Multiple sequence alignment - TraesCS2B01G210300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G210300 chr2B 100.000 2255 0 0 1 2255 193389059 193391313 0.000000e+00 4165
1 TraesCS2B01G210300 chr2D 91.195 1715 63 35 582 2255 135600151 135601818 0.000000e+00 2250
2 TraesCS2B01G210300 chr2D 92.429 317 8 6 1 310 135599513 135599820 2.660000e-119 438
3 TraesCS2B01G210300 chr2D 90.761 184 4 2 309 492 135599858 135600028 1.350000e-57 233
4 TraesCS2B01G210300 chr2A 90.957 1703 78 35 582 2255 143722540 143724195 0.000000e+00 2222
5 TraesCS2B01G210300 chr2A 84.615 611 65 11 1656 2255 143835523 143836115 4.170000e-162 580
6 TraesCS2B01G210300 chr2A 91.456 316 10 10 1 306 143721868 143722176 3.460000e-113 418
7 TraesCS2B01G210300 chr2A 93.514 185 10 2 309 492 143722234 143722417 7.930000e-70 274


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G210300 chr2B 193389059 193391313 2254 False 4165.000000 4165 100.000000 1 2255 1 chr2B.!!$F1 2254
1 TraesCS2B01G210300 chr2D 135599513 135601818 2305 False 973.666667 2250 91.461667 1 2255 3 chr2D.!!$F1 2254
2 TraesCS2B01G210300 chr2A 143721868 143724195 2327 False 971.333333 2222 91.975667 1 2255 3 chr2A.!!$F2 2254
3 TraesCS2B01G210300 chr2A 143835523 143836115 592 False 580.000000 580 84.615000 1656 2255 1 chr2A.!!$F1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 453 1.136305 CCGCTAACCTCCGATTCTTCA 59.864 52.381 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1321 1483 0.035152 AGCCACGATCCAAGCATGAA 60.035 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 189 1.671742 GAAAGCTGAGGTCACGGGA 59.328 57.895 0.00 0.0 0.00 5.14
239 248 4.468615 GACGCACGCTCTCGCTCT 62.469 66.667 0.00 0.0 39.84 4.09
247 256 1.152963 GCTCTCGCTCTCCCTCTCT 60.153 63.158 0.00 0.0 0.00 3.10
278 288 3.636313 CTGCATGGCCGCTGGTTTG 62.636 63.158 0.00 0.0 0.00 2.93
310 334 5.987953 GCAAAAGGAGAAAAGAAAGATGCTT 59.012 36.000 0.00 0.0 0.00 3.91
311 335 6.145209 GCAAAAGGAGAAAAGAAAGATGCTTC 59.855 38.462 0.00 0.0 0.00 3.86
387 453 1.136305 CCGCTAACCTCCGATTCTTCA 59.864 52.381 0.00 0.0 0.00 3.02
414 480 3.764237 AAACTCCTCACCTAAAAGCGA 57.236 42.857 0.00 0.0 0.00 4.93
458 524 2.979678 GGGACTCCCATGCCTTAATCTA 59.020 50.000 9.53 0.0 44.65 1.98
459 525 3.244596 GGGACTCCCATGCCTTAATCTAC 60.245 52.174 9.53 0.0 44.65 2.59
464 530 3.138283 TCCCATGCCTTAATCTACCAAGG 59.862 47.826 0.00 0.0 43.58 3.61
502 569 6.665465 TCTCCATAACATAACATACGACGAG 58.335 40.000 0.00 0.0 0.00 4.18
503 570 5.217393 TCCATAACATAACATACGACGAGC 58.783 41.667 0.00 0.0 0.00 5.03
504 571 5.009310 TCCATAACATAACATACGACGAGCT 59.991 40.000 0.00 0.0 0.00 4.09
505 572 5.690409 CCATAACATAACATACGACGAGCTT 59.310 40.000 0.00 0.0 0.00 3.74
506 573 6.200286 CCATAACATAACATACGACGAGCTTT 59.800 38.462 0.00 0.0 0.00 3.51
507 574 7.254319 CCATAACATAACATACGACGAGCTTTT 60.254 37.037 0.00 0.0 0.00 2.27
508 575 5.450376 ACATAACATACGACGAGCTTTTG 57.550 39.130 0.00 0.0 0.00 2.44
509 576 4.927425 ACATAACATACGACGAGCTTTTGT 59.073 37.500 0.00 0.0 0.00 2.83
510 577 6.094719 ACATAACATACGACGAGCTTTTGTA 58.905 36.000 0.00 0.0 0.00 2.41
511 578 4.898328 AACATACGACGAGCTTTTGTAC 57.102 40.909 0.00 0.0 0.00 2.90
512 579 3.904571 ACATACGACGAGCTTTTGTACA 58.095 40.909 0.00 0.0 0.00 2.90
513 580 3.671928 ACATACGACGAGCTTTTGTACAC 59.328 43.478 0.00 0.0 0.00 2.90
514 581 2.212869 ACGACGAGCTTTTGTACACA 57.787 45.000 0.00 0.0 0.00 3.72
515 582 2.750948 ACGACGAGCTTTTGTACACAT 58.249 42.857 0.00 0.0 0.00 3.21
516 583 3.904571 ACGACGAGCTTTTGTACACATA 58.095 40.909 0.00 0.0 0.00 2.29
517 584 4.300803 ACGACGAGCTTTTGTACACATAA 58.699 39.130 0.00 0.0 0.00 1.90
518 585 4.149396 ACGACGAGCTTTTGTACACATAAC 59.851 41.667 0.00 0.0 0.00 1.89
519 586 4.149221 CGACGAGCTTTTGTACACATAACA 59.851 41.667 0.00 0.0 0.00 2.41
520 587 5.338614 ACGAGCTTTTGTACACATAACAC 57.661 39.130 0.00 0.0 0.00 3.32
521 588 4.084745 ACGAGCTTTTGTACACATAACACG 60.085 41.667 0.00 0.0 0.00 4.49
522 589 4.665645 CGAGCTTTTGTACACATAACACGG 60.666 45.833 0.00 0.0 0.00 4.94
523 590 4.131596 AGCTTTTGTACACATAACACGGT 58.868 39.130 0.00 0.0 0.00 4.83
524 591 5.299148 AGCTTTTGTACACATAACACGGTA 58.701 37.500 0.00 0.0 0.00 4.02
525 592 5.178067 AGCTTTTGTACACATAACACGGTAC 59.822 40.000 0.00 0.0 37.28 3.34
526 593 5.050227 GCTTTTGTACACATAACACGGTACA 60.050 40.000 0.00 0.0 42.95 2.90
527 594 5.903764 TTTGTACACATAACACGGTACAC 57.096 39.130 0.00 0.0 43.94 2.90
528 595 4.581077 TGTACACATAACACGGTACACA 57.419 40.909 0.00 0.0 40.63 3.72
529 596 4.548494 TGTACACATAACACGGTACACAG 58.452 43.478 0.00 0.0 40.63 3.66
544 611 5.453339 CGGTACACAGGGAGATGATATTTGT 60.453 44.000 0.00 0.0 0.00 2.83
545 612 6.239204 CGGTACACAGGGAGATGATATTTGTA 60.239 42.308 0.00 0.0 0.00 2.41
546 613 7.506114 GGTACACAGGGAGATGATATTTGTAA 58.494 38.462 0.00 0.0 0.00 2.41
547 614 7.441458 GGTACACAGGGAGATGATATTTGTAAC 59.559 40.741 0.00 0.0 0.00 2.50
548 615 6.957631 ACACAGGGAGATGATATTTGTAACA 58.042 36.000 0.00 0.0 0.00 2.41
550 617 7.500227 ACACAGGGAGATGATATTTGTAACATG 59.500 37.037 0.00 0.0 0.00 3.21
551 618 7.000472 ACAGGGAGATGATATTTGTAACATGG 59.000 38.462 0.00 0.0 0.00 3.66
556 679 9.739276 GGAGATGATATTTGTAACATGGGATTA 57.261 33.333 0.00 0.0 0.00 1.75
606 733 2.632996 ACGAATGGGTCAGAGACAAGAA 59.367 45.455 0.00 0.0 33.68 2.52
616 743 2.035961 CAGAGACAAGAACCGGAACAGA 59.964 50.000 9.46 0.0 0.00 3.41
1050 1209 1.461127 CTTTTCTTCCTCGTCGCCTTG 59.539 52.381 0.00 0.0 0.00 3.61
1061 1220 3.710722 CGCCTTGCTCCTCCTGGT 61.711 66.667 0.00 0.0 34.23 4.00
1481 1659 6.966534 ACACATTTGACATTCCTTCTTCTT 57.033 33.333 0.00 0.0 0.00 2.52
1482 1660 9.739276 ATACACATTTGACATTCCTTCTTCTTA 57.261 29.630 0.00 0.0 0.00 2.10
1490 1668 9.823647 TTGACATTCCTTCTTCTTATAGATGAC 57.176 33.333 0.00 0.0 29.48 3.06
1491 1669 9.206690 TGACATTCCTTCTTCTTATAGATGACT 57.793 33.333 0.00 0.0 29.48 3.41
1503 1686 9.587772 TTCTTATAGATGACTAAAGTGCAGTTC 57.412 33.333 7.36 0.0 32.04 3.01
1521 1704 5.056480 CAGTTCATAGTGGGCAATTCGATA 58.944 41.667 0.00 0.0 0.00 2.92
1522 1705 5.527214 CAGTTCATAGTGGGCAATTCGATAA 59.473 40.000 0.00 0.0 0.00 1.75
1523 1706 6.205464 CAGTTCATAGTGGGCAATTCGATAAT 59.795 38.462 0.00 0.0 0.00 1.28
1524 1707 7.387673 CAGTTCATAGTGGGCAATTCGATAATA 59.612 37.037 0.00 0.0 0.00 0.98
1525 1708 7.387948 AGTTCATAGTGGGCAATTCGATAATAC 59.612 37.037 0.00 0.0 0.00 1.89
1527 1710 6.873605 TCATAGTGGGCAATTCGATAATACTG 59.126 38.462 0.00 0.0 0.00 2.74
1529 1712 5.057149 AGTGGGCAATTCGATAATACTGTC 58.943 41.667 0.00 0.0 0.00 3.51
1543 1726 7.411480 CGATAATACTGTCTTGTTTTCGCTTCA 60.411 37.037 0.00 0.0 0.00 3.02
1544 1727 6.371809 AATACTGTCTTGTTTTCGCTTCAA 57.628 33.333 0.00 0.0 0.00 2.69
1559 1742 4.977963 TCGCTTCAATTTCTGCAAAAAGAG 59.022 37.500 0.00 0.0 0.00 2.85
1597 1780 0.389948 GACCCACTTGTCAGCCTACG 60.390 60.000 0.00 0.0 35.29 3.51
1599 1782 1.741770 CCACTTGTCAGCCTACGCC 60.742 63.158 0.00 0.0 34.57 5.68
1600 1783 1.005037 CACTTGTCAGCCTACGCCA 60.005 57.895 0.00 0.0 34.57 5.69
1601 1784 1.016130 CACTTGTCAGCCTACGCCAG 61.016 60.000 0.00 0.0 34.57 4.85
1602 1785 1.293498 CTTGTCAGCCTACGCCAGT 59.707 57.895 0.00 0.0 34.57 4.00
1603 1786 0.737715 CTTGTCAGCCTACGCCAGTC 60.738 60.000 0.00 0.0 34.57 3.51
1604 1787 2.202623 GTCAGCCTACGCCAGTCG 60.203 66.667 0.00 0.0 45.38 4.18
1605 1788 2.360726 TCAGCCTACGCCAGTCGA 60.361 61.111 0.00 0.0 41.67 4.20
1606 1789 1.974875 TCAGCCTACGCCAGTCGAA 60.975 57.895 0.00 0.0 41.67 3.71
1607 1790 1.517257 CAGCCTACGCCAGTCGAAG 60.517 63.158 0.00 0.0 41.67 3.79
1608 1791 2.886124 GCCTACGCCAGTCGAAGC 60.886 66.667 0.00 0.0 41.67 3.86
1609 1792 2.202756 CCTACGCCAGTCGAAGCC 60.203 66.667 0.00 0.0 41.67 4.35
1610 1793 2.711922 CCTACGCCAGTCGAAGCCT 61.712 63.158 0.00 0.0 41.67 4.58
1625 1808 2.032071 CCTTCGCCTCAACGGGTT 59.968 61.111 0.00 0.0 0.00 4.11
1635 1818 1.890041 CAACGGGTTGCGTTCTCCA 60.890 57.895 0.00 0.0 33.45 3.86
1701 1884 1.374125 CGCACCGGTTCAGTGATCA 60.374 57.895 2.97 0.0 37.42 2.92
1709 1892 1.197721 GGTTCAGTGATCAACCGCAAG 59.802 52.381 0.00 0.0 33.01 4.01
1793 1982 2.203126 GGCTCAGATCAAGGCCGG 60.203 66.667 0.00 0.0 35.08 6.13
1883 2073 0.387622 CCGTCTCGCTCGGTTGTTAA 60.388 55.000 4.97 0.0 42.62 2.01
1918 2108 2.363147 GTCTCGAGCCCCTGACCT 60.363 66.667 7.81 0.0 0.00 3.85
2056 2246 4.431131 CCTGGTTGGCTCCCGCAT 62.431 66.667 0.00 0.0 38.10 4.73
2067 2257 1.954927 CTCCCGCATCTTACCTTTCC 58.045 55.000 0.00 0.0 0.00 3.13
2242 2435 1.099295 TCTATGACATCGTCGGCCGT 61.099 55.000 27.15 3.6 34.95 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
239 248 1.212688 CAGCAGAGAGAGAGAGAGGGA 59.787 57.143 0.00 0.00 0.00 4.20
275 285 1.407258 CTCCTTTTGCCGAACCACAAA 59.593 47.619 0.00 0.00 34.11 2.83
278 288 1.314730 TTCTCCTTTTGCCGAACCAC 58.685 50.000 0.00 0.00 0.00 4.16
310 334 2.578163 CTTTCCATGCGCGAGGGAGA 62.578 60.000 12.10 7.26 31.19 3.71
311 335 2.125147 TTTCCATGCGCGAGGGAG 60.125 61.111 12.10 0.00 31.19 4.30
387 453 6.741801 GCTTTTAGGTGAGGAGTTTAGTGAGT 60.742 42.308 0.00 0.00 0.00 3.41
414 480 0.538057 CAAGGCACAGGTGTCCATGT 60.538 55.000 12.96 0.00 35.39 3.21
458 524 6.381994 TGGAGATAGAATACGTTAACCTTGGT 59.618 38.462 0.00 0.00 0.00 3.67
459 525 6.812998 TGGAGATAGAATACGTTAACCTTGG 58.187 40.000 0.00 0.00 0.00 3.61
492 559 3.671459 TGTGTACAAAAGCTCGTCGTATG 59.329 43.478 0.00 0.00 0.00 2.39
494 561 3.352554 TGTGTACAAAAGCTCGTCGTA 57.647 42.857 0.00 0.00 0.00 3.43
496 563 4.149221 TGTTATGTGTACAAAAGCTCGTCG 59.851 41.667 0.00 0.00 0.00 5.12
498 565 4.084745 CGTGTTATGTGTACAAAAGCTCGT 60.085 41.667 0.00 0.00 0.00 4.18
499 566 4.382831 CGTGTTATGTGTACAAAAGCTCG 58.617 43.478 0.00 0.00 0.00 5.03
502 569 4.477302 ACCGTGTTATGTGTACAAAAGC 57.523 40.909 0.00 0.00 0.00 3.51
503 570 6.018913 TGTGTACCGTGTTATGTGTACAAAAG 60.019 38.462 0.00 0.00 43.51 2.27
504 571 5.814188 TGTGTACCGTGTTATGTGTACAAAA 59.186 36.000 0.00 0.00 43.51 2.44
505 572 5.354767 TGTGTACCGTGTTATGTGTACAAA 58.645 37.500 0.00 0.00 43.51 2.83
506 573 4.941657 TGTGTACCGTGTTATGTGTACAA 58.058 39.130 0.00 0.00 43.51 2.41
507 574 4.548494 CTGTGTACCGTGTTATGTGTACA 58.452 43.478 0.00 0.00 40.74 2.90
508 575 3.922240 CCTGTGTACCGTGTTATGTGTAC 59.078 47.826 0.00 0.00 35.32 2.90
509 576 3.056678 CCCTGTGTACCGTGTTATGTGTA 60.057 47.826 0.00 0.00 0.00 2.90
510 577 2.289195 CCCTGTGTACCGTGTTATGTGT 60.289 50.000 0.00 0.00 0.00 3.72
511 578 2.028839 TCCCTGTGTACCGTGTTATGTG 60.029 50.000 0.00 0.00 0.00 3.21
512 579 2.232941 CTCCCTGTGTACCGTGTTATGT 59.767 50.000 0.00 0.00 0.00 2.29
513 580 2.494471 TCTCCCTGTGTACCGTGTTATG 59.506 50.000 0.00 0.00 0.00 1.90
514 581 2.811410 TCTCCCTGTGTACCGTGTTAT 58.189 47.619 0.00 0.00 0.00 1.89
515 582 2.291209 TCTCCCTGTGTACCGTGTTA 57.709 50.000 0.00 0.00 0.00 2.41
516 583 1.275291 CATCTCCCTGTGTACCGTGTT 59.725 52.381 0.00 0.00 0.00 3.32
517 584 0.895530 CATCTCCCTGTGTACCGTGT 59.104 55.000 0.00 0.00 0.00 4.49
518 585 1.182667 TCATCTCCCTGTGTACCGTG 58.817 55.000 0.00 0.00 0.00 4.94
519 586 2.160721 ATCATCTCCCTGTGTACCGT 57.839 50.000 0.00 0.00 0.00 4.83
520 587 4.873746 AATATCATCTCCCTGTGTACCG 57.126 45.455 0.00 0.00 0.00 4.02
521 588 5.930135 ACAAATATCATCTCCCTGTGTACC 58.070 41.667 0.00 0.00 0.00 3.34
522 589 7.985184 TGTTACAAATATCATCTCCCTGTGTAC 59.015 37.037 0.00 0.00 0.00 2.90
523 590 8.084985 TGTTACAAATATCATCTCCCTGTGTA 57.915 34.615 0.00 0.00 0.00 2.90
524 591 6.957631 TGTTACAAATATCATCTCCCTGTGT 58.042 36.000 0.00 0.00 0.00 3.72
525 592 7.040892 CCATGTTACAAATATCATCTCCCTGTG 60.041 40.741 0.00 0.00 0.00 3.66
526 593 7.000472 CCATGTTACAAATATCATCTCCCTGT 59.000 38.462 0.00 0.00 0.00 4.00
527 594 6.432162 CCCATGTTACAAATATCATCTCCCTG 59.568 42.308 0.00 0.00 0.00 4.45
528 595 6.332635 TCCCATGTTACAAATATCATCTCCCT 59.667 38.462 0.00 0.00 0.00 4.20
529 596 6.542821 TCCCATGTTACAAATATCATCTCCC 58.457 40.000 0.00 0.00 0.00 4.30
563 686 7.380536 TCGTTGCTTAGGAGTATTTCAAAGTA 58.619 34.615 0.00 0.00 0.00 2.24
568 691 5.584649 CCATTCGTTGCTTAGGAGTATTTCA 59.415 40.000 0.00 0.00 0.00 2.69
575 698 2.280628 GACCCATTCGTTGCTTAGGAG 58.719 52.381 0.00 0.00 0.00 3.69
576 699 1.626321 TGACCCATTCGTTGCTTAGGA 59.374 47.619 0.00 0.00 0.00 2.94
577 700 2.009774 CTGACCCATTCGTTGCTTAGG 58.990 52.381 0.00 0.00 0.00 2.69
578 701 2.932614 CTCTGACCCATTCGTTGCTTAG 59.067 50.000 0.00 0.00 0.00 2.18
579 702 2.565391 TCTCTGACCCATTCGTTGCTTA 59.435 45.455 0.00 0.00 0.00 3.09
580 703 1.347707 TCTCTGACCCATTCGTTGCTT 59.652 47.619 0.00 0.00 0.00 3.91
606 733 1.122019 AGCAGAAGGTCTGTTCCGGT 61.122 55.000 0.00 0.00 45.94 5.28
616 743 0.390866 CGCAGACATCAGCAGAAGGT 60.391 55.000 0.00 0.00 0.00 3.50
676 811 4.202441 CATGACTGAAAGGGTAGGAATGG 58.798 47.826 0.00 0.00 39.30 3.16
792 934 0.584876 CACGTTTTGACGGGGAGAAC 59.415 55.000 3.90 0.00 37.45 3.01
890 1036 2.309162 TCTCCTGAGGCAGTGTACTACT 59.691 50.000 0.00 0.00 41.36 2.57
1050 1209 4.459089 GTCGCCACCAGGAGGAGC 62.459 72.222 7.20 0.00 38.69 4.70
1321 1483 0.035152 AGCCACGATCCAAGCATGAA 60.035 50.000 0.00 0.00 0.00 2.57
1322 1484 0.745486 CAGCCACGATCCAAGCATGA 60.745 55.000 0.00 0.00 0.00 3.07
1397 1573 3.525268 AAACACTGGAGCCAACAAAAG 57.475 42.857 0.00 0.00 0.00 2.27
1482 1660 8.700051 ACTATGAACTGCACTTTAGTCATCTAT 58.300 33.333 0.00 0.00 0.00 1.98
1490 1668 3.375299 GCCCACTATGAACTGCACTTTAG 59.625 47.826 0.00 0.00 0.00 1.85
1491 1669 3.244735 TGCCCACTATGAACTGCACTTTA 60.245 43.478 0.00 0.00 0.00 1.85
1492 1670 2.162681 GCCCACTATGAACTGCACTTT 58.837 47.619 0.00 0.00 0.00 2.66
1503 1686 6.650807 ACAGTATTATCGAATTGCCCACTATG 59.349 38.462 0.00 0.00 0.00 2.23
1521 1704 6.371809 TTGAAGCGAAAACAAGACAGTATT 57.628 33.333 0.00 0.00 0.00 1.89
1522 1705 6.560253 ATTGAAGCGAAAACAAGACAGTAT 57.440 33.333 0.00 0.00 0.00 2.12
1523 1706 6.371809 AATTGAAGCGAAAACAAGACAGTA 57.628 33.333 0.00 0.00 0.00 2.74
1524 1707 4.900635 ATTGAAGCGAAAACAAGACAGT 57.099 36.364 0.00 0.00 0.00 3.55
1525 1708 5.973565 AGAAATTGAAGCGAAAACAAGACAG 59.026 36.000 0.00 0.00 0.00 3.51
1527 1710 5.331830 GCAGAAATTGAAGCGAAAACAAGAC 60.332 40.000 0.00 0.00 0.00 3.01
1529 1712 4.503734 TGCAGAAATTGAAGCGAAAACAAG 59.496 37.500 0.00 0.00 0.00 3.16
1543 1726 5.217978 TGCCATCTCTTTTTGCAGAAATT 57.782 34.783 2.48 0.00 0.00 1.82
1544 1727 4.877378 TGCCATCTCTTTTTGCAGAAAT 57.123 36.364 2.48 0.00 0.00 2.17
1575 1758 3.050275 GCTGACAAGTGGGTCCGC 61.050 66.667 0.00 0.00 40.05 5.54
1579 1762 1.671742 CGTAGGCTGACAAGTGGGT 59.328 57.895 0.00 0.00 0.00 4.51
1608 1791 2.032071 AACCCGTTGAGGCGAAGG 59.968 61.111 0.00 0.00 39.21 3.46
1609 1792 2.966309 GCAACCCGTTGAGGCGAAG 61.966 63.158 11.70 0.00 42.93 3.79
1610 1793 2.975799 GCAACCCGTTGAGGCGAA 60.976 61.111 11.70 0.00 42.93 4.70
1625 1808 2.962569 CGGAGACTGGAGAACGCA 59.037 61.111 0.00 0.00 0.00 5.24
1684 1867 0.517316 GTTGATCACTGAACCGGTGC 59.483 55.000 8.52 6.80 40.25 5.01
1689 1872 1.197721 CTTGCGGTTGATCACTGAACC 59.802 52.381 0.00 0.00 38.65 3.62
1692 1875 1.291184 CGCTTGCGGTTGATCACTGA 61.291 55.000 7.16 0.00 32.74 3.41
1779 1968 3.089874 CCCCCGGCCTTGATCTGA 61.090 66.667 0.00 0.00 0.00 3.27
1883 2073 3.204827 GGCGAGGCGTGCATGAAT 61.205 61.111 10.93 0.00 0.00 2.57
2056 2246 0.978907 GTGGGGACGGAAAGGTAAGA 59.021 55.000 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.