652810 AGAAATGAAGAAAACAGGTGAAAATG 57.347 30.769 0.00 0.00 0.00 2.32
89 90 9.671279 AAAGAAATGAAGAAAACAGGTGAAAAT 57.329 25.926 0.00 0.00 0.00 1.82
90 91 9.150348 GAAAGAAATGAAGAAAACAGGTGAAAA 57.850 29.630 0.00 0.00 0.00 2.29
91 92 8.310382 TGAAAGAAATGAAGAAAACAGGTGAAA 58.690 29.630 0.00 0.00 0.00 2.69
92 93 7.835822 TGAAAGAAATGAAGAAAACAGGTGAA 58.164 30.769 0.00 0.00 0.00 3.18
93 94 7.403312 TGAAAGAAATGAAGAAAACAGGTGA 57.597 32.000 0.00 0.00 0.00 4.02
94 95 7.170320 CCATGAAAGAAATGAAGAAAACAGGTG 59.830 37.037 0.00 0.00 0.00 4.00
95 96 7.147672 ACCATGAAAGAAATGAAGAAAACAGGT 60.148 33.333 0.00 0.00 0.00 4.00
96 97 7.212274 ACCATGAAAGAAATGAAGAAAACAGG 58.788 34.615 0.00 0.00 0.00 4.00
97 98 8.652810 AACCATGAAAGAAATGAAGAAAACAG 57.347 30.769 0.00 0.00 0.00 3.16
98 99 9.447157 AAAACCATGAAAGAAATGAAGAAAACA 57.553 25.926 0.00 0.00 0.00 2.83
99 100 9.920826 GAAAACCATGAAAGAAATGAAGAAAAC 57.079 29.630 0.00 0.00 0.00 2.43
100 101 9.664332 TGAAAACCATGAAAGAAATGAAGAAAA 57.336 25.926 0.00 0.00 0.00 2.29
101 102 9.835389 ATGAAAACCATGAAAGAAATGAAGAAA 57.165 25.926 0.00 0.00 33.39 2.52
102 103 9.835389 AATGAAAACCATGAAAGAAATGAAGAA 57.165 25.926 0.00 0.00 35.24 2.52
103 104 9.263538 CAATGAAAACCATGAAAGAAATGAAGA 57.736 29.630 0.00 0.00 35.24 2.87
104 105 8.500773 CCAATGAAAACCATGAAAGAAATGAAG 58.499 33.333 0.00 0.00 35.24 3.02
105 106 7.444792 CCCAATGAAAACCATGAAAGAAATGAA 59.555 33.333 0.00 0.00 35.24 2.57
106 107 6.935771 CCCAATGAAAACCATGAAAGAAATGA 59.064 34.615 0.00 0.00 35.24 2.57
107 108 6.711645 ACCCAATGAAAACCATGAAAGAAATG 59.288 34.615 0.00 0.00 35.24 2.32
108 109 6.840527 ACCCAATGAAAACCATGAAAGAAAT 58.159 32.000 0.00 0.00 35.24 2.17
109 110 6.245890 ACCCAATGAAAACCATGAAAGAAA 57.754 33.333 0.00 0.00 35.24 2.52
110 111 5.885449 ACCCAATGAAAACCATGAAAGAA 57.115 34.783 0.00 0.00 35.24 2.52
111 112 5.885449 AACCCAATGAAAACCATGAAAGA 57.115 34.783 0.00 0.00 35.24 2.52
112 113 7.614494 AGATAACCCAATGAAAACCATGAAAG 58.386 34.615 0.00 0.00 35.24 2.62
113 114 7.552050 AGATAACCCAATGAAAACCATGAAA 57.448 32.000 0.00 0.00 35.24 2.69
114 115 7.552050 AAGATAACCCAATGAAAACCATGAA 57.448 32.000 0.00 0.00 35.24 2.57
115 116 7.552050 AAAGATAACCCAATGAAAACCATGA 57.448 32.000 0.00 0.00 35.24 3.07
116 117 8.620116 AAAAAGATAACCCAATGAAAACCATG 57.380 30.769 0.00 0.00 35.24 3.66
172 173 9.541143 AGAACAGAAACAAAGAAAGAAAAACAA 57.459 25.926 0.00 0.00 0.00 2.83
173 174 9.541143 AAGAACAGAAACAAAGAAAGAAAAACA 57.459 25.926 0.00 0.00 0.00 2.83
193 194 9.377312 CCAAGGAAGAAACAAATAAAAAGAACA 57.623 29.630 0.00 0.00 0.00 3.18
194 195 9.594478 TCCAAGGAAGAAACAAATAAAAAGAAC 57.406 29.630 0.00 0.00 0.00 3.01
201 202 9.927668 GATGAAATCCAAGGAAGAAACAAATAA 57.072 29.630 0.00 0.00 37.38 1.40
202 203 8.243426 CGATGAAATCCAAGGAAGAAACAAATA 58.757 33.333 0.00 0.00 41.39 1.40
203 204 7.039784 TCGATGAAATCCAAGGAAGAAACAAAT 60.040 33.333 0.00 0.00 41.39 2.32
204 205 6.264292 TCGATGAAATCCAAGGAAGAAACAAA 59.736 34.615 0.00 0.00 41.39 2.83
205 206 5.767665 TCGATGAAATCCAAGGAAGAAACAA 59.232 36.000 0.00 0.00 41.39 2.83
206 207 5.181245 GTCGATGAAATCCAAGGAAGAAACA 59.819 40.000 0.00 0.00 41.39 2.83
207 208 5.181245 TGTCGATGAAATCCAAGGAAGAAAC 59.819 40.000 0.00 0.00 41.39 2.78
208 209 5.312895 TGTCGATGAAATCCAAGGAAGAAA 58.687 37.500 0.00 0.00 41.39 2.52
209 210 4.905429 TGTCGATGAAATCCAAGGAAGAA 58.095 39.130 0.00 0.00 41.39 2.52
210 211 4.551702 TGTCGATGAAATCCAAGGAAGA 57.448 40.909 0.00 0.00 41.39 2.87
211 212 5.587844 AGAATGTCGATGAAATCCAAGGAAG 59.412 40.000 0.00 0.00 41.39 3.46
212 213 5.500234 AGAATGTCGATGAAATCCAAGGAA 58.500 37.500 0.00 0.00 41.39 3.36
213 214 5.102953 AGAATGTCGATGAAATCCAAGGA 57.897 39.130 0.00 0.00 41.39 3.36
214 215 5.824904 AAGAATGTCGATGAAATCCAAGG 57.175 39.130 0.00 0.00 41.39 3.61
215 216 9.793252 AAATTAAGAATGTCGATGAAATCCAAG 57.207 29.630 0.00 0.00 41.39 3.61
217 218 9.787532 GAAAATTAAGAATGTCGATGAAATCCA 57.212 29.630 0.00 0.00 41.39 3.41
225 226 9.722056 GCAACATAGAAAATTAAGAATGTCGAT 57.278 29.630 0.00 0.00 0.00 3.59
226 227 8.946085 AGCAACATAGAAAATTAAGAATGTCGA 58.054 29.630 0.00 0.00 0.00 4.20
227 228 9.559958 AAGCAACATAGAAAATTAAGAATGTCG 57.440 29.630 0.00 0.00 0.00 4.35
232 233 9.912634 CCAGAAAGCAACATAGAAAATTAAGAA 57.087 29.630 0.00 0.00 0.00 2.52
233 234 9.077885 ACCAGAAAGCAACATAGAAAATTAAGA 57.922 29.630 0.00 0.00 0.00 2.10
234 235 9.696917 AACCAGAAAGCAACATAGAAAATTAAG 57.303 29.630 0.00 0.00 0.00 1.85
237 238 8.962884 AAAACCAGAAAGCAACATAGAAAATT 57.037 26.923 0.00 0.00 0.00 1.82
238 239 8.962884 AAAAACCAGAAAGCAACATAGAAAAT 57.037 26.923 0.00 0.00 0.00 1.82
239 240 8.257306 AGAAAAACCAGAAAGCAACATAGAAAA 58.743 29.630 0.00 0.00 0.00 2.29
240 241 7.706179 CAGAAAAACCAGAAAGCAACATAGAAA 59.294 33.333 0.00 0.00 0.00 2.52
241 242 7.147915 ACAGAAAAACCAGAAAGCAACATAGAA 60.148 33.333 0.00 0.00 0.00 2.10
242 243 6.321181 ACAGAAAAACCAGAAAGCAACATAGA 59.679 34.615 0.00 0.00 0.00 1.98
243 244 6.507023 ACAGAAAAACCAGAAAGCAACATAG 58.493 36.000 0.00 0.00 0.00 2.23
244 245 6.463995 ACAGAAAAACCAGAAAGCAACATA 57.536 33.333 0.00 0.00 0.00 2.29
245 246 5.343307 ACAGAAAAACCAGAAAGCAACAT 57.657 34.783 0.00 0.00 0.00 2.71
246 247 4.799564 ACAGAAAAACCAGAAAGCAACA 57.200 36.364 0.00 0.00 0.00 3.33
247 248 5.063438 GGAAACAGAAAAACCAGAAAGCAAC 59.937 40.000 0.00 0.00 0.00 4.17
248 249 5.175127 GGAAACAGAAAAACCAGAAAGCAA 58.825 37.500 0.00 0.00 0.00 3.91
249 250 4.221703 TGGAAACAGAAAAACCAGAAAGCA 59.778 37.500 0.00 0.00 35.01 3.91
250 251 4.566759 GTGGAAACAGAAAAACCAGAAAGC 59.433 41.667 0.00 0.00 44.46 3.51
251 252 5.965922 AGTGGAAACAGAAAAACCAGAAAG 58.034 37.500 0.00 0.00 44.46 2.62
252 253 5.714806 AGAGTGGAAACAGAAAAACCAGAAA 59.285 36.000 0.00 0.00 44.46 2.52
253 254 5.261216 AGAGTGGAAACAGAAAAACCAGAA 58.739 37.500 0.00 0.00 44.46 3.02
254 255 4.855340 AGAGTGGAAACAGAAAAACCAGA 58.145 39.130 0.00 0.00 44.46 3.86
255 256 5.582689 AAGAGTGGAAACAGAAAAACCAG 57.417 39.130 0.00 0.00 44.46 4.00
256 257 5.993748 AAAGAGTGGAAACAGAAAAACCA 57.006 34.783 0.00 0.00 44.46 3.67
257 258 5.063438 GCAAAAGAGTGGAAACAGAAAAACC 59.937 40.000 0.00 0.00 44.46 3.27
258 259 5.637387 TGCAAAAGAGTGGAAACAGAAAAAC 59.363 36.000 0.00 0.00 44.46 2.43
259 260 5.788450 TGCAAAAGAGTGGAAACAGAAAAA 58.212 33.333 0.00 0.00 44.46 1.94
260 261 5.398603 TGCAAAAGAGTGGAAACAGAAAA 57.601 34.783 0.00 0.00 44.46 2.29
261 262 5.596836 ATGCAAAAGAGTGGAAACAGAAA 57.403 34.783 0.00 0.00 44.46 2.52
262 263 5.350633 CAATGCAAAAGAGTGGAAACAGAA 58.649 37.500 0.00 0.00 44.46 3.02
263 264 4.202141 CCAATGCAAAAGAGTGGAAACAGA 60.202 41.667 0.00 0.00 44.46 3.41
264 265 4.053295 CCAATGCAAAAGAGTGGAAACAG 58.947 43.478 0.00 0.00 44.46 3.16
265 266 3.450457 ACCAATGCAAAAGAGTGGAAACA 59.550 39.130 0.00 0.00 38.70 2.83
266 267 4.058721 ACCAATGCAAAAGAGTGGAAAC 57.941 40.909 0.00 0.00 33.39 2.78
267 268 4.751767 AACCAATGCAAAAGAGTGGAAA 57.248 36.364 0.00 0.00 33.39 3.13
268 269 4.751767 AAACCAATGCAAAAGAGTGGAA 57.248 36.364 0.00 0.00 33.39 3.53
269 270 4.751767 AAAACCAATGCAAAAGAGTGGA 57.248 36.364 0.00 0.00 33.39 4.02
307 308 9.914131 GAAGACAGCTAATAAAAACCAAAAGAT 57.086 29.630 0.00 0.00 0.00 2.40
308 309 8.073768 CGAAGACAGCTAATAAAAACCAAAAGA 58.926 33.333 0.00 0.00 0.00 2.52
309 310 7.860872 ACGAAGACAGCTAATAAAAACCAAAAG 59.139 33.333 0.00 0.00 0.00 2.27
310 311 7.708998 ACGAAGACAGCTAATAAAAACCAAAA 58.291 30.769 0.00 0.00 0.00 2.44
311 312 7.266922 ACGAAGACAGCTAATAAAAACCAAA 57.733 32.000 0.00 0.00 0.00 3.28
312 313 6.870971 ACGAAGACAGCTAATAAAAACCAA 57.129 33.333 0.00 0.00 0.00 3.67
313 314 8.556213 AATACGAAGACAGCTAATAAAAACCA 57.444 30.769 0.00 0.00 0.00 3.67
314 315 9.836076 AAAATACGAAGACAGCTAATAAAAACC 57.164 29.630 0.00 0.00 0.00 3.27
347 348 9.028284 ACAAGGTTCAAGAAATGATAATCATGT 57.972 29.630 0.00 0.00 37.15 3.21
381 382 9.689976 CAATGTGTATGGAAAAAGTTGACATAA 57.310 29.630 0.00 0.00 0.00 1.90
382 383 8.855110 ACAATGTGTATGGAAAAAGTTGACATA 58.145 29.630 0.00 0.00 0.00 2.29
383 384 7.725251 ACAATGTGTATGGAAAAAGTTGACAT 58.275 30.769 0.00 0.00 0.00 3.06
384 385 7.106439 ACAATGTGTATGGAAAAAGTTGACA 57.894 32.000 0.00 0.00 0.00 3.58
385 386 8.132362 TGTACAATGTGTATGGAAAAAGTTGAC 58.868 33.333 0.00 0.00 35.05 3.18
386 387 8.226819 TGTACAATGTGTATGGAAAAAGTTGA 57.773 30.769 0.00 0.00 35.05 3.18
387 388 9.474920 AATGTACAATGTGTATGGAAAAAGTTG 57.525 29.630 0.00 0.00 35.05 3.16
468 469 9.952030 TTGACCATGTATTAGAAAGTGTTGATA 57.048 29.630 0.00 0.00 0.00 2.15
469 470 8.730680 GTTGACCATGTATTAGAAAGTGTTGAT 58.269 33.333 0.00 0.00 0.00 2.57
470 471 7.717436 TGTTGACCATGTATTAGAAAGTGTTGA 59.283 33.333 0.00 0.00 0.00 3.18
471 472 7.870826 TGTTGACCATGTATTAGAAAGTGTTG 58.129 34.615 0.00 0.00 0.00 3.33
472 473 8.635765 ATGTTGACCATGTATTAGAAAGTGTT 57.364 30.769 0.00 0.00 30.69 3.32
473 474 8.635765 AATGTTGACCATGTATTAGAAAGTGT 57.364 30.769 0.00 0.00 32.82 3.55
474 475 9.912634 AAAATGTTGACCATGTATTAGAAAGTG 57.087 29.630 0.00 0.00 32.82 3.16
482 483 9.733556 TGTAGTAGAAAATGTTGACCATGTATT 57.266 29.630 0.00 0.00 32.82 1.89
483 484 9.162764 GTGTAGTAGAAAATGTTGACCATGTAT 57.837 33.333 0.00 0.00 32.82 2.29
484 485 7.604927 GGTGTAGTAGAAAATGTTGACCATGTA 59.395 37.037 0.00 0.00 32.82 2.29
485 486 6.430000 GGTGTAGTAGAAAATGTTGACCATGT 59.570 38.462 0.00 0.00 32.82 3.21
486 487 6.429692 TGGTGTAGTAGAAAATGTTGACCATG 59.570 38.462 0.00 0.00 32.82 3.66
487 488 6.430000 GTGGTGTAGTAGAAAATGTTGACCAT 59.570 38.462 0.00 0.00 32.64 3.55
488 489 5.761234 GTGGTGTAGTAGAAAATGTTGACCA 59.239 40.000 0.00 0.00 0.00 4.02
489 490 5.107220 CGTGGTGTAGTAGAAAATGTTGACC 60.107 44.000 0.00 0.00 0.00 4.02
490 491 5.693104 TCGTGGTGTAGTAGAAAATGTTGAC 59.307 40.000 0.00 0.00 0.00 3.18
491 492 5.693104 GTCGTGGTGTAGTAGAAAATGTTGA 59.307 40.000 0.00 0.00 0.00 3.18
492 493 5.464057 TGTCGTGGTGTAGTAGAAAATGTTG 59.536 40.000 0.00 0.00 0.00 3.33
493 494 5.603596 TGTCGTGGTGTAGTAGAAAATGTT 58.396 37.500 0.00 0.00 0.00 2.71
494 495 5.204409 TGTCGTGGTGTAGTAGAAAATGT 57.796 39.130 0.00 0.00 0.00 2.71
495 496 6.721571 AATGTCGTGGTGTAGTAGAAAATG 57.278 37.500 0.00 0.00 0.00 2.32
496 497 7.660208 AGAAAATGTCGTGGTGTAGTAGAAAAT 59.340 33.333 0.00 0.00 0.00 1.82
497 498 6.987992 AGAAAATGTCGTGGTGTAGTAGAAAA 59.012 34.615 0.00 0.00 0.00 2.29
498 499 6.518493 AGAAAATGTCGTGGTGTAGTAGAAA 58.482 36.000 0.00 0.00 0.00 2.52
499 500 6.092955 AGAAAATGTCGTGGTGTAGTAGAA 57.907 37.500 0.00 0.00 0.00 2.10
500 501 5.717078 AGAAAATGTCGTGGTGTAGTAGA 57.283 39.130 0.00 0.00 0.00 2.59
501 502 6.527023 CAGTAGAAAATGTCGTGGTGTAGTAG 59.473 42.308 0.00 0.00 0.00 2.57
502 503 6.384224 CAGTAGAAAATGTCGTGGTGTAGTA 58.616 40.000 0.00 0.00 0.00 1.82
503 504 5.227908 CAGTAGAAAATGTCGTGGTGTAGT 58.772 41.667 0.00 0.00 0.00 2.73
504 505 4.625742 CCAGTAGAAAATGTCGTGGTGTAG 59.374 45.833 0.00 0.00 0.00 2.74
505 506 4.281435 TCCAGTAGAAAATGTCGTGGTGTA 59.719 41.667 0.00 0.00 31.66 2.90
506 507 3.070446 TCCAGTAGAAAATGTCGTGGTGT 59.930 43.478 0.00 0.00 31.66 4.16
507 508 3.659786 TCCAGTAGAAAATGTCGTGGTG 58.340 45.455 0.00 0.00 31.66 4.17
508 509 4.345859 TTCCAGTAGAAAATGTCGTGGT 57.654 40.909 0.00 0.00 31.66 4.16
621 622 9.627395 CGGGTGTATAAAACATACATTTGAAAA 57.373 29.630 0.82 0.00 41.10 2.29
622 623 8.244802 CCGGGTGTATAAAACATACATTTGAAA 58.755 33.333 0.00 0.00 41.10 2.69
623 624 7.610692 TCCGGGTGTATAAAACATACATTTGAA 59.389 33.333 0.00 0.00 41.10 2.69
624 625 7.110810 TCCGGGTGTATAAAACATACATTTGA 58.889 34.615 0.00 0.00 41.10 2.69
625 626 7.323049 TCCGGGTGTATAAAACATACATTTG 57.677 36.000 0.00 0.00 41.10 2.32
626 627 7.148035 GGTTCCGGGTGTATAAAACATACATTT 60.148 37.037 0.00 0.00 41.10 2.32
627 628 6.319405 GGTTCCGGGTGTATAAAACATACATT 59.681 38.462 0.00 0.00 41.10 2.71
628 629 5.824097 GGTTCCGGGTGTATAAAACATACAT 59.176 40.000 0.00 0.00 41.10 2.29
629 630 5.045724 AGGTTCCGGGTGTATAAAACATACA 60.046 40.000 0.00 0.00 41.10 2.29
630 631 5.430886 AGGTTCCGGGTGTATAAAACATAC 58.569 41.667 0.00 0.00 41.10 2.39
631 632 5.697082 AGGTTCCGGGTGTATAAAACATA 57.303 39.130 0.00 0.00 41.10 2.29
632 633 4.579647 AGGTTCCGGGTGTATAAAACAT 57.420 40.909 0.00 0.00 41.10 2.71
633 634 4.370094 AAGGTTCCGGGTGTATAAAACA 57.630 40.909 0.00 0.00 35.06 2.83
634 635 4.520111 ACAAAGGTTCCGGGTGTATAAAAC 59.480 41.667 0.00 0.00 0.00 2.43
635 636 4.727677 ACAAAGGTTCCGGGTGTATAAAA 58.272 39.130 0.00 0.00 0.00 1.52
636 637 4.370094 ACAAAGGTTCCGGGTGTATAAA 57.630 40.909 0.00 0.00 0.00 1.40
637 638 4.370094 AACAAAGGTTCCGGGTGTATAA 57.630 40.909 0.00 0.00 29.00 0.98
638 639 4.370094 AAACAAAGGTTCCGGGTGTATA 57.630 40.909 0.00 0.00 35.82 1.47
639 640 2.963599 AACAAAGGTTCCGGGTGTAT 57.036 45.000 0.00 0.00 29.00 2.29
640 641 2.732844 AAACAAAGGTTCCGGGTGTA 57.267 45.000 0.00 0.00 35.82 2.90
641 642 2.732844 TAAACAAAGGTTCCGGGTGT 57.267 45.000 0.00 0.00 35.82 4.16
642 643 4.329392 AGTATAAACAAAGGTTCCGGGTG 58.671 43.478 0.00 0.00 35.82 4.61
643 644 4.645863 AGTATAAACAAAGGTTCCGGGT 57.354 40.909 0.00 0.00 35.82 5.28
644 645 5.970317 AAAGTATAAACAAAGGTTCCGGG 57.030 39.130 0.00 0.00 35.82 5.73
645 646 9.917129 AAATAAAAGTATAAACAAAGGTTCCGG 57.083 29.630 0.00 0.00 35.82 5.14
774 775 9.834628 GGAAATGTTTCTCATGTATACGAAAAA 57.165 29.630 5.56 2.10 36.81 1.94
775 776 9.226606 AGGAAATGTTTCTCATGTATACGAAAA 57.773 29.630 5.56 0.00 36.81 2.29
776 777 8.786826 AGGAAATGTTTCTCATGTATACGAAA 57.213 30.769 5.56 0.00 36.81 3.46
777 778 8.786826 AAGGAAATGTTTCTCATGTATACGAA 57.213 30.769 5.56 0.00 36.81 3.85
778 779 8.786826 AAAGGAAATGTTTCTCATGTATACGA 57.213 30.769 5.56 0.00 36.81 3.43
784 785 9.295825 TGTGTATAAAGGAAATGTTTCTCATGT 57.704 29.630 5.56 0.00 36.81 3.21
798 799 9.619316 CGAAAAATGTTGAATGTGTATAAAGGA 57.381 29.630 0.00 0.00 0.00 3.36
799 800 9.619316 TCGAAAAATGTTGAATGTGTATAAAGG 57.381 29.630 0.00 0.00 0.00 3.11
817 818 7.656707 AATGTTAGCAAGCATTTCGAAAAAT 57.343 28.000 15.66 0.71 35.43 1.82
818 819 7.475771 AAATGTTAGCAAGCATTTCGAAAAA 57.524 28.000 15.66 0.00 40.10 1.94
819 820 7.475771 AAAATGTTAGCAAGCATTTCGAAAA 57.524 28.000 15.66 0.00 42.39 2.29
820 821 7.475771 AAAAATGTTAGCAAGCATTTCGAAA 57.524 28.000 13.91 13.91 42.39 3.46
843 844 9.254133 TGAAAATTGTTAAAGATGCATTCGAAA 57.746 25.926 0.00 0.00 0.00 3.46
844 845 8.809159 TGAAAATTGTTAAAGATGCATTCGAA 57.191 26.923 0.00 0.00 0.00 3.71
845 846 8.809159 TTGAAAATTGTTAAAGATGCATTCGA 57.191 26.923 0.00 0.00 0.00 3.71
846 847 9.519905 CTTTGAAAATTGTTAAAGATGCATTCG 57.480 29.630 7.00 0.00 33.18 3.34
847 848 9.815936 CCTTTGAAAATTGTTAAAGATGCATTC 57.184 29.630 13.15 0.00 33.18 2.67
848 849 8.291740 GCCTTTGAAAATTGTTAAAGATGCATT 58.708 29.630 13.15 0.00 33.18 3.56
849 850 7.662669 AGCCTTTGAAAATTGTTAAAGATGCAT 59.337 29.630 13.15 0.00 33.18 3.96
850 851 6.991531 AGCCTTTGAAAATTGTTAAAGATGCA 59.008 30.769 13.15 0.00 33.18 3.96
851 852 7.425577 AGCCTTTGAAAATTGTTAAAGATGC 57.574 32.000 13.15 9.36 33.18 3.91
852 853 9.044150 TCAAGCCTTTGAAAATTGTTAAAGATG 57.956 29.630 13.15 9.48 40.26 2.90
853 854 9.783081 ATCAAGCCTTTGAAAATTGTTAAAGAT 57.217 25.926 13.15 0.93 45.82 2.40
854 855 9.044150 CATCAAGCCTTTGAAAATTGTTAAAGA 57.956 29.630 13.15 0.00 45.82 2.52
855 856 8.284693 CCATCAAGCCTTTGAAAATTGTTAAAG 58.715 33.333 6.01 6.01 45.82 1.85
856 857 7.228308 CCCATCAAGCCTTTGAAAATTGTTAAA 59.772 33.333 0.00 0.00 45.82 1.52
857 858 6.709846 CCCATCAAGCCTTTGAAAATTGTTAA 59.290 34.615 0.00 0.00 45.82 2.01
858 859 6.183361 ACCCATCAAGCCTTTGAAAATTGTTA 60.183 34.615 0.00 0.00 45.82 2.41
859 860 5.065235 CCCATCAAGCCTTTGAAAATTGTT 58.935 37.500 0.00 0.00 45.82 2.83
860 861 4.102996 ACCCATCAAGCCTTTGAAAATTGT 59.897 37.500 0.00 0.00 45.82 2.71
861 862 4.644498 ACCCATCAAGCCTTTGAAAATTG 58.356 39.130 0.00 0.00 45.82 2.32
862 863 4.347583 TGACCCATCAAGCCTTTGAAAATT 59.652 37.500 0.00 0.00 45.82 1.82
863 864 3.903090 TGACCCATCAAGCCTTTGAAAAT 59.097 39.130 0.00 0.00 45.82 1.82
864 865 3.303938 TGACCCATCAAGCCTTTGAAAA 58.696 40.909 0.00 0.00 45.82 2.29
865 866 2.892852 CTGACCCATCAAGCCTTTGAAA 59.107 45.455 0.00 0.00 45.82 2.69
866 867 2.517959 CTGACCCATCAAGCCTTTGAA 58.482 47.619 0.00 0.00 45.82 2.69
867 868 1.887956 GCTGACCCATCAAGCCTTTGA 60.888 52.381 0.00 0.00 46.67 2.69
868 869 0.529378 GCTGACCCATCAAGCCTTTG 59.471 55.000 0.00 0.00 33.30 2.77
869 870 0.962356 CGCTGACCCATCAAGCCTTT 60.962 55.000 0.00 0.00 33.30 3.11
870 871 1.377725 CGCTGACCCATCAAGCCTT 60.378 57.895 0.00 0.00 33.30 4.35
871 872 2.249413 CTCGCTGACCCATCAAGCCT 62.249 60.000 0.00 0.00 33.30 4.58
872 873 1.817099 CTCGCTGACCCATCAAGCC 60.817 63.158 0.00 0.00 33.30 4.35
873 874 1.817099 CCTCGCTGACCCATCAAGC 60.817 63.158 0.00 0.00 33.30 4.01
874 875 1.153289 CCCTCGCTGACCCATCAAG 60.153 63.158 0.00 0.00 33.30 3.02
875 876 2.669133 CCCCTCGCTGACCCATCAA 61.669 63.158 0.00 0.00 33.30 2.57
876 877 3.083349 CCCCTCGCTGACCCATCA 61.083 66.667 0.00 0.00 0.00 3.07
1038 1041 0.399806 GAGGGAGATGGGGAGAAGCT 60.400 60.000 0.00 0.00 0.00 3.74
1160 1163 2.571216 CGGACGTCTTGACCCAGGT 61.571 63.158 16.46 0.00 0.00 4.00
1378 1381 3.390521 AGGTGCTTCCGGATCGCA 61.391 61.111 21.07 21.07 41.99 5.10
1385 1388 1.544825 TTCCTCTCCAGGTGCTTCCG 61.545 60.000 0.00 0.00 41.28 4.30
1602 1607 6.148811 GCATTGCTTACTGGAGTACTTAACAA 59.851 38.462 0.16 0.79 0.00 2.83
1677 1685 7.118390 CCCACTAAACTCTGAAATACTTCTGTG 59.882 40.741 0.00 0.00 33.46 3.66
1879 1890 0.399454 AGCCTGCATCAACTGTGAGT 59.601 50.000 0.00 0.00 37.14 3.41
1919 1930 5.584649 TCTCCGTTAATTTGTTGATAGCCAG 59.415 40.000 0.00 0.00 0.00 4.85
1967 1987 7.024171 GCTCATTAGAAAGCCTAAACAAGAAC 58.976 38.462 0.00 0.00 40.45 3.01
2058 2078 7.362056 GGCACATGTTTCATGTTTGTATACTCT 60.362 37.037 11.89 0.00 0.00 3.24
2081 2101 2.907634 TCACTCAAGTTGTTAACGGCA 58.092 42.857 2.11 0.00 36.23 5.69
2082 2102 3.496884 TCATCACTCAAGTTGTTAACGGC 59.503 43.478 2.11 0.00 36.23 5.68
2115 2135 8.034313 TCTTTATAGCAGGTTGATCATTACCT 57.966 34.615 12.55 12.55 45.54 3.08
2153 2173 6.533185 CGGTGTGATTTTGGCAAATTAAATC 58.467 36.000 14.29 13.55 38.27 2.17
2155 2175 4.212214 GCGGTGTGATTTTGGCAAATTAAA 59.788 37.500 14.29 0.00 32.35 1.52
2210 2234 2.386113 ACCTAAGGTTACCCTCCACTCT 59.614 50.000 0.00 0.00 41.56 3.24
2212 2236 2.113052 TGACCTAAGGTTACCCTCCACT 59.887 50.000 0.00 0.00 41.56 4.00
2275 2299 4.799564 AGTCCAAGTTGCAAAGAAACAA 57.200 36.364 0.00 0.00 0.00 2.83
2354 2378 7.993183 AGGGAATGTATAACTTAACAGGACATG 59.007 37.037 0.00 0.00 0.00 3.21
2374 2398 7.504926 TTACTACTGACCAAACATAGGGAAT 57.495 36.000 0.00 0.00 0.00 3.01
2375 2399 6.938698 TTACTACTGACCAAACATAGGGAA 57.061 37.500 0.00 0.00 0.00 3.97
2376 2400 6.938698 TTTACTACTGACCAAACATAGGGA 57.061 37.500 0.00 0.00 0.00 4.20
2377 2401 7.335627 TGATTTACTACTGACCAAACATAGGG 58.664 38.462 0.00 0.00 0.00 3.53
2424 2641 5.763204 CACAACAAAGAACTACCTGGTATGT 59.237 40.000 7.07 4.90 0.00 2.29
2442 2659 4.020573 CCCTACACAGGAAGTATCACAACA 60.021 45.833 0.00 0.00 45.91 3.33
2446 2663 4.024670 ACTCCCTACACAGGAAGTATCAC 58.975 47.826 0.00 0.00 45.91 3.06
2447 2664 4.332683 ACTCCCTACACAGGAAGTATCA 57.667 45.455 0.00 0.00 45.91 2.15
2451 2668 4.684724 TCATTACTCCCTACACAGGAAGT 58.315 43.478 0.00 0.00 45.91 3.01
2532 2749 5.815581 TGGTAGAGGTGCAAACTAATGAAT 58.184 37.500 0.00 0.00 0.00 2.57
2540 2757 4.156008 CCAAATACTGGTAGAGGTGCAAAC 59.844 45.833 0.00 0.00 40.78 2.93
2585 2802 8.311109 GCCAAATAATAGTTCCAAGGAAAAAGA 58.689 33.333 2.55 0.00 35.75 2.52
2586 2803 7.549134 GGCCAAATAATAGTTCCAAGGAAAAAG 59.451 37.037 2.55 0.00 35.75 2.27
2589 2806 6.154363 CAGGCCAAATAATAGTTCCAAGGAAA 59.846 38.462 5.01 0.00 35.75 3.13
2593 2810 5.200483 TCCAGGCCAAATAATAGTTCCAAG 58.800 41.667 5.01 0.00 0.00 3.61
2622 2839 2.158460 GGAAATGCTATAGGCCAGGGTT 60.158 50.000 5.01 0.00 40.92 4.11
2635 2852 3.137913 ACTGATCTGCCATAGGAAATGCT 59.862 43.478 0.00 0.00 0.00 3.79
2657 2874 1.061424 TCATTATGGGCAGAGAGGGGA 60.061 52.381 0.00 0.00 0.00 4.81
2662 2879 9.812347 ATTTTATTGTATCATTATGGGCAGAGA 57.188 29.630 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.