Multiple sequence alignment - TraesCS2B01G200400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G200400 chr2B 100.000 2471 0 0 1 2471 178858722 178856252 0.000000e+00 4564.0
1 TraesCS2B01G200400 chr2B 99.541 436 0 2 1 435 178870277 178869843 0.000000e+00 793.0
2 TraesCS2B01G200400 chr2B 90.076 131 12 1 938 1067 388889159 388889029 4.230000e-38 169.0
3 TraesCS2B01G200400 chr2D 91.617 668 33 9 954 1598 125512945 125512278 0.000000e+00 902.0
4 TraesCS2B01G200400 chr2D 93.103 290 15 3 1663 1950 125512149 125511863 1.060000e-113 420.0
5 TraesCS2B01G200400 chr2D 90.288 278 22 2 546 818 125513865 125513588 2.340000e-95 359.0
6 TraesCS2B01G200400 chr2D 97.656 128 2 1 835 961 125513157 125513030 4.140000e-53 219.0
7 TraesCS2B01G200400 chr2D 93.617 94 5 1 1598 1690 125512241 125512148 3.310000e-29 139.0
8 TraesCS2B01G200400 chr1D 84.733 524 49 13 1976 2471 427797994 427797474 1.710000e-136 496.0
9 TraesCS2B01G200400 chr1D 91.165 249 20 2 1214 1461 417918220 417917973 1.090000e-88 337.0
10 TraesCS2B01G200400 chr5A 89.779 362 36 1 938 1298 170832956 170832595 1.730000e-126 462.0
11 TraesCS2B01G200400 chr1A 87.595 395 31 8 1976 2352 585010949 585011343 2.260000e-120 442.0
12 TraesCS2B01G200400 chr3B 89.625 347 25 4 1976 2311 519763754 519763408 4.880000e-117 431.0
13 TraesCS2B01G200400 chr3B 76.509 464 73 30 11 458 819893669 819893226 1.150000e-53 220.0
14 TraesCS2B01G200400 chr3B 86.286 175 11 2 2309 2471 519756329 519756156 7.020000e-41 178.0
15 TraesCS2B01G200400 chr6A 89.919 248 22 2 1214 1461 53577849 53578093 1.430000e-82 316.0
16 TraesCS2B01G200400 chr7A 84.615 260 24 4 2224 2470 518647728 518647984 6.830000e-61 244.0
17 TraesCS2B01G200400 chr2A 96.154 52 2 0 1158 1209 756837354 756837405 4.380000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G200400 chr2B 178856252 178858722 2470 True 4564.0 4564 100.0000 1 2471 1 chr2B.!!$R1 2470
1 TraesCS2B01G200400 chr2D 125511863 125513865 2002 True 407.8 902 93.2562 546 1950 5 chr2D.!!$R1 1404
2 TraesCS2B01G200400 chr1D 427797474 427797994 520 True 496.0 496 84.7330 1976 2471 1 chr1D.!!$R2 495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
596 597 0.036294 GGGAGTCCGTGGGAGAAAAG 60.036 60.0 2.26 0.0 29.39 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1705 2305 0.252513 TACCAGGTTGCTAGGAGGCA 60.253 55.0 0.0 0.0 40.74 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 8.500753 AAAATACCAAGACATTTATGCTACGA 57.499 30.769 0.00 0.00 0.00 3.43
68 69 8.500753 AAATACCAAGACATTTATGCTACGAA 57.499 30.769 0.00 0.00 0.00 3.85
69 70 8.677148 AATACCAAGACATTTATGCTACGAAT 57.323 30.769 0.00 0.00 0.00 3.34
70 71 8.677148 ATACCAAGACATTTATGCTACGAATT 57.323 30.769 0.00 0.00 0.00 2.17
71 72 7.391148 ACCAAGACATTTATGCTACGAATTT 57.609 32.000 0.00 0.00 0.00 1.82
72 73 7.250569 ACCAAGACATTTATGCTACGAATTTG 58.749 34.615 0.00 0.00 0.00 2.32
73 74 7.120579 ACCAAGACATTTATGCTACGAATTTGA 59.879 33.333 0.00 0.00 0.00 2.69
74 75 7.429340 CCAAGACATTTATGCTACGAATTTGAC 59.571 37.037 0.00 0.00 0.00 3.18
75 76 7.609760 AGACATTTATGCTACGAATTTGACA 57.390 32.000 0.00 0.00 0.00 3.58
76 77 8.213518 AGACATTTATGCTACGAATTTGACAT 57.786 30.769 0.00 3.21 0.00 3.06
77 78 8.677300 AGACATTTATGCTACGAATTTGACATT 58.323 29.630 0.00 0.00 0.00 2.71
78 79 8.619146 ACATTTATGCTACGAATTTGACATTG 57.381 30.769 0.00 0.00 0.00 2.82
79 80 7.220683 ACATTTATGCTACGAATTTGACATTGC 59.779 33.333 0.00 0.00 0.00 3.56
80 81 4.700268 ATGCTACGAATTTGACATTGCA 57.300 36.364 0.00 3.03 0.00 4.08
81 82 4.495911 TGCTACGAATTTGACATTGCAA 57.504 36.364 0.00 0.00 0.00 4.08
82 83 4.864633 TGCTACGAATTTGACATTGCAAA 58.135 34.783 1.71 8.13 41.49 3.68
99 100 9.609950 ACATTGCAAATTATTTTGTTTGTATGC 57.390 25.926 1.71 0.00 43.43 3.14
100 101 9.828852 CATTGCAAATTATTTTGTTTGTATGCT 57.171 25.926 1.71 0.00 43.43 3.79
103 104 9.920133 TGCAAATTATTTTGTTTGTATGCTAGA 57.080 25.926 10.80 0.00 43.43 2.43
111 112 9.995003 ATTTTGTTTGTATGCTAGAAATTTCCA 57.005 25.926 14.61 6.34 0.00 3.53
112 113 9.995003 TTTTGTTTGTATGCTAGAAATTTCCAT 57.005 25.926 14.61 12.81 0.00 3.41
113 114 8.984891 TTGTTTGTATGCTAGAAATTTCCATG 57.015 30.769 14.61 6.46 0.00 3.66
114 115 8.347004 TGTTTGTATGCTAGAAATTTCCATGA 57.653 30.769 14.61 0.00 0.00 3.07
115 116 8.970020 TGTTTGTATGCTAGAAATTTCCATGAT 58.030 29.630 14.61 5.31 0.00 2.45
116 117 9.241317 GTTTGTATGCTAGAAATTTCCATGATG 57.759 33.333 14.61 0.88 0.00 3.07
117 118 8.523915 TTGTATGCTAGAAATTTCCATGATGT 57.476 30.769 14.61 0.00 0.00 3.06
118 119 8.523915 TGTATGCTAGAAATTTCCATGATGTT 57.476 30.769 14.61 0.00 0.00 2.71
119 120 8.970020 TGTATGCTAGAAATTTCCATGATGTTT 58.030 29.630 14.61 0.00 0.00 2.83
120 121 9.807649 GTATGCTAGAAATTTCCATGATGTTTT 57.192 29.630 14.61 0.00 0.00 2.43
121 122 8.937634 ATGCTAGAAATTTCCATGATGTTTTC 57.062 30.769 14.61 0.00 0.00 2.29
122 123 8.125978 TGCTAGAAATTTCCATGATGTTTTCT 57.874 30.769 14.61 14.06 37.26 2.52
123 124 8.587608 TGCTAGAAATTTCCATGATGTTTTCTT 58.412 29.630 14.61 0.00 35.62 2.52
124 125 9.080915 GCTAGAAATTTCCATGATGTTTTCTTC 57.919 33.333 14.61 2.24 35.62 2.87
130 131 7.966246 TTTCCATGATGTTTTCTTCATTTGG 57.034 32.000 0.00 0.00 40.95 3.28
131 132 6.040209 TCCATGATGTTTTCTTCATTTGGG 57.960 37.500 0.00 0.00 40.95 4.12
132 133 5.543405 TCCATGATGTTTTCTTCATTTGGGT 59.457 36.000 0.00 0.00 40.95 4.51
133 134 6.043012 TCCATGATGTTTTCTTCATTTGGGTT 59.957 34.615 0.00 0.00 40.95 4.11
134 135 7.234371 TCCATGATGTTTTCTTCATTTGGGTTA 59.766 33.333 0.00 0.00 40.95 2.85
135 136 8.042515 CCATGATGTTTTCTTCATTTGGGTTAT 58.957 33.333 0.00 0.00 40.95 1.89
136 137 9.439500 CATGATGTTTTCTTCATTTGGGTTATT 57.561 29.630 0.00 0.00 40.95 1.40
138 139 9.844257 TGATGTTTTCTTCATTTGGGTTATTTT 57.156 25.926 0.00 0.00 0.00 1.82
160 161 9.733556 ATTTTTAAAATTTATTCCTGTCCACCC 57.266 29.630 0.55 0.00 0.00 4.61
161 162 7.857404 TTTAAAATTTATTCCTGTCCACCCA 57.143 32.000 0.00 0.00 0.00 4.51
162 163 8.442660 TTTAAAATTTATTCCTGTCCACCCAT 57.557 30.769 0.00 0.00 0.00 4.00
163 164 5.937975 AAATTTATTCCTGTCCACCCATG 57.062 39.130 0.00 0.00 0.00 3.66
165 166 0.550914 TATTCCTGTCCACCCATGGC 59.449 55.000 6.09 0.00 46.80 4.40
166 167 1.508667 ATTCCTGTCCACCCATGGCA 61.509 55.000 6.09 0.00 46.80 4.92
167 168 1.724148 TTCCTGTCCACCCATGGCAA 61.724 55.000 6.09 0.00 46.80 4.52
168 169 1.000739 CCTGTCCACCCATGGCAAT 59.999 57.895 6.09 0.00 46.80 3.56
169 170 0.615544 CCTGTCCACCCATGGCAATT 60.616 55.000 6.09 0.00 46.80 2.32
170 171 1.269012 CTGTCCACCCATGGCAATTT 58.731 50.000 6.09 0.00 46.80 1.82
171 172 1.624813 CTGTCCACCCATGGCAATTTT 59.375 47.619 6.09 0.00 46.80 1.82
172 173 2.038820 CTGTCCACCCATGGCAATTTTT 59.961 45.455 6.09 0.00 46.80 1.94
173 174 2.224475 TGTCCACCCATGGCAATTTTTG 60.224 45.455 6.09 0.00 46.80 2.44
188 189 5.871539 CAATTTTTGCTGTGTTTGAAAGCT 58.128 33.333 0.00 0.00 37.82 3.74
189 190 4.925061 TTTTTGCTGTGTTTGAAAGCTG 57.075 36.364 0.00 0.00 37.82 4.24
190 191 3.865011 TTTGCTGTGTTTGAAAGCTGA 57.135 38.095 0.00 0.00 37.82 4.26
191 192 4.389890 TTTGCTGTGTTTGAAAGCTGAT 57.610 36.364 0.00 0.00 37.82 2.90
192 193 3.358707 TGCTGTGTTTGAAAGCTGATG 57.641 42.857 0.00 0.00 37.82 3.07
193 194 2.034939 TGCTGTGTTTGAAAGCTGATGG 59.965 45.455 0.00 0.00 37.82 3.51
194 195 2.669364 CTGTGTTTGAAAGCTGATGGC 58.331 47.619 0.00 0.00 42.19 4.40
195 196 2.030371 TGTGTTTGAAAGCTGATGGCA 58.970 42.857 0.00 0.00 44.79 4.92
196 197 2.629137 TGTGTTTGAAAGCTGATGGCAT 59.371 40.909 0.00 0.00 44.79 4.40
197 198 3.069872 TGTGTTTGAAAGCTGATGGCATT 59.930 39.130 0.00 0.00 44.79 3.56
198 199 4.060205 GTGTTTGAAAGCTGATGGCATTT 58.940 39.130 0.00 0.00 44.79 2.32
199 200 4.512571 GTGTTTGAAAGCTGATGGCATTTT 59.487 37.500 0.00 0.00 44.79 1.82
200 201 5.007921 GTGTTTGAAAGCTGATGGCATTTTT 59.992 36.000 0.00 0.81 44.79 1.94
267 268 4.694760 AAAAGAAGCAAAATCTTGGCCT 57.305 36.364 3.32 0.00 37.22 5.19
268 269 4.694760 AAAGAAGCAAAATCTTGGCCTT 57.305 36.364 3.32 0.00 37.22 4.35
269 270 4.694760 AAGAAGCAAAATCTTGGCCTTT 57.305 36.364 3.32 0.00 35.85 3.11
270 271 4.694760 AGAAGCAAAATCTTGGCCTTTT 57.305 36.364 3.32 0.00 32.76 2.27
271 272 5.039920 AGAAGCAAAATCTTGGCCTTTTT 57.960 34.783 3.32 2.42 32.76 1.94
272 273 5.059161 AGAAGCAAAATCTTGGCCTTTTTC 58.941 37.500 3.32 0.00 32.76 2.29
273 274 4.694760 AGCAAAATCTTGGCCTTTTTCT 57.305 36.364 3.32 0.00 32.76 2.52
274 275 5.039920 AGCAAAATCTTGGCCTTTTTCTT 57.960 34.783 3.32 0.00 32.76 2.52
275 276 5.059161 AGCAAAATCTTGGCCTTTTTCTTC 58.941 37.500 3.32 0.00 32.76 2.87
276 277 5.059161 GCAAAATCTTGGCCTTTTTCTTCT 58.941 37.500 3.32 0.00 32.76 2.85
277 278 6.041979 AGCAAAATCTTGGCCTTTTTCTTCTA 59.958 34.615 3.32 0.00 32.76 2.10
278 279 6.875726 GCAAAATCTTGGCCTTTTTCTTCTAT 59.124 34.615 3.32 0.00 32.76 1.98
279 280 7.063898 GCAAAATCTTGGCCTTTTTCTTCTATC 59.936 37.037 3.32 0.00 32.76 2.08
280 281 8.309656 CAAAATCTTGGCCTTTTTCTTCTATCT 58.690 33.333 3.32 0.00 0.00 1.98
281 282 8.427902 AAATCTTGGCCTTTTTCTTCTATCTT 57.572 30.769 3.32 0.00 0.00 2.40
282 283 8.427902 AATCTTGGCCTTTTTCTTCTATCTTT 57.572 30.769 3.32 0.00 0.00 2.52
283 284 7.839680 TCTTGGCCTTTTTCTTCTATCTTTT 57.160 32.000 3.32 0.00 0.00 2.27
284 285 7.661040 TCTTGGCCTTTTTCTTCTATCTTTTG 58.339 34.615 3.32 0.00 0.00 2.44
285 286 6.976934 TGGCCTTTTTCTTCTATCTTTTGT 57.023 33.333 3.32 0.00 0.00 2.83
286 287 7.360113 TGGCCTTTTTCTTCTATCTTTTGTT 57.640 32.000 3.32 0.00 0.00 2.83
287 288 8.472007 TGGCCTTTTTCTTCTATCTTTTGTTA 57.528 30.769 3.32 0.00 0.00 2.41
288 289 9.088987 TGGCCTTTTTCTTCTATCTTTTGTTAT 57.911 29.630 3.32 0.00 0.00 1.89
289 290 9.929180 GGCCTTTTTCTTCTATCTTTTGTTATT 57.071 29.630 0.00 0.00 0.00 1.40
319 320 7.751768 TTTTTGATTCACTTTTTGGGTTGTT 57.248 28.000 0.00 0.00 0.00 2.83
320 321 8.848474 TTTTTGATTCACTTTTTGGGTTGTTA 57.152 26.923 0.00 0.00 0.00 2.41
321 322 8.485976 TTTTGATTCACTTTTTGGGTTGTTAG 57.514 30.769 0.00 0.00 0.00 2.34
322 323 6.155475 TGATTCACTTTTTGGGTTGTTAGG 57.845 37.500 0.00 0.00 0.00 2.69
323 324 5.894393 TGATTCACTTTTTGGGTTGTTAGGA 59.106 36.000 0.00 0.00 0.00 2.94
324 325 5.845391 TTCACTTTTTGGGTTGTTAGGAG 57.155 39.130 0.00 0.00 0.00 3.69
325 326 3.634910 TCACTTTTTGGGTTGTTAGGAGC 59.365 43.478 0.00 0.00 0.00 4.70
326 327 3.636764 CACTTTTTGGGTTGTTAGGAGCT 59.363 43.478 0.00 0.00 0.00 4.09
327 328 3.636764 ACTTTTTGGGTTGTTAGGAGCTG 59.363 43.478 0.00 0.00 0.00 4.24
328 329 2.286365 TTTGGGTTGTTAGGAGCTGG 57.714 50.000 0.00 0.00 0.00 4.85
329 330 0.404040 TTGGGTTGTTAGGAGCTGGG 59.596 55.000 0.00 0.00 0.00 4.45
330 331 1.303282 GGGTTGTTAGGAGCTGGGG 59.697 63.158 0.00 0.00 0.00 4.96
331 332 1.205460 GGGTTGTTAGGAGCTGGGGA 61.205 60.000 0.00 0.00 0.00 4.81
332 333 0.253327 GGTTGTTAGGAGCTGGGGAG 59.747 60.000 0.00 0.00 0.00 4.30
333 334 0.253327 GTTGTTAGGAGCTGGGGAGG 59.747 60.000 0.00 0.00 0.00 4.30
334 335 0.178873 TTGTTAGGAGCTGGGGAGGT 60.179 55.000 0.00 0.00 0.00 3.85
335 336 0.714180 TGTTAGGAGCTGGGGAGGTA 59.286 55.000 0.00 0.00 0.00 3.08
336 337 1.294068 TGTTAGGAGCTGGGGAGGTAT 59.706 52.381 0.00 0.00 0.00 2.73
337 338 2.293586 TGTTAGGAGCTGGGGAGGTATT 60.294 50.000 0.00 0.00 0.00 1.89
338 339 2.369203 GTTAGGAGCTGGGGAGGTATTC 59.631 54.545 0.00 0.00 0.00 1.75
339 340 0.760945 AGGAGCTGGGGAGGTATTCG 60.761 60.000 0.00 0.00 0.00 3.34
340 341 1.069935 GAGCTGGGGAGGTATTCGC 59.930 63.158 0.00 0.00 37.99 4.70
341 342 1.686325 GAGCTGGGGAGGTATTCGCA 61.686 60.000 0.00 0.00 40.35 5.10
342 343 1.523938 GCTGGGGAGGTATTCGCAC 60.524 63.158 0.00 0.00 40.35 5.34
343 344 1.146263 CTGGGGAGGTATTCGCACC 59.854 63.158 0.00 0.00 40.35 5.01
349 350 4.857251 GGTATTCGCACCTGGAGG 57.143 61.111 0.00 0.00 42.17 4.30
350 351 1.523938 GGTATTCGCACCTGGAGGC 60.524 63.158 0.00 2.55 39.32 4.70
351 352 1.522569 GTATTCGCACCTGGAGGCT 59.477 57.895 0.00 0.00 39.32 4.58
352 353 0.107654 GTATTCGCACCTGGAGGCTT 60.108 55.000 0.00 0.00 39.32 4.35
353 354 0.178068 TATTCGCACCTGGAGGCTTC 59.822 55.000 0.00 0.00 39.32 3.86
354 355 1.557269 ATTCGCACCTGGAGGCTTCT 61.557 55.000 0.00 0.00 39.32 2.85
355 356 2.125350 CGCACCTGGAGGCTTCTC 60.125 66.667 0.00 0.00 39.32 2.87
364 365 3.715015 AGGCTTCTCCTCCCGAAC 58.285 61.111 0.00 0.00 43.20 3.95
365 366 1.079438 AGGCTTCTCCTCCCGAACT 59.921 57.895 0.00 0.00 43.20 3.01
366 367 0.335361 AGGCTTCTCCTCCCGAACTA 59.665 55.000 0.00 0.00 43.20 2.24
367 368 1.192428 GGCTTCTCCTCCCGAACTAA 58.808 55.000 0.00 0.00 0.00 2.24
368 369 1.553704 GGCTTCTCCTCCCGAACTAAA 59.446 52.381 0.00 0.00 0.00 1.85
369 370 2.027469 GGCTTCTCCTCCCGAACTAAAA 60.027 50.000 0.00 0.00 0.00 1.52
370 371 3.370633 GGCTTCTCCTCCCGAACTAAAAT 60.371 47.826 0.00 0.00 0.00 1.82
371 372 3.872182 GCTTCTCCTCCCGAACTAAAATC 59.128 47.826 0.00 0.00 0.00 2.17
372 373 3.795623 TCTCCTCCCGAACTAAAATCG 57.204 47.619 0.00 0.00 39.92 3.34
373 374 3.094572 TCTCCTCCCGAACTAAAATCGT 58.905 45.455 0.00 0.00 38.60 3.73
374 375 3.512724 TCTCCTCCCGAACTAAAATCGTT 59.487 43.478 0.00 0.00 38.60 3.85
375 376 3.853475 TCCTCCCGAACTAAAATCGTTC 58.147 45.455 0.00 0.00 38.60 3.95
383 384 5.541098 GAACTAAAATCGTTCGTGGGATT 57.459 39.130 0.00 0.00 34.48 3.01
384 385 4.939509 ACTAAAATCGTTCGTGGGATTG 57.060 40.909 0.00 0.00 33.40 2.67
385 386 4.320870 ACTAAAATCGTTCGTGGGATTGT 58.679 39.130 0.00 0.00 33.40 2.71
386 387 5.481105 ACTAAAATCGTTCGTGGGATTGTA 58.519 37.500 0.00 0.00 33.40 2.41
387 388 6.110707 ACTAAAATCGTTCGTGGGATTGTAT 58.889 36.000 0.00 0.00 33.40 2.29
388 389 5.479716 AAAATCGTTCGTGGGATTGTATC 57.520 39.130 0.00 0.00 33.40 2.24
389 390 2.197792 TCGTTCGTGGGATTGTATCG 57.802 50.000 0.00 0.00 0.00 2.92
390 391 1.473677 TCGTTCGTGGGATTGTATCGT 59.526 47.619 0.00 0.00 0.00 3.73
391 392 2.682352 TCGTTCGTGGGATTGTATCGTA 59.318 45.455 0.00 0.00 0.00 3.43
392 393 2.785477 CGTTCGTGGGATTGTATCGTAC 59.215 50.000 0.00 0.00 0.00 3.67
393 394 3.118542 GTTCGTGGGATTGTATCGTACC 58.881 50.000 0.00 0.00 0.00 3.34
394 395 1.334556 TCGTGGGATTGTATCGTACCG 59.665 52.381 0.00 0.00 0.00 4.02
395 396 1.334556 CGTGGGATTGTATCGTACCGA 59.665 52.381 0.00 0.00 41.13 4.69
396 397 2.223548 CGTGGGATTGTATCGTACCGAA 60.224 50.000 0.00 0.00 39.99 4.30
397 398 3.118542 GTGGGATTGTATCGTACCGAAC 58.881 50.000 0.00 0.00 39.99 3.95
398 399 2.101249 TGGGATTGTATCGTACCGAACC 59.899 50.000 0.00 0.00 39.99 3.62
399 400 2.363359 GGGATTGTATCGTACCGAACCT 59.637 50.000 0.00 0.00 39.99 3.50
400 401 3.551659 GGGATTGTATCGTACCGAACCTC 60.552 52.174 0.00 0.00 39.99 3.85
401 402 3.317430 GGATTGTATCGTACCGAACCTCT 59.683 47.826 0.00 0.00 39.99 3.69
402 403 4.202090 GGATTGTATCGTACCGAACCTCTT 60.202 45.833 0.00 0.00 39.99 2.85
403 404 3.770263 TGTATCGTACCGAACCTCTTG 57.230 47.619 0.00 0.00 39.99 3.02
404 405 2.424601 TGTATCGTACCGAACCTCTTGG 59.575 50.000 0.00 0.00 39.99 3.61
413 414 3.161557 ACCTCTTGGTCTGGCACC 58.838 61.111 0.00 0.00 44.78 5.01
414 415 1.462238 ACCTCTTGGTCTGGCACCT 60.462 57.895 0.00 0.00 44.78 4.00
415 416 1.002868 CCTCTTGGTCTGGCACCTG 60.003 63.158 0.00 0.00 46.98 4.00
416 417 1.757306 CTCTTGGTCTGGCACCTGT 59.243 57.895 0.00 0.00 46.98 4.00
417 418 0.321122 CTCTTGGTCTGGCACCTGTC 60.321 60.000 0.00 0.00 46.98 3.51
418 419 1.302832 CTTGGTCTGGCACCTGTCC 60.303 63.158 3.45 3.45 46.98 4.02
419 420 2.055689 CTTGGTCTGGCACCTGTCCA 62.056 60.000 8.14 8.14 46.98 4.02
429 430 3.691342 CCTGTCCAGGCCGAACGA 61.691 66.667 0.00 0.00 42.44 3.85
430 431 2.579201 CTGTCCAGGCCGAACGAT 59.421 61.111 0.00 0.00 0.00 3.73
431 432 1.519455 CTGTCCAGGCCGAACGATC 60.519 63.158 0.00 0.00 0.00 3.69
445 446 3.291699 CGATCGACCGATATCGTGG 57.708 57.895 22.81 11.59 42.80 4.94
446 447 0.516001 CGATCGACCGATATCGTGGT 59.484 55.000 22.81 14.70 42.80 4.16
453 454 3.175109 ACCGATATCGTGGTCCTTTTC 57.825 47.619 22.81 0.00 37.74 2.29
454 455 2.764572 ACCGATATCGTGGTCCTTTTCT 59.235 45.455 22.81 0.00 37.74 2.52
455 456 3.197116 ACCGATATCGTGGTCCTTTTCTT 59.803 43.478 22.81 0.00 37.74 2.52
456 457 4.189231 CCGATATCGTGGTCCTTTTCTTT 58.811 43.478 22.81 0.00 37.74 2.52
457 458 4.634443 CCGATATCGTGGTCCTTTTCTTTT 59.366 41.667 22.81 0.00 37.74 2.27
458 459 5.220605 CCGATATCGTGGTCCTTTTCTTTTC 60.221 44.000 22.81 0.00 37.74 2.29
459 460 5.350365 CGATATCGTGGTCCTTTTCTTTTCA 59.650 40.000 17.06 0.00 34.11 2.69
460 461 6.128391 CGATATCGTGGTCCTTTTCTTTTCAA 60.128 38.462 17.06 0.00 34.11 2.69
461 462 4.893424 TCGTGGTCCTTTTCTTTTCAAG 57.107 40.909 0.00 0.00 0.00 3.02
462 463 4.266714 TCGTGGTCCTTTTCTTTTCAAGT 58.733 39.130 0.00 0.00 0.00 3.16
463 464 4.703093 TCGTGGTCCTTTTCTTTTCAAGTT 59.297 37.500 0.00 0.00 0.00 2.66
464 465 4.798387 CGTGGTCCTTTTCTTTTCAAGTTG 59.202 41.667 0.00 0.00 0.00 3.16
465 466 5.109210 GTGGTCCTTTTCTTTTCAAGTTGG 58.891 41.667 2.34 0.00 0.00 3.77
466 467 5.020132 TGGTCCTTTTCTTTTCAAGTTGGA 58.980 37.500 2.34 0.00 0.00 3.53
467 468 5.482175 TGGTCCTTTTCTTTTCAAGTTGGAA 59.518 36.000 2.34 0.00 0.00 3.53
468 469 6.042777 GGTCCTTTTCTTTTCAAGTTGGAAG 58.957 40.000 2.34 8.09 0.00 3.46
469 470 6.351033 GGTCCTTTTCTTTTCAAGTTGGAAGT 60.351 38.462 15.11 0.00 0.00 3.01
470 471 6.531594 GTCCTTTTCTTTTCAAGTTGGAAGTG 59.468 38.462 15.11 6.33 0.00 3.16
471 472 5.812127 CCTTTTCTTTTCAAGTTGGAAGTGG 59.188 40.000 15.11 11.19 0.00 4.00
472 473 5.337578 TTTCTTTTCAAGTTGGAAGTGGG 57.662 39.130 15.11 2.53 0.00 4.61
473 474 3.295973 TCTTTTCAAGTTGGAAGTGGGG 58.704 45.455 15.11 0.68 0.00 4.96
474 475 2.838637 TTTCAAGTTGGAAGTGGGGT 57.161 45.000 2.34 0.00 0.00 4.95
475 476 3.955524 TTTCAAGTTGGAAGTGGGGTA 57.044 42.857 2.34 0.00 0.00 3.69
476 477 3.955524 TTCAAGTTGGAAGTGGGGTAA 57.044 42.857 2.34 0.00 0.00 2.85
477 478 3.217681 TCAAGTTGGAAGTGGGGTAAC 57.782 47.619 2.34 0.00 0.00 2.50
478 479 2.510382 TCAAGTTGGAAGTGGGGTAACA 59.490 45.455 2.34 0.00 39.74 2.41
479 480 3.139397 TCAAGTTGGAAGTGGGGTAACAT 59.861 43.478 2.34 0.00 39.74 2.71
480 481 3.895041 CAAGTTGGAAGTGGGGTAACATT 59.105 43.478 0.00 0.00 39.74 2.71
481 482 5.074115 CAAGTTGGAAGTGGGGTAACATTA 58.926 41.667 0.00 0.00 39.74 1.90
482 483 5.530176 AGTTGGAAGTGGGGTAACATTAT 57.470 39.130 0.00 0.00 39.74 1.28
483 484 5.899278 AGTTGGAAGTGGGGTAACATTATT 58.101 37.500 0.00 0.00 39.74 1.40
484 485 6.319715 AGTTGGAAGTGGGGTAACATTATTT 58.680 36.000 0.00 0.00 39.74 1.40
485 486 6.785466 AGTTGGAAGTGGGGTAACATTATTTT 59.215 34.615 0.00 0.00 39.74 1.82
486 487 7.291416 AGTTGGAAGTGGGGTAACATTATTTTT 59.709 33.333 0.00 0.00 39.74 1.94
487 488 7.234661 TGGAAGTGGGGTAACATTATTTTTC 57.765 36.000 0.00 0.00 39.74 2.29
488 489 7.013834 TGGAAGTGGGGTAACATTATTTTTCT 58.986 34.615 0.00 0.00 39.74 2.52
489 490 7.511028 TGGAAGTGGGGTAACATTATTTTTCTT 59.489 33.333 0.00 0.00 39.74 2.52
490 491 8.372459 GGAAGTGGGGTAACATTATTTTTCTTT 58.628 33.333 0.00 0.00 39.74 2.52
493 494 8.517056 AGTGGGGTAACATTATTTTTCTTTACG 58.483 33.333 0.00 0.00 39.74 3.18
494 495 7.756272 GTGGGGTAACATTATTTTTCTTTACGG 59.244 37.037 0.00 0.00 39.74 4.02
495 496 7.668886 TGGGGTAACATTATTTTTCTTTACGGA 59.331 33.333 0.00 0.00 39.74 4.69
496 497 8.522003 GGGGTAACATTATTTTTCTTTACGGAA 58.478 33.333 0.00 0.00 39.74 4.30
509 510 9.880157 TTTTCTTTACGGAATACTATGCTTACT 57.120 29.630 0.00 0.00 0.00 2.24
510 511 9.880157 TTTCTTTACGGAATACTATGCTTACTT 57.120 29.630 0.00 0.00 0.00 2.24
511 512 9.880157 TTCTTTACGGAATACTATGCTTACTTT 57.120 29.630 0.00 0.00 0.00 2.66
512 513 9.880157 TCTTTACGGAATACTATGCTTACTTTT 57.120 29.630 0.00 0.00 0.00 2.27
517 518 9.826574 ACGGAATACTATGCTTACTTTTATGAA 57.173 29.630 0.00 0.00 0.00 2.57
539 540 8.506168 TGAAAACATATCCAGTTCATAGGTTC 57.494 34.615 0.00 0.00 31.25 3.62
540 541 7.556275 TGAAAACATATCCAGTTCATAGGTTCC 59.444 37.037 0.00 0.00 31.25 3.62
541 542 6.831664 AACATATCCAGTTCATAGGTTCCT 57.168 37.500 0.00 0.00 27.07 3.36
542 543 6.831664 ACATATCCAGTTCATAGGTTCCTT 57.168 37.500 0.00 0.00 0.00 3.36
543 544 7.931015 ACATATCCAGTTCATAGGTTCCTTA 57.069 36.000 0.00 0.00 0.00 2.69
544 545 7.736893 ACATATCCAGTTCATAGGTTCCTTAC 58.263 38.462 0.00 0.00 0.00 2.34
596 597 0.036294 GGGAGTCCGTGGGAGAAAAG 60.036 60.000 2.26 0.00 29.39 2.27
604 605 2.095059 CCGTGGGAGAAAAGCATTTGAG 60.095 50.000 0.00 0.00 39.02 3.02
608 609 2.159462 GGGAGAAAAGCATTTGAGCTCG 60.159 50.000 9.64 0.00 45.89 5.03
610 611 2.157738 AGAAAAGCATTTGAGCTCGCT 58.842 42.857 9.64 8.67 45.89 4.93
617 618 2.782163 CATTTGAGCTCGCTGTTCATG 58.218 47.619 9.64 0.00 35.85 3.07
618 619 1.159285 TTTGAGCTCGCTGTTCATGG 58.841 50.000 9.64 0.00 35.85 3.66
637 638 6.009589 TCATGGAAAATTACCAGAGCAAAGA 58.990 36.000 9.57 0.00 40.89 2.52
661 662 6.531923 ACTGGTCATCATCTCTATCAAATGG 58.468 40.000 0.00 0.00 0.00 3.16
692 693 6.357367 GTCCAACACAAGACCCATATATTCT 58.643 40.000 0.00 0.00 0.00 2.40
703 704 5.869579 ACCCATATATTCTGATGGACACAC 58.130 41.667 4.10 0.00 44.72 3.82
705 706 6.169094 CCCATATATTCTGATGGACACACTC 58.831 44.000 4.10 0.00 44.72 3.51
706 707 6.013898 CCCATATATTCTGATGGACACACTCT 60.014 42.308 4.10 0.00 44.72 3.24
708 709 8.249638 CCATATATTCTGATGGACACACTCTAG 58.750 40.741 0.00 0.00 44.72 2.43
711 712 2.106566 CTGATGGACACACTCTAGGCT 58.893 52.381 0.00 0.00 0.00 4.58
740 744 2.223525 CGAGTACCTTGCAGGCTAGTAC 60.224 54.545 5.95 5.95 39.63 2.73
754 758 2.350804 GCTAGTACATCGAGTCACGTGA 59.649 50.000 15.76 15.76 43.13 4.35
765 771 1.623359 GTCACGTGACTCATGAGCTC 58.377 55.000 35.51 17.97 41.65 4.09
785 791 0.946221 GGGAGCTCGTGTTCACTGTG 60.946 60.000 7.83 0.17 0.00 3.66
814 820 6.138761 CAGTGTTGTATTGTCTCTTCAAAGC 58.861 40.000 0.00 0.00 0.00 3.51
822 845 1.867233 GTCTCTTCAAAGCGCTGAACA 59.133 47.619 12.58 0.00 32.00 3.18
826 849 3.398406 TCTTCAAAGCGCTGAACATGTA 58.602 40.909 12.58 0.00 32.00 2.29
961 1382 2.332063 ACACTCACACCAAAGACCAG 57.668 50.000 0.00 0.00 0.00 4.00
965 1479 2.113139 ACACCAAAGACCAGCCCG 59.887 61.111 0.00 0.00 0.00 6.13
978 1492 3.525545 GCCCGGTAGACGTCCCTC 61.526 72.222 13.01 2.74 42.24 4.30
982 1496 2.799371 GGTAGACGTCCCTCAGCG 59.201 66.667 13.01 0.00 0.00 5.18
995 1509 1.670087 CCTCAGCGAAGAAAGAAGCGA 60.670 52.381 0.00 0.00 34.34 4.93
1156 1670 3.564262 CTCATCAAGCAGAAGGCCA 57.436 52.632 5.01 0.00 46.50 5.36
1368 1891 4.517815 GGCGGGCGAACGATGGTA 62.518 66.667 3.29 0.00 35.47 3.25
1428 1951 2.920645 CGAGGATGATCCCCGGACG 61.921 68.421 7.57 3.27 37.19 4.79
1431 1954 0.826672 AGGATGATCCCCGGACGTAC 60.827 60.000 8.08 0.00 37.19 3.67
1487 2010 3.871485 ACTAGTGACTCGTCTTCGGTAT 58.129 45.455 0.00 0.00 37.69 2.73
1491 2014 3.119919 AGTGACTCGTCTTCGGTATGTTC 60.120 47.826 0.00 0.00 37.69 3.18
1511 2043 0.790207 CACCTCACGTGTGTACATGC 59.210 55.000 16.51 0.00 37.73 4.06
1525 2057 4.628333 GTGTACATGCGTACTTGTATTGGT 59.372 41.667 0.00 0.00 46.88 3.67
1530 2062 5.522460 ACATGCGTACTTGTATTGGTGTATC 59.478 40.000 0.00 0.00 32.75 2.24
1555 2091 3.740321 TGTATTTGTGTCCGTACGGTTTC 59.260 43.478 32.16 22.65 36.47 2.78
1567 2103 1.652012 CGGTTTCGTGCCATTGTGT 59.348 52.632 0.00 0.00 0.00 3.72
1638 2211 7.496591 TGGTTCGCTAAATATAAATTCGGAAGT 59.503 33.333 0.00 0.00 0.00 3.01
1640 2213 9.155053 GTTCGCTAAATATAAATTCGGAAGTTG 57.845 33.333 13.18 0.00 0.00 3.16
1641 2214 7.349711 TCGCTAAATATAAATTCGGAAGTTGC 58.650 34.615 13.18 5.58 0.00 4.17
1647 2221 1.981256 AATTCGGAAGTTGCCTGTGT 58.019 45.000 0.00 0.00 0.00 3.72
1690 2290 8.621286 CGGCCTGTTTTTATCTATCAAGTAAAT 58.379 33.333 0.00 0.00 0.00 1.40
1705 2305 7.870509 TCAAGTAAATATTTGCTGATGCTCT 57.129 32.000 18.02 0.00 40.48 4.09
1707 2307 6.069684 AGTAAATATTTGCTGATGCTCTGC 57.930 37.500 16.81 7.69 41.04 4.26
1714 2314 0.033781 GCTGATGCTCTGCCTCCTAG 59.966 60.000 4.46 0.00 35.62 3.02
1750 2350 3.928992 TCTGAGATGCTTTGACGATTGAC 59.071 43.478 0.00 0.00 0.00 3.18
1768 2370 3.838120 TGACTGTTCTCATCTTACTGCG 58.162 45.455 0.00 0.00 0.00 5.18
1780 2382 0.787787 TTACTGCGTGCGATGTTGAC 59.212 50.000 0.00 0.00 0.00 3.18
1784 2386 3.071459 GCGTGCGATGTTGACGAGG 62.071 63.158 0.00 0.00 35.05 4.63
1840 2442 4.179926 TCTCTTCTTGAGATGTTCACCG 57.820 45.455 0.00 0.00 46.03 4.94
1879 2481 1.518325 CGGAATACAAGCCACACACA 58.482 50.000 0.00 0.00 0.00 3.72
1880 2482 1.196808 CGGAATACAAGCCACACACAC 59.803 52.381 0.00 0.00 0.00 3.82
1881 2483 2.226330 GGAATACAAGCCACACACACA 58.774 47.619 0.00 0.00 0.00 3.72
1919 2521 3.990318 ACAGCTGCCTAAGAACAAAAC 57.010 42.857 15.27 0.00 0.00 2.43
1920 2522 3.555966 ACAGCTGCCTAAGAACAAAACT 58.444 40.909 15.27 0.00 0.00 2.66
1941 2543 7.849322 AACTAAATAACACCCACCAGAAAAT 57.151 32.000 0.00 0.00 0.00 1.82
1944 2546 9.369672 ACTAAATAACACCCACCAGAAAATAAA 57.630 29.630 0.00 0.00 0.00 1.40
1949 2551 7.604657 AACACCCACCAGAAAATAAATTACA 57.395 32.000 0.00 0.00 0.00 2.41
1950 2552 7.227049 ACACCCACCAGAAAATAAATTACAG 57.773 36.000 0.00 0.00 0.00 2.74
1951 2553 6.210584 ACACCCACCAGAAAATAAATTACAGG 59.789 38.462 0.00 0.00 0.00 4.00
1952 2554 6.210584 CACCCACCAGAAAATAAATTACAGGT 59.789 38.462 0.00 0.00 0.00 4.00
1953 2555 6.785466 ACCCACCAGAAAATAAATTACAGGTT 59.215 34.615 0.00 0.00 0.00 3.50
1954 2556 7.291416 ACCCACCAGAAAATAAATTACAGGTTT 59.709 33.333 0.00 0.00 0.00 3.27
1955 2557 8.154203 CCCACCAGAAAATAAATTACAGGTTTT 58.846 33.333 0.00 0.00 0.00 2.43
1956 2558 9.554395 CCACCAGAAAATAAATTACAGGTTTTT 57.446 29.630 0.00 0.00 0.00 1.94
2025 2630 4.344865 CCCCCACCTCCAACACCG 62.345 72.222 0.00 0.00 0.00 4.94
2041 2646 4.944372 CGCCGCCACCGTAGATCC 62.944 72.222 0.00 0.00 0.00 3.36
2045 2650 3.537874 GCCACCGTAGATCCCGCT 61.538 66.667 0.00 0.00 0.00 5.52
2051 2656 3.917760 GTAGATCCCGCTGCCGCT 61.918 66.667 0.00 0.00 0.00 5.52
2052 2657 2.203437 TAGATCCCGCTGCCGCTA 60.203 61.111 0.00 0.00 0.00 4.26
2053 2658 1.606601 TAGATCCCGCTGCCGCTAT 60.607 57.895 0.00 0.00 0.00 2.97
2078 2692 1.078497 CCACACAAGCCGCATCCTA 60.078 57.895 0.00 0.00 0.00 2.94
2104 2718 2.685380 CGCACCCTCTTCCCCTCT 60.685 66.667 0.00 0.00 0.00 3.69
2106 2720 2.371259 GCACCCTCTTCCCCTCTCC 61.371 68.421 0.00 0.00 0.00 3.71
2107 2721 2.060980 CACCCTCTTCCCCTCTCCG 61.061 68.421 0.00 0.00 0.00 4.63
2108 2722 2.246874 ACCCTCTTCCCCTCTCCGA 61.247 63.158 0.00 0.00 0.00 4.55
2111 2725 0.187361 CCTCTTCCCCTCTCCGAGAT 59.813 60.000 0.00 0.00 0.00 2.75
2112 2726 1.616159 CTCTTCCCCTCTCCGAGATC 58.384 60.000 0.00 0.00 0.00 2.75
2152 2768 1.422024 CCTCCTCCGAGATCTACTGGA 59.578 57.143 9.72 9.72 38.52 3.86
2178 2794 3.181440 TGGATGAAAGACAAGCAGAGGTT 60.181 43.478 0.00 0.00 0.00 3.50
2193 2809 2.095461 GAGGTTCAAAATGCCTCTCCC 58.905 52.381 0.00 0.00 43.93 4.30
2199 2815 0.323725 AAAATGCCTCTCCCGCATGT 60.324 50.000 0.00 0.00 46.09 3.21
2213 2829 1.331756 CGCATGTCTACCAAGCATTCC 59.668 52.381 0.00 0.00 37.63 3.01
2222 2838 3.211963 AAGCATTCCCGCGGATGC 61.212 61.111 33.22 33.22 36.89 3.91
2225 2841 3.957535 CATTCCCGCGGATGCTGC 61.958 66.667 30.73 0.00 39.65 5.25
2266 2882 1.144936 GGCCATTCAGAGGGAGACG 59.855 63.158 0.00 0.00 0.00 4.18
2317 2933 3.753070 GATCCGTGACGACGCCCTC 62.753 68.421 6.54 0.00 44.68 4.30
2321 2937 3.063084 GTGACGACGCCCTCTCCT 61.063 66.667 0.00 0.00 0.00 3.69
2338 2954 4.954118 TGGTCCCTGTGCTCCCGT 62.954 66.667 0.00 0.00 0.00 5.28
2355 2971 2.119611 TGAGTGGAGGGAAGCGGA 59.880 61.111 0.00 0.00 0.00 5.54
2356 2972 2.283529 TGAGTGGAGGGAAGCGGAC 61.284 63.158 0.00 0.00 0.00 4.79
2364 2992 1.208165 AGGGAAGCGGACCTGGATTT 61.208 55.000 0.00 0.00 35.30 2.17
2366 2994 1.475213 GGGAAGCGGACCTGGATTTAG 60.475 57.143 0.00 0.00 0.00 1.85
2388 3016 0.392998 CCACAGTCCCACAGGTATGC 60.393 60.000 0.00 0.00 0.00 3.14
2401 3029 2.612672 CAGGTATGCTCAGATGTGCAAG 59.387 50.000 12.94 0.00 45.82 4.01
2406 3034 1.703438 GCTCAGATGTGCAAGGCTCG 61.703 60.000 0.00 0.00 34.92 5.03
2435 3063 3.118261 TCGGGAATTGCTGAATCTAGCTT 60.118 43.478 5.94 0.00 44.01 3.74
2437 3065 4.497006 CGGGAATTGCTGAATCTAGCTTTG 60.497 45.833 0.00 0.00 44.01 2.77
2438 3066 4.400567 GGGAATTGCTGAATCTAGCTTTGT 59.599 41.667 0.00 0.00 44.01 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.952278 TCGTAGCATAAATGTCTTGGTATTTTT 58.048 29.630 0.00 0.00 0.00 1.94
42 43 8.500753 TCGTAGCATAAATGTCTTGGTATTTT 57.499 30.769 0.00 0.00 0.00 1.82
43 44 8.500753 TTCGTAGCATAAATGTCTTGGTATTT 57.499 30.769 0.00 0.00 0.00 1.40
44 45 8.677148 ATTCGTAGCATAAATGTCTTGGTATT 57.323 30.769 0.00 0.00 0.00 1.89
45 46 8.677148 AATTCGTAGCATAAATGTCTTGGTAT 57.323 30.769 0.00 0.00 0.00 2.73
46 47 8.394877 CAAATTCGTAGCATAAATGTCTTGGTA 58.605 33.333 0.00 0.00 0.00 3.25
47 48 7.120579 TCAAATTCGTAGCATAAATGTCTTGGT 59.879 33.333 0.00 0.00 0.00 3.67
48 49 7.429340 GTCAAATTCGTAGCATAAATGTCTTGG 59.571 37.037 0.00 0.00 0.00 3.61
49 50 7.962373 TGTCAAATTCGTAGCATAAATGTCTTG 59.038 33.333 0.00 0.00 0.00 3.02
50 51 8.039603 TGTCAAATTCGTAGCATAAATGTCTT 57.960 30.769 0.00 0.00 0.00 3.01
51 52 7.609760 TGTCAAATTCGTAGCATAAATGTCT 57.390 32.000 0.00 0.00 0.00 3.41
52 53 8.736742 CAATGTCAAATTCGTAGCATAAATGTC 58.263 33.333 0.00 0.00 0.00 3.06
53 54 7.220683 GCAATGTCAAATTCGTAGCATAAATGT 59.779 33.333 0.00 0.00 0.00 2.71
54 55 7.220491 TGCAATGTCAAATTCGTAGCATAAATG 59.780 33.333 0.00 0.00 0.00 2.32
55 56 7.257003 TGCAATGTCAAATTCGTAGCATAAAT 58.743 30.769 0.00 0.00 0.00 1.40
56 57 6.616017 TGCAATGTCAAATTCGTAGCATAAA 58.384 32.000 0.00 0.00 0.00 1.40
57 58 6.188400 TGCAATGTCAAATTCGTAGCATAA 57.812 33.333 0.00 0.00 0.00 1.90
58 59 5.809719 TGCAATGTCAAATTCGTAGCATA 57.190 34.783 0.00 0.00 0.00 3.14
59 60 4.700268 TGCAATGTCAAATTCGTAGCAT 57.300 36.364 0.00 0.00 0.00 3.79
60 61 4.495911 TTGCAATGTCAAATTCGTAGCA 57.504 36.364 0.00 0.00 0.00 3.49
85 86 9.995003 TGGAAATTTCTAGCATACAAACAAAAT 57.005 25.926 17.42 0.00 0.00 1.82
86 87 9.995003 ATGGAAATTTCTAGCATACAAACAAAA 57.005 25.926 17.42 0.00 0.00 2.44
87 88 9.421806 CATGGAAATTTCTAGCATACAAACAAA 57.578 29.630 17.42 0.00 0.00 2.83
88 89 8.801299 TCATGGAAATTTCTAGCATACAAACAA 58.199 29.630 17.42 0.00 0.00 2.83
89 90 8.347004 TCATGGAAATTTCTAGCATACAAACA 57.653 30.769 17.42 3.38 0.00 2.83
90 91 9.241317 CATCATGGAAATTTCTAGCATACAAAC 57.759 33.333 17.42 0.00 0.00 2.93
91 92 8.970020 ACATCATGGAAATTTCTAGCATACAAA 58.030 29.630 17.42 0.16 0.00 2.83
92 93 8.523915 ACATCATGGAAATTTCTAGCATACAA 57.476 30.769 17.42 3.63 0.00 2.41
93 94 8.523915 AACATCATGGAAATTTCTAGCATACA 57.476 30.769 17.42 5.90 0.00 2.29
94 95 9.807649 AAAACATCATGGAAATTTCTAGCATAC 57.192 29.630 17.42 0.22 0.00 2.39
96 97 8.755977 AGAAAACATCATGGAAATTTCTAGCAT 58.244 29.630 17.42 9.85 35.87 3.79
97 98 8.125978 AGAAAACATCATGGAAATTTCTAGCA 57.874 30.769 17.42 7.97 35.87 3.49
98 99 8.992835 AAGAAAACATCATGGAAATTTCTAGC 57.007 30.769 17.42 2.32 36.43 3.42
104 105 9.005777 CCAAATGAAGAAAACATCATGGAAATT 57.994 29.630 0.00 0.00 37.08 1.82
105 106 7.608761 CCCAAATGAAGAAAACATCATGGAAAT 59.391 33.333 0.00 0.00 37.08 2.17
106 107 6.935771 CCCAAATGAAGAAAACATCATGGAAA 59.064 34.615 0.00 0.00 37.08 3.13
107 108 6.043012 ACCCAAATGAAGAAAACATCATGGAA 59.957 34.615 0.00 0.00 37.08 3.53
108 109 5.543405 ACCCAAATGAAGAAAACATCATGGA 59.457 36.000 0.00 0.00 37.08 3.41
109 110 5.797051 ACCCAAATGAAGAAAACATCATGG 58.203 37.500 0.00 0.00 36.44 3.66
110 111 9.439500 AATAACCCAAATGAAGAAAACATCATG 57.561 29.630 0.00 0.00 36.44 3.07
112 113 9.844257 AAAATAACCCAAATGAAGAAAACATCA 57.156 25.926 0.00 0.00 0.00 3.07
134 135 9.733556 GGGTGGACAGGAATAAATTTTAAAAAT 57.266 29.630 4.44 0.00 0.00 1.82
135 136 8.714906 TGGGTGGACAGGAATAAATTTTAAAAA 58.285 29.630 4.44 0.00 0.00 1.94
136 137 8.263854 TGGGTGGACAGGAATAAATTTTAAAA 57.736 30.769 2.51 2.51 0.00 1.52
137 138 7.857404 TGGGTGGACAGGAATAAATTTTAAA 57.143 32.000 0.00 0.00 0.00 1.52
138 139 7.846066 CATGGGTGGACAGGAATAAATTTTAA 58.154 34.615 0.00 0.00 0.00 1.52
139 140 7.416964 CATGGGTGGACAGGAATAAATTTTA 57.583 36.000 0.00 0.00 0.00 1.52
140 141 6.298441 CATGGGTGGACAGGAATAAATTTT 57.702 37.500 0.00 0.00 0.00 1.82
141 142 5.937975 CATGGGTGGACAGGAATAAATTT 57.062 39.130 0.00 0.00 0.00 1.82
165 166 5.735427 CAGCTTTCAAACACAGCAAAAATTG 59.265 36.000 0.00 0.00 35.88 2.32
166 167 5.642919 TCAGCTTTCAAACACAGCAAAAATT 59.357 32.000 0.00 0.00 35.88 1.82
167 168 5.177326 TCAGCTTTCAAACACAGCAAAAAT 58.823 33.333 0.00 0.00 35.88 1.82
168 169 4.564041 TCAGCTTTCAAACACAGCAAAAA 58.436 34.783 0.00 0.00 35.88 1.94
169 170 4.185467 TCAGCTTTCAAACACAGCAAAA 57.815 36.364 0.00 0.00 35.88 2.44
170 171 3.865011 TCAGCTTTCAAACACAGCAAA 57.135 38.095 0.00 0.00 35.88 3.68
171 172 3.491276 CCATCAGCTTTCAAACACAGCAA 60.491 43.478 0.00 0.00 35.88 3.91
172 173 2.034939 CCATCAGCTTTCAAACACAGCA 59.965 45.455 0.00 0.00 35.88 4.41
173 174 2.669364 CCATCAGCTTTCAAACACAGC 58.331 47.619 0.00 0.00 0.00 4.40
174 175 2.034939 TGCCATCAGCTTTCAAACACAG 59.965 45.455 0.00 0.00 44.23 3.66
175 176 2.030371 TGCCATCAGCTTTCAAACACA 58.970 42.857 0.00 0.00 44.23 3.72
176 177 2.798976 TGCCATCAGCTTTCAAACAC 57.201 45.000 0.00 0.00 44.23 3.32
177 178 4.339872 AAATGCCATCAGCTTTCAAACA 57.660 36.364 0.00 0.00 44.23 2.83
178 179 5.678132 AAAAATGCCATCAGCTTTCAAAC 57.322 34.783 0.00 0.00 44.23 2.93
245 246 5.039920 AGGCCAAGATTTTGCTTCTTTTT 57.960 34.783 5.01 0.00 31.11 1.94
246 247 4.694760 AGGCCAAGATTTTGCTTCTTTT 57.305 36.364 5.01 0.00 31.11 2.27
247 248 4.694760 AAGGCCAAGATTTTGCTTCTTT 57.305 36.364 5.01 0.00 31.11 2.52
248 249 4.694760 AAAGGCCAAGATTTTGCTTCTT 57.305 36.364 5.01 0.00 33.75 2.52
249 250 4.694760 AAAAGGCCAAGATTTTGCTTCT 57.305 36.364 5.01 0.00 32.79 2.85
250 251 5.059161 AGAAAAAGGCCAAGATTTTGCTTC 58.941 37.500 5.01 0.00 31.49 3.86
251 252 5.039920 AGAAAAAGGCCAAGATTTTGCTT 57.960 34.783 5.01 0.00 31.49 3.91
252 253 4.694760 AGAAAAAGGCCAAGATTTTGCT 57.305 36.364 5.01 3.83 30.81 3.91
253 254 5.059161 AGAAGAAAAAGGCCAAGATTTTGC 58.941 37.500 5.01 1.09 32.79 3.68
254 255 8.309656 AGATAGAAGAAAAAGGCCAAGATTTTG 58.690 33.333 5.01 0.00 0.00 2.44
255 256 8.427902 AGATAGAAGAAAAAGGCCAAGATTTT 57.572 30.769 5.01 6.90 0.00 1.82
256 257 8.427902 AAGATAGAAGAAAAAGGCCAAGATTT 57.572 30.769 5.01 0.00 0.00 2.17
257 258 8.427902 AAAGATAGAAGAAAAAGGCCAAGATT 57.572 30.769 5.01 0.00 0.00 2.40
258 259 8.309656 CAAAAGATAGAAGAAAAAGGCCAAGAT 58.690 33.333 5.01 0.00 0.00 2.40
259 260 7.287696 ACAAAAGATAGAAGAAAAAGGCCAAGA 59.712 33.333 5.01 0.00 0.00 3.02
260 261 7.436933 ACAAAAGATAGAAGAAAAAGGCCAAG 58.563 34.615 5.01 0.00 0.00 3.61
261 262 7.360113 ACAAAAGATAGAAGAAAAAGGCCAA 57.640 32.000 5.01 0.00 0.00 4.52
262 263 6.976934 ACAAAAGATAGAAGAAAAAGGCCA 57.023 33.333 5.01 0.00 0.00 5.36
263 264 9.929180 AATAACAAAAGATAGAAGAAAAAGGCC 57.071 29.630 0.00 0.00 0.00 5.19
295 296 7.751768 AACAACCCAAAAAGTGAATCAAAAA 57.248 28.000 0.00 0.00 0.00 1.94
296 297 7.550906 CCTAACAACCCAAAAAGTGAATCAAAA 59.449 33.333 0.00 0.00 0.00 2.44
297 298 7.044798 CCTAACAACCCAAAAAGTGAATCAAA 58.955 34.615 0.00 0.00 0.00 2.69
298 299 6.381420 TCCTAACAACCCAAAAAGTGAATCAA 59.619 34.615 0.00 0.00 0.00 2.57
299 300 5.894393 TCCTAACAACCCAAAAAGTGAATCA 59.106 36.000 0.00 0.00 0.00 2.57
300 301 6.399639 TCCTAACAACCCAAAAAGTGAATC 57.600 37.500 0.00 0.00 0.00 2.52
301 302 5.221441 GCTCCTAACAACCCAAAAAGTGAAT 60.221 40.000 0.00 0.00 0.00 2.57
302 303 4.098807 GCTCCTAACAACCCAAAAAGTGAA 59.901 41.667 0.00 0.00 0.00 3.18
303 304 3.634910 GCTCCTAACAACCCAAAAAGTGA 59.365 43.478 0.00 0.00 0.00 3.41
304 305 3.636764 AGCTCCTAACAACCCAAAAAGTG 59.363 43.478 0.00 0.00 0.00 3.16
305 306 3.636764 CAGCTCCTAACAACCCAAAAAGT 59.363 43.478 0.00 0.00 0.00 2.66
306 307 3.005791 CCAGCTCCTAACAACCCAAAAAG 59.994 47.826 0.00 0.00 0.00 2.27
307 308 2.962421 CCAGCTCCTAACAACCCAAAAA 59.038 45.455 0.00 0.00 0.00 1.94
308 309 2.593026 CCAGCTCCTAACAACCCAAAA 58.407 47.619 0.00 0.00 0.00 2.44
309 310 1.203001 CCCAGCTCCTAACAACCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
310 311 0.404040 CCCAGCTCCTAACAACCCAA 59.596 55.000 0.00 0.00 0.00 4.12
311 312 1.497309 CCCCAGCTCCTAACAACCCA 61.497 60.000 0.00 0.00 0.00 4.51
312 313 1.205460 TCCCCAGCTCCTAACAACCC 61.205 60.000 0.00 0.00 0.00 4.11
313 314 0.253327 CTCCCCAGCTCCTAACAACC 59.747 60.000 0.00 0.00 0.00 3.77
314 315 0.253327 CCTCCCCAGCTCCTAACAAC 59.747 60.000 0.00 0.00 0.00 3.32
315 316 0.178873 ACCTCCCCAGCTCCTAACAA 60.179 55.000 0.00 0.00 0.00 2.83
316 317 0.714180 TACCTCCCCAGCTCCTAACA 59.286 55.000 0.00 0.00 0.00 2.41
317 318 2.104669 ATACCTCCCCAGCTCCTAAC 57.895 55.000 0.00 0.00 0.00 2.34
318 319 2.690840 GAATACCTCCCCAGCTCCTAA 58.309 52.381 0.00 0.00 0.00 2.69
319 320 1.480683 CGAATACCTCCCCAGCTCCTA 60.481 57.143 0.00 0.00 0.00 2.94
320 321 0.760945 CGAATACCTCCCCAGCTCCT 60.761 60.000 0.00 0.00 0.00 3.69
321 322 1.749033 CGAATACCTCCCCAGCTCC 59.251 63.158 0.00 0.00 0.00 4.70
322 323 1.069935 GCGAATACCTCCCCAGCTC 59.930 63.158 0.00 0.00 0.00 4.09
323 324 1.689233 TGCGAATACCTCCCCAGCT 60.689 57.895 0.00 0.00 0.00 4.24
324 325 1.523938 GTGCGAATACCTCCCCAGC 60.524 63.158 0.00 0.00 0.00 4.85
325 326 1.146263 GGTGCGAATACCTCCCCAG 59.854 63.158 0.00 0.00 37.74 4.45
326 327 3.316029 GGTGCGAATACCTCCCCA 58.684 61.111 0.00 0.00 37.74 4.96
332 333 1.523938 GCCTCCAGGTGCGAATACC 60.524 63.158 0.00 0.00 41.17 2.73
333 334 0.107654 AAGCCTCCAGGTGCGAATAC 60.108 55.000 0.00 0.00 37.57 1.89
334 335 0.178068 GAAGCCTCCAGGTGCGAATA 59.822 55.000 0.00 0.00 37.57 1.75
335 336 1.078143 GAAGCCTCCAGGTGCGAAT 60.078 57.895 0.00 0.00 37.57 3.34
336 337 2.172483 GAGAAGCCTCCAGGTGCGAA 62.172 60.000 0.00 0.00 37.57 4.70
337 338 2.604686 AGAAGCCTCCAGGTGCGA 60.605 61.111 0.00 0.00 37.57 5.10
338 339 2.125350 GAGAAGCCTCCAGGTGCG 60.125 66.667 0.00 0.00 37.57 5.34
348 349 1.192428 TTAGTTCGGGAGGAGAAGCC 58.808 55.000 0.00 0.00 0.00 4.35
349 350 3.329929 TTTTAGTTCGGGAGGAGAAGC 57.670 47.619 0.00 0.00 0.00 3.86
350 351 4.113354 CGATTTTAGTTCGGGAGGAGAAG 58.887 47.826 0.00 0.00 33.05 2.85
351 352 3.512724 ACGATTTTAGTTCGGGAGGAGAA 59.487 43.478 0.00 0.00 40.83 2.87
352 353 3.094572 ACGATTTTAGTTCGGGAGGAGA 58.905 45.455 0.00 0.00 40.83 3.71
353 354 3.521947 ACGATTTTAGTTCGGGAGGAG 57.478 47.619 0.00 0.00 40.83 3.69
354 355 3.853475 GAACGATTTTAGTTCGGGAGGA 58.147 45.455 0.00 0.00 40.83 3.71
361 362 5.106830 ACAATCCCACGAACGATTTTAGTTC 60.107 40.000 0.14 0.00 43.16 3.01
362 363 4.758165 ACAATCCCACGAACGATTTTAGTT 59.242 37.500 0.14 0.00 34.07 2.24
363 364 4.320870 ACAATCCCACGAACGATTTTAGT 58.679 39.130 0.14 0.00 0.00 2.24
364 365 4.939509 ACAATCCCACGAACGATTTTAG 57.060 40.909 0.14 0.00 0.00 1.85
365 366 5.232626 CGATACAATCCCACGAACGATTTTA 59.767 40.000 0.14 0.00 0.00 1.52
366 367 4.033587 CGATACAATCCCACGAACGATTTT 59.966 41.667 0.14 0.00 0.00 1.82
367 368 3.554324 CGATACAATCCCACGAACGATTT 59.446 43.478 0.14 0.00 0.00 2.17
368 369 3.120792 CGATACAATCCCACGAACGATT 58.879 45.455 0.14 0.00 0.00 3.34
369 370 2.100252 ACGATACAATCCCACGAACGAT 59.900 45.455 0.14 0.00 0.00 3.73
370 371 1.473677 ACGATACAATCCCACGAACGA 59.526 47.619 0.14 0.00 0.00 3.85
371 372 1.917273 ACGATACAATCCCACGAACG 58.083 50.000 0.00 0.00 0.00 3.95
372 373 3.118542 GGTACGATACAATCCCACGAAC 58.881 50.000 0.00 0.00 0.00 3.95
373 374 3.441496 GGTACGATACAATCCCACGAA 57.559 47.619 0.00 0.00 0.00 3.85
413 414 1.519455 GATCGTTCGGCCTGGACAG 60.519 63.158 0.00 0.00 0.00 3.51
414 415 2.577059 GATCGTTCGGCCTGGACA 59.423 61.111 0.00 0.00 0.00 4.02
415 416 2.582498 CGATCGTTCGGCCTGGAC 60.582 66.667 7.03 0.00 41.74 4.02
416 417 2.752640 TCGATCGTTCGGCCTGGA 60.753 61.111 15.94 0.00 45.53 3.86
417 418 2.582498 GTCGATCGTTCGGCCTGG 60.582 66.667 15.94 0.00 44.14 4.45
422 423 1.785870 CGATATCGGTCGATCGTTCGG 60.786 57.143 19.01 17.77 44.06 4.30
423 424 1.511037 CGATATCGGTCGATCGTTCG 58.489 55.000 19.01 19.53 44.06 3.95
428 429 2.244281 GACCACGATATCGGTCGATC 57.756 55.000 27.58 13.98 42.19 3.69
433 434 2.764572 AGAAAAGGACCACGATATCGGT 59.235 45.455 27.58 17.17 44.95 4.69
434 435 3.454371 AGAAAAGGACCACGATATCGG 57.546 47.619 27.58 16.44 44.95 4.18
435 436 5.350365 TGAAAAGAAAAGGACCACGATATCG 59.650 40.000 23.18 23.18 46.33 2.92
436 437 6.737254 TGAAAAGAAAAGGACCACGATATC 57.263 37.500 0.00 0.00 0.00 1.63
454 455 3.108847 ACCCCACTTCCAACTTGAAAA 57.891 42.857 0.00 0.00 0.00 2.29
455 456 2.838637 ACCCCACTTCCAACTTGAAA 57.161 45.000 0.00 0.00 0.00 2.69
456 457 3.053544 TGTTACCCCACTTCCAACTTGAA 60.054 43.478 0.00 0.00 0.00 2.69
457 458 2.510382 TGTTACCCCACTTCCAACTTGA 59.490 45.455 0.00 0.00 0.00 3.02
458 459 2.938838 TGTTACCCCACTTCCAACTTG 58.061 47.619 0.00 0.00 0.00 3.16
459 460 3.895704 ATGTTACCCCACTTCCAACTT 57.104 42.857 0.00 0.00 0.00 2.66
460 461 3.895704 AATGTTACCCCACTTCCAACT 57.104 42.857 0.00 0.00 0.00 3.16
461 462 6.599356 AAATAATGTTACCCCACTTCCAAC 57.401 37.500 0.00 0.00 0.00 3.77
462 463 7.511028 AGAAAAATAATGTTACCCCACTTCCAA 59.489 33.333 0.00 0.00 0.00 3.53
463 464 7.013834 AGAAAAATAATGTTACCCCACTTCCA 58.986 34.615 0.00 0.00 0.00 3.53
464 465 7.476540 AGAAAAATAATGTTACCCCACTTCC 57.523 36.000 0.00 0.00 0.00 3.46
467 468 8.517056 CGTAAAGAAAAATAATGTTACCCCACT 58.483 33.333 0.00 0.00 0.00 4.00
468 469 7.756272 CCGTAAAGAAAAATAATGTTACCCCAC 59.244 37.037 0.00 0.00 0.00 4.61
469 470 7.668886 TCCGTAAAGAAAAATAATGTTACCCCA 59.331 33.333 0.00 0.00 0.00 4.96
470 471 8.054152 TCCGTAAAGAAAAATAATGTTACCCC 57.946 34.615 0.00 0.00 0.00 4.95
483 484 9.880157 AGTAAGCATAGTATTCCGTAAAGAAAA 57.120 29.630 0.00 0.00 0.00 2.29
484 485 9.880157 AAGTAAGCATAGTATTCCGTAAAGAAA 57.120 29.630 0.00 0.00 0.00 2.52
485 486 9.880157 AAAGTAAGCATAGTATTCCGTAAAGAA 57.120 29.630 0.00 0.00 0.00 2.52
486 487 9.880157 AAAAGTAAGCATAGTATTCCGTAAAGA 57.120 29.630 0.00 0.00 0.00 2.52
491 492 9.826574 TTCATAAAAGTAAGCATAGTATTCCGT 57.173 29.630 0.00 0.00 0.00 4.69
513 514 9.125026 GAACCTATGAACTGGATATGTTTTCAT 57.875 33.333 0.00 0.00 43.60 2.57
514 515 7.556275 GGAACCTATGAACTGGATATGTTTTCA 59.444 37.037 0.00 0.00 0.00 2.69
515 516 7.775561 AGGAACCTATGAACTGGATATGTTTTC 59.224 37.037 0.00 0.00 0.00 2.29
516 517 7.643123 AGGAACCTATGAACTGGATATGTTTT 58.357 34.615 0.00 0.00 0.00 2.43
517 518 7.213178 AGGAACCTATGAACTGGATATGTTT 57.787 36.000 0.00 0.00 0.00 2.83
518 519 6.831664 AGGAACCTATGAACTGGATATGTT 57.168 37.500 0.00 0.00 0.00 2.71
519 520 6.831664 AAGGAACCTATGAACTGGATATGT 57.168 37.500 0.00 0.00 0.00 2.29
520 521 7.735917 TGTAAGGAACCTATGAACTGGATATG 58.264 38.462 0.00 0.00 0.00 1.78
521 522 7.931015 TGTAAGGAACCTATGAACTGGATAT 57.069 36.000 0.00 0.00 0.00 1.63
522 523 7.743116 TTGTAAGGAACCTATGAACTGGATA 57.257 36.000 0.00 0.00 0.00 2.59
523 524 6.636454 TTGTAAGGAACCTATGAACTGGAT 57.364 37.500 0.00 0.00 0.00 3.41
524 525 6.442541 TTTGTAAGGAACCTATGAACTGGA 57.557 37.500 0.00 0.00 0.00 3.86
525 526 7.519032 TTTTTGTAAGGAACCTATGAACTGG 57.481 36.000 0.00 0.00 0.00 4.00
561 562 1.523032 CCCCTAATCGAACGCCACC 60.523 63.158 0.00 0.00 0.00 4.61
596 597 0.518636 TGAACAGCGAGCTCAAATGC 59.481 50.000 15.40 8.93 0.00 3.56
604 605 2.927553 ATTTTCCATGAACAGCGAGC 57.072 45.000 0.00 0.00 0.00 5.03
608 609 5.643379 TCTGGTAATTTTCCATGAACAGC 57.357 39.130 0.00 0.00 34.26 4.40
610 611 5.076182 TGCTCTGGTAATTTTCCATGAACA 58.924 37.500 0.00 0.00 34.26 3.18
617 618 5.335976 CCAGTCTTTGCTCTGGTAATTTTCC 60.336 44.000 3.38 0.00 44.19 3.13
618 619 5.703876 CCAGTCTTTGCTCTGGTAATTTTC 58.296 41.667 3.38 0.00 44.19 2.29
637 638 6.100859 ACCATTTGATAGAGATGATGACCAGT 59.899 38.462 0.00 0.00 0.00 4.00
649 650 5.500234 TGGACCTGAAACCATTTGATAGAG 58.500 41.667 0.00 0.00 0.00 2.43
661 662 2.357952 GGTCTTGTGTTGGACCTGAAAC 59.642 50.000 5.04 0.00 45.99 2.78
692 693 2.238084 AGCCTAGAGTGTGTCCATCA 57.762 50.000 0.00 0.00 0.00 3.07
765 771 1.734477 CAGTGAACACGAGCTCCCG 60.734 63.158 8.47 0.00 36.20 5.14
785 791 2.154462 AGACAATACAACACTGGCTGC 58.846 47.619 0.00 0.00 0.00 5.25
814 820 3.521534 GCTGCATACATGTTCAGCG 57.478 52.632 22.64 13.75 41.80 5.18
822 845 1.283029 ACTTCACCCAGCTGCATACAT 59.717 47.619 8.66 0.00 0.00 2.29
826 849 1.303888 CCACTTCACCCAGCTGCAT 60.304 57.895 8.66 0.00 0.00 3.96
879 1299 1.064060 GGAAGCGATTGATGGAAACGG 59.936 52.381 0.00 0.00 0.00 4.44
961 1382 3.525545 GAGGGACGTCTACCGGGC 61.526 72.222 16.46 0.00 42.24 6.13
965 1479 1.310933 TTCGCTGAGGGACGTCTACC 61.311 60.000 16.46 9.22 0.00 3.18
968 1482 0.894184 TTCTTCGCTGAGGGACGTCT 60.894 55.000 16.46 0.00 0.00 4.18
970 1484 0.038159 CTTTCTTCGCTGAGGGACGT 60.038 55.000 0.00 0.00 0.00 4.34
978 1492 2.222908 GGATTCGCTTCTTTCTTCGCTG 60.223 50.000 0.00 0.00 0.00 5.18
982 1496 3.488216 GCCATGGATTCGCTTCTTTCTTC 60.488 47.826 18.40 0.00 0.00 2.87
995 1509 3.191182 GGGACGAAAGCCATGGATT 57.809 52.632 18.40 14.20 0.00 3.01
1351 1874 4.517815 TACCATCGTTCGCCCGCC 62.518 66.667 0.00 0.00 0.00 6.13
1428 1951 2.101770 CGGAGGTCGCGGAAGTAC 59.898 66.667 6.13 0.00 0.00 2.73
1511 2043 7.591006 ACAAAGATACACCAATACAAGTACG 57.409 36.000 0.00 0.00 0.00 3.67
1525 2057 6.308524 CGTACGGACACAAATACAAAGATACA 59.691 38.462 7.57 0.00 0.00 2.29
1530 2062 3.742369 ACCGTACGGACACAAATACAAAG 59.258 43.478 39.52 8.36 38.96 2.77
1571 2107 4.688879 ACACACAATACACGTCACCTAATG 59.311 41.667 0.00 0.00 0.00 1.90
1575 2111 2.902705 ACACACAATACACGTCACCT 57.097 45.000 0.00 0.00 0.00 4.00
1588 2124 8.729756 CCATGAGAACATTCTTAATAACACACA 58.270 33.333 0.00 0.00 37.73 3.72
1589 2125 8.730680 ACCATGAGAACATTCTTAATAACACAC 58.269 33.333 0.00 0.00 37.73 3.82
1590 2126 8.862325 ACCATGAGAACATTCTTAATAACACA 57.138 30.769 0.00 0.00 37.73 3.72
1610 2183 7.802738 TCCGAATTTATATTTAGCGAACCATG 58.197 34.615 0.00 0.00 0.00 3.66
1612 2185 7.496591 ACTTCCGAATTTATATTTAGCGAACCA 59.503 33.333 0.00 0.00 0.00 3.67
1638 2211 4.261994 GGCTCAGAAAATTAACACAGGCAA 60.262 41.667 0.00 0.00 0.00 4.52
1640 2213 3.255642 TGGCTCAGAAAATTAACACAGGC 59.744 43.478 0.00 0.00 0.00 4.85
1641 2214 5.222631 GTTGGCTCAGAAAATTAACACAGG 58.777 41.667 0.00 0.00 0.00 4.00
1647 2221 3.569250 GCCGTTGGCTCAGAAAATTAA 57.431 42.857 0.00 0.00 46.69 1.40
1705 2305 0.252513 TACCAGGTTGCTAGGAGGCA 60.253 55.000 0.00 0.00 40.74 4.75
1707 2307 2.160721 TCTACCAGGTTGCTAGGAGG 57.839 55.000 0.00 0.00 0.00 4.30
1714 2314 3.895232 TCTCAGAATCTACCAGGTTGC 57.105 47.619 0.00 0.00 0.00 4.17
1750 2350 2.346847 GCACGCAGTAAGATGAGAACAG 59.653 50.000 0.00 0.00 41.61 3.16
1768 2370 1.352156 GACCCTCGTCAACATCGCAC 61.352 60.000 0.00 0.00 38.99 5.34
1780 2382 5.310182 GAGGATCAAAAGGAGGACCCTCG 62.310 56.522 9.73 0.00 38.97 4.63
1784 2386 2.573915 ACAGAGGATCAAAAGGAGGACC 59.426 50.000 0.00 0.00 37.82 4.46
1840 2442 6.004408 TCCGGTTTATTAACAAAGAAGCAC 57.996 37.500 0.00 0.00 35.92 4.40
1879 2481 1.261480 ACTCTGCTGATCTTCCGTGT 58.739 50.000 0.00 0.00 0.00 4.49
1880 2482 2.164422 TGTACTCTGCTGATCTTCCGTG 59.836 50.000 0.00 0.00 0.00 4.94
1881 2483 2.425312 CTGTACTCTGCTGATCTTCCGT 59.575 50.000 0.00 0.00 0.00 4.69
1908 2510 8.631797 GGTGGGTGTTATTTAGTTTTGTTCTTA 58.368 33.333 0.00 0.00 0.00 2.10
1969 2571 3.558411 GAGCGGTCATGCACGAGC 61.558 66.667 10.30 1.05 42.57 5.03
1970 2572 2.887568 GGAGCGGTCATGCACGAG 60.888 66.667 17.59 0.00 37.31 4.18
1971 2573 3.381983 AGGAGCGGTCATGCACGA 61.382 61.111 17.59 0.00 37.31 4.35
1972 2574 3.190849 CAGGAGCGGTCATGCACG 61.191 66.667 16.82 4.75 37.31 5.34
2025 2630 4.603946 GGGATCTACGGTGGCGGC 62.604 72.222 0.00 0.00 0.00 6.53
2031 2636 3.537874 GGCAGCGGGATCTACGGT 61.538 66.667 8.77 8.77 43.47 4.83
2058 2663 3.443045 GATGCGGCTTGTGTGGGG 61.443 66.667 0.00 0.00 0.00 4.96
2060 2665 1.078497 TAGGATGCGGCTTGTGTGG 60.078 57.895 0.00 0.00 0.00 4.17
2061 2666 1.709147 GCTAGGATGCGGCTTGTGTG 61.709 60.000 0.00 0.00 0.00 3.82
2062 2667 1.450312 GCTAGGATGCGGCTTGTGT 60.450 57.895 0.00 0.00 0.00 3.72
2086 2700 4.475135 GAGGGGAAGAGGGTGCGC 62.475 72.222 0.00 0.00 0.00 6.09
2088 2702 2.371259 GGAGAGGGGAAGAGGGTGC 61.371 68.421 0.00 0.00 0.00 5.01
2089 2703 2.060980 CGGAGAGGGGAAGAGGGTG 61.061 68.421 0.00 0.00 0.00 4.61
2090 2704 2.246874 TCGGAGAGGGGAAGAGGGT 61.247 63.158 0.00 0.00 0.00 4.34
2107 2721 3.984749 GGGAGCCCGCGAGATCTC 61.985 72.222 8.23 13.05 0.00 2.75
2121 2737 2.040464 GAGGAGGCTCCATGGGGA 60.040 66.667 33.86 0.00 39.61 4.81
2122 2738 3.174265 GGAGGAGGCTCCATGGGG 61.174 72.222 33.86 10.39 42.86 4.96
2140 2756 4.724399 TCATCCACTCTCCAGTAGATCTC 58.276 47.826 0.00 0.00 29.31 2.75
2152 2768 3.326006 TCTGCTTGTCTTTCATCCACTCT 59.674 43.478 0.00 0.00 0.00 3.24
2162 2778 5.594926 CATTTTGAACCTCTGCTTGTCTTT 58.405 37.500 0.00 0.00 0.00 2.52
2178 2794 1.378378 TGCGGGAGAGGCATTTTGA 59.622 52.632 0.00 0.00 35.04 2.69
2199 2815 1.153449 CGCGGGAATGCTTGGTAGA 60.153 57.895 0.00 0.00 0.00 2.59
2252 2868 2.427245 CCCGCGTCTCCCTCTGAAT 61.427 63.158 4.92 0.00 0.00 2.57
2292 2908 3.024609 CGTCACGGATCCGCATCG 61.025 66.667 33.62 27.46 44.19 3.84
2305 2921 3.062466 CAGGAGAGGGCGTCGTCA 61.062 66.667 12.79 0.00 0.00 4.35
2317 2933 2.664081 GGAGCACAGGGACCAGGAG 61.664 68.421 0.00 0.00 0.00 3.69
2321 2937 4.954118 ACGGGAGCACAGGGACCA 62.954 66.667 0.00 0.00 0.00 4.02
2338 2954 2.119611 TCCGCTTCCCTCCACTCA 59.880 61.111 0.00 0.00 0.00 3.41
2364 2992 1.078823 ACCTGTGGGACTGTGGATCTA 59.921 52.381 0.00 0.00 36.25 1.98
2366 2994 1.568504 TACCTGTGGGACTGTGGATC 58.431 55.000 0.00 0.00 36.25 3.36
2371 2999 0.905357 GAGCATACCTGTGGGACTGT 59.095 55.000 0.00 0.00 36.25 3.55
2374 3002 1.195115 TCTGAGCATACCTGTGGGAC 58.805 55.000 0.00 0.00 36.25 4.46
2378 3006 1.938577 GCACATCTGAGCATACCTGTG 59.061 52.381 1.91 1.91 37.60 3.66
2379 3007 1.556451 TGCACATCTGAGCATACCTGT 59.444 47.619 0.00 0.00 36.74 4.00
2388 3016 0.390866 ACGAGCCTTGCACATCTGAG 60.391 55.000 0.00 0.00 0.00 3.35
2401 3029 2.311688 ATTCCCGATCCACACGAGCC 62.312 60.000 0.00 0.00 0.00 4.70
2406 3034 0.734889 CAGCAATTCCCGATCCACAC 59.265 55.000 0.00 0.00 0.00 3.82
2435 3063 2.416836 CGCCCTCGAAGTAGATTCACAA 60.417 50.000 0.00 0.00 37.83 3.33
2437 3065 1.404391 TCGCCCTCGAAGTAGATTCAC 59.596 52.381 0.00 0.00 42.44 3.18
2438 3066 1.758936 TCGCCCTCGAAGTAGATTCA 58.241 50.000 0.00 0.00 42.44 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.