>input_sequence_79127
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-------------------------------------------------------------------------ATGGCTT
TCGTCCCGGAGGCACCTGCAGCGAGGAAGCTCCTGCTACGGAGCGGCGGAGCCATGACGCGGTCCCTGCGCGACGCCGGC
CTCGGCTTCGACCTCGACGGTGCCGGGCGCTTTCTCGCCCCCCTGTGGGAGCTCATCAAGCAGAAGGCCACCGAGCTCGC
GGCCTTCCTCGCCGGCCTCCTCGCCGCGCTCGCCAAGAAGGCCGACGAGCTCTTCCCGCCGGAGACCCGCTCGGAGACGC
TCGCGCAGTGGGTGCGCATCGGCGTCACCGTTGTGCTCCCGGCCGCGCTCGGCGCCCTTGTGCTGTTCTGGCTCGCCCGG
TGCTGCTGC---------TGCGGCCGCCGCCGCGGCGGGCGAACGATGGTAGCTCCCGGCCGCCACGGCGCGCGCATGCC
GCGCTACGCGTTCGAGGATGATCCCCGGACGTACTTCCGCGACCTCCGTGCAAAGAAGCCCCTCGTATACTAG-------
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>chr2B_1_TraesCS2B01G200400
ACACACAGATATTTTCACATACATTATATGTAAATTTAAGTAAAAATACCAAGACATTTATGCTACGAATTTGACATTGC
AAATTATTTTGTTTGTATGCTAGAAATTTCCATGATGTTTTCTTCATTTGGGTTATTTTTAAAATTTATTCCTGTCCACC
CATGGCAATTTTTGCTGTGTTTGAAAGCTGATGGCATTTTTTAAATTAACAAAGCAAAAAATCTGGGTTTTTTTTCTCAC
AGCAAAAAAAGAAGCAAAATCTTGGCCTTTTTCTTCTATCTTTTGTTATTTGGCTTTTTTGATTCACTTTTTGGGTTGTT
AGGAGCTGGGGAGGTATTCGCACCTGGAGGCTTCTCCTCCCGAACTAAAATCGTTCGTGGGATTGTATCGTACCGAACCT
CTTGGTCTGGCACCTGTCCAGGCCGAACGATCGACCGATATCGTGGTCCTTTTCTTTTCAAGTTGGAAGTGGGGTAACAT
TATTTTTCTTTACGGAATACTATGCTTACTTTTATGAAAACATATCCAGTTCATAGGTTCCTTACAAAAAATTCTCAAAA
TGGTGGCGTTCGATTAGGGGAGTCCGTGGGAGAAAAGCATTTGAGCTCGCTGTTCATGGAAAATTACCAGAGCAAAGACT
GGTCATCATCTCTATCAAATGGTTTCAGGTCCAACACAAGACCCATATATTCTGATGGACACACTCTAGGCTAG---TAC
ATCGAGTACCTTGCAGGCTAGTACATCGAGTCACGTGACTC--ATGAGCTCGGGAGCTCGTGTTCACTGTGCAGCCAGTG
TTGTATTGTCTCTTCAAAGC-----------------GCTGAACATGTATGCAGCT------------------------
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-----------------------------------------------------GGGTGAAGTGGACTGGTTATTCGTTCG
GCGAAACGCCAAACGCTTCCGTTTCCATCAATCGCTTCCATCTTTATATCGGACCCCGCACCTCACTCCGTCAGT-CCCG
CTACACTCACACCAAAGACCAG----------------------------------------------------------
-----------------------------------CCCGGTAGACGTCCCTCAGCGAAGAAAGAAGCGAATCCATGGCTT
TCGTCCCGGAGGCACCTGCAGCGAGGAAGCTCCTGCTACGGAGCGGCGGAGCCATGACGCGGTCCCTGCGCGACGCCGGC
CTCGGCTTCGACCTCGACGGTGCCGGGCGCTTTCTCGCCCCCCTGTGGGAGCTCATCAAGCAGAAGGCCACCGAGCTCGC
GGCCTTCCTCGCCGGCCTCCTCGCCGCGCTCGCCAAGAAGGCCGACGAGCTCTTCCCGCCGGAGACCCGCTCGGAGACGC
TCGCGCAGTGGGTGCGCATCGGCGTCACCGTTGTGCTCCCGGCCGCGCTCGGCGCCCTTGTGCTGTTCTGGCTCGCCCGG
TGCTGCTGC---------TGCGGCCGCCGCCGCGGCGGGCGAACGATGGTAGCTCCCGGCCGCCACGGCGCGCGCATGCC
GCGCTACGCGTTCGAGGATGATCCCCGGACGTACTTCCGCGACCTCCGTGCAAAGAAGCCCCTCGTATACTAGTGACTCG
TCTTCGGTATGTTCCACCTCACGT---------GTGTACATGCGTACTTGTATTGGTGTATCT----TTGTATTTGTGTC
CGTACGGTTTCGTGCCATTGTGTGGTCATTAGGTGACGTGTATTGTGTGTTAT---------------------------
----------TAAGAATGTTCTCATGGTTCGCTAAATATAAATTCGGAAGTTGCC-TGTGTTAATTTTCTGAGCCAACGG
CCTGTTTTTATCTATC--------------------------AAGTAAATATTTGCTGATGCTCTGCCTCCTAGCAACCT
GGTAGATTCTGAGATGCTTTGACGATTGACTGTTCTCATCT--TACTGCGTGCGATGTTGACGAGGGTCCTCCTTTTGAT
CCTCTGTTATTTTGCAATGTTCTCTTCTTGAGATGTTCACCGTGCTTCTTTGTTAATAAACCGGAATACAAGCCACACAC
ACACGGAAGATCAGCAGAGTACAGCTGCCTAAGAACAAAACTAAATAACACCCACCAGAAAATAAATTACAGGTTTTTTT
TTAGATAACTGCTCGTGCATGACCGCTCCTGCGATTCCCCTCGCGCCCGCCCCCACCTCCAACA---CCGCCGCCACCGT
AGATCCCGCTGCCGCTATCGCCCCCCACACAAG---------CCGCATCCTAGCGACGGGCGCACCCTCTTCCCCTCTCC
GAGATCT--CGCGGGCTCCCCATGGAGCCTCCTCCGAGATCTACTGGAGAGTGGATGAAAGACAAGCAGAGGTTCAAAAT
GCCTCTCCCGCATGTCTACCAAGCATTCCCGCGGATGCTGCGGCCGCTCAGCTCCATCTCGCCGGCCATTCAGAGGGAGA
CGCGGGGGAGGCGGTGGAGGGAGAGGGCGATGCGGATCCGTGACGACGCCCTCTCCTGGTCCCTGTGCTCCCGTGAGTGG
AGGGAAGCGGAC------------CTGGATTTAGATCCACAGTCCCACAGGTATGCTCAGATGTGCAAGGCTCGTGTGGA
TCGGGAATTGCTGAATCTAGCTTTGTGAATCTACTTCGAGGGCGACTTCTCGGAGAAA
>chr2D_546
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-----------------------------------------------------------------AAAAAATTCTCAAAA
TAGTGGCGTTCGATTAGGGGAGTCCGTGGGAGAAAACCATTTGAACTCACGGTTCATACAAAATTACCAGAGCAAAGGCT
GGTCATCATTTCTATCAAATGATTTCAGGTCCAACACAAGACCCATATATTCCGATGGACACAGTAGACGCCAGTACTAC
ATCGAGTACCTTGCAGGCTAGTAGATCGAGTCACGTGGCTCAGATGAGCTAGGGAGCTCGTGTGCACTGTCCAGCCAGTG
TTGTATTGTCTCTTCAAAGAGCTACAACCTACATGGAGCTGAACGTGTGTGCAGCTCATTAAACNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAACGGGTGAAGTGGACTGGTTATTCGTTCG
GCGAAAAGCCAAACGCTTTCGTTTCCATCAATCGCTTCCATCTTTATATCGGACCCCGCACCTCACTCCGTCAGTCCCCG
CTACACTCACACCAAAGACCAAACCCAGTTACCACATGACATGTGTGGTTAGCTATCTTACGCTAAGTTGAGACAAGTAT
TTGTGGAAGAAGAAGAAAGAACGGGAAAGACCAAACCCAGTCGTCGTCCCTGAGCAAAGAAAGAAGCGGATCCATGGCTT
TCGTCCCGGAGGCACCTGCAGCGAGGAAGCTCCTGCTACGGCGCGGCGGAGCCGTGGCGCGGTCCCTGCGCGACGCCGGC
CTCGGCTTCGACCCCGACGGCGCCGGGCGCTTTCTCGCCCCCCTGTGGGAGCTCATCAAGCAGAAGGCCGCCGAGCTCGC
GGCCTTCCTCGCCGGCCTCCTCGCCGCGCTCGCCAAGAAGGCCGACGAGCTCTTCCCGCCGGAGACCCGCTCGGAGACGC
TCGCGCAGTGGGTGCGCGTCGGCGTCACCGTTGTGCTCCCGGCCGCGCTCGGCGCCCTTGTGCTGTTCTGGCTCGCCCGG
TGCTGCTGCCGCTGCTGCTGCGGCCGCCGCCGCTGCGGGCGAACGATGGTGGCTCCCGGCCGCGGCGGCGCGCGCATGCC
GCGCTACGCGTTCGAGGATGATCCCCGGACATATTTCCGCGACCTCCGTGCAAAGAAGCCCCTCGTATACTAGTGACTCG
TCTTCGGTAAGTTTCACCTCACGTACGTACGCGGTGTACATGTGTACTTGTATTGGCGTATATATAGTTGTATTTGTGTC
CGTACGGTTTAGTGCTATTGTGCGGTTATTGGGTGACGTGTATCAGGTGTTATATTACTGTCTTATGTATACAGGATGCG
TATGCAAGGTTAAGAATGTTCTTAAGGTTCGCTAAATATAAATTTGGAAGGTTGCTTGTGATAATTTTCTGAGCCAACGG
CCTGTTTTTATCTATCAAGTAAACGTCATGTTTTTATCTATCAAGTAAACATTTGCTGATGCTCCGGCTCCTACCAACCT
GGTAGATTCTGAGATGCTTTGACGATTGATTGTTCTCATCTTATACTGCCTGCGATGTTGATGAGAGTCCTCCTTTTGAT
CCTCTGTTATTTTGCAATGTTCTCTTCTTGAGATGTTCACCTTGCTTCTTTGTTAATAAACCGGAATACAAGCCACACAC
G--CGGAAGATCAGCAGAGTACAGCTGCCAAAGAACAAAAGCAAATAACACCCACCAGAAAAAAATTACA----------
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>chr1D_1976
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----------------GCATGACCGCTCCTGCGATTCCCCTCGCCCCCGCCCCCACCTCCACCACAGCCACCGTCGCCGT
AGATCTCGCCGCCGCCCCCGTCGCTTCCACCCCCTGCGCTAACCGCATCCTCGCGACGGACATGCCCCCCTCCCCTCCCT
CTGAGATCCCGCGGGCAGCCCATGGAGCCTCCTCCCAGATCTACTGG-GAGTGGATGGAAGACAAGCAGAGGTACAAAAT
GCCTCTCCTGCATGCCTACCAAGCATTCACGCGGATGTTGTGGCCGCTCAACTCCATCTCGCCGGCCGTTCAGAGGGAGA
CACGGGGGAGGTGGTGGAGGGAGAGGGTGATGCGGATCCGAGACGACGCCCTTTCCCGGTCCCTGTGCTCCCGCGAGTGG
AGGGAAGCGGGGGAGGAAGCAGATCTGGATTCAAATCCTCACTCCGGCAGGTATGGTCAGATGTGCAAAGCTCATGTGGA
TCGGGAATTGCTGAATCTAGCTCTACGAATCTACTTCGAGGGCGACTTCTCAGAGAAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
-S----------------------------------S-------S---S-S------SS------------------S--
---------S-----------S------------------------------S----------S-SS-S--S--------
-----------------------S-------------S------------S------------S------S---------
-------------------S------------------------S---S-------------------------------
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------S-----------S-------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------S--S-S-------S---S------------S-----------
-----------------------------------------S-----------S--S-----------------------
-------------S------S------------------------------------------------S----------
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-----------------S--------------------------------------------------------------
---------------------------------S----------------S------------SS---------------
------------------------------S--S----------------------------------------------
---------S---S----------------------------S-------------S----S------------------
----------S----S------S---S---S------------SSS----------------------------------
----------------------S-S-------------------S-----S-SS------S-------------------
-------------------------------------------------S--------------S-S------S------
-----------------------------S-------------------S-----------S---S--------------
-----------------------------------------S--------------------------------------
SSS--------------------------S----------SS--------------------S--S-SSSSSSSSSSSSS
SSSSSSSSSSSSSSSS----------------------------S----------------S-------S---S-S----
-----S---S-----SSS--S-S-SSS---SSS------------------S-------S-SSS---S-S-------S-S
SS--SS----------SS-----------------S-----------S---------S---------------S------
--------S-----S-------------S--------S--S---------S----------------S------------
-S---------S---------------S------------S-----------S---S----------------S------
----------SS-------------------S-S----S--S---SS--------S------------S----S------
----------------------S-SS-------------------------S------
>forward_597
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-----------------GGGAGTCCGTGGGAGAAAAG-------------------------------------------
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>reverse_2305
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----------------------------------------------------------------TGCCTCCTAGCAACCT
GGTA----------------------------------------------------------------------------
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