Multiple sequence alignment - TraesCS2B01G222900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G222900 chr2B 100.000 3985 0 0 1 3985 212774050 212770066 0.000000e+00 7360.0
1 TraesCS2B01G222900 chr2B 76.879 1384 250 52 1192 2539 10597515 10598864 0.000000e+00 719.0
2 TraesCS2B01G222900 chr2B 80.964 830 115 27 1721 2543 10357016 10357809 5.660000e-173 617.0
3 TraesCS2B01G222900 chr2D 93.296 3237 140 33 4 3199 155478627 155475427 0.000000e+00 4704.0
4 TraesCS2B01G222900 chr2D 78.781 853 136 28 1739 2574 1588814 1589638 7.580000e-147 531.0
5 TraesCS2B01G222900 chr2D 90.559 286 11 3 3473 3747 155475295 155475015 8.140000e-97 364.0
6 TraesCS2B01G222900 chr2D 93.133 233 16 0 3749 3981 155470949 155470717 3.810000e-90 342.0
7 TraesCS2B01G222900 chr2D 100.000 28 0 0 3245 3272 155475423 155475396 7.000000e-03 52.8
8 TraesCS2B01G222900 chr2A 89.037 1651 85 42 3 1605 144849036 144850638 0.000000e+00 1958.0
9 TraesCS2B01G222900 chr2A 95.542 1144 48 3 1607 2747 144850687 144851830 0.000000e+00 1827.0
10 TraesCS2B01G222900 chr2A 89.293 495 30 9 2736 3211 144852363 144852853 2.050000e-167 599.0
11 TraesCS2B01G222900 chr7B 90.217 184 9 1 3473 3647 708066202 708066385 8.610000e-57 231.0
12 TraesCS2B01G222900 chr1A 84.793 217 30 2 3761 3975 57397659 57397874 8.670000e-52 215.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G222900 chr2B 212770066 212774050 3984 True 7360.000000 7360 100.000000 1 3985 1 chr2B.!!$R1 3984
1 TraesCS2B01G222900 chr2B 10597515 10598864 1349 False 719.000000 719 76.879000 1192 2539 1 chr2B.!!$F2 1347
2 TraesCS2B01G222900 chr2B 10357016 10357809 793 False 617.000000 617 80.964000 1721 2543 1 chr2B.!!$F1 822
3 TraesCS2B01G222900 chr2D 155475015 155478627 3612 True 1706.933333 4704 94.618333 4 3747 3 chr2D.!!$R2 3743
4 TraesCS2B01G222900 chr2D 1588814 1589638 824 False 531.000000 531 78.781000 1739 2574 1 chr2D.!!$F1 835
5 TraesCS2B01G222900 chr2A 144849036 144852853 3817 False 1461.333333 1958 91.290667 3 3211 3 chr2A.!!$F1 3208

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 874 0.031585 CGTGGATCCTAAATCGCGGA 59.968 55.0 14.23 0.0 0.00 5.54 F
826 876 0.031585 TGGATCCTAAATCGCGGACG 59.968 55.0 14.23 0.0 42.01 4.79 F
1266 1322 0.532640 TTGCTGTGAAGAAGCTCGCA 60.533 50.0 0.00 0.0 41.42 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2721 2869 2.070783 CAAACATGAATGCAAGTGGGC 58.929 47.619 0.0 0.0 0.0 5.36 R
2924 3621 7.515528 CGTGTTAGCATCGGTCGAAATATAAAA 60.516 37.037 0.0 0.0 0.0 1.52 R
3332 4045 0.034616 GGCGGAATGAGAGGAGATGG 59.965 60.000 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.295825 ACCTGTCAAATTATTCTGTTGATAACA 57.704 29.630 0.00 0.00 39.52 2.41
156 159 9.729023 TTATTTTTCTTGTACATGTGTGTTCTG 57.271 29.630 9.11 0.00 39.77 3.02
186 189 2.563702 AGTTGTTGCCAAAAATGCTGG 58.436 42.857 0.00 0.00 36.99 4.85
187 190 2.093021 AGTTGTTGCCAAAAATGCTGGT 60.093 40.909 0.00 0.00 36.24 4.00
188 191 2.682352 GTTGTTGCCAAAAATGCTGGTT 59.318 40.909 0.00 0.00 36.24 3.67
255 262 6.183359 GCGTGTACTTCTAATCTGACAGTTTC 60.183 42.308 1.59 0.00 0.00 2.78
258 265 9.909644 GTGTACTTCTAATCTGACAGTTTCTTA 57.090 33.333 1.59 0.00 0.00 2.10
339 348 3.118075 TGCAGAAACCGAATATGGGATGA 60.118 43.478 0.28 0.00 0.00 2.92
352 362 4.996788 ATGGGATGACTTTGAAGCAATC 57.003 40.909 0.00 0.00 0.00 2.67
355 365 4.943705 TGGGATGACTTTGAAGCAATCTAC 59.056 41.667 0.00 2.76 0.00 2.59
363 373 7.661437 TGACTTTGAAGCAATCTACACAACTAT 59.339 33.333 0.00 0.00 0.00 2.12
391 401 2.105006 AAGAACTGCATGCTCGTGAT 57.895 45.000 20.33 5.78 0.00 3.06
411 423 6.019881 CGTGATTACACATGAATATGACGTGT 60.020 38.462 0.00 0.00 46.20 4.49
412 424 7.464045 CGTGATTACACATGAATATGACGTGTT 60.464 37.037 0.00 0.00 46.20 3.32
413 425 7.635973 GTGATTACACATGAATATGACGTGTTG 59.364 37.037 0.00 5.31 45.32 3.33
414 426 7.547370 TGATTACACATGAATATGACGTGTTGA 59.453 33.333 0.00 0.00 37.73 3.18
415 427 5.530519 ACACATGAATATGACGTGTTGAC 57.469 39.130 0.00 0.00 37.73 3.18
416 428 5.237815 ACACATGAATATGACGTGTTGACT 58.762 37.500 0.00 0.00 37.73 3.41
417 429 5.700832 ACACATGAATATGACGTGTTGACTT 59.299 36.000 0.00 0.00 37.73 3.01
418 430 6.017325 CACATGAATATGACGTGTTGACTTG 58.983 40.000 0.00 0.00 37.73 3.16
425 437 3.804036 TGACGTGTTGACTTGGATCTTT 58.196 40.909 0.00 0.00 0.00 2.52
459 471 9.667107 TCCTGTCTCAGAAAATATATCGTTTTT 57.333 29.630 0.00 0.00 32.44 1.94
527 541 3.282831 GCTTACGAGCCAAAACACATT 57.717 42.857 0.00 0.00 43.29 2.71
547 561 9.330063 ACACATTATGTTTGATGAATAGATCGT 57.670 29.630 0.00 0.00 38.98 3.73
609 633 2.101415 ACAAGGAAGCTGAACCAAAAGC 59.899 45.455 7.44 0.00 39.82 3.51
637 664 0.606604 ACCAAACCGCGTCTACTGAT 59.393 50.000 4.92 0.00 0.00 2.90
691 736 7.607250 AGTCAACCGATCATAGAAATATCTCC 58.393 38.462 0.00 0.00 37.10 3.71
694 742 8.651389 TCAACCGATCATAGAAATATCTCCTTT 58.349 33.333 0.00 0.00 37.10 3.11
713 761 6.340522 TCCTTTCTTCTTTCCTTTTGCTTTG 58.659 36.000 0.00 0.00 0.00 2.77
718 766 3.520569 TCTTTCCTTTTGCTTTGCACAC 58.479 40.909 0.00 0.00 38.71 3.82
719 767 3.056250 TCTTTCCTTTTGCTTTGCACACA 60.056 39.130 0.00 0.00 38.71 3.72
722 770 3.976169 TCCTTTTGCTTTGCACACATAC 58.024 40.909 0.00 0.00 38.71 2.39
778 826 8.412456 TCTATTCATCTCAGATCTGAAGTTCAC 58.588 37.037 25.09 0.00 39.39 3.18
806 856 1.738099 CGGTGTTCTCTTCCCAGCG 60.738 63.158 0.00 0.00 42.54 5.18
814 864 1.306141 TCTTCCCAGCGTGGATCCT 60.306 57.895 14.23 0.00 40.96 3.24
815 865 0.032515 TCTTCCCAGCGTGGATCCTA 60.033 55.000 14.23 0.00 40.96 2.94
816 866 0.830648 CTTCCCAGCGTGGATCCTAA 59.169 55.000 14.23 0.00 40.96 2.69
821 871 0.861837 CAGCGTGGATCCTAAATCGC 59.138 55.000 14.23 18.80 43.16 4.58
822 872 0.597637 AGCGTGGATCCTAAATCGCG 60.598 55.000 14.23 0.00 46.47 5.87
823 873 1.557443 GCGTGGATCCTAAATCGCGG 61.557 60.000 14.23 0.00 34.88 6.46
824 874 0.031585 CGTGGATCCTAAATCGCGGA 59.968 55.000 14.23 0.00 0.00 5.54
825 875 1.499049 GTGGATCCTAAATCGCGGAC 58.501 55.000 14.23 0.00 30.90 4.79
826 876 0.031585 TGGATCCTAAATCGCGGACG 59.968 55.000 14.23 0.00 42.01 4.79
827 877 1.282930 GGATCCTAAATCGCGGACGC 61.283 60.000 6.13 6.63 39.84 5.19
828 878 1.282930 GATCCTAAATCGCGGACGCC 61.283 60.000 6.13 0.00 39.84 5.68
876 926 0.657840 GTGCACTTGACGAACTGCTT 59.342 50.000 10.32 0.00 0.00 3.91
884 934 6.466097 GCACTTGACGAACTGCTTAATTATTC 59.534 38.462 0.00 0.00 0.00 1.75
906 956 2.616256 CCAGATACAGCTTCCTTGTGCA 60.616 50.000 0.00 0.00 0.00 4.57
908 958 3.311871 CAGATACAGCTTCCTTGTGCATC 59.688 47.826 0.00 0.00 0.00 3.91
913 963 2.681848 CAGCTTCCTTGTGCATCCTTAG 59.318 50.000 0.00 0.00 0.00 2.18
920 972 4.962362 TCCTTGTGCATCCTTAGTCTGATA 59.038 41.667 0.00 0.00 0.00 2.15
926 978 7.112122 TGTGCATCCTTAGTCTGATATTGTTT 58.888 34.615 0.00 0.00 0.00 2.83
954 1007 8.309163 CAACTTCCTTGCTTTTATAATTGCAA 57.691 30.769 18.36 18.36 42.16 4.08
1061 1114 5.163602 ACGAGCTACCATTAGACTTCTTGAG 60.164 44.000 0.00 0.00 0.00 3.02
1074 1127 7.047460 AGACTTCTTGAGCAAAATCACAAAT 57.953 32.000 0.00 0.00 0.00 2.32
1085 1138 5.572896 GCAAAATCACAAATAACTTCTCCGG 59.427 40.000 0.00 0.00 0.00 5.14
1161 1214 6.481644 TGTATGATTTTGCCACAACTTTTTCC 59.518 34.615 0.00 0.00 0.00 3.13
1266 1322 0.532640 TTGCTGTGAAGAAGCTCGCA 60.533 50.000 0.00 0.00 41.42 5.10
1494 1550 9.778993 CACAAGAATCTTTTTGGTATGTCATAG 57.221 33.333 0.00 0.00 0.00 2.23
1495 1551 8.960591 ACAAGAATCTTTTTGGTATGTCATAGG 58.039 33.333 0.00 0.00 0.00 2.57
1496 1552 9.177608 CAAGAATCTTTTTGGTATGTCATAGGA 57.822 33.333 0.00 0.00 0.00 2.94
1498 1554 8.552296 AGAATCTTTTTGGTATGTCATAGGAGT 58.448 33.333 0.00 0.00 0.00 3.85
1502 1558 8.988060 TCTTTTTGGTATGTCATAGGAGTATCA 58.012 33.333 0.00 0.00 36.25 2.15
1513 1569 8.957466 TGTCATAGGAGTATCATTTACTATCCG 58.043 37.037 0.00 0.00 36.25 4.18
1514 1570 8.407064 GTCATAGGAGTATCATTTACTATCCGG 58.593 40.741 0.00 0.00 36.25 5.14
1519 1575 6.183360 GGAGTATCATTTACTATCCGGGCTAG 60.183 46.154 0.00 6.00 36.25 3.42
1594 1660 3.506067 CCTCTTTTTCCGCACCAGTAATT 59.494 43.478 0.00 0.00 0.00 1.40
1651 1764 7.298122 TGAATAGAAGAATCGTGCTGTTTTTC 58.702 34.615 0.00 0.00 0.00 2.29
1685 1798 4.836125 TTCACTTCACAAGATCTTTGCC 57.164 40.909 4.86 0.00 0.00 4.52
1708 1822 8.773645 TGCCGTTGTTATTATTCTGAGATATTG 58.226 33.333 0.00 0.00 0.00 1.90
1886 2003 5.460637 TCCATTTGGGTCTGAAGCCTCAG 62.461 52.174 5.94 5.94 43.82 3.35
2013 2130 5.175856 GGATCGATGTAAGTTACTGCATGTC 59.824 44.000 14.00 5.72 0.00 3.06
2058 2175 9.197694 GCTATCTTGTTCCTATACTGTAATGTG 57.802 37.037 0.00 0.00 0.00 3.21
2086 2203 9.865321 AACTCATTTTCACATCTCCAATTAATG 57.135 29.630 0.00 0.00 0.00 1.90
2097 2214 9.011095 ACATCTCCAATTAATGATGCTGATTAG 57.989 33.333 11.49 0.00 39.68 1.73
2402 2543 6.573664 TTGGACACTGGAGAAAATAATGTG 57.426 37.500 0.00 0.00 0.00 3.21
2654 2802 5.648092 AGTTTTCGTAGGCTGAGCATTTAAT 59.352 36.000 6.82 0.00 0.00 1.40
2721 2869 7.039644 AGGTACAACTAGATCGATAGGAAATGG 60.040 40.741 0.00 0.00 0.00 3.16
2749 3441 8.434661 CCACTTGCATTCATGTTTGTATTTAAC 58.565 33.333 0.00 0.00 0.00 2.01
2949 3646 6.758593 TTATATTTCGACCGATGCTAACAC 57.241 37.500 0.00 0.00 0.00 3.32
2974 3671 4.043310 TGTCATCAAATTTCAGGTCTCCCT 59.957 41.667 0.00 0.00 44.02 4.20
2994 3691 0.730265 GTCCACGTGAGCACAAAACA 59.270 50.000 19.30 0.00 0.00 2.83
3042 3749 7.017645 CCGAACATCAAGTAAAACAAGATCAG 58.982 38.462 0.00 0.00 0.00 2.90
3071 3778 6.225318 ACAAAAGTGGATGATGAAACCAATG 58.775 36.000 0.00 0.00 35.40 2.82
3211 3924 4.938226 CCTCTGGAGATTTCTGTACCAAAC 59.062 45.833 0.00 0.00 0.00 2.93
3212 3925 5.513094 CCTCTGGAGATTTCTGTACCAAACA 60.513 44.000 0.00 0.00 36.42 2.83
3213 3926 6.126863 TCTGGAGATTTCTGTACCAAACAT 57.873 37.500 0.00 0.00 37.50 2.71
3214 3927 6.173339 TCTGGAGATTTCTGTACCAAACATC 58.827 40.000 0.00 0.00 37.50 3.06
3215 3928 5.253330 TGGAGATTTCTGTACCAAACATCC 58.747 41.667 10.22 10.22 37.50 3.51
3216 3929 5.014123 TGGAGATTTCTGTACCAAACATCCT 59.986 40.000 14.61 0.00 37.50 3.24
3217 3930 5.946377 GGAGATTTCTGTACCAAACATCCTT 59.054 40.000 10.02 0.00 37.50 3.36
3218 3931 6.434340 GGAGATTTCTGTACCAAACATCCTTT 59.566 38.462 10.02 0.00 37.50 3.11
3219 3932 7.039714 GGAGATTTCTGTACCAAACATCCTTTT 60.040 37.037 10.02 0.00 37.50 2.27
3220 3933 8.250143 AGATTTCTGTACCAAACATCCTTTTT 57.750 30.769 0.00 0.00 37.50 1.94
3272 3985 6.006449 AGTTATGCCTTTTCATGTCAGTTCT 58.994 36.000 0.00 0.00 0.00 3.01
3273 3986 7.119699 CAGTTATGCCTTTTCATGTCAGTTCTA 59.880 37.037 0.00 0.00 0.00 2.10
3274 3987 7.665559 AGTTATGCCTTTTCATGTCAGTTCTAA 59.334 33.333 0.00 0.00 0.00 2.10
3275 3988 6.899393 ATGCCTTTTCATGTCAGTTCTAAA 57.101 33.333 0.00 0.00 0.00 1.85
3276 3989 6.899393 TGCCTTTTCATGTCAGTTCTAAAT 57.101 33.333 0.00 0.00 0.00 1.40
3277 3990 7.994425 TGCCTTTTCATGTCAGTTCTAAATA 57.006 32.000 0.00 0.00 0.00 1.40
3278 3991 8.579850 TGCCTTTTCATGTCAGTTCTAAATAT 57.420 30.769 0.00 0.00 0.00 1.28
3279 3992 9.023962 TGCCTTTTCATGTCAGTTCTAAATATT 57.976 29.630 0.00 0.00 0.00 1.28
3280 3993 9.860898 GCCTTTTCATGTCAGTTCTAAATATTT 57.139 29.630 5.89 5.89 0.00 1.40
3333 4046 9.001542 AGATGTCTACACTATCTATACGTTTCC 57.998 37.037 0.00 0.00 29.82 3.13
3334 4047 8.687292 ATGTCTACACTATCTATACGTTTCCA 57.313 34.615 0.00 0.00 0.00 3.53
3335 4048 8.687292 TGTCTACACTATCTATACGTTTCCAT 57.313 34.615 0.00 0.00 0.00 3.41
3336 4049 8.781196 TGTCTACACTATCTATACGTTTCCATC 58.219 37.037 0.00 0.00 0.00 3.51
3337 4050 9.001542 GTCTACACTATCTATACGTTTCCATCT 57.998 37.037 0.00 0.00 0.00 2.90
3338 4051 9.217278 TCTACACTATCTATACGTTTCCATCTC 57.783 37.037 0.00 0.00 0.00 2.75
3339 4052 7.216973 ACACTATCTATACGTTTCCATCTCC 57.783 40.000 0.00 0.00 0.00 3.71
3340 4053 7.005296 ACACTATCTATACGTTTCCATCTCCT 58.995 38.462 0.00 0.00 0.00 3.69
3341 4054 7.175293 ACACTATCTATACGTTTCCATCTCCTC 59.825 40.741 0.00 0.00 0.00 3.71
3342 4055 7.392113 CACTATCTATACGTTTCCATCTCCTCT 59.608 40.741 0.00 0.00 0.00 3.69
3343 4056 6.827586 ATCTATACGTTTCCATCTCCTCTC 57.172 41.667 0.00 0.00 0.00 3.20
3344 4057 5.691896 TCTATACGTTTCCATCTCCTCTCA 58.308 41.667 0.00 0.00 0.00 3.27
3345 4058 6.307776 TCTATACGTTTCCATCTCCTCTCAT 58.692 40.000 0.00 0.00 0.00 2.90
3346 4059 5.878406 ATACGTTTCCATCTCCTCTCATT 57.122 39.130 0.00 0.00 0.00 2.57
3347 4060 4.130286 ACGTTTCCATCTCCTCTCATTC 57.870 45.455 0.00 0.00 0.00 2.67
3348 4061 3.118592 ACGTTTCCATCTCCTCTCATTCC 60.119 47.826 0.00 0.00 0.00 3.01
3349 4062 3.462021 GTTTCCATCTCCTCTCATTCCG 58.538 50.000 0.00 0.00 0.00 4.30
3350 4063 1.043816 TCCATCTCCTCTCATTCCGC 58.956 55.000 0.00 0.00 0.00 5.54
3351 4064 0.034616 CCATCTCCTCTCATTCCGCC 59.965 60.000 0.00 0.00 0.00 6.13
3352 4065 0.755079 CATCTCCTCTCATTCCGCCA 59.245 55.000 0.00 0.00 0.00 5.69
3353 4066 1.347050 CATCTCCTCTCATTCCGCCAT 59.653 52.381 0.00 0.00 0.00 4.40
3354 4067 1.500474 TCTCCTCTCATTCCGCCATT 58.500 50.000 0.00 0.00 0.00 3.16
3355 4068 1.139654 TCTCCTCTCATTCCGCCATTG 59.860 52.381 0.00 0.00 0.00 2.82
3356 4069 0.911769 TCCTCTCATTCCGCCATTGT 59.088 50.000 0.00 0.00 0.00 2.71
3357 4070 1.281867 TCCTCTCATTCCGCCATTGTT 59.718 47.619 0.00 0.00 0.00 2.83
3358 4071 2.094675 CCTCTCATTCCGCCATTGTTT 58.905 47.619 0.00 0.00 0.00 2.83
3359 4072 2.493278 CCTCTCATTCCGCCATTGTTTT 59.507 45.455 0.00 0.00 0.00 2.43
3360 4073 3.056607 CCTCTCATTCCGCCATTGTTTTT 60.057 43.478 0.00 0.00 0.00 1.94
3361 4074 3.911868 TCTCATTCCGCCATTGTTTTTG 58.088 40.909 0.00 0.00 0.00 2.44
3362 4075 2.411904 TCATTCCGCCATTGTTTTTGC 58.588 42.857 0.00 0.00 0.00 3.68
3363 4076 1.464219 CATTCCGCCATTGTTTTTGCC 59.536 47.619 0.00 0.00 0.00 4.52
3364 4077 0.250081 TTCCGCCATTGTTTTTGCCC 60.250 50.000 0.00 0.00 0.00 5.36
3365 4078 1.670730 CCGCCATTGTTTTTGCCCC 60.671 57.895 0.00 0.00 0.00 5.80
3366 4079 1.670730 CGCCATTGTTTTTGCCCCC 60.671 57.895 0.00 0.00 0.00 5.40
3405 4118 4.838152 GCGCGCAAGAGATGGGGA 62.838 66.667 29.10 0.00 42.02 4.81
3406 4119 2.109799 CGCGCAAGAGATGGGGAT 59.890 61.111 8.75 0.00 42.02 3.85
3407 4120 2.249535 CGCGCAAGAGATGGGGATG 61.250 63.158 8.75 0.00 42.02 3.51
3408 4121 1.146930 GCGCAAGAGATGGGGATGA 59.853 57.895 0.30 0.00 42.02 2.92
3409 4122 1.162800 GCGCAAGAGATGGGGATGAC 61.163 60.000 0.30 0.00 42.02 3.06
3410 4123 0.178767 CGCAAGAGATGGGGATGACA 59.821 55.000 0.00 0.00 38.28 3.58
3411 4124 1.202734 CGCAAGAGATGGGGATGACAT 60.203 52.381 0.00 0.00 38.28 3.06
3412 4125 2.037641 CGCAAGAGATGGGGATGACATA 59.962 50.000 0.00 0.00 38.28 2.29
3413 4126 3.672808 GCAAGAGATGGGGATGACATAG 58.327 50.000 0.00 0.00 0.00 2.23
3414 4127 3.326006 GCAAGAGATGGGGATGACATAGA 59.674 47.826 0.00 0.00 0.00 1.98
3415 4128 4.202398 GCAAGAGATGGGGATGACATAGAA 60.202 45.833 0.00 0.00 0.00 2.10
3416 4129 5.549347 CAAGAGATGGGGATGACATAGAAG 58.451 45.833 0.00 0.00 0.00 2.85
3417 4130 3.582208 AGAGATGGGGATGACATAGAAGC 59.418 47.826 0.00 0.00 0.00 3.86
3424 4137 3.643792 GGGATGACATAGAAGCAGTAGGT 59.356 47.826 0.00 0.00 0.00 3.08
3461 4174 9.669353 CTAATGGTATATCAAACACTTCATTGC 57.331 33.333 0.00 0.00 0.00 3.56
3500 4259 7.502060 TGATTTTCTCTTCTACCTTCATCCT 57.498 36.000 0.00 0.00 0.00 3.24
3532 4291 2.328589 CCCTCCTCCTCTCCTCCCA 61.329 68.421 0.00 0.00 0.00 4.37
3611 4379 4.619973 CAACACAAGTTACCATGCAATGT 58.380 39.130 0.00 0.00 38.38 2.71
3648 4418 5.892160 ATGCTATGCAAATGCTACATAGG 57.108 39.130 6.97 0.00 43.62 2.57
3663 4433 4.989279 ACATAGGTGGAAATTGTCATGC 57.011 40.909 0.00 0.00 0.00 4.06
3664 4434 3.701040 ACATAGGTGGAAATTGTCATGCC 59.299 43.478 0.00 0.00 0.00 4.40
3665 4435 2.307496 AGGTGGAAATTGTCATGCCA 57.693 45.000 0.00 0.00 0.00 4.92
3666 4436 2.823959 AGGTGGAAATTGTCATGCCAT 58.176 42.857 0.00 0.00 0.00 4.40
3667 4437 2.762327 AGGTGGAAATTGTCATGCCATC 59.238 45.455 0.00 0.00 0.00 3.51
3683 4453 0.523968 CATCCGCAGACAAAATGCCG 60.524 55.000 0.00 0.00 40.67 5.69
3717 4487 7.777095 ACATAAAAGGCACTAAAAAGTTGTCA 58.223 30.769 0.00 0.00 38.49 3.58
3719 4489 4.918810 AAGGCACTAAAAAGTTGTCAGG 57.081 40.909 0.00 0.00 38.49 3.86
3747 4517 6.435277 AGTTTCAATGAAGTTGATAGGCACAT 59.565 34.615 0.00 0.00 45.77 3.21
3748 4518 7.611467 AGTTTCAATGAAGTTGATAGGCACATA 59.389 33.333 0.00 0.00 45.77 2.29
3749 4519 8.408601 GTTTCAATGAAGTTGATAGGCACATAT 58.591 33.333 0.00 0.00 45.77 1.78
3750 4520 9.625747 TTTCAATGAAGTTGATAGGCACATATA 57.374 29.630 0.00 0.00 45.77 0.86
3751 4521 8.607441 TCAATGAAGTTGATAGGCACATATAC 57.393 34.615 0.00 0.00 41.79 1.47
3752 4522 8.210265 TCAATGAAGTTGATAGGCACATATACA 58.790 33.333 0.00 0.00 41.79 2.29
3753 4523 8.839343 CAATGAAGTTGATAGGCACATATACAA 58.161 33.333 0.00 0.00 40.37 2.41
3754 4524 9.578576 AATGAAGTTGATAGGCACATATACAAT 57.421 29.630 0.00 0.00 0.00 2.71
3755 4525 8.382030 TGAAGTTGATAGGCACATATACAATG 57.618 34.615 0.00 0.00 0.00 2.82
3756 4526 6.808008 AGTTGATAGGCACATATACAATGC 57.192 37.500 0.00 0.00 38.68 3.56
3757 4527 5.409520 AGTTGATAGGCACATATACAATGCG 59.590 40.000 0.00 0.00 40.37 4.73
3758 4528 5.146010 TGATAGGCACATATACAATGCGA 57.854 39.130 0.00 0.00 40.37 5.10
3759 4529 5.733676 TGATAGGCACATATACAATGCGAT 58.266 37.500 0.00 0.00 40.37 4.58
3760 4530 6.172630 TGATAGGCACATATACAATGCGATT 58.827 36.000 0.00 0.00 40.37 3.34
3761 4531 6.654582 TGATAGGCACATATACAATGCGATTT 59.345 34.615 0.00 0.00 40.37 2.17
3762 4532 5.772825 AGGCACATATACAATGCGATTTT 57.227 34.783 0.00 0.00 40.37 1.82
3763 4533 5.762045 AGGCACATATACAATGCGATTTTC 58.238 37.500 0.00 0.00 40.37 2.29
3764 4534 5.532406 AGGCACATATACAATGCGATTTTCT 59.468 36.000 0.00 0.00 40.37 2.52
3765 4535 6.039717 AGGCACATATACAATGCGATTTTCTT 59.960 34.615 0.00 0.00 40.37 2.52
3766 4536 6.697019 GGCACATATACAATGCGATTTTCTTT 59.303 34.615 0.00 0.00 40.37 2.52
3767 4537 7.096477 GGCACATATACAATGCGATTTTCTTTC 60.096 37.037 0.00 0.00 40.37 2.62
3768 4538 7.645340 GCACATATACAATGCGATTTTCTTTCT 59.355 33.333 0.00 0.00 0.00 2.52
3769 4539 9.162793 CACATATACAATGCGATTTTCTTTCTC 57.837 33.333 0.00 0.00 0.00 2.87
3770 4540 8.892723 ACATATACAATGCGATTTTCTTTCTCA 58.107 29.630 0.00 0.00 0.00 3.27
3771 4541 9.720667 CATATACAATGCGATTTTCTTTCTCAA 57.279 29.630 0.00 0.00 0.00 3.02
3773 4543 6.753897 ACAATGCGATTTTCTTTCTCAAAC 57.246 33.333 0.00 0.00 0.00 2.93
3774 4544 6.272318 ACAATGCGATTTTCTTTCTCAAACA 58.728 32.000 0.00 0.00 0.00 2.83
3775 4545 6.198966 ACAATGCGATTTTCTTTCTCAAACAC 59.801 34.615 0.00 0.00 0.00 3.32
3776 4546 4.278858 TGCGATTTTCTTTCTCAAACACG 58.721 39.130 0.00 0.00 0.00 4.49
3777 4547 3.117994 GCGATTTTCTTTCTCAAACACGC 59.882 43.478 0.00 0.00 35.51 5.34
3778 4548 4.278858 CGATTTTCTTTCTCAAACACGCA 58.721 39.130 0.00 0.00 0.00 5.24
3779 4549 4.376861 CGATTTTCTTTCTCAAACACGCAG 59.623 41.667 0.00 0.00 0.00 5.18
3780 4550 3.691049 TTTCTTTCTCAAACACGCAGG 57.309 42.857 0.00 0.00 0.00 4.85
3781 4551 2.613026 TCTTTCTCAAACACGCAGGA 57.387 45.000 0.00 0.00 0.00 3.86
3782 4552 2.483876 TCTTTCTCAAACACGCAGGAG 58.516 47.619 0.00 0.00 0.00 3.69
3783 4553 2.102420 TCTTTCTCAAACACGCAGGAGA 59.898 45.455 0.00 0.00 34.77 3.71
3784 4554 2.839486 TTCTCAAACACGCAGGAGAT 57.161 45.000 0.00 0.00 36.39 2.75
3785 4555 3.953712 TTCTCAAACACGCAGGAGATA 57.046 42.857 0.00 0.00 36.39 1.98
3786 4556 4.471904 TTCTCAAACACGCAGGAGATAT 57.528 40.909 0.00 0.00 36.39 1.63
3787 4557 3.785486 TCTCAAACACGCAGGAGATATG 58.215 45.455 0.00 0.00 31.82 1.78
3788 4558 3.195610 TCTCAAACACGCAGGAGATATGT 59.804 43.478 0.00 0.00 31.82 2.29
3789 4559 3.261580 TCAAACACGCAGGAGATATGTG 58.738 45.455 0.00 0.00 36.64 3.21
3790 4560 3.002791 CAAACACGCAGGAGATATGTGT 58.997 45.455 0.00 0.00 45.01 3.72
3791 4561 4.081917 TCAAACACGCAGGAGATATGTGTA 60.082 41.667 0.00 0.00 42.50 2.90
3792 4562 4.672587 AACACGCAGGAGATATGTGTAT 57.327 40.909 0.00 0.00 42.50 2.29
3793 4563 4.244425 ACACGCAGGAGATATGTGTATC 57.756 45.455 0.00 0.00 41.61 2.24
3794 4564 3.636764 ACACGCAGGAGATATGTGTATCA 59.363 43.478 0.00 0.00 41.61 2.15
3795 4565 4.281941 ACACGCAGGAGATATGTGTATCAT 59.718 41.667 0.00 0.00 41.61 2.45
3796 4566 4.861462 CACGCAGGAGATATGTGTATCATC 59.139 45.833 0.00 0.00 39.28 2.92
3797 4567 4.524328 ACGCAGGAGATATGTGTATCATCA 59.476 41.667 0.00 0.00 39.51 3.07
3798 4568 5.011023 ACGCAGGAGATATGTGTATCATCAA 59.989 40.000 0.00 0.00 39.51 2.57
3799 4569 5.928264 CGCAGGAGATATGTGTATCATCAAA 59.072 40.000 0.00 0.00 39.36 2.69
3800 4570 6.592994 CGCAGGAGATATGTGTATCATCAAAT 59.407 38.462 0.00 0.00 39.36 2.32
3801 4571 7.118825 CGCAGGAGATATGTGTATCATCAAATT 59.881 37.037 0.00 0.00 39.36 1.82
3802 4572 9.440773 GCAGGAGATATGTGTATCATCAAATTA 57.559 33.333 0.00 0.00 39.36 1.40
3833 4603 4.649267 TGGAACAAGAATCCATACACCA 57.351 40.909 0.00 0.00 41.98 4.17
3834 4604 5.191727 TGGAACAAGAATCCATACACCAT 57.808 39.130 0.00 0.00 41.98 3.55
3835 4605 5.192927 TGGAACAAGAATCCATACACCATC 58.807 41.667 0.00 0.00 41.98 3.51
3836 4606 4.580580 GGAACAAGAATCCATACACCATCC 59.419 45.833 0.00 0.00 36.92 3.51
3837 4607 4.860802 ACAAGAATCCATACACCATCCA 57.139 40.909 0.00 0.00 0.00 3.41
3838 4608 4.526970 ACAAGAATCCATACACCATCCAC 58.473 43.478 0.00 0.00 0.00 4.02
3839 4609 4.228210 ACAAGAATCCATACACCATCCACT 59.772 41.667 0.00 0.00 0.00 4.00
3840 4610 4.696479 AGAATCCATACACCATCCACTC 57.304 45.455 0.00 0.00 0.00 3.51
3841 4611 4.040047 AGAATCCATACACCATCCACTCA 58.960 43.478 0.00 0.00 0.00 3.41
3842 4612 3.845781 ATCCATACACCATCCACTCAC 57.154 47.619 0.00 0.00 0.00 3.51
3843 4613 2.545810 TCCATACACCATCCACTCACA 58.454 47.619 0.00 0.00 0.00 3.58
3844 4614 2.236146 TCCATACACCATCCACTCACAC 59.764 50.000 0.00 0.00 0.00 3.82
3845 4615 2.027285 CCATACACCATCCACTCACACA 60.027 50.000 0.00 0.00 0.00 3.72
3846 4616 3.370846 CCATACACCATCCACTCACACAT 60.371 47.826 0.00 0.00 0.00 3.21
3847 4617 2.189594 ACACCATCCACTCACACATG 57.810 50.000 0.00 0.00 0.00 3.21
3848 4618 1.421268 ACACCATCCACTCACACATGT 59.579 47.619 0.00 0.00 0.00 3.21
3849 4619 2.158623 ACACCATCCACTCACACATGTT 60.159 45.455 0.00 0.00 0.00 2.71
3850 4620 3.072330 ACACCATCCACTCACACATGTTA 59.928 43.478 0.00 0.00 0.00 2.41
3851 4621 3.436704 CACCATCCACTCACACATGTTAC 59.563 47.826 0.00 0.00 0.00 2.50
3852 4622 2.672874 CCATCCACTCACACATGTTACG 59.327 50.000 0.00 0.00 0.00 3.18
3853 4623 1.790755 TCCACTCACACATGTTACGC 58.209 50.000 0.00 0.00 0.00 4.42
3854 4624 1.069358 TCCACTCACACATGTTACGCA 59.931 47.619 0.00 0.00 0.00 5.24
3855 4625 1.194547 CCACTCACACATGTTACGCAC 59.805 52.381 0.00 0.00 0.00 5.34
3856 4626 1.864082 CACTCACACATGTTACGCACA 59.136 47.619 0.00 0.00 40.71 4.57
3857 4627 1.864711 ACTCACACATGTTACGCACAC 59.135 47.619 0.00 0.00 38.61 3.82
3858 4628 1.194547 CTCACACATGTTACGCACACC 59.805 52.381 0.00 0.00 38.61 4.16
3859 4629 0.940833 CACACATGTTACGCACACCA 59.059 50.000 0.00 0.00 38.61 4.17
3860 4630 0.941542 ACACATGTTACGCACACCAC 59.058 50.000 0.00 0.00 38.61 4.16
3861 4631 0.110867 CACATGTTACGCACACCACG 60.111 55.000 0.00 0.00 38.61 4.94
3862 4632 1.154488 CATGTTACGCACACCACGC 60.154 57.895 0.00 0.00 38.61 5.34
3863 4633 1.301401 ATGTTACGCACACCACGCT 60.301 52.632 0.00 0.00 38.61 5.07
3864 4634 0.038067 ATGTTACGCACACCACGCTA 60.038 50.000 0.00 0.00 38.61 4.26
3865 4635 0.038067 TGTTACGCACACCACGCTAT 60.038 50.000 0.00 0.00 0.00 2.97
3866 4636 1.073177 GTTACGCACACCACGCTATT 58.927 50.000 0.00 0.00 0.00 1.73
3867 4637 1.072391 TTACGCACACCACGCTATTG 58.928 50.000 0.00 0.00 0.00 1.90
3868 4638 0.038067 TACGCACACCACGCTATTGT 60.038 50.000 0.00 0.00 0.00 2.71
3869 4639 0.882927 ACGCACACCACGCTATTGTT 60.883 50.000 0.00 0.00 0.00 2.83
3870 4640 0.179225 CGCACACCACGCTATTGTTC 60.179 55.000 0.00 0.00 0.00 3.18
3871 4641 1.156736 GCACACCACGCTATTGTTCT 58.843 50.000 0.00 0.00 0.00 3.01
3872 4642 1.128692 GCACACCACGCTATTGTTCTC 59.871 52.381 0.00 0.00 0.00 2.87
3873 4643 2.412870 CACACCACGCTATTGTTCTCA 58.587 47.619 0.00 0.00 0.00 3.27
3874 4644 2.413112 CACACCACGCTATTGTTCTCAG 59.587 50.000 0.00 0.00 0.00 3.35
3875 4645 2.299013 ACACCACGCTATTGTTCTCAGA 59.701 45.455 0.00 0.00 0.00 3.27
3876 4646 3.055819 ACACCACGCTATTGTTCTCAGAT 60.056 43.478 0.00 0.00 0.00 2.90
3877 4647 3.935203 CACCACGCTATTGTTCTCAGATT 59.065 43.478 0.00 0.00 0.00 2.40
3878 4648 3.935203 ACCACGCTATTGTTCTCAGATTG 59.065 43.478 0.00 0.00 0.00 2.67
3879 4649 3.242543 CCACGCTATTGTTCTCAGATTGC 60.243 47.826 0.00 0.00 0.00 3.56
3880 4650 3.371898 CACGCTATTGTTCTCAGATTGCA 59.628 43.478 0.00 0.00 0.00 4.08
3881 4651 4.034858 CACGCTATTGTTCTCAGATTGCAT 59.965 41.667 0.00 0.00 0.00 3.96
3882 4652 4.272018 ACGCTATTGTTCTCAGATTGCATC 59.728 41.667 0.00 0.00 0.00 3.91
3883 4653 4.510711 CGCTATTGTTCTCAGATTGCATCT 59.489 41.667 0.00 0.00 41.15 2.90
3925 4695 8.897872 AAAAAGATTGTTAGAAAGGACTACGA 57.102 30.769 0.00 0.00 0.00 3.43
3926 4696 7.886405 AAAGATTGTTAGAAAGGACTACGAC 57.114 36.000 0.00 0.00 0.00 4.34
3927 4697 5.963594 AGATTGTTAGAAAGGACTACGACC 58.036 41.667 0.00 0.00 0.00 4.79
3928 4698 5.479375 AGATTGTTAGAAAGGACTACGACCA 59.521 40.000 0.00 0.00 0.00 4.02
3929 4699 5.534207 TTGTTAGAAAGGACTACGACCAA 57.466 39.130 0.00 0.00 0.00 3.67
3930 4700 5.534207 TGTTAGAAAGGACTACGACCAAA 57.466 39.130 0.00 0.00 0.00 3.28
3931 4701 5.291971 TGTTAGAAAGGACTACGACCAAAC 58.708 41.667 0.00 0.00 0.00 2.93
3932 4702 5.163426 TGTTAGAAAGGACTACGACCAAACA 60.163 40.000 0.00 0.00 0.00 2.83
3933 4703 4.411256 AGAAAGGACTACGACCAAACAA 57.589 40.909 0.00 0.00 0.00 2.83
3934 4704 4.124970 AGAAAGGACTACGACCAAACAAC 58.875 43.478 0.00 0.00 0.00 3.32
3935 4705 3.832615 AAGGACTACGACCAAACAACT 57.167 42.857 0.00 0.00 0.00 3.16
3936 4706 4.942761 AAGGACTACGACCAAACAACTA 57.057 40.909 0.00 0.00 0.00 2.24
3937 4707 4.942761 AGGACTACGACCAAACAACTAA 57.057 40.909 0.00 0.00 0.00 2.24
3938 4708 4.879598 AGGACTACGACCAAACAACTAAG 58.120 43.478 0.00 0.00 0.00 2.18
3939 4709 3.431233 GGACTACGACCAAACAACTAAGC 59.569 47.826 0.00 0.00 0.00 3.09
3940 4710 4.304939 GACTACGACCAAACAACTAAGCT 58.695 43.478 0.00 0.00 0.00 3.74
3941 4711 4.304939 ACTACGACCAAACAACTAAGCTC 58.695 43.478 0.00 0.00 0.00 4.09
3942 4712 2.490991 ACGACCAAACAACTAAGCTCC 58.509 47.619 0.00 0.00 0.00 4.70
3943 4713 2.158871 ACGACCAAACAACTAAGCTCCA 60.159 45.455 0.00 0.00 0.00 3.86
3944 4714 2.875933 CGACCAAACAACTAAGCTCCAA 59.124 45.455 0.00 0.00 0.00 3.53
3945 4715 3.058914 CGACCAAACAACTAAGCTCCAAG 60.059 47.826 0.00 0.00 0.00 3.61
3946 4716 3.222603 ACCAAACAACTAAGCTCCAAGG 58.777 45.455 0.00 0.00 0.00 3.61
3947 4717 2.558359 CCAAACAACTAAGCTCCAAGGG 59.442 50.000 0.00 0.00 0.00 3.95
3948 4718 1.911057 AACAACTAAGCTCCAAGGGC 58.089 50.000 0.00 0.00 0.00 5.19
3949 4719 0.038310 ACAACTAAGCTCCAAGGGCC 59.962 55.000 0.00 0.00 0.00 5.80
3950 4720 1.026718 CAACTAAGCTCCAAGGGCCG 61.027 60.000 0.00 0.00 0.00 6.13
3951 4721 2.190578 CTAAGCTCCAAGGGCCGG 59.809 66.667 0.00 0.00 0.00 6.13
3952 4722 3.406595 CTAAGCTCCAAGGGCCGGG 62.407 68.421 2.18 10.67 0.00 5.73
3963 4733 4.344865 GGCCGGGGCAGTCAAGAA 62.345 66.667 16.76 0.00 44.11 2.52
3964 4734 2.282180 GCCGGGGCAGTCAAGAAA 60.282 61.111 2.18 0.00 41.49 2.52
3965 4735 2.335712 GCCGGGGCAGTCAAGAAAG 61.336 63.158 2.18 0.00 41.49 2.62
3966 4736 1.374947 CCGGGGCAGTCAAGAAAGA 59.625 57.895 0.00 0.00 0.00 2.52
3967 4737 0.674895 CCGGGGCAGTCAAGAAAGAG 60.675 60.000 0.00 0.00 0.00 2.85
3968 4738 0.321671 CGGGGCAGTCAAGAAAGAGA 59.678 55.000 0.00 0.00 0.00 3.10
3969 4739 1.674221 CGGGGCAGTCAAGAAAGAGAG 60.674 57.143 0.00 0.00 0.00 3.20
3970 4740 1.339535 GGGGCAGTCAAGAAAGAGAGG 60.340 57.143 0.00 0.00 0.00 3.69
3971 4741 1.447945 GGCAGTCAAGAAAGAGAGGC 58.552 55.000 0.00 0.00 0.00 4.70
3972 4742 1.447945 GCAGTCAAGAAAGAGAGGCC 58.552 55.000 0.00 0.00 0.00 5.19
3973 4743 1.948144 GCAGTCAAGAAAGAGAGGCCC 60.948 57.143 0.00 0.00 0.00 5.80
3974 4744 0.988063 AGTCAAGAAAGAGAGGCCCC 59.012 55.000 0.00 0.00 0.00 5.80
3975 4745 0.693049 GTCAAGAAAGAGAGGCCCCA 59.307 55.000 0.00 0.00 0.00 4.96
3976 4746 1.283321 GTCAAGAAAGAGAGGCCCCAT 59.717 52.381 0.00 0.00 0.00 4.00
3977 4747 1.283029 TCAAGAAAGAGAGGCCCCATG 59.717 52.381 0.00 0.00 0.00 3.66
3978 4748 0.033699 AAGAAAGAGAGGCCCCATGC 60.034 55.000 0.00 0.00 40.16 4.06
3979 4749 1.821332 GAAAGAGAGGCCCCATGCG 60.821 63.158 0.00 0.00 42.61 4.73
3980 4750 4.496336 AAGAGAGGCCCCATGCGC 62.496 66.667 0.00 0.00 42.61 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.550830 AATTTGACAGGTCACGCTCT 57.449 45.000 0.77 0.00 39.66 4.09
35 36 7.037153 TGGTATAGAACTGGGGAAACAAATAGT 60.037 37.037 0.00 0.00 0.00 2.12
156 159 2.438868 GGCAACAACTTCCCATGTTC 57.561 50.000 0.00 0.00 37.66 3.18
186 189 4.915704 TGTTGGAATTCTTCACGAACAAC 58.084 39.130 5.23 8.82 36.99 3.32
187 190 4.878971 TCTGTTGGAATTCTTCACGAACAA 59.121 37.500 5.23 0.00 33.72 2.83
188 191 4.447290 TCTGTTGGAATTCTTCACGAACA 58.553 39.130 5.23 0.00 33.72 3.18
224 231 5.633601 TCAGATTAGAAGTACACGCTGTTTG 59.366 40.000 0.00 0.00 0.00 2.93
339 348 7.986085 ATAGTTGTGTAGATTGCTTCAAAGT 57.014 32.000 0.00 0.00 0.00 2.66
363 373 7.169813 CACGAGCATGCAGTTCTTTATCTTATA 59.830 37.037 21.98 0.00 0.00 0.98
371 381 1.882912 TCACGAGCATGCAGTTCTTT 58.117 45.000 21.98 0.00 0.00 2.52
391 401 6.871492 AGTCAACACGTCATATTCATGTGTAA 59.129 34.615 9.04 1.10 42.08 2.41
425 437 3.576078 TTCTGAGACAGGAAGCCAAAA 57.424 42.857 0.00 0.00 31.51 2.44
459 471 1.812235 ATCAAGTGCATCACGCTGAA 58.188 45.000 0.00 0.00 43.06 3.02
557 571 8.465999 AGATAATTTCGGTCACATGCATTTTAA 58.534 29.630 0.00 0.00 0.00 1.52
609 633 1.001815 ACGCGGTTTGGTCTGATTTTG 60.002 47.619 12.47 0.00 0.00 2.44
651 678 1.248486 TGACTTGACTGTCGCTAGCT 58.752 50.000 13.93 0.00 39.64 3.32
691 736 5.581874 TGCAAAGCAAAAGGAAAGAAGAAAG 59.418 36.000 0.00 0.00 34.76 2.62
694 742 4.081752 TGTGCAAAGCAAAAGGAAAGAAGA 60.082 37.500 0.00 0.00 41.47 2.87
702 750 3.981211 AGTATGTGTGCAAAGCAAAAGG 58.019 40.909 0.00 0.00 41.47 3.11
713 761 1.066143 ACTGCCCACTAGTATGTGTGC 60.066 52.381 0.00 0.00 40.74 4.57
718 766 0.541392 TGCCACTGCCCACTAGTATG 59.459 55.000 0.00 0.00 36.33 2.39
719 767 0.541863 GTGCCACTGCCCACTAGTAT 59.458 55.000 0.00 0.00 36.33 2.12
722 770 2.045926 GGTGCCACTGCCCACTAG 60.046 66.667 0.00 0.00 36.33 2.57
742 790 7.036996 TCTGAGATGAATAGACTACTTGCTG 57.963 40.000 0.00 0.00 0.00 4.41
749 797 9.639563 AACTTCAGATCTGAGATGAATAGACTA 57.360 33.333 23.92 5.25 41.13 2.59
778 826 1.305381 AGAACACCGGGAGAGGGAG 60.305 63.158 6.32 0.00 35.02 4.30
806 856 1.499049 GTCCGCGATTTAGGATCCAC 58.501 55.000 15.82 0.00 38.97 4.02
814 864 3.824469 TCCGGCGTCCGCGATTTA 61.824 61.111 8.23 0.00 46.86 1.40
876 926 7.633018 AGGAAGCTGTATCTGGGAATAATTA 57.367 36.000 0.00 0.00 0.00 1.40
884 934 2.636830 CACAAGGAAGCTGTATCTGGG 58.363 52.381 0.00 0.00 0.00 4.45
906 956 9.331282 GTTGCTAAACAATATCAGACTAAGGAT 57.669 33.333 0.00 0.00 41.27 3.24
908 958 8.723942 AGTTGCTAAACAATATCAGACTAAGG 57.276 34.615 0.00 0.00 41.27 2.69
913 963 7.617041 AGGAAGTTGCTAAACAATATCAGAC 57.383 36.000 0.00 0.00 41.27 3.51
944 996 7.042389 TGCGATCGATTACAACTTGCAATTATA 60.042 33.333 21.57 0.00 0.00 0.98
945 997 6.136071 GCGATCGATTACAACTTGCAATTAT 58.864 36.000 21.57 0.00 0.00 1.28
1061 1114 5.572896 CCGGAGAAGTTATTTGTGATTTTGC 59.427 40.000 0.00 0.00 0.00 3.68
1074 1127 3.083122 AGTAGCTCACCGGAGAAGTTA 57.917 47.619 9.46 1.46 44.26 2.24
1085 1138 2.166664 CCCTGACCAAGTAGTAGCTCAC 59.833 54.545 0.00 0.00 0.00 3.51
1161 1214 4.025730 CCCGTATCAACATCTGAATTGACG 60.026 45.833 9.18 9.66 37.64 4.35
1266 1322 2.073816 CGTGGTACAGGCGAATTTTCT 58.926 47.619 0.00 0.00 41.80 2.52
1494 1550 4.466726 AGCCCGGATAGTAAATGATACTCC 59.533 45.833 0.73 0.00 0.00 3.85
1495 1551 5.662674 AGCCCGGATAGTAAATGATACTC 57.337 43.478 0.73 0.00 0.00 2.59
1496 1552 6.254522 ACTAGCCCGGATAGTAAATGATACT 58.745 40.000 13.84 0.00 32.75 2.12
1498 1554 8.834004 AATACTAGCCCGGATAGTAAATGATA 57.166 34.615 23.10 4.42 39.80 2.15
1501 1557 9.886132 AAATAATACTAGCCCGGATAGTAAATG 57.114 33.333 23.10 0.00 39.80 2.32
1505 1561 9.092338 TGAAAAATAATACTAGCCCGGATAGTA 57.908 33.333 21.88 21.88 40.48 1.82
1511 1567 5.240623 TGCATGAAAAATAATACTAGCCCGG 59.759 40.000 0.00 0.00 0.00 5.73
1513 1569 6.265422 AGGTGCATGAAAAATAATACTAGCCC 59.735 38.462 0.00 0.00 0.00 5.19
1514 1570 7.277174 AGGTGCATGAAAAATAATACTAGCC 57.723 36.000 0.00 0.00 0.00 3.93
1519 1575 8.442384 CCAAACAAGGTGCATGAAAAATAATAC 58.558 33.333 0.00 0.00 0.00 1.89
1594 1660 7.828717 TGTGATGATATCCTTTTTGCTCAGTAA 59.171 33.333 0.00 0.00 0.00 2.24
1651 1764 4.580167 TGTGAAGTGAAAAATCTCCACCAG 59.420 41.667 0.00 0.00 0.00 4.00
1708 1822 8.358148 TCTAAGATGGTGGATAAAGACGATAAC 58.642 37.037 0.00 0.00 0.00 1.89
1886 2003 7.438459 GTCATGTTGTCACCCAGTAGTATATTC 59.562 40.741 0.00 0.00 0.00 1.75
2058 2175 9.912634 TTAATTGGAGATGTGAAAATGAGTTTC 57.087 29.630 0.00 0.00 45.13 2.78
2097 2214 7.345192 CACTAACGGCATTAACATCAAGATAC 58.655 38.462 0.00 0.00 0.00 2.24
2402 2543 8.651588 CATGTTCTTCTAACTCAATGTACTCAC 58.348 37.037 0.00 0.00 0.00 3.51
2628 2776 3.232213 TGCTCAGCCTACGAAAACTAG 57.768 47.619 0.00 0.00 0.00 2.57
2676 2824 3.055094 ACCTAGGCACCACTGTTAATCTG 60.055 47.826 9.30 0.00 0.00 2.90
2721 2869 2.070783 CAAACATGAATGCAAGTGGGC 58.929 47.619 0.00 0.00 0.00 5.36
2924 3621 7.515528 CGTGTTAGCATCGGTCGAAATATAAAA 60.516 37.037 0.00 0.00 0.00 1.52
2949 3646 4.142816 GGAGACCTGAAATTTGATGACACG 60.143 45.833 0.00 0.00 0.00 4.49
2974 3671 0.730265 GTTTTGTGCTCACGTGGACA 59.270 50.000 17.00 13.21 36.53 4.02
2975 3672 0.730265 TGTTTTGTGCTCACGTGGAC 59.270 50.000 17.00 10.70 0.00 4.02
2980 3677 0.950836 TGGGATGTTTTGTGCTCACG 59.049 50.000 0.00 0.00 0.00 4.35
2994 3691 4.841422 CATCTCTCACTGAAAAGTGGGAT 58.159 43.478 8.80 6.52 46.80 3.85
3017 3714 6.898041 TGATCTTGTTTTACTTGATGTTCGG 58.102 36.000 0.00 0.00 0.00 4.30
3042 3749 5.627499 TTCATCATCCACTTTTGTAGCAC 57.373 39.130 0.00 0.00 0.00 4.40
3126 3837 4.759693 TGGGTCATGTTCACAATACACTTC 59.240 41.667 0.00 0.00 0.00 3.01
3217 3930 9.487790 AAAATTGTTCTCTCTTGACAACAAAAA 57.512 25.926 4.34 0.00 41.75 1.94
3218 3931 8.924691 CAAAATTGTTCTCTCTTGACAACAAAA 58.075 29.630 4.34 0.00 41.75 2.44
3219 3932 7.063308 GCAAAATTGTTCTCTCTTGACAACAAA 59.937 33.333 4.34 0.00 41.75 2.83
3220 3933 6.531240 GCAAAATTGTTCTCTCTTGACAACAA 59.469 34.615 0.00 0.00 42.30 2.83
3221 3934 6.035843 GCAAAATTGTTCTCTCTTGACAACA 58.964 36.000 0.00 0.00 31.04 3.33
3222 3935 5.172053 CGCAAAATTGTTCTCTCTTGACAAC 59.828 40.000 0.00 0.00 0.00 3.32
3223 3936 5.273170 CGCAAAATTGTTCTCTCTTGACAA 58.727 37.500 0.00 0.00 0.00 3.18
3224 3937 4.789481 GCGCAAAATTGTTCTCTCTTGACA 60.789 41.667 0.30 0.00 0.00 3.58
3225 3938 3.665871 GCGCAAAATTGTTCTCTCTTGAC 59.334 43.478 0.30 0.00 0.00 3.18
3226 3939 3.314913 TGCGCAAAATTGTTCTCTCTTGA 59.685 39.130 8.16 0.00 0.00 3.02
3227 3940 3.631144 TGCGCAAAATTGTTCTCTCTTG 58.369 40.909 8.16 0.00 0.00 3.02
3228 3941 3.316308 ACTGCGCAAAATTGTTCTCTCTT 59.684 39.130 13.05 0.00 0.00 2.85
3229 3942 2.880890 ACTGCGCAAAATTGTTCTCTCT 59.119 40.909 13.05 0.00 0.00 3.10
3230 3943 3.273919 ACTGCGCAAAATTGTTCTCTC 57.726 42.857 13.05 0.00 0.00 3.20
3231 3944 3.715628 AACTGCGCAAAATTGTTCTCT 57.284 38.095 13.05 0.00 0.00 3.10
3232 3945 4.201523 GCATAACTGCGCAAAATTGTTCTC 60.202 41.667 13.05 1.18 38.92 2.87
3233 3946 3.674753 GCATAACTGCGCAAAATTGTTCT 59.325 39.130 13.05 1.25 38.92 3.01
3234 3947 3.977536 GCATAACTGCGCAAAATTGTTC 58.022 40.909 13.05 0.00 38.92 3.18
3307 4020 9.001542 GGAAACGTATAGATAGTGTAGACATCT 57.998 37.037 0.00 9.01 33.66 2.90
3308 4021 8.781196 TGGAAACGTATAGATAGTGTAGACATC 58.219 37.037 0.00 0.00 0.00 3.06
3309 4022 8.687292 TGGAAACGTATAGATAGTGTAGACAT 57.313 34.615 0.00 0.00 0.00 3.06
3310 4023 8.687292 ATGGAAACGTATAGATAGTGTAGACA 57.313 34.615 0.00 0.00 0.00 3.41
3311 4024 9.001542 AGATGGAAACGTATAGATAGTGTAGAC 57.998 37.037 0.00 0.00 0.00 2.59
3312 4025 9.217278 GAGATGGAAACGTATAGATAGTGTAGA 57.783 37.037 0.00 0.00 0.00 2.59
3313 4026 8.452534 GGAGATGGAAACGTATAGATAGTGTAG 58.547 40.741 0.00 0.00 0.00 2.74
3314 4027 8.162085 AGGAGATGGAAACGTATAGATAGTGTA 58.838 37.037 0.00 0.00 0.00 2.90
3315 4028 7.005296 AGGAGATGGAAACGTATAGATAGTGT 58.995 38.462 0.00 0.00 0.00 3.55
3316 4029 7.392113 AGAGGAGATGGAAACGTATAGATAGTG 59.608 40.741 0.00 0.00 0.00 2.74
3317 4030 7.463431 AGAGGAGATGGAAACGTATAGATAGT 58.537 38.462 0.00 0.00 0.00 2.12
3318 4031 7.608376 TGAGAGGAGATGGAAACGTATAGATAG 59.392 40.741 0.00 0.00 0.00 2.08
3319 4032 7.459234 TGAGAGGAGATGGAAACGTATAGATA 58.541 38.462 0.00 0.00 0.00 1.98
3320 4033 6.307776 TGAGAGGAGATGGAAACGTATAGAT 58.692 40.000 0.00 0.00 0.00 1.98
3321 4034 5.691896 TGAGAGGAGATGGAAACGTATAGA 58.308 41.667 0.00 0.00 0.00 1.98
3322 4035 6.582677 ATGAGAGGAGATGGAAACGTATAG 57.417 41.667 0.00 0.00 0.00 1.31
3323 4036 6.015350 GGAATGAGAGGAGATGGAAACGTATA 60.015 42.308 0.00 0.00 0.00 1.47
3324 4037 5.221541 GGAATGAGAGGAGATGGAAACGTAT 60.222 44.000 0.00 0.00 0.00 3.06
3325 4038 4.099573 GGAATGAGAGGAGATGGAAACGTA 59.900 45.833 0.00 0.00 0.00 3.57
3326 4039 3.118592 GGAATGAGAGGAGATGGAAACGT 60.119 47.826 0.00 0.00 0.00 3.99
3327 4040 3.462021 GGAATGAGAGGAGATGGAAACG 58.538 50.000 0.00 0.00 0.00 3.60
3328 4041 3.462021 CGGAATGAGAGGAGATGGAAAC 58.538 50.000 0.00 0.00 0.00 2.78
3329 4042 2.158900 GCGGAATGAGAGGAGATGGAAA 60.159 50.000 0.00 0.00 0.00 3.13
3330 4043 1.414181 GCGGAATGAGAGGAGATGGAA 59.586 52.381 0.00 0.00 0.00 3.53
3331 4044 1.043816 GCGGAATGAGAGGAGATGGA 58.956 55.000 0.00 0.00 0.00 3.41
3332 4045 0.034616 GGCGGAATGAGAGGAGATGG 59.965 60.000 0.00 0.00 0.00 3.51
3333 4046 0.755079 TGGCGGAATGAGAGGAGATG 59.245 55.000 0.00 0.00 0.00 2.90
3334 4047 1.727062 ATGGCGGAATGAGAGGAGAT 58.273 50.000 0.00 0.00 0.00 2.75
3335 4048 1.139654 CAATGGCGGAATGAGAGGAGA 59.860 52.381 0.00 0.00 0.00 3.71
3336 4049 1.134280 ACAATGGCGGAATGAGAGGAG 60.134 52.381 0.00 0.00 0.00 3.69
3337 4050 0.911769 ACAATGGCGGAATGAGAGGA 59.088 50.000 0.00 0.00 0.00 3.71
3338 4051 1.755179 AACAATGGCGGAATGAGAGG 58.245 50.000 0.00 0.00 0.00 3.69
3339 4052 3.855689 AAAACAATGGCGGAATGAGAG 57.144 42.857 0.00 0.00 0.00 3.20
3340 4053 3.860378 GCAAAAACAATGGCGGAATGAGA 60.860 43.478 0.00 0.00 0.00 3.27
3341 4054 2.412770 GCAAAAACAATGGCGGAATGAG 59.587 45.455 0.00 0.00 0.00 2.90
3342 4055 2.411904 GCAAAAACAATGGCGGAATGA 58.588 42.857 0.00 0.00 0.00 2.57
3343 4056 1.464219 GGCAAAAACAATGGCGGAATG 59.536 47.619 0.00 0.00 33.46 2.67
3344 4057 1.610363 GGGCAAAAACAATGGCGGAAT 60.610 47.619 0.00 0.00 43.72 3.01
3345 4058 0.250081 GGGCAAAAACAATGGCGGAA 60.250 50.000 0.00 0.00 43.72 4.30
3346 4059 1.369321 GGGCAAAAACAATGGCGGA 59.631 52.632 0.00 0.00 43.72 5.54
3347 4060 1.670730 GGGGCAAAAACAATGGCGG 60.671 57.895 0.00 0.00 43.72 6.13
3348 4061 1.670730 GGGGGCAAAAACAATGGCG 60.671 57.895 0.00 0.00 43.72 5.69
3349 4062 4.395519 GGGGGCAAAAACAATGGC 57.604 55.556 0.00 0.00 42.20 4.40
3388 4101 4.838152 TCCCCATCTCTTGCGCGC 62.838 66.667 27.26 27.26 0.00 6.86
3389 4102 2.109799 ATCCCCATCTCTTGCGCG 59.890 61.111 0.00 0.00 0.00 6.86
3390 4103 1.146930 TCATCCCCATCTCTTGCGC 59.853 57.895 0.00 0.00 0.00 6.09
3391 4104 0.178767 TGTCATCCCCATCTCTTGCG 59.821 55.000 0.00 0.00 0.00 4.85
3392 4105 2.653234 ATGTCATCCCCATCTCTTGC 57.347 50.000 0.00 0.00 0.00 4.01
3393 4106 5.549347 CTTCTATGTCATCCCCATCTCTTG 58.451 45.833 0.00 0.00 0.00 3.02
3394 4107 4.041444 GCTTCTATGTCATCCCCATCTCTT 59.959 45.833 0.00 0.00 0.00 2.85
3395 4108 3.582208 GCTTCTATGTCATCCCCATCTCT 59.418 47.826 0.00 0.00 0.00 3.10
3396 4109 3.326006 TGCTTCTATGTCATCCCCATCTC 59.674 47.826 0.00 0.00 0.00 2.75
3397 4110 3.321039 TGCTTCTATGTCATCCCCATCT 58.679 45.455 0.00 0.00 0.00 2.90
3398 4111 3.072184 ACTGCTTCTATGTCATCCCCATC 59.928 47.826 0.00 0.00 0.00 3.51
3399 4112 3.051581 ACTGCTTCTATGTCATCCCCAT 58.948 45.455 0.00 0.00 0.00 4.00
3400 4113 2.481441 ACTGCTTCTATGTCATCCCCA 58.519 47.619 0.00 0.00 0.00 4.96
3401 4114 3.007398 CCTACTGCTTCTATGTCATCCCC 59.993 52.174 0.00 0.00 0.00 4.81
3402 4115 3.643792 ACCTACTGCTTCTATGTCATCCC 59.356 47.826 0.00 0.00 0.00 3.85
3403 4116 4.946478 ACCTACTGCTTCTATGTCATCC 57.054 45.455 0.00 0.00 0.00 3.51
3404 4117 7.493367 ACTAAACCTACTGCTTCTATGTCATC 58.507 38.462 0.00 0.00 0.00 2.92
3405 4118 7.425224 ACTAAACCTACTGCTTCTATGTCAT 57.575 36.000 0.00 0.00 0.00 3.06
3406 4119 6.852420 ACTAAACCTACTGCTTCTATGTCA 57.148 37.500 0.00 0.00 0.00 3.58
3407 4120 7.275999 GTCAACTAAACCTACTGCTTCTATGTC 59.724 40.741 0.00 0.00 0.00 3.06
3408 4121 7.097834 GTCAACTAAACCTACTGCTTCTATGT 58.902 38.462 0.00 0.00 0.00 2.29
3409 4122 6.535508 GGTCAACTAAACCTACTGCTTCTATG 59.464 42.308 0.00 0.00 33.78 2.23
3410 4123 6.351966 GGGTCAACTAAACCTACTGCTTCTAT 60.352 42.308 0.00 0.00 36.97 1.98
3411 4124 5.046807 GGGTCAACTAAACCTACTGCTTCTA 60.047 44.000 0.00 0.00 36.97 2.10
3412 4125 4.262938 GGGTCAACTAAACCTACTGCTTCT 60.263 45.833 0.00 0.00 36.97 2.85
3413 4126 4.001652 GGGTCAACTAAACCTACTGCTTC 58.998 47.826 0.00 0.00 36.97 3.86
3414 4127 3.651423 AGGGTCAACTAAACCTACTGCTT 59.349 43.478 0.00 0.00 36.97 3.91
3415 4128 3.248888 AGGGTCAACTAAACCTACTGCT 58.751 45.455 0.00 0.00 36.97 4.24
3416 4129 3.697619 AGGGTCAACTAAACCTACTGC 57.302 47.619 0.00 0.00 36.97 4.40
3417 4130 6.113411 CCATTAGGGTCAACTAAACCTACTG 58.887 44.000 0.00 0.00 36.60 2.74
3648 4418 2.480073 CGGATGGCATGACAATTTCCAC 60.480 50.000 17.88 0.00 0.00 4.02
3663 4433 0.179129 GGCATTTTGTCTGCGGATGG 60.179 55.000 0.00 0.00 40.59 3.51
3664 4434 0.523968 CGGCATTTTGTCTGCGGATG 60.524 55.000 0.00 0.00 41.05 3.51
3665 4435 1.802636 CGGCATTTTGTCTGCGGAT 59.197 52.632 0.00 0.00 41.05 4.18
3666 4436 2.976840 GCGGCATTTTGTCTGCGGA 61.977 57.895 6.98 0.00 41.05 5.54
3667 4437 2.504681 GCGGCATTTTGTCTGCGG 60.505 61.111 0.00 0.00 40.59 5.69
3683 4453 9.796120 TTTTAGTGCCTTTTATGTATAATGTGC 57.204 29.630 0.00 0.00 0.00 4.57
3715 4485 4.644234 TCAACTTCATTGAAACTTGCCTGA 59.356 37.500 0.01 0.00 44.59 3.86
3727 4497 8.382030 TGTATATGTGCCTATCAACTTCATTG 57.618 34.615 0.00 0.00 39.94 2.82
3747 4517 9.554724 GTTTGAGAAAGAAAATCGCATTGTATA 57.445 29.630 0.00 0.00 0.00 1.47
3748 4518 8.081633 TGTTTGAGAAAGAAAATCGCATTGTAT 58.918 29.630 0.00 0.00 0.00 2.29
3749 4519 7.378461 GTGTTTGAGAAAGAAAATCGCATTGTA 59.622 33.333 0.00 0.00 0.00 2.41
3750 4520 6.198966 GTGTTTGAGAAAGAAAATCGCATTGT 59.801 34.615 0.00 0.00 0.00 2.71
3751 4521 6.575132 GTGTTTGAGAAAGAAAATCGCATTG 58.425 36.000 0.00 0.00 0.00 2.82
3752 4522 5.399301 CGTGTTTGAGAAAGAAAATCGCATT 59.601 36.000 0.00 0.00 0.00 3.56
3753 4523 4.911610 CGTGTTTGAGAAAGAAAATCGCAT 59.088 37.500 0.00 0.00 0.00 4.73
3754 4524 4.278858 CGTGTTTGAGAAAGAAAATCGCA 58.721 39.130 0.00 0.00 0.00 5.10
3755 4525 3.117994 GCGTGTTTGAGAAAGAAAATCGC 59.882 43.478 0.00 0.00 35.84 4.58
3756 4526 4.278858 TGCGTGTTTGAGAAAGAAAATCG 58.721 39.130 0.00 0.00 0.00 3.34
3757 4527 4.676924 CCTGCGTGTTTGAGAAAGAAAATC 59.323 41.667 0.00 0.00 0.00 2.17
3758 4528 4.338118 TCCTGCGTGTTTGAGAAAGAAAAT 59.662 37.500 0.00 0.00 0.00 1.82
3759 4529 3.692101 TCCTGCGTGTTTGAGAAAGAAAA 59.308 39.130 0.00 0.00 0.00 2.29
3760 4530 3.275143 TCCTGCGTGTTTGAGAAAGAAA 58.725 40.909 0.00 0.00 0.00 2.52
3761 4531 2.872245 CTCCTGCGTGTTTGAGAAAGAA 59.128 45.455 0.00 0.00 0.00 2.52
3762 4532 2.102420 TCTCCTGCGTGTTTGAGAAAGA 59.898 45.455 0.00 0.00 31.26 2.52
3763 4533 2.483876 TCTCCTGCGTGTTTGAGAAAG 58.516 47.619 0.00 0.00 31.26 2.62
3764 4534 2.613026 TCTCCTGCGTGTTTGAGAAA 57.387 45.000 0.00 0.00 31.26 2.52
3765 4535 2.839486 ATCTCCTGCGTGTTTGAGAA 57.161 45.000 0.00 0.00 37.41 2.87
3766 4536 3.195610 ACATATCTCCTGCGTGTTTGAGA 59.804 43.478 0.00 0.00 38.17 3.27
3767 4537 3.308053 CACATATCTCCTGCGTGTTTGAG 59.692 47.826 0.00 0.00 0.00 3.02
3768 4538 3.261580 CACATATCTCCTGCGTGTTTGA 58.738 45.455 0.00 0.00 0.00 2.69
3769 4539 3.002791 ACACATATCTCCTGCGTGTTTG 58.997 45.455 0.00 0.00 37.53 2.93
3770 4540 3.334583 ACACATATCTCCTGCGTGTTT 57.665 42.857 0.00 0.00 37.53 2.83
3771 4541 4.099419 TGATACACATATCTCCTGCGTGTT 59.901 41.667 0.00 0.00 40.95 3.32
3772 4542 3.636764 TGATACACATATCTCCTGCGTGT 59.363 43.478 0.00 0.00 42.98 4.49
3773 4543 4.243007 TGATACACATATCTCCTGCGTG 57.757 45.455 0.00 0.00 38.47 5.34
3774 4544 4.524328 TGATGATACACATATCTCCTGCGT 59.476 41.667 0.00 0.00 39.56 5.24
3775 4545 5.064441 TGATGATACACATATCTCCTGCG 57.936 43.478 0.00 0.00 39.56 5.18
3776 4546 7.918536 ATTTGATGATACACATATCTCCTGC 57.081 36.000 0.00 0.00 39.56 4.85
3800 4570 9.142014 TGGATTCTTGTTCCATTTTCTTCTTAA 57.858 29.630 0.00 0.00 38.35 1.85
3801 4571 8.704849 TGGATTCTTGTTCCATTTTCTTCTTA 57.295 30.769 0.00 0.00 38.35 2.10
3802 4572 7.601705 TGGATTCTTGTTCCATTTTCTTCTT 57.398 32.000 0.00 0.00 38.35 2.52
3812 4582 4.649267 TGGTGTATGGATTCTTGTTCCA 57.351 40.909 0.00 0.00 46.86 3.53
3813 4583 4.580580 GGATGGTGTATGGATTCTTGTTCC 59.419 45.833 0.00 0.00 0.00 3.62
3814 4584 5.066505 GTGGATGGTGTATGGATTCTTGTTC 59.933 44.000 0.00 0.00 0.00 3.18
3815 4585 4.949856 GTGGATGGTGTATGGATTCTTGTT 59.050 41.667 0.00 0.00 0.00 2.83
3816 4586 4.228210 AGTGGATGGTGTATGGATTCTTGT 59.772 41.667 0.00 0.00 0.00 3.16
3817 4587 4.785301 AGTGGATGGTGTATGGATTCTTG 58.215 43.478 0.00 0.00 0.00 3.02
3818 4588 4.474651 TGAGTGGATGGTGTATGGATTCTT 59.525 41.667 0.00 0.00 0.00 2.52
3819 4589 4.040047 TGAGTGGATGGTGTATGGATTCT 58.960 43.478 0.00 0.00 0.00 2.40
3820 4590 4.130118 GTGAGTGGATGGTGTATGGATTC 58.870 47.826 0.00 0.00 0.00 2.52
3821 4591 3.523157 TGTGAGTGGATGGTGTATGGATT 59.477 43.478 0.00 0.00 0.00 3.01
3822 4592 3.114606 TGTGAGTGGATGGTGTATGGAT 58.885 45.455 0.00 0.00 0.00 3.41
3823 4593 2.236146 GTGTGAGTGGATGGTGTATGGA 59.764 50.000 0.00 0.00 0.00 3.41
3824 4594 2.027285 TGTGTGAGTGGATGGTGTATGG 60.027 50.000 0.00 0.00 0.00 2.74
3825 4595 3.333029 TGTGTGAGTGGATGGTGTATG 57.667 47.619 0.00 0.00 0.00 2.39
3826 4596 3.264193 ACATGTGTGAGTGGATGGTGTAT 59.736 43.478 0.00 0.00 0.00 2.29
3827 4597 2.637382 ACATGTGTGAGTGGATGGTGTA 59.363 45.455 0.00 0.00 0.00 2.90
3828 4598 1.421268 ACATGTGTGAGTGGATGGTGT 59.579 47.619 0.00 0.00 0.00 4.16
3829 4599 2.189594 ACATGTGTGAGTGGATGGTG 57.810 50.000 0.00 0.00 0.00 4.17
3830 4600 2.957402 AACATGTGTGAGTGGATGGT 57.043 45.000 0.00 0.00 0.00 3.55
3831 4601 2.672874 CGTAACATGTGTGAGTGGATGG 59.327 50.000 0.00 0.00 0.00 3.51
3832 4602 2.094258 GCGTAACATGTGTGAGTGGATG 59.906 50.000 0.00 0.00 0.00 3.51
3833 4603 2.289382 TGCGTAACATGTGTGAGTGGAT 60.289 45.455 0.00 0.00 0.00 3.41
3834 4604 1.069358 TGCGTAACATGTGTGAGTGGA 59.931 47.619 0.00 0.00 0.00 4.02
3835 4605 1.194547 GTGCGTAACATGTGTGAGTGG 59.805 52.381 0.00 0.00 0.00 4.00
3836 4606 1.864082 TGTGCGTAACATGTGTGAGTG 59.136 47.619 0.00 0.00 32.36 3.51
3837 4607 1.864711 GTGTGCGTAACATGTGTGAGT 59.135 47.619 0.00 0.00 41.97 3.41
3838 4608 1.194547 GGTGTGCGTAACATGTGTGAG 59.805 52.381 0.00 0.00 41.97 3.51
3839 4609 1.222300 GGTGTGCGTAACATGTGTGA 58.778 50.000 0.00 0.00 41.97 3.58
3840 4610 0.940833 TGGTGTGCGTAACATGTGTG 59.059 50.000 0.00 0.00 41.97 3.82
3841 4611 0.941542 GTGGTGTGCGTAACATGTGT 59.058 50.000 0.00 0.00 41.97 3.72
3842 4612 0.110867 CGTGGTGTGCGTAACATGTG 60.111 55.000 0.00 0.00 41.97 3.21
3843 4613 1.837538 GCGTGGTGTGCGTAACATGT 61.838 55.000 0.00 0.00 41.97 3.21
3844 4614 1.154488 GCGTGGTGTGCGTAACATG 60.154 57.895 0.00 0.00 41.97 3.21
3845 4615 0.038067 TAGCGTGGTGTGCGTAACAT 60.038 50.000 0.00 0.00 41.97 2.71
3846 4616 0.038067 ATAGCGTGGTGTGCGTAACA 60.038 50.000 0.00 0.00 37.44 2.41
3847 4617 1.073177 AATAGCGTGGTGTGCGTAAC 58.927 50.000 0.00 0.00 37.44 2.50
3848 4618 1.072391 CAATAGCGTGGTGTGCGTAA 58.928 50.000 0.00 0.00 37.44 3.18
3849 4619 0.038067 ACAATAGCGTGGTGTGCGTA 60.038 50.000 0.00 0.00 37.44 4.42
3850 4620 0.882927 AACAATAGCGTGGTGTGCGT 60.883 50.000 0.00 0.00 37.44 5.24
3851 4621 0.179225 GAACAATAGCGTGGTGTGCG 60.179 55.000 0.00 0.00 37.44 5.34
3852 4622 1.128692 GAGAACAATAGCGTGGTGTGC 59.871 52.381 0.00 0.00 0.00 4.57
3853 4623 2.412870 TGAGAACAATAGCGTGGTGTG 58.587 47.619 0.00 0.00 0.00 3.82
3854 4624 2.299013 TCTGAGAACAATAGCGTGGTGT 59.701 45.455 0.00 0.00 0.00 4.16
3855 4625 2.959516 TCTGAGAACAATAGCGTGGTG 58.040 47.619 0.00 0.00 0.00 4.17
3856 4626 3.895232 ATCTGAGAACAATAGCGTGGT 57.105 42.857 0.00 0.00 0.00 4.16
3857 4627 3.242543 GCAATCTGAGAACAATAGCGTGG 60.243 47.826 0.00 0.00 0.00 4.94
3858 4628 3.371898 TGCAATCTGAGAACAATAGCGTG 59.628 43.478 0.00 0.00 0.00 5.34
3859 4629 3.599343 TGCAATCTGAGAACAATAGCGT 58.401 40.909 0.00 0.00 0.00 5.07
3860 4630 4.770287 GATGCAATCTGAGAACAATAGCG 58.230 43.478 0.00 0.00 41.17 4.26
3877 4647 8.033626 TTTTAATGATAAACATGCACAGATGCA 58.966 29.630 4.16 4.16 46.68 3.96
3878 4648 8.410030 TTTTAATGATAAACATGCACAGATGC 57.590 30.769 0.00 0.00 40.77 3.91
3899 4669 9.985730 TCGTAGTCCTTTCTAACAATCTTTTTA 57.014 29.630 0.00 0.00 0.00 1.52
3900 4670 8.771766 GTCGTAGTCCTTTCTAACAATCTTTTT 58.228 33.333 0.00 0.00 0.00 1.94
3901 4671 7.387122 GGTCGTAGTCCTTTCTAACAATCTTTT 59.613 37.037 0.00 0.00 31.62 2.27
3902 4672 6.872547 GGTCGTAGTCCTTTCTAACAATCTTT 59.127 38.462 0.00 0.00 31.62 2.52
3903 4673 6.014840 TGGTCGTAGTCCTTTCTAACAATCTT 60.015 38.462 0.00 0.00 36.46 2.40
3904 4674 5.479375 TGGTCGTAGTCCTTTCTAACAATCT 59.521 40.000 0.00 0.00 36.46 2.40
3905 4675 5.717119 TGGTCGTAGTCCTTTCTAACAATC 58.283 41.667 0.00 0.00 36.46 2.67
3906 4676 5.733620 TGGTCGTAGTCCTTTCTAACAAT 57.266 39.130 0.00 0.00 36.46 2.71
3907 4677 5.534207 TTGGTCGTAGTCCTTTCTAACAA 57.466 39.130 0.00 0.00 36.46 2.83
3908 4678 5.163426 TGTTTGGTCGTAGTCCTTTCTAACA 60.163 40.000 0.00 0.00 36.46 2.41
3909 4679 5.291971 TGTTTGGTCGTAGTCCTTTCTAAC 58.708 41.667 0.00 0.00 36.46 2.34
3910 4680 5.534207 TGTTTGGTCGTAGTCCTTTCTAA 57.466 39.130 0.00 0.00 36.46 2.10
3911 4681 5.069516 AGTTGTTTGGTCGTAGTCCTTTCTA 59.930 40.000 0.00 0.00 36.46 2.10
3912 4682 4.124970 GTTGTTTGGTCGTAGTCCTTTCT 58.875 43.478 0.00 0.00 36.46 2.52
3913 4683 4.124970 AGTTGTTTGGTCGTAGTCCTTTC 58.875 43.478 0.00 0.00 36.46 2.62
3914 4684 4.146745 AGTTGTTTGGTCGTAGTCCTTT 57.853 40.909 0.00 0.00 36.46 3.11
3915 4685 3.832615 AGTTGTTTGGTCGTAGTCCTT 57.167 42.857 0.00 0.00 36.46 3.36
3916 4686 4.798593 GCTTAGTTGTTTGGTCGTAGTCCT 60.799 45.833 0.00 0.00 36.46 3.85
3917 4687 3.431233 GCTTAGTTGTTTGGTCGTAGTCC 59.569 47.826 0.00 0.00 35.92 3.85
3918 4688 4.304939 AGCTTAGTTGTTTGGTCGTAGTC 58.695 43.478 0.00 0.00 0.00 2.59
3919 4689 4.304939 GAGCTTAGTTGTTTGGTCGTAGT 58.695 43.478 0.00 0.00 0.00 2.73
3920 4690 3.678548 GGAGCTTAGTTGTTTGGTCGTAG 59.321 47.826 0.00 0.00 0.00 3.51
3921 4691 3.069872 TGGAGCTTAGTTGTTTGGTCGTA 59.930 43.478 0.00 0.00 0.00 3.43
3922 4692 2.158871 TGGAGCTTAGTTGTTTGGTCGT 60.159 45.455 0.00 0.00 0.00 4.34
3923 4693 2.489971 TGGAGCTTAGTTGTTTGGTCG 58.510 47.619 0.00 0.00 0.00 4.79
3924 4694 3.253432 CCTTGGAGCTTAGTTGTTTGGTC 59.747 47.826 0.00 0.00 0.00 4.02
3925 4695 3.222603 CCTTGGAGCTTAGTTGTTTGGT 58.777 45.455 0.00 0.00 0.00 3.67
3926 4696 2.558359 CCCTTGGAGCTTAGTTGTTTGG 59.442 50.000 0.00 0.00 0.00 3.28
3927 4697 2.029918 GCCCTTGGAGCTTAGTTGTTTG 60.030 50.000 0.00 0.00 0.00 2.93
3928 4698 2.239400 GCCCTTGGAGCTTAGTTGTTT 58.761 47.619 0.00 0.00 0.00 2.83
3929 4699 1.547901 GGCCCTTGGAGCTTAGTTGTT 60.548 52.381 0.00 0.00 0.00 2.83
3930 4700 0.038310 GGCCCTTGGAGCTTAGTTGT 59.962 55.000 0.00 0.00 0.00 3.32
3931 4701 1.026718 CGGCCCTTGGAGCTTAGTTG 61.027 60.000 0.00 0.00 0.00 3.16
3932 4702 1.299976 CGGCCCTTGGAGCTTAGTT 59.700 57.895 0.00 0.00 0.00 2.24
3933 4703 2.670148 CCGGCCCTTGGAGCTTAGT 61.670 63.158 0.00 0.00 0.00 2.24
3934 4704 2.190578 CCGGCCCTTGGAGCTTAG 59.809 66.667 0.00 0.00 0.00 2.18
3935 4705 3.407967 CCCGGCCCTTGGAGCTTA 61.408 66.667 0.00 0.00 0.00 3.09
3946 4716 3.860930 TTTCTTGACTGCCCCGGCC 62.861 63.158 2.62 0.00 41.09 6.13
3947 4717 2.282180 TTTCTTGACTGCCCCGGC 60.282 61.111 0.00 0.00 42.35 6.13
3948 4718 0.674895 CTCTTTCTTGACTGCCCCGG 60.675 60.000 0.00 0.00 0.00 5.73
3949 4719 0.321671 TCTCTTTCTTGACTGCCCCG 59.678 55.000 0.00 0.00 0.00 5.73
3950 4720 1.339535 CCTCTCTTTCTTGACTGCCCC 60.340 57.143 0.00 0.00 0.00 5.80
3951 4721 1.948144 GCCTCTCTTTCTTGACTGCCC 60.948 57.143 0.00 0.00 0.00 5.36
3952 4722 1.447945 GCCTCTCTTTCTTGACTGCC 58.552 55.000 0.00 0.00 0.00 4.85
3953 4723 1.447945 GGCCTCTCTTTCTTGACTGC 58.552 55.000 0.00 0.00 0.00 4.40
3954 4724 1.339535 GGGGCCTCTCTTTCTTGACTG 60.340 57.143 0.84 0.00 0.00 3.51
3955 4725 0.988063 GGGGCCTCTCTTTCTTGACT 59.012 55.000 0.84 0.00 0.00 3.41
3956 4726 0.693049 TGGGGCCTCTCTTTCTTGAC 59.307 55.000 3.07 0.00 0.00 3.18
3957 4727 1.283029 CATGGGGCCTCTCTTTCTTGA 59.717 52.381 3.07 0.00 0.00 3.02
3958 4728 1.760192 CATGGGGCCTCTCTTTCTTG 58.240 55.000 3.07 0.00 0.00 3.02
3959 4729 0.033699 GCATGGGGCCTCTCTTTCTT 60.034 55.000 3.07 0.00 36.11 2.52
3960 4730 1.611965 GCATGGGGCCTCTCTTTCT 59.388 57.895 3.07 0.00 36.11 2.52
3961 4731 1.821332 CGCATGGGGCCTCTCTTTC 60.821 63.158 3.07 0.00 40.31 2.62
3962 4732 2.273449 CGCATGGGGCCTCTCTTT 59.727 61.111 3.07 0.00 40.31 2.52
3963 4733 4.496336 GCGCATGGGGCCTCTCTT 62.496 66.667 3.07 0.00 40.31 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.