>input_sequence_70579
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------------------------------------------CCCCATTTTTGCTAGGTTTCCCTCTCCGCCGCCACAGC
AGCTTCTCCCCATCTCCCTCCTCGCCGCCGCCCTCCGCTCGCCGCTCGCCGCCATGGGACGCATGCACAGCAACGGGAAG
GGCATGTCGTCCTCGGTGATCCCCTACAAGCGGGAGGCCCCGACCTGGGTCAAGACGTCCGCGCCGGACGTGGAGGAGAT
CATCGTCCGCGCCGCCAAGAAGGGCCAGCTGCCGTCGCAGATCGGCGCCCTGCTCCGCGACGGCTACGGCATCCCGCTGT
CCAAGGCCGTCACCGGCGCCAAGATCGTGCGCCTGCTCAAGGCGCGCGGGCTGGCGCCGGAGATGCCCGAGGACCTCTAC
TTCCTCATCAAGAAGGCCGTTGCGATCCGGAAGCACCTGGAGAGGAACAGGTCGGACGTGGACGCCAAGTTCCGCCTCAT
CCTCGTCGAGAGCAGGGTCCACCGCCTCACCCGCTACTACCGCCTCACCAAGAAGATGCCCGCCGCCTGGAAGTACGAGT
CCACCACCGCGAGCACTCTCGTCGCCTGATTCGGTTAAGCTTCGGTTCTTTGACGTAATTCTCTGCAGCTT--GGACTTC
GGTTTTTTGTTAAGTACTCCAGTAAGCAATGCTTTTTGGG-ATGTAAGCTGTTAAACCTATCAGCTACCGCTCGTGTG--
CCTGCACAGAAGTATTTC-AGAGTTTAGTGGGACTGGATCAGGTTTTGATCCT---------------------------
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>chr2B_1_TraesCS2B01G223400
TGCCATTATTTTCCTTTTTCTTTTTTCCTTTATTTTTTATTTTTGTTTTTCTGTTTATTAATAGGTTTCTTTATTTTGAG
TTTTTCTTCATTTTCACCTGTTTTCTTCATTTCTTTCATGGTTTTCATTGGGTTATCTTTTTTATTCAATTTCTTATTTC
TTTCTTGGTTTTTTGTTTTTCTTTCTTTGTTTCTGTTCTTTTTATTTGTTTCTTCCTTGGATTTCATCGACATTCTTAAT
TTTCTATGTTGCTTTCTGGTTTTTCTGTTTCCACTCTTTTGCATTGGTTTTTTGGGGTTTCCAAATTATCTTTTGGTTTT
TATTAGCTGTCTTCGTATTTTTTAAATACATGATTATCATTTCTTGAACCTTGTATACTTTTTATGTCAACTTTTTCCAT
ACACATTGTACATTAATTTTATATATTTAATATCTTTTAATACATATTTAAAAAAATTTCAAATATAATATCAACACTTT
CTAATACATGGTCAACATTTTCTACTACACCACGACATTTTCTACTGGAAATAAACATTTCTTCAGATACAATGTATTTT
TCGTATATATCAAGAACATTTTTATATACATGTTTAACATTTTTTATATATAGAATTAGCCTTTTCAAATGTATGTTTTA
TACACCCGGAACCTTTGTTTATACTTTTATTTAATGTATATTGTACATTTTTCGTATATACTATAAACATTTTTAATATG
TTTTAAATACTTTTTAAATACAGGATCAACATTTTTTCATACACATTGTATATATTTTTCGTATACATGAGAAACATTTC
CTTTATACACATTCAACATTTTTCGAAATGCTTGCTAACATTTTTTCGAATGCATCTTTAACAATTTTCAAAGGCTTGAT
GGGTCAGCGAGGGGGATATTGGGTCGCGATC--GCGGTATTCGCGTCCAAAACATTATGGGCTAAGCCCAGTTTGCAACG
CGAGCAGATATAACAGACTGACTCTGGCAGGGAAGGGTACCGCCCCATTTTTGCTAGGTTTCCCTCTCCGCCGCCACAGC
AGCTTCTCCCCATCTCCCTCCTCGCCGCCGCCCTCCGCTCGCCGCTCGCCGCCATGGGACGCATGCACAGCAACGGGAAG
GGCATGTCGTCCTCGGTGATCCCCTACAAGCGGGAGGCCCCGACCTGGGTCAAGACGTCCGCGCCGGACGTGGAGGAGAT
CATCGTCCGCGCCGCCAAGAAGGGCCAGCTGCCGTCGCAGATCGGCGCCCTGCTCCGCGACGGCTACGGCATCCCGCTGT
CCAAGGCCGTCACCGGCGCCAAGATCGTGCGCCTGCTCAAGGCGCGCGGGCTGGCGCCGGAGATGCCCGAGGACCTCTAC
TTCCTCATCAAGAAGGCCGTTGCGATCCGGAAGCACCTGGAGAGGAACAGGTCGGACGTGGACGCCAAGTTCCGCCTCAT
CCTCGTCGAGAGCAGGGTCCACCGCCTCACCCGCTACTACCGCCTCACCAAGAAGATGCCCGCCGCCTGGAAGTACGAGT
CCACCACCGCGAGCACTCTCGTCGCCTGATTCGGTTAAGCTTCGGTTCTTTGACGTAATTCTCTGCAGCTT--GGACTTC
GGTTTTTTGTTAAGTACTCCAGTAAGCAATGCTTTTTGGG-ATGTAAGCTGTTAAACCTATCAGCTACCGCTCGTGTG--
CCTGCACAGAAGTATTTC-AGAGTTTAGTGGGACTGGATCAGGTTTTGATCCTTGGAAGTTGAGACTATTTACAATGTGT
TGGTTTCC--TAACTTCGAGTAGGCTGGTAATGCTCTTCGTAGGTGTATTGCTGTCGCAAATCCTGCAGTGGAGTATGAA
ACTTGCTAATGCACTCTTCATGTTTTATCCTGTTTTATTGTTGTTGCGAACTCACAGTTGATGCAGGCTAGATTTACTTT
CTATATAGCCT-GGCTATCAACAAATTAACGGAGAAAGGTCTT--------TTTTGGAATGTTTCCGTTCTTGTTTAGGC
TTTCTAATGAGCTACTATCCATGTGCTTGTGTAATGTGCATAATTTGTAGCTTAAACATTAAGCATATAACCCAATAAGA
GTATACAAACATGAAACATGTGCCGTTAACAACTTGAGTGATGAAATCTTCATCAGGTAATGATCAACCTGCTATAAAGA
TCTTAATCAAATGATTTAATTTGCCAAAATCACACCGCTTTTGCAAAACCAGTT----CTTTTGAACTGAAGAAGAGTGG
AGGGTAACCTTAGGTCAATAATTTGCACCTTTACTAGTATTGGTCTGAGATTTTACTTTTGTTTCTTTGCAACTTGGACT
ATTGGTCTGGAGGTTTTACTTGCGTTTCTTTGTTCCTTGGACTATTGGACTGGAATCCATGTCCTGTTAAGTTATACATT
C-------------------------------------------------------------------------------
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----------------------------------CCTATGTTTGGTCAGTAGTAAATCAGTTGTTCATGCCATGTAGGAT
ACATACCAGGTAGTTCTTTGTTGTGATACTTCCTGTGTAGGGAGTAATGATGTAACCTGCAATAAATACCTTGATCAAAT
GAACTAATTTGCCAAAATCACATCATTAATTCATTAGTTTGCACCTCTACCAGTATTTGGTCGGAGATTTTACTTGTGTT
TTCTTTTTCCTTGGAACTATTATTTGGCCTGGAATCAGAACCCTGGCCTATAGCATTTCCTATGGCAGATCAGTCCCCTC
TCTGCCCATAATGATACAATAAAATTACCAACAAATGTTTAAATTATCAGTTAGCTTCCAA
>chr2D_878
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-----------------------------------------------------------------------------GAT
GGGTCAACGAGGGGGAGATTGGGTCCCGATCTCGCGGTATTCGCGTCCAAAACATTATGGGCTAAGCCCAGTTTGCAACG
CGAGCAGATATGACAGACTGACTCTGGCAGGGAAGGGTACTGCCCCATTTTTGCTAGGTTTCCCTCTCCGCCGCCACAGC
CGCTTCTCCCCATCTCCCTCCTCGCCGCCGCCCC-------CCGCTCGCCGCCATGGGACGCATGCACAGCAACGGGAAG
GGCATGTCGTCCTCGGTGATCCCCTACAAGCGGGAGGCCCCGGCCTGGGTCAAGACGTCCGCGCCGGACGTGGAGGAGAT
CATCGTCCGCGCCGCCAAGAAGGGTCAGCTGCCGTCGCAGATCGGCGCCCTGCTCCGCGACGGCTACGGCATCCCGCTGT
CCAAGGCCGTCACCGGCGCCAAGATCGTGCGCCTCCTCAAGGCCCGCGGGCTGGCGCCGGAGATGCCCGAGGACCTCTAC
TTCCTCATCAAGAAGGCCGTCGCGATCAGGAAGCACCTGGAGAGGAACAGGTCGGACGTGGACGCCAAGTTCCGCCTCAT
CCTCGTCGAGAGCCGGGTCCACCGCCTCACCCGCTACTACCGCCTCACCAAGAAGATGCCCGCCGCCTGGAAGTACGAGT
CCACCACCGCGAGCACTCTCGTCGCCTGATTCGGTTAAGCTTCGGTTCCTTGACGTAATTCTCTGCAGCTTT-GGACTTC
GGTTTTGTGTTAAGT-----AGTAAGCAATGCTTTTTGGGGTTGTAAGCTGTTAAACATATCAGCTACCGCTCGTGTGTG
CCTGGACAGAAGTATTTCGAGAGTTTAGTGGGACTGGATCAGGTTTTGATCCTTGGAAGTTGAGACTATTTACAATGTGT
TGGTTTCC--TAACTTCGAGTAGGCTGGTAATGCTCTTCGTAGGTGTATTGCTGTCACAAATCCTGCAGTGGAGTAAAAA
ACTTGCTAATGCACTCTTCATGTTTTATCCTGTTTTATTGTTGTTGCGAGCTCACTGTTGATGCAGGCTAGGTTTACTTT
CTATATAGC-T-GGCTATCAACAAATTAAGGGGGAGAGGTCTT--------TTTTGGAATGTTTTCATTCTTGTTTAGGC
TTTCTAATGAGCTACTATCCATGTGCTTGTGTAATGTGCATCATTTGTAACTTAAACATTAAGCATATAACCCTATATGA
GTATACAAACATGAAACATGCACCGTTAACAACTTGAGTGATGAAATCTTCATCCGGTAATGATCAACCTGCTATGAAGA
TCATAATCAAATTAATTAATTTGCCAAAATCACACCGCTTTTGCAAAACCAGTTCCTCCTTTTGAACTGAAGAGGGGTGG
AGGGTAACCTTAGGTCAATAATTTGCACCTTTACTAGTATTGGTCTGAGATTTTACTTATGTTTCTTTGCTTCTTGGACT
ATTGGTCTGGAGGTTTTACTTGCGTTTCTTTGTTCCTTGGACTATTGGACTGGAATCGATGTCCTGTTCTGTTACGC---
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--------------------------------TTCCTACGTTTGATCAGTAGTAAATCAGTTGTTCATACCATGTAGGAT
GCATACCAGGTAGTTCTTGGTTCCGATGCTTCCTGTGTAGGCAGTAATTATGTAACCTGCAATAAATACCTTGATCAAAT
GAACTAATTTGCCAAAATCACATCATTAGTTCATTAATTTGCACCTCTACCAGTATTTGGTCGGAGATTTTACTTGTGTA
TCTTTGTTCGTTGGAACTATTATTTGGCCTGGAATCAGTACCCTGGCCTATTGCATTTCCTATGGCAGATCAG-CCCCCC
TCTGCCCGTAATGATACAATAAAATTTCTAATGAAAGTTTAAATTATCAGATAGCTTCCAA
>chr2A_886
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-----AGCGAGGGGCATATTGGGTCGCGATC--GCTGTATTCGCGTCCAAAACATCATGGGCTAAGCCCAGTTTGCAACG
CGAGCAGATATAACAGACTGACTCCGGCAGGGAAGGGTTCCGCCCCATTTTTGCTAGGTTTCCCTCTCCGCCGCCACAGC
CGCTTCTCCCCATCTCCCTCCTCGCCGCCGCTCTCTGCTCTCCGCTCGCCGCCATGGGACGCATGCACAGCAACGGGAAG
GGCATGTCGTCCTCGGTGATGCCCTACAAGCGGGAGGCCCCGGCCTGGGTCAAGACGTCCGCGCCGGACGTGGAGGAGAT
CATCGTGCGCGCCGCCAAGAAGGGCCAGCTGCCGTCGCAGATCGGCGCCCTGCTCCGCGACGGCTACGGCATCCCGCTCT
CCAAGGCCGTTACCGGCGCCAAGATCGTGCGCCTGCTCAAGGCGCGCGGGCTGGCGCCGGAGATGCCCGAGGACCTCTAC
TTCCTCATCAAGAAGGCCGTCGCGATCAGGAAGCACCTGGAGAGGAACAGGTCGGACGTGGACGCCAAGTTCCGCCTCAT
CCTCGTCGAGAGCAGGGTCCACCGCCTCACCCGCTACTACCGCCTCACCAAGAAGATTCCCGCCGCCTGGAAGTACGAGT
CCACCACCGCGAGCACTCTCGTCGCCTGATTTGGTTAAG---CGGTTCTTTGACGTAATTCTCTGCAGCTTTTGGACTTC
GGTTTTGTGTTAAGT-----AGTAAGCAATGCTTTTTGGGGATGTAAGCTGTTAAACCTATCAGCTACCGCTCGTGTG--
CCTGGACAGAAGTATTTCGAGAGTTTAGTGGGACTGGATCAGGTTCTGATCCTTGGAAGTTGAGACTATTTACAATGTGT
TGGTGTTTGGTAACTTCGAGTAGGCTGGTAATGCTCTTCGTAGGTGTATTGCTATCACAAATCCTGCAGTGGAGTAAGAA
ACTTGCTAATGCACTCTTCATGTTTTATCCTGTTTTATTGTTGTTGCGAGCTCG-AGTTGTTGTAGGCTAGATTTAATTT
CTATAAAGC-TTGGCTATCAAAGTTAAGGAGCCTACAGAGAGATTAGTCAATTTGGGAATTTTGCCATTCTTATTTAGGC
TTTCTAACGAG---------------------------------------------------------------------
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-----------------------------------------CTATTGGGCTGGAATATGTGTACTGTTCTACTCCCTCCG
TTCCTAAATATAGGTCTTTTTACATTTCAAATGGACTACAACATACGGATGTGTGTATGTAGACATATTTTAGAGTGTAG
ATTCACTCATTTAGCTCCGGATGCTGTCACTTGTTGGAATCTCTAGAAAGACTTATATTTGGGAACGGAGGGAGTATTAC
CTTTCCTATGTTAGGTACCCCTCAAAAAAAAATTCCTATGTTAAGTCAGTGGTAAATCAGTTGTTCAAAGCATGTGGGAT
CCATACCAGGTTGTGTAAGAA--------------------GAGTAATGACGTAACCTGTAATAAATACCTTGATCAAAT
GAACTAATTTACAAAAATCACATCATT-----------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
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S----------------------------------S----S---------------------------------------
------------------------------------------S-------------------------------------
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--------------------S------S----------------------------------------------------
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------S--------SSSSS------------------------------------------------------------
----S---------------------------------------------------------------------------
--------------------------------------------------------S-------------------S---
-------------------------------------------------S------------------------------
---------S-------------------S--S--S------------------------------S-------------
-----------------------------------------S-------S-----------------------S---S--
--------------------SS--------------------------------S--------------------S----
--S---------S-S----------------------------------------------------------S-S----
----------------------------------------------------------S-----------SS--------
---------------------------------------------------------S----------SS----SS-SSS
S-------------------------------------------------------------------------------
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--------------------------------------------------------------------S-----------
S-----------------S---SS---S----------------------------------------------------
----------------------------S-------S------------------------------------------S
-SS--S---S----------------------------S------------S---------------------S----S-
-------S------------------S-S--SS--S--------------S----------
>forward_660
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TACACCCGGAACCTTTGTTT------------------------------------------------------------
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>reverse_1890
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-------------------------------------------------ACTCACAGTTGATGCAGGCT-----------
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