Multiple sequence alignment - TraesCS2B01G192000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G192000 chr2B 100.000 3111 0 0 1 3111 167477948 167474838 0.000000e+00 5746.0
1 TraesCS2B01G192000 chr2B 86.813 273 33 3 1 271 2458941 2458670 5.040000e-78 302.0
2 TraesCS2B01G192000 chr2B 91.667 180 13 1 633 810 494876684 494876863 6.660000e-62 248.0
3 TraesCS2B01G192000 chr2B 96.947 131 4 0 2913 3043 547962485 547962615 1.450000e-53 220.0
4 TraesCS2B01G192000 chr2A 90.985 1808 74 39 810 2576 118466277 118464518 0.000000e+00 2353.0
5 TraesCS2B01G192000 chr2A 96.032 252 10 0 2653 2904 118464498 118464247 8.030000e-111 411.0
6 TraesCS2B01G192000 chr2A 88.679 265 16 10 371 632 118466521 118466268 8.380000e-81 311.0
7 TraesCS2B01G192000 chr2A 93.243 74 5 0 3038 3111 118464235 118464162 3.280000e-20 110.0
8 TraesCS2B01G192000 chr2D 94.317 1531 42 25 810 2300 117125807 117124282 0.000000e+00 2303.0
9 TraesCS2B01G192000 chr2D 94.425 574 14 6 2354 2915 117124276 117123709 0.000000e+00 867.0
10 TraesCS2B01G192000 chr2D 82.821 390 34 19 263 632 117126174 117125798 5.010000e-83 318.0
11 TraesCS2B01G192000 chr2D 87.500 72 3 1 3038 3109 117123711 117123646 9.250000e-11 78.7
12 TraesCS2B01G192000 chr5D 89.630 270 27 1 1 269 222450641 222450910 2.970000e-90 342.0
13 TraesCS2B01G192000 chr5D 88.189 254 29 1 7 259 470547713 470547460 5.040000e-78 302.0
14 TraesCS2B01G192000 chr5D 85.662 272 37 2 1 271 73744864 73745134 5.080000e-73 285.0
15 TraesCS2B01G192000 chr5D 95.683 139 3 2 2915 3051 59944479 59944342 1.450000e-53 220.0
16 TraesCS2B01G192000 chrUn 87.594 266 25 7 1 261 92266039 92266301 5.040000e-78 302.0
17 TraesCS2B01G192000 chr1D 87.500 256 28 4 1 254 332574318 332574065 3.030000e-75 292.0
18 TraesCS2B01G192000 chr7B 86.029 272 35 3 1 270 98752418 98752148 3.930000e-74 289.0
19 TraesCS2B01G192000 chr7B 91.304 184 11 3 631 809 48250537 48250354 2.400000e-61 246.0
20 TraesCS2B01G192000 chr7B 95.652 138 5 1 2905 3042 736367482 736367618 1.450000e-53 220.0
21 TraesCS2B01G192000 chr7A 86.029 272 35 3 1 270 589436946 589437216 3.930000e-74 289.0
22 TraesCS2B01G192000 chr1B 85.662 272 36 3 1 270 85399593 85399323 1.830000e-72 283.0
23 TraesCS2B01G192000 chr3B 91.753 194 14 2 627 818 817585433 817585626 5.110000e-68 268.0
24 TraesCS2B01G192000 chr4B 92.857 182 10 3 633 811 666660159 666660340 8.560000e-66 261.0
25 TraesCS2B01G192000 chr4B 92.818 181 10 2 633 811 666696785 666696964 3.080000e-65 259.0
26 TraesCS2B01G192000 chr6B 93.220 177 11 1 635 810 624228692 624228868 3.080000e-65 259.0
27 TraesCS2B01G192000 chr6B 97.143 140 3 1 2910 3049 716312957 716312819 5.190000e-58 235.0
28 TraesCS2B01G192000 chr5B 92.308 182 11 3 630 809 532890473 532890293 3.980000e-64 255.0
29 TraesCS2B01G192000 chr5B 89.423 208 15 6 619 823 626169594 626169391 3.980000e-64 255.0
30 TraesCS2B01G192000 chr5B 89.423 208 15 6 619 823 626180993 626180790 3.980000e-64 255.0
31 TraesCS2B01G192000 chr5B 97.692 130 3 0 2912 3041 476637936 476638065 1.120000e-54 224.0
32 TraesCS2B01G192000 chr5B 96.992 133 4 0 2910 3042 538274708 538274840 1.120000e-54 224.0
33 TraesCS2B01G192000 chr5B 96.296 135 5 0 2907 3041 555175595 555175729 4.040000e-54 222.0
34 TraesCS2B01G192000 chr4A 97.710 131 3 0 2913 3043 589667296 589667166 3.120000e-55 226.0
35 TraesCS2B01G192000 chr6D 95.070 142 5 2 2912 3052 323285531 323285671 4.040000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G192000 chr2B 167474838 167477948 3110 True 5746.000 5746 100.00000 1 3111 1 chr2B.!!$R2 3110
1 TraesCS2B01G192000 chr2A 118464162 118466521 2359 True 796.250 2353 92.23475 371 3111 4 chr2A.!!$R1 2740
2 TraesCS2B01G192000 chr2D 117123646 117126174 2528 True 891.675 2303 89.76575 263 3109 4 chr2D.!!$R1 2846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.035152 CAGCAGACCCCTAATGTGCA 60.035 55.0 0.0 0.0 38.76 4.57 F
75 76 0.035317 TGCAGCACCTAACACTCAGG 59.965 55.0 0.0 0.0 39.25 3.86 F
687 705 0.037232 ACACGCTCCTTCCAGCTAAC 60.037 55.0 0.0 0.0 37.25 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1065 1107 0.252103 ACCTCCATGTCCCTACACGT 60.252 55.000 0.00 0.0 38.78 4.49 R
1069 1111 1.527370 GCCACCTCCATGTCCCTAC 59.473 63.158 0.00 0.0 0.00 3.18 R
2303 2377 0.032952 CGAGTTGGACTCCGGTGAAA 59.967 55.000 11.17 0.0 42.12 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.730116 TCATCCAGCAGACCCCTAA 57.270 52.632 0.00 0.00 0.00 2.69
19 20 2.196742 TCATCCAGCAGACCCCTAAT 57.803 50.000 0.00 0.00 0.00 1.73
20 21 1.770658 TCATCCAGCAGACCCCTAATG 59.229 52.381 0.00 0.00 0.00 1.90
21 22 1.492176 CATCCAGCAGACCCCTAATGT 59.508 52.381 0.00 0.00 0.00 2.71
22 23 0.911769 TCCAGCAGACCCCTAATGTG 59.088 55.000 0.00 0.00 0.00 3.21
23 24 0.749454 CCAGCAGACCCCTAATGTGC 60.749 60.000 0.00 0.00 36.63 4.57
24 25 0.035152 CAGCAGACCCCTAATGTGCA 60.035 55.000 0.00 0.00 38.76 4.57
25 26 0.254178 AGCAGACCCCTAATGTGCAG 59.746 55.000 0.00 0.00 38.76 4.41
26 27 1.379642 GCAGACCCCTAATGTGCAGC 61.380 60.000 0.00 0.00 36.41 5.25
27 28 0.254178 CAGACCCCTAATGTGCAGCT 59.746 55.000 0.00 0.00 0.00 4.24
28 29 0.543749 AGACCCCTAATGTGCAGCTC 59.456 55.000 0.00 0.00 0.00 4.09
29 30 0.464554 GACCCCTAATGTGCAGCTCC 60.465 60.000 0.00 0.00 0.00 4.70
30 31 0.916358 ACCCCTAATGTGCAGCTCCT 60.916 55.000 0.00 0.00 0.00 3.69
31 32 0.465097 CCCCTAATGTGCAGCTCCTG 60.465 60.000 0.00 0.00 34.12 3.86
32 33 0.543277 CCCTAATGTGCAGCTCCTGA 59.457 55.000 0.00 0.00 32.44 3.86
33 34 1.661341 CCTAATGTGCAGCTCCTGAC 58.339 55.000 0.00 0.00 32.44 3.51
34 35 1.065926 CCTAATGTGCAGCTCCTGACA 60.066 52.381 0.00 0.00 32.44 3.58
35 36 2.277969 CTAATGTGCAGCTCCTGACAG 58.722 52.381 0.00 0.00 32.44 3.51
36 37 0.959372 AATGTGCAGCTCCTGACAGC 60.959 55.000 0.00 0.00 39.99 4.40
37 38 2.031616 GTGCAGCTCCTGACAGCA 59.968 61.111 0.00 0.00 42.40 4.41
38 39 2.033755 GTGCAGCTCCTGACAGCAG 61.034 63.158 0.00 0.00 42.40 4.24
52 53 4.457496 GCAGGGCGCTGCACTCTA 62.457 66.667 41.02 0.00 38.16 2.43
53 54 2.510238 CAGGGCGCTGCACTCTAC 60.510 66.667 18.62 0.00 38.16 2.59
54 55 3.775654 AGGGCGCTGCACTCTACC 61.776 66.667 7.64 0.00 38.16 3.18
56 57 4.436998 GGCGCTGCACTCTACCGT 62.437 66.667 7.64 0.00 0.00 4.83
57 58 3.181967 GCGCTGCACTCTACCGTG 61.182 66.667 0.00 0.00 37.94 4.94
63 64 3.862124 CACTCTACCGTGCAGCAC 58.138 61.111 16.21 16.21 0.00 4.40
64 65 1.738099 CACTCTACCGTGCAGCACC 60.738 63.158 20.16 2.47 0.00 5.01
65 66 1.908793 ACTCTACCGTGCAGCACCT 60.909 57.895 20.16 7.74 0.00 4.00
66 67 0.611062 ACTCTACCGTGCAGCACCTA 60.611 55.000 20.16 8.50 0.00 3.08
67 68 0.530744 CTCTACCGTGCAGCACCTAA 59.469 55.000 20.16 4.17 0.00 2.69
68 69 0.245539 TCTACCGTGCAGCACCTAAC 59.754 55.000 20.16 0.00 0.00 2.34
69 70 0.037697 CTACCGTGCAGCACCTAACA 60.038 55.000 20.16 0.21 0.00 2.41
70 71 0.320073 TACCGTGCAGCACCTAACAC 60.320 55.000 20.16 0.00 0.00 3.32
71 72 1.301716 CCGTGCAGCACCTAACACT 60.302 57.895 20.16 0.00 0.00 3.55
72 73 1.291877 CCGTGCAGCACCTAACACTC 61.292 60.000 20.16 0.00 0.00 3.51
73 74 0.599991 CGTGCAGCACCTAACACTCA 60.600 55.000 20.16 0.00 0.00 3.41
74 75 1.151668 GTGCAGCACCTAACACTCAG 58.848 55.000 15.27 0.00 0.00 3.35
75 76 0.035317 TGCAGCACCTAACACTCAGG 59.965 55.000 0.00 0.00 39.25 3.86
76 77 1.301677 GCAGCACCTAACACTCAGGC 61.302 60.000 0.00 0.00 36.57 4.85
77 78 1.016130 CAGCACCTAACACTCAGGCG 61.016 60.000 0.00 0.00 36.57 5.52
78 79 2.391389 GCACCTAACACTCAGGCGC 61.391 63.158 0.00 0.00 36.57 6.53
79 80 1.741770 CACCTAACACTCAGGCGCC 60.742 63.158 21.89 21.89 36.57 6.53
80 81 2.214216 ACCTAACACTCAGGCGCCA 61.214 57.895 31.54 7.98 36.57 5.69
81 82 1.741770 CCTAACACTCAGGCGCCAC 60.742 63.158 31.54 1.27 0.00 5.01
82 83 1.005037 CTAACACTCAGGCGCCACA 60.005 57.895 31.54 13.74 0.00 4.17
83 84 1.291877 CTAACACTCAGGCGCCACAC 61.292 60.000 31.54 0.00 0.00 3.82
84 85 2.725203 TAACACTCAGGCGCCACACC 62.725 60.000 31.54 0.00 0.00 4.16
85 86 4.320456 CACTCAGGCGCCACACCT 62.320 66.667 31.54 3.61 38.35 4.00
97 98 3.233980 ACACCTGTGAGCGCCTGA 61.234 61.111 2.29 0.00 0.00 3.86
98 99 2.267006 CACCTGTGAGCGCCTGAT 59.733 61.111 2.29 0.00 0.00 2.90
99 100 2.104859 CACCTGTGAGCGCCTGATG 61.105 63.158 2.29 0.00 0.00 3.07
100 101 2.513204 CCTGTGAGCGCCTGATGG 60.513 66.667 2.29 0.00 0.00 3.51
110 111 2.280660 CCTGATGGCTAGCCGCTG 60.281 66.667 28.28 23.31 39.42 5.18
111 112 2.971413 CTGATGGCTAGCCGCTGC 60.971 66.667 28.28 17.01 39.42 5.25
112 113 3.745240 CTGATGGCTAGCCGCTGCA 62.745 63.158 28.28 20.31 41.13 4.41
113 114 3.275338 GATGGCTAGCCGCTGCAC 61.275 66.667 28.28 11.75 41.13 4.57
114 115 3.746949 GATGGCTAGCCGCTGCACT 62.747 63.158 28.28 6.94 41.13 4.40
115 116 2.369257 GATGGCTAGCCGCTGCACTA 62.369 60.000 28.28 9.01 41.13 2.74
116 117 2.586357 GGCTAGCCGCTGCACTAC 60.586 66.667 20.16 0.00 41.13 2.73
117 118 2.184322 GCTAGCCGCTGCACTACA 59.816 61.111 2.29 0.00 41.13 2.74
118 119 2.167861 GCTAGCCGCTGCACTACAC 61.168 63.158 2.29 0.00 41.13 2.90
119 120 1.513158 CTAGCCGCTGCACTACACT 59.487 57.895 2.16 0.00 41.13 3.55
120 121 0.803768 CTAGCCGCTGCACTACACTG 60.804 60.000 2.16 0.00 41.13 3.66
121 122 1.532604 TAGCCGCTGCACTACACTGT 61.533 55.000 2.16 0.00 41.13 3.55
122 123 2.671177 GCCGCTGCACTACACTGTG 61.671 63.158 6.19 6.19 40.62 3.66
128 129 2.856032 CACTACACTGTGCAGCGC 59.144 61.111 7.90 0.00 0.00 5.92
129 130 2.357517 ACTACACTGTGCAGCGCC 60.358 61.111 2.29 0.00 0.00 6.53
130 131 2.047844 CTACACTGTGCAGCGCCT 60.048 61.111 2.29 0.00 0.00 5.52
131 132 1.215382 CTACACTGTGCAGCGCCTA 59.785 57.895 2.29 0.00 0.00 3.93
132 133 0.803768 CTACACTGTGCAGCGCCTAG 60.804 60.000 2.29 0.00 0.00 3.02
144 145 2.588027 GCGCCTAGCTCTAAGAAGTT 57.412 50.000 0.00 0.00 44.04 2.66
145 146 2.197577 GCGCCTAGCTCTAAGAAGTTG 58.802 52.381 0.00 0.00 44.04 3.16
146 147 2.197577 CGCCTAGCTCTAAGAAGTTGC 58.802 52.381 0.00 0.00 0.00 4.17
147 148 2.417379 CGCCTAGCTCTAAGAAGTTGCA 60.417 50.000 0.00 0.00 0.00 4.08
148 149 2.933260 GCCTAGCTCTAAGAAGTTGCAC 59.067 50.000 0.00 0.00 0.00 4.57
149 150 3.617531 GCCTAGCTCTAAGAAGTTGCACA 60.618 47.826 0.00 0.00 0.00 4.57
150 151 4.180057 CCTAGCTCTAAGAAGTTGCACAG 58.820 47.826 0.00 0.00 0.00 3.66
151 152 3.760580 AGCTCTAAGAAGTTGCACAGT 57.239 42.857 0.00 0.00 0.00 3.55
152 153 4.873746 AGCTCTAAGAAGTTGCACAGTA 57.126 40.909 0.00 0.00 0.00 2.74
153 154 4.815269 AGCTCTAAGAAGTTGCACAGTAG 58.185 43.478 0.00 0.00 0.00 2.57
154 155 4.524714 AGCTCTAAGAAGTTGCACAGTAGA 59.475 41.667 0.00 0.00 0.00 2.59
155 156 4.862018 GCTCTAAGAAGTTGCACAGTAGAG 59.138 45.833 9.85 9.85 37.32 2.43
156 157 5.565834 GCTCTAAGAAGTTGCACAGTAGAGT 60.566 44.000 13.36 0.00 36.85 3.24
157 158 5.773575 TCTAAGAAGTTGCACAGTAGAGTG 58.226 41.667 0.00 0.00 42.37 3.51
164 165 2.832931 CACAGTAGAGTGCAGCACC 58.167 57.895 22.41 13.37 34.49 5.01
165 166 0.319728 CACAGTAGAGTGCAGCACCT 59.680 55.000 22.41 19.47 34.49 4.00
166 167 1.546029 CACAGTAGAGTGCAGCACCTA 59.454 52.381 22.41 18.49 34.49 3.08
167 168 2.029020 CACAGTAGAGTGCAGCACCTAA 60.029 50.000 22.41 4.52 34.49 2.69
168 169 2.028930 ACAGTAGAGTGCAGCACCTAAC 60.029 50.000 22.41 16.32 34.49 2.34
169 170 2.232452 CAGTAGAGTGCAGCACCTAACT 59.768 50.000 22.41 18.20 34.49 2.24
170 171 2.494073 AGTAGAGTGCAGCACCTAACTC 59.506 50.000 22.41 12.46 39.47 3.01
171 172 1.638529 AGAGTGCAGCACCTAACTCT 58.361 50.000 22.41 14.58 43.48 3.24
172 173 1.548269 AGAGTGCAGCACCTAACTCTC 59.452 52.381 22.41 10.99 44.70 3.20
173 174 0.244994 AGTGCAGCACCTAACTCTCG 59.755 55.000 22.41 0.00 34.49 4.04
174 175 0.737715 GTGCAGCACCTAACTCTCGG 60.738 60.000 15.27 0.00 0.00 4.63
175 176 1.153549 GCAGCACCTAACTCTCGGG 60.154 63.158 0.00 0.00 0.00 5.14
176 177 1.153549 CAGCACCTAACTCTCGGGC 60.154 63.158 0.00 0.00 0.00 6.13
177 178 1.305381 AGCACCTAACTCTCGGGCT 60.305 57.895 0.00 0.00 0.00 5.19
178 179 1.142097 GCACCTAACTCTCGGGCTC 59.858 63.158 0.00 0.00 0.00 4.70
179 180 1.324005 GCACCTAACTCTCGGGCTCT 61.324 60.000 0.00 0.00 0.00 4.09
180 181 0.457851 CACCTAACTCTCGGGCTCTG 59.542 60.000 0.00 0.00 0.00 3.35
181 182 1.324005 ACCTAACTCTCGGGCTCTGC 61.324 60.000 0.00 0.00 0.00 4.26
182 183 1.323271 CCTAACTCTCGGGCTCTGCA 61.323 60.000 0.00 0.00 0.00 4.41
183 184 0.179124 CTAACTCTCGGGCTCTGCAC 60.179 60.000 0.00 0.00 0.00 4.57
184 185 0.898326 TAACTCTCGGGCTCTGCACA 60.898 55.000 0.00 0.00 0.00 4.57
185 186 1.758440 AACTCTCGGGCTCTGCACAA 61.758 55.000 0.00 0.00 0.00 3.33
186 187 1.004560 CTCTCGGGCTCTGCACAAA 60.005 57.895 0.00 0.00 0.00 2.83
187 188 0.603707 CTCTCGGGCTCTGCACAAAA 60.604 55.000 0.00 0.00 0.00 2.44
188 189 0.603707 TCTCGGGCTCTGCACAAAAG 60.604 55.000 0.00 0.00 0.00 2.27
189 190 1.580845 CTCGGGCTCTGCACAAAAGG 61.581 60.000 0.00 0.00 0.00 3.11
190 191 2.629656 CGGGCTCTGCACAAAAGGG 61.630 63.158 0.00 0.00 0.00 3.95
191 192 1.531602 GGGCTCTGCACAAAAGGGT 60.532 57.895 0.00 0.00 0.00 4.34
192 193 1.527433 GGGCTCTGCACAAAAGGGTC 61.527 60.000 0.00 0.00 0.00 4.46
193 194 0.823356 GGCTCTGCACAAAAGGGTCA 60.823 55.000 0.00 0.00 0.00 4.02
194 195 0.595095 GCTCTGCACAAAAGGGTCAG 59.405 55.000 0.00 0.00 0.00 3.51
195 196 0.595095 CTCTGCACAAAAGGGTCAGC 59.405 55.000 0.00 0.00 0.00 4.26
196 197 1.165907 TCTGCACAAAAGGGTCAGCG 61.166 55.000 0.00 0.00 0.00 5.18
197 198 2.133742 CTGCACAAAAGGGTCAGCGG 62.134 60.000 0.00 0.00 0.00 5.52
198 199 2.193536 GCACAAAAGGGTCAGCGGT 61.194 57.895 0.00 0.00 0.00 5.68
199 200 1.654220 CACAAAAGGGTCAGCGGTG 59.346 57.895 8.67 8.67 0.00 4.94
200 201 1.101049 CACAAAAGGGTCAGCGGTGT 61.101 55.000 15.22 0.00 0.00 4.16
201 202 1.101049 ACAAAAGGGTCAGCGGTGTG 61.101 55.000 15.22 6.05 0.00 3.82
202 203 0.817634 CAAAAGGGTCAGCGGTGTGA 60.818 55.000 15.22 0.00 0.00 3.58
203 204 0.106918 AAAAGGGTCAGCGGTGTGAA 60.107 50.000 15.22 0.00 0.00 3.18
204 205 0.106918 AAAGGGTCAGCGGTGTGAAA 60.107 50.000 15.22 0.00 0.00 2.69
205 206 0.110486 AAGGGTCAGCGGTGTGAAAT 59.890 50.000 15.22 0.00 0.00 2.17
206 207 0.110486 AGGGTCAGCGGTGTGAAATT 59.890 50.000 15.22 0.00 0.00 1.82
207 208 0.958822 GGGTCAGCGGTGTGAAATTT 59.041 50.000 15.22 0.00 0.00 1.82
208 209 1.339929 GGGTCAGCGGTGTGAAATTTT 59.660 47.619 15.22 0.00 0.00 1.82
209 210 2.223947 GGGTCAGCGGTGTGAAATTTTT 60.224 45.455 15.22 0.00 0.00 1.94
231 232 8.594881 TTTTTCAAAAACAGTTTAGCTTGTGA 57.405 26.923 0.00 0.00 0.00 3.58
232 233 8.594881 TTTTCAAAAACAGTTTAGCTTGTGAA 57.405 26.923 0.00 1.08 0.00 3.18
233 234 8.594881 TTTCAAAAACAGTTTAGCTTGTGAAA 57.405 26.923 0.00 6.44 0.00 2.69
234 235 8.770438 TTCAAAAACAGTTTAGCTTGTGAAAT 57.230 26.923 0.00 0.00 0.00 2.17
235 236 9.862371 TTCAAAAACAGTTTAGCTTGTGAAATA 57.138 25.926 0.00 0.00 0.00 1.40
236 237 9.296400 TCAAAAACAGTTTAGCTTGTGAAATAC 57.704 29.630 0.00 0.00 0.00 1.89
237 238 9.301153 CAAAAACAGTTTAGCTTGTGAAATACT 57.699 29.630 0.00 0.00 0.00 2.12
238 239 9.869757 AAAAACAGTTTAGCTTGTGAAATACTT 57.130 25.926 0.00 0.00 0.00 2.24
239 240 9.869757 AAAACAGTTTAGCTTGTGAAATACTTT 57.130 25.926 0.00 0.00 0.00 2.66
240 241 9.516314 AAACAGTTTAGCTTGTGAAATACTTTC 57.484 29.630 0.00 0.00 40.08 2.62
241 242 7.352739 ACAGTTTAGCTTGTGAAATACTTTCG 58.647 34.615 0.00 0.00 42.55 3.46
249 250 4.849111 GTGAAATACTTTCGCTCTGAGG 57.151 45.455 6.83 0.00 44.55 3.86
250 251 4.246458 GTGAAATACTTTCGCTCTGAGGT 58.754 43.478 6.83 0.00 44.55 3.85
251 252 4.327627 GTGAAATACTTTCGCTCTGAGGTC 59.672 45.833 6.83 0.00 44.55 3.85
252 253 4.021456 TGAAATACTTTCGCTCTGAGGTCA 60.021 41.667 6.83 0.00 42.55 4.02
253 254 4.537135 AATACTTTCGCTCTGAGGTCAA 57.463 40.909 6.83 0.00 0.00 3.18
254 255 2.910688 ACTTTCGCTCTGAGGTCAAA 57.089 45.000 6.83 0.00 0.00 2.69
255 256 3.409026 ACTTTCGCTCTGAGGTCAAAT 57.591 42.857 6.83 0.00 0.00 2.32
256 257 3.330267 ACTTTCGCTCTGAGGTCAAATC 58.670 45.455 6.83 0.00 0.00 2.17
257 258 3.007398 ACTTTCGCTCTGAGGTCAAATCT 59.993 43.478 6.83 0.00 0.00 2.40
258 259 2.662006 TCGCTCTGAGGTCAAATCTG 57.338 50.000 6.83 0.00 0.00 2.90
259 260 1.895798 TCGCTCTGAGGTCAAATCTGT 59.104 47.619 6.83 0.00 0.00 3.41
260 261 2.094494 TCGCTCTGAGGTCAAATCTGTC 60.094 50.000 6.83 0.00 0.00 3.51
261 262 2.353109 CGCTCTGAGGTCAAATCTGTCA 60.353 50.000 6.83 0.00 0.00 3.58
262 263 3.668447 GCTCTGAGGTCAAATCTGTCAA 58.332 45.455 6.83 0.00 0.00 3.18
263 264 4.260170 GCTCTGAGGTCAAATCTGTCAAT 58.740 43.478 6.83 0.00 0.00 2.57
264 265 4.699257 GCTCTGAGGTCAAATCTGTCAATT 59.301 41.667 6.83 0.00 0.00 2.32
265 266 5.182760 GCTCTGAGGTCAAATCTGTCAATTT 59.817 40.000 6.83 0.00 0.00 1.82
266 267 6.294397 GCTCTGAGGTCAAATCTGTCAATTTT 60.294 38.462 6.83 0.00 0.00 1.82
267 268 6.973843 TCTGAGGTCAAATCTGTCAATTTTG 58.026 36.000 2.22 2.22 0.00 2.44
274 275 7.414984 GGTCAAATCTGTCAATTTTGCCAAAAA 60.415 33.333 6.70 0.00 39.53 1.94
301 302 7.678207 TCCTTTATTTTGGGGTACTGTTTTT 57.322 32.000 0.00 0.00 0.00 1.94
327 328 6.437793 TGCGGAGGGAAAATTTTAATCCTTAA 59.562 34.615 18.90 7.92 33.61 1.85
347 348 8.611257 TCCTTAATCTCTCCAGAAAAATTACCA 58.389 33.333 0.00 0.00 30.24 3.25
416 432 1.407979 CTACCCGCTTATTCCAGACGT 59.592 52.381 0.00 0.00 0.00 4.34
467 483 8.764524 AAGAAATACCATTCATCTCGCTATAC 57.235 34.615 0.00 0.00 0.00 1.47
473 489 5.221521 ACCATTCATCTCGCTATACACACAT 60.222 40.000 0.00 0.00 0.00 3.21
493 509 6.211184 ACACATATTCACCAACCAATTCATGT 59.789 34.615 0.00 0.00 0.00 3.21
550 568 5.401376 GGAACAAAAGAGCGTGTTATTTTCC 59.599 40.000 0.00 0.00 38.07 3.13
639 657 6.701709 CGTATAAGACGCACATCAAAAATG 57.298 37.500 0.00 0.00 46.27 2.32
640 658 5.169561 CGTATAAGACGCACATCAAAAATGC 59.830 40.000 0.00 0.00 46.27 3.56
641 659 3.648339 AAGACGCACATCAAAAATGCT 57.352 38.095 0.00 0.00 37.20 3.79
642 660 4.764679 AAGACGCACATCAAAAATGCTA 57.235 36.364 0.00 0.00 37.20 3.49
643 661 4.346734 AGACGCACATCAAAAATGCTAG 57.653 40.909 0.00 0.00 37.20 3.42
644 662 4.002982 AGACGCACATCAAAAATGCTAGA 58.997 39.130 0.00 0.00 37.20 2.43
645 663 4.083581 ACGCACATCAAAAATGCTAGAC 57.916 40.909 0.00 0.00 37.20 2.59
646 664 3.501828 ACGCACATCAAAAATGCTAGACA 59.498 39.130 0.00 0.00 37.20 3.41
647 665 4.156556 ACGCACATCAAAAATGCTAGACAT 59.843 37.500 0.00 0.00 42.30 3.06
648 666 5.353956 ACGCACATCAAAAATGCTAGACATA 59.646 36.000 0.00 0.00 38.34 2.29
649 667 5.678483 CGCACATCAAAAATGCTAGACATAC 59.322 40.000 0.00 0.00 38.34 2.39
650 668 6.554419 GCACATCAAAAATGCTAGACATACA 58.446 36.000 0.00 0.00 38.34 2.29
651 669 7.028962 GCACATCAAAAATGCTAGACATACAA 58.971 34.615 0.00 0.00 38.34 2.41
652 670 7.541783 GCACATCAAAAATGCTAGACATACAAA 59.458 33.333 0.00 0.00 38.34 2.83
653 671 9.409312 CACATCAAAAATGCTAGACATACAAAA 57.591 29.630 0.00 0.00 38.34 2.44
654 672 9.979578 ACATCAAAAATGCTAGACATACAAAAA 57.020 25.926 0.00 0.00 38.34 1.94
661 679 9.893305 AAATGCTAGACATACAAAAACTTACAC 57.107 29.630 0.00 0.00 38.34 2.90
662 680 7.112528 TGCTAGACATACAAAAACTTACACG 57.887 36.000 0.00 0.00 0.00 4.49
663 681 6.013689 GCTAGACATACAAAAACTTACACGC 58.986 40.000 0.00 0.00 0.00 5.34
664 682 6.128634 GCTAGACATACAAAAACTTACACGCT 60.129 38.462 0.00 0.00 0.00 5.07
665 683 6.613755 AGACATACAAAAACTTACACGCTT 57.386 33.333 0.00 0.00 0.00 4.68
666 684 7.023197 AGACATACAAAAACTTACACGCTTT 57.977 32.000 0.00 0.00 0.00 3.51
667 685 7.477494 AGACATACAAAAACTTACACGCTTTT 58.523 30.769 0.00 0.00 0.00 2.27
668 686 8.614346 AGACATACAAAAACTTACACGCTTTTA 58.386 29.630 0.00 0.00 0.00 1.52
669 687 8.551122 ACATACAAAAACTTACACGCTTTTAC 57.449 30.769 0.00 0.00 0.00 2.01
670 688 8.182881 ACATACAAAAACTTACACGCTTTTACA 58.817 29.630 0.00 0.00 0.00 2.41
671 689 6.858104 ACAAAAACTTACACGCTTTTACAC 57.142 33.333 0.00 0.00 0.00 2.90
672 690 5.508922 ACAAAAACTTACACGCTTTTACACG 59.491 36.000 0.00 0.00 0.00 4.49
673 691 2.936050 ACTTACACGCTTTTACACGC 57.064 45.000 0.00 0.00 0.00 5.34
674 692 2.476821 ACTTACACGCTTTTACACGCT 58.523 42.857 0.00 0.00 0.00 5.07
675 693 2.473984 ACTTACACGCTTTTACACGCTC 59.526 45.455 0.00 0.00 0.00 5.03
676 694 1.421382 TACACGCTTTTACACGCTCC 58.579 50.000 0.00 0.00 0.00 4.70
677 695 0.249741 ACACGCTTTTACACGCTCCT 60.250 50.000 0.00 0.00 0.00 3.69
678 696 0.865769 CACGCTTTTACACGCTCCTT 59.134 50.000 0.00 0.00 0.00 3.36
679 697 1.136336 CACGCTTTTACACGCTCCTTC 60.136 52.381 0.00 0.00 0.00 3.46
680 698 0.442699 CGCTTTTACACGCTCCTTCC 59.557 55.000 0.00 0.00 0.00 3.46
681 699 1.519408 GCTTTTACACGCTCCTTCCA 58.481 50.000 0.00 0.00 0.00 3.53
682 700 1.464997 GCTTTTACACGCTCCTTCCAG 59.535 52.381 0.00 0.00 0.00 3.86
683 701 1.464997 CTTTTACACGCTCCTTCCAGC 59.535 52.381 0.00 0.00 35.90 4.85
684 702 0.685097 TTTACACGCTCCTTCCAGCT 59.315 50.000 0.00 0.00 37.25 4.24
685 703 1.552578 TTACACGCTCCTTCCAGCTA 58.447 50.000 0.00 0.00 37.25 3.32
686 704 1.552578 TACACGCTCCTTCCAGCTAA 58.447 50.000 0.00 0.00 37.25 3.09
687 705 0.037232 ACACGCTCCTTCCAGCTAAC 60.037 55.000 0.00 0.00 37.25 2.34
688 706 0.037326 CACGCTCCTTCCAGCTAACA 60.037 55.000 0.00 0.00 37.25 2.41
689 707 0.685097 ACGCTCCTTCCAGCTAACAA 59.315 50.000 0.00 0.00 37.25 2.83
690 708 1.079503 CGCTCCTTCCAGCTAACAAC 58.920 55.000 0.00 0.00 37.25 3.32
691 709 1.454201 GCTCCTTCCAGCTAACAACC 58.546 55.000 0.00 0.00 36.38 3.77
692 710 1.271379 GCTCCTTCCAGCTAACAACCA 60.271 52.381 0.00 0.00 36.38 3.67
693 711 2.814097 GCTCCTTCCAGCTAACAACCAA 60.814 50.000 0.00 0.00 36.38 3.67
694 712 3.690460 CTCCTTCCAGCTAACAACCAAT 58.310 45.455 0.00 0.00 0.00 3.16
695 713 3.686016 TCCTTCCAGCTAACAACCAATC 58.314 45.455 0.00 0.00 0.00 2.67
696 714 3.073798 TCCTTCCAGCTAACAACCAATCA 59.926 43.478 0.00 0.00 0.00 2.57
697 715 3.191371 CCTTCCAGCTAACAACCAATCAC 59.809 47.826 0.00 0.00 0.00 3.06
698 716 3.500448 TCCAGCTAACAACCAATCACA 57.500 42.857 0.00 0.00 0.00 3.58
699 717 3.826524 TCCAGCTAACAACCAATCACAA 58.173 40.909 0.00 0.00 0.00 3.33
700 718 4.211125 TCCAGCTAACAACCAATCACAAA 58.789 39.130 0.00 0.00 0.00 2.83
701 719 4.037446 TCCAGCTAACAACCAATCACAAAC 59.963 41.667 0.00 0.00 0.00 2.93
702 720 4.298332 CAGCTAACAACCAATCACAAACC 58.702 43.478 0.00 0.00 0.00 3.27
703 721 4.037923 CAGCTAACAACCAATCACAAACCT 59.962 41.667 0.00 0.00 0.00 3.50
704 722 4.278419 AGCTAACAACCAATCACAAACCTC 59.722 41.667 0.00 0.00 0.00 3.85
705 723 4.558697 GCTAACAACCAATCACAAACCTCC 60.559 45.833 0.00 0.00 0.00 4.30
706 724 2.316108 ACAACCAATCACAAACCTCCC 58.684 47.619 0.00 0.00 0.00 4.30
707 725 1.618343 CAACCAATCACAAACCTCCCC 59.382 52.381 0.00 0.00 0.00 4.81
708 726 0.114364 ACCAATCACAAACCTCCCCC 59.886 55.000 0.00 0.00 0.00 5.40
731 749 2.426522 TGATTTTCAAGAGGTGAGCCG 58.573 47.619 0.00 0.00 37.61 5.52
732 750 1.131315 GATTTTCAAGAGGTGAGCCGC 59.869 52.381 0.00 0.00 37.61 6.53
734 752 0.320771 TTTCAAGAGGTGAGCCGCTC 60.321 55.000 13.81 13.81 44.34 5.03
735 753 2.125350 CAAGAGGTGAGCCGCTCC 60.125 66.667 17.81 8.88 44.34 4.70
736 754 3.764466 AAGAGGTGAGCCGCTCCG 61.764 66.667 17.81 0.00 44.34 4.63
745 763 3.917760 GCCGCTCCGCTCACCTAT 61.918 66.667 0.00 0.00 0.00 2.57
746 764 2.815308 CCGCTCCGCTCACCTATT 59.185 61.111 0.00 0.00 0.00 1.73
747 765 1.592669 CCGCTCCGCTCACCTATTG 60.593 63.158 0.00 0.00 0.00 1.90
748 766 1.437573 CGCTCCGCTCACCTATTGA 59.562 57.895 0.00 0.00 0.00 2.57
749 767 0.872021 CGCTCCGCTCACCTATTGAC 60.872 60.000 0.00 0.00 0.00 3.18
750 768 0.530870 GCTCCGCTCACCTATTGACC 60.531 60.000 0.00 0.00 0.00 4.02
751 769 0.824109 CTCCGCTCACCTATTGACCA 59.176 55.000 0.00 0.00 0.00 4.02
752 770 1.207089 CTCCGCTCACCTATTGACCAA 59.793 52.381 0.00 0.00 0.00 3.67
753 771 1.837439 TCCGCTCACCTATTGACCAAT 59.163 47.619 0.64 0.64 34.93 3.16
754 772 2.238646 TCCGCTCACCTATTGACCAATT 59.761 45.455 0.17 0.00 32.50 2.32
755 773 3.452990 TCCGCTCACCTATTGACCAATTA 59.547 43.478 0.17 0.00 32.50 1.40
756 774 4.080807 TCCGCTCACCTATTGACCAATTAA 60.081 41.667 0.17 0.00 32.50 1.40
757 775 4.273480 CCGCTCACCTATTGACCAATTAAG 59.727 45.833 0.17 0.00 32.50 1.85
758 776 4.273480 CGCTCACCTATTGACCAATTAAGG 59.727 45.833 9.06 9.06 34.32 2.69
759 777 5.193679 GCTCACCTATTGACCAATTAAGGT 58.806 41.667 10.07 10.07 46.82 3.50
760 778 5.652452 GCTCACCTATTGACCAATTAAGGTT 59.348 40.000 12.26 0.38 43.38 3.50
761 779 6.826741 GCTCACCTATTGACCAATTAAGGTTA 59.173 38.462 12.26 6.49 43.38 2.85
762 780 7.338449 GCTCACCTATTGACCAATTAAGGTTAA 59.662 37.037 12.26 0.00 43.38 2.01
763 781 8.570068 TCACCTATTGACCAATTAAGGTTAAC 57.430 34.615 12.26 0.00 43.38 2.01
764 782 7.612633 TCACCTATTGACCAATTAAGGTTAACC 59.387 37.037 17.41 17.41 43.38 2.85
765 783 7.394923 CACCTATTGACCAATTAAGGTTAACCA 59.605 37.037 26.26 6.51 43.38 3.67
766 784 8.119891 ACCTATTGACCAATTAAGGTTAACCAT 58.880 33.333 26.26 17.35 43.38 3.55
767 785 8.630037 CCTATTGACCAATTAAGGTTAACCATC 58.370 37.037 26.26 10.34 43.38 3.51
768 786 6.844097 TTGACCAATTAAGGTTAACCATCC 57.156 37.500 26.26 0.00 43.38 3.51
769 787 6.147437 TGACCAATTAAGGTTAACCATCCT 57.853 37.500 26.26 10.13 43.38 3.24
770 788 7.273457 TGACCAATTAAGGTTAACCATCCTA 57.727 36.000 26.26 9.18 43.38 2.94
771 789 7.878495 TGACCAATTAAGGTTAACCATCCTAT 58.122 34.615 26.26 9.23 43.38 2.57
772 790 9.005318 TGACCAATTAAGGTTAACCATCCTATA 57.995 33.333 26.26 6.77 43.38 1.31
773 791 9.856162 GACCAATTAAGGTTAACCATCCTATAA 57.144 33.333 26.26 14.16 43.38 0.98
778 796 8.756486 TTAAGGTTAACCATCCTATAAAAGCC 57.244 34.615 26.26 0.00 38.89 4.35
779 797 6.592207 AGGTTAACCATCCTATAAAAGCCT 57.408 37.500 26.26 0.00 38.89 4.58
780 798 6.365520 AGGTTAACCATCCTATAAAAGCCTG 58.634 40.000 26.26 0.00 38.89 4.85
781 799 6.069029 AGGTTAACCATCCTATAAAAGCCTGT 60.069 38.462 26.26 0.00 38.89 4.00
782 800 7.128263 AGGTTAACCATCCTATAAAAGCCTGTA 59.872 37.037 26.26 0.00 38.89 2.74
783 801 7.776500 GGTTAACCATCCTATAAAAGCCTGTAA 59.224 37.037 20.12 0.00 35.64 2.41
784 802 9.181061 GTTAACCATCCTATAAAAGCCTGTAAA 57.819 33.333 0.00 0.00 0.00 2.01
785 803 9.930158 TTAACCATCCTATAAAAGCCTGTAAAT 57.070 29.630 0.00 0.00 0.00 1.40
786 804 7.823745 ACCATCCTATAAAAGCCTGTAAATG 57.176 36.000 0.00 0.00 0.00 2.32
787 805 6.777580 ACCATCCTATAAAAGCCTGTAAATGG 59.222 38.462 0.00 0.00 35.89 3.16
788 806 6.777580 CCATCCTATAAAAGCCTGTAAATGGT 59.222 38.462 0.00 0.00 0.00 3.55
789 807 7.287696 CCATCCTATAAAAGCCTGTAAATGGTT 59.712 37.037 0.00 0.00 0.00 3.67
790 808 8.695456 CATCCTATAAAAGCCTGTAAATGGTTT 58.305 33.333 0.00 0.00 0.00 3.27
791 809 8.062065 TCCTATAAAAGCCTGTAAATGGTTTG 57.938 34.615 0.00 0.00 0.00 2.93
792 810 7.672239 TCCTATAAAAGCCTGTAAATGGTTTGT 59.328 33.333 0.00 0.00 0.00 2.83
793 811 8.962679 CCTATAAAAGCCTGTAAATGGTTTGTA 58.037 33.333 0.00 0.00 0.00 2.41
794 812 9.783256 CTATAAAAGCCTGTAAATGGTTTGTAC 57.217 33.333 0.00 0.00 0.00 2.90
795 813 4.759516 AAGCCTGTAAATGGTTTGTACG 57.240 40.909 0.00 0.00 0.00 3.67
796 814 3.746940 AGCCTGTAAATGGTTTGTACGT 58.253 40.909 0.00 0.00 0.00 3.57
797 815 3.500680 AGCCTGTAAATGGTTTGTACGTG 59.499 43.478 0.00 0.00 0.00 4.49
798 816 3.251487 GCCTGTAAATGGTTTGTACGTGT 59.749 43.478 0.00 0.00 0.00 4.49
799 817 4.451774 GCCTGTAAATGGTTTGTACGTGTA 59.548 41.667 0.00 0.00 0.00 2.90
800 818 5.390145 GCCTGTAAATGGTTTGTACGTGTAG 60.390 44.000 0.00 0.00 0.00 2.74
801 819 5.390145 CCTGTAAATGGTTTGTACGTGTAGC 60.390 44.000 0.00 0.00 0.00 3.58
802 820 5.055144 TGTAAATGGTTTGTACGTGTAGCA 58.945 37.500 0.00 0.00 0.00 3.49
803 821 5.701750 TGTAAATGGTTTGTACGTGTAGCAT 59.298 36.000 0.00 0.00 0.00 3.79
804 822 5.699097 AAATGGTTTGTACGTGTAGCATT 57.301 34.783 0.00 5.56 39.56 3.56
805 823 4.678509 ATGGTTTGTACGTGTAGCATTG 57.321 40.909 0.00 0.00 0.00 2.82
806 824 2.224549 TGGTTTGTACGTGTAGCATTGC 59.775 45.455 0.00 0.00 0.00 3.56
807 825 2.413634 GGTTTGTACGTGTAGCATTGCC 60.414 50.000 4.70 0.00 0.00 4.52
808 826 1.072391 TTGTACGTGTAGCATTGCCG 58.928 50.000 4.70 4.23 0.00 5.69
809 827 0.244178 TGTACGTGTAGCATTGCCGA 59.756 50.000 4.70 0.00 0.00 5.54
810 828 1.336980 TGTACGTGTAGCATTGCCGAA 60.337 47.619 4.70 0.00 0.00 4.30
811 829 1.323534 GTACGTGTAGCATTGCCGAAG 59.676 52.381 4.70 0.00 0.00 3.79
812 830 0.037697 ACGTGTAGCATTGCCGAAGA 60.038 50.000 4.70 0.00 0.00 2.87
813 831 0.370273 CGTGTAGCATTGCCGAAGAC 59.630 55.000 4.70 0.00 0.00 3.01
858 876 1.679944 GCTTTTAACGTACCCTCCCCC 60.680 57.143 0.00 0.00 0.00 5.40
1013 1037 7.596995 CGGAGGCATCTATCTTTAAAGAAGTAG 59.403 40.741 21.26 17.86 38.77 2.57
1053 1095 1.613610 CGGGGAGTGAGGAGAGGTA 59.386 63.158 0.00 0.00 0.00 3.08
1058 1100 2.158445 GGGAGTGAGGAGAGGTATAGCA 60.158 54.545 4.48 0.00 0.00 3.49
1065 1107 3.329520 GAGGAGAGGTATAGCAGAGGAGA 59.670 52.174 4.48 0.00 0.00 3.71
1069 1111 2.550606 GAGGTATAGCAGAGGAGACGTG 59.449 54.545 4.48 0.00 0.00 4.49
1070 1112 2.092321 AGGTATAGCAGAGGAGACGTGT 60.092 50.000 4.48 0.00 0.00 4.49
1071 1113 3.136077 AGGTATAGCAGAGGAGACGTGTA 59.864 47.826 4.48 0.00 0.00 2.90
1072 1114 3.499157 GGTATAGCAGAGGAGACGTGTAG 59.501 52.174 0.00 0.00 0.00 2.74
1073 1115 2.039818 TAGCAGAGGAGACGTGTAGG 57.960 55.000 0.00 0.00 0.00 3.18
1076 1118 1.096416 CAGAGGAGACGTGTAGGGAC 58.904 60.000 0.00 0.00 0.00 4.46
1403 1456 3.807538 GCCGACGAGGACTACGCA 61.808 66.667 0.00 0.00 45.00 5.24
2159 2223 0.385390 CGTTTGCTCCTGCTTGGTTT 59.615 50.000 0.00 0.00 40.48 3.27
2162 2226 0.756442 TTGCTCCTGCTTGGTTTGCT 60.756 50.000 0.00 0.00 40.48 3.91
2185 2250 6.701400 GCTCTCCTGATCTGTATTCTTTCTTC 59.299 42.308 0.00 0.00 0.00 2.87
2186 2251 7.632462 GCTCTCCTGATCTGTATTCTTTCTTCA 60.632 40.741 0.00 0.00 0.00 3.02
2290 2364 1.082104 GCCCGAAAACTCAAGCACG 60.082 57.895 0.00 0.00 0.00 5.34
2304 2378 3.665745 AAGCACGCCTTGAATTTCATT 57.334 38.095 0.00 0.00 30.99 2.57
2305 2379 3.665745 AGCACGCCTTGAATTTCATTT 57.334 38.095 0.00 0.00 0.00 2.32
2306 2380 3.578688 AGCACGCCTTGAATTTCATTTC 58.421 40.909 0.00 0.00 0.00 2.17
2307 2381 3.005684 AGCACGCCTTGAATTTCATTTCA 59.994 39.130 0.00 0.00 33.89 2.69
2308 2382 3.121778 GCACGCCTTGAATTTCATTTCAC 59.878 43.478 0.00 0.00 35.42 3.18
2309 2383 3.674753 CACGCCTTGAATTTCATTTCACC 59.325 43.478 0.00 0.00 35.42 4.02
2310 2384 2.916716 CGCCTTGAATTTCATTTCACCG 59.083 45.455 0.00 0.00 35.42 4.94
2311 2385 3.253230 GCCTTGAATTTCATTTCACCGG 58.747 45.455 0.00 0.00 35.42 5.28
2312 2386 3.056891 GCCTTGAATTTCATTTCACCGGA 60.057 43.478 9.46 0.00 35.42 5.14
2313 2387 4.737054 CCTTGAATTTCATTTCACCGGAG 58.263 43.478 9.46 0.00 35.42 4.63
2314 2388 4.218417 CCTTGAATTTCATTTCACCGGAGT 59.782 41.667 9.46 0.00 35.42 3.85
2315 2389 5.371115 TTGAATTTCATTTCACCGGAGTC 57.629 39.130 9.46 0.00 35.42 3.36
2316 2390 3.756434 TGAATTTCATTTCACCGGAGTCC 59.244 43.478 9.46 0.00 30.82 3.85
2317 2391 2.940994 TTTCATTTCACCGGAGTCCA 57.059 45.000 9.46 0.00 0.00 4.02
2318 2392 2.940994 TTCATTTCACCGGAGTCCAA 57.059 45.000 9.46 0.00 0.00 3.53
2319 2393 2.178912 TCATTTCACCGGAGTCCAAC 57.821 50.000 9.46 0.00 0.00 3.77
2329 2403 0.591659 GGAGTCCAACTCGTTTTGCC 59.408 55.000 3.60 0.00 45.96 4.52
2332 2406 1.134220 AGTCCAACTCGTTTTGCCAGA 60.134 47.619 0.00 0.00 0.00 3.86
2338 2412 0.236711 CTCGTTTTGCCAGAGCTGTG 59.763 55.000 3.32 3.32 40.80 3.66
2350 2424 1.020437 GAGCTGTGCTGCTAATTCCC 58.980 55.000 0.00 0.00 44.17 3.97
2351 2425 0.394899 AGCTGTGCTGCTAATTCCCC 60.395 55.000 0.00 0.00 42.10 4.81
2352 2426 0.394899 GCTGTGCTGCTAATTCCCCT 60.395 55.000 0.00 0.00 0.00 4.79
2507 2584 2.858158 CATGCGATGCGATGCGAT 59.142 55.556 0.00 0.00 0.00 4.58
2508 2585 1.509162 CATGCGATGCGATGCGATG 60.509 57.895 0.00 0.00 0.00 3.84
2509 2586 3.304764 ATGCGATGCGATGCGATGC 62.305 57.895 0.00 0.00 0.00 3.91
2564 2641 2.031012 TGACGCCCTGAGCTGTTG 59.969 61.111 0.00 0.00 40.39 3.33
2619 2696 3.541516 CGAACTGTCACAACTGTTTCGTC 60.542 47.826 5.77 0.00 44.59 4.20
2724 2804 7.402650 AGTTTAAAATTGATGGGGATTGGATGA 59.597 33.333 0.00 0.00 0.00 2.92
2759 2841 6.620678 CATGATTAGAGCCTTAGAGCTAGAC 58.379 44.000 0.00 0.00 45.15 2.59
2905 2996 7.199541 TGCAAAGATTCTCTTTCTTCTCAAG 57.800 36.000 0.00 0.00 42.60 3.02
2907 2998 7.933577 TGCAAAGATTCTCTTTCTTCTCAAGTA 59.066 33.333 0.00 0.00 42.60 2.24
2914 3005 7.589958 TCTCTTTCTTCTCAAGTAGACAAGT 57.410 36.000 0.00 0.00 32.51 3.16
2915 3006 8.693120 TCTCTTTCTTCTCAAGTAGACAAGTA 57.307 34.615 0.00 0.00 32.51 2.24
2916 3007 8.569641 TCTCTTTCTTCTCAAGTAGACAAGTAC 58.430 37.037 0.00 0.00 32.51 2.73
2917 3008 8.466617 TCTTTCTTCTCAAGTAGACAAGTACT 57.533 34.615 0.00 0.00 34.56 2.73
2918 3009 8.569641 TCTTTCTTCTCAAGTAGACAAGTACTC 58.430 37.037 0.00 0.00 31.73 2.59
2919 3010 6.821031 TCTTCTCAAGTAGACAAGTACTCC 57.179 41.667 0.00 0.00 31.73 3.85
2920 3011 5.711036 TCTTCTCAAGTAGACAAGTACTCCC 59.289 44.000 0.00 0.00 31.73 4.30
2921 3012 5.258216 TCTCAAGTAGACAAGTACTCCCT 57.742 43.478 0.00 0.00 31.73 4.20
2922 3013 5.254901 TCTCAAGTAGACAAGTACTCCCTC 58.745 45.833 0.00 0.00 31.73 4.30
2923 3014 4.342359 TCAAGTAGACAAGTACTCCCTCC 58.658 47.826 0.00 0.00 31.73 4.30
2924 3015 3.002038 AGTAGACAAGTACTCCCTCCG 57.998 52.381 0.00 0.00 0.00 4.63
2925 3016 2.308275 AGTAGACAAGTACTCCCTCCGT 59.692 50.000 0.00 0.00 0.00 4.69
2926 3017 1.836802 AGACAAGTACTCCCTCCGTC 58.163 55.000 0.00 0.00 0.00 4.79
2927 3018 0.816373 GACAAGTACTCCCTCCGTCC 59.184 60.000 0.00 0.00 0.00 4.79
2928 3019 0.964358 ACAAGTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
2929 3020 0.679002 CAAGTACTCCCTCCGTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
2930 3021 0.038744 AAGTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
2931 3022 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
2932 3023 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2933 3024 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2934 3025 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2935 3026 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2936 3027 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2937 3028 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2938 3029 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2939 3030 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2940 3031 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2941 3032 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2942 3033 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2943 3034 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2944 3035 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2945 3036 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2946 3037 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2947 3038 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2948 3039 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2949 3040 8.172484 CGTCCGAAAATACTTGTCATCAAAATA 58.828 33.333 0.00 0.00 32.87 1.40
2950 3041 9.834628 GTCCGAAAATACTTGTCATCAAAATAA 57.165 29.630 0.00 0.00 32.87 1.40
2960 3051 9.883142 ACTTGTCATCAAAATAAACAAAAAGGA 57.117 25.926 0.00 0.00 32.87 3.36
2998 3089 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
3006 3097 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
3012 3103 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
3015 3106 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
3016 3107 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
3017 3108 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
3018 3109 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
3019 3110 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
3020 3111 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
3027 3118 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
3028 3119 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
3029 3120 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
3030 3121 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3031 3122 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3032 3123 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3033 3124 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3034 3125 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3035 3126 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3036 3127 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3037 3128 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3038 3129 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3073 3164 2.795231 TTCTCTGGCCTGGATTTCAG 57.205 50.000 10.07 0.00 43.00 3.02
3078 3169 2.158475 TCTGGCCTGGATTTCAGTTGTT 60.158 45.455 10.07 0.00 41.83 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.770658 CATTAGGGGTCTGCTGGATGA 59.229 52.381 0.00 0.00 0.00 2.92
1 2 1.492176 ACATTAGGGGTCTGCTGGATG 59.508 52.381 0.00 0.00 0.00 3.51
2 3 1.492176 CACATTAGGGGTCTGCTGGAT 59.508 52.381 0.00 0.00 0.00 3.41
4 5 0.749454 GCACATTAGGGGTCTGCTGG 60.749 60.000 0.00 0.00 0.00 4.85
5 6 0.035152 TGCACATTAGGGGTCTGCTG 60.035 55.000 0.00 0.00 0.00 4.41
7 8 1.379642 GCTGCACATTAGGGGTCTGC 61.380 60.000 0.00 0.00 0.00 4.26
8 9 0.254178 AGCTGCACATTAGGGGTCTG 59.746 55.000 1.02 0.00 0.00 3.51
9 10 0.543749 GAGCTGCACATTAGGGGTCT 59.456 55.000 1.02 0.00 0.00 3.85
10 11 0.464554 GGAGCTGCACATTAGGGGTC 60.465 60.000 0.00 0.00 0.00 4.46
11 12 0.916358 AGGAGCTGCACATTAGGGGT 60.916 55.000 8.35 0.00 0.00 4.95
12 13 0.465097 CAGGAGCTGCACATTAGGGG 60.465 60.000 8.35 0.00 0.00 4.79
13 14 0.543277 TCAGGAGCTGCACATTAGGG 59.457 55.000 8.35 0.00 0.00 3.53
14 15 1.065926 TGTCAGGAGCTGCACATTAGG 60.066 52.381 8.35 0.00 0.00 2.69
15 16 2.277969 CTGTCAGGAGCTGCACATTAG 58.722 52.381 8.35 0.00 0.00 1.73
16 17 1.676916 GCTGTCAGGAGCTGCACATTA 60.677 52.381 8.35 0.00 35.95 1.90
17 18 0.959372 GCTGTCAGGAGCTGCACATT 60.959 55.000 8.35 0.00 35.95 2.71
18 19 1.376942 GCTGTCAGGAGCTGCACAT 60.377 57.895 8.35 0.00 35.95 3.21
19 20 2.031616 GCTGTCAGGAGCTGCACA 59.968 61.111 8.35 2.82 35.95 4.57
20 21 2.031616 TGCTGTCAGGAGCTGCAC 59.968 61.111 8.35 0.00 39.90 4.57
21 22 2.346365 CTGCTGTCAGGAGCTGCA 59.654 61.111 8.57 0.00 39.90 4.41
36 37 2.510238 GTAGAGTGCAGCGCCCTG 60.510 66.667 2.29 0.00 42.13 4.45
37 38 3.775654 GGTAGAGTGCAGCGCCCT 61.776 66.667 2.29 0.00 0.00 5.19
39 40 4.436998 ACGGTAGAGTGCAGCGCC 62.437 66.667 2.29 0.00 40.39 6.53
40 41 3.181967 CACGGTAGAGTGCAGCGC 61.182 66.667 0.00 0.00 40.39 5.92
46 47 1.738099 GGTGCTGCACGGTAGAGTG 60.738 63.158 24.86 0.00 44.47 3.51
47 48 0.611062 TAGGTGCTGCACGGTAGAGT 60.611 55.000 24.86 7.14 34.83 3.24
48 49 0.530744 TTAGGTGCTGCACGGTAGAG 59.469 55.000 24.86 0.00 34.83 2.43
49 50 0.245539 GTTAGGTGCTGCACGGTAGA 59.754 55.000 24.86 7.63 34.83 2.59
50 51 0.037697 TGTTAGGTGCTGCACGGTAG 60.038 55.000 24.86 0.00 34.83 3.18
51 52 0.320073 GTGTTAGGTGCTGCACGGTA 60.320 55.000 24.86 16.35 34.83 4.02
52 53 1.597027 GTGTTAGGTGCTGCACGGT 60.597 57.895 24.86 17.33 34.83 4.83
53 54 1.291877 GAGTGTTAGGTGCTGCACGG 61.292 60.000 24.86 0.00 36.99 4.94
54 55 0.599991 TGAGTGTTAGGTGCTGCACG 60.600 55.000 24.86 0.00 36.99 5.34
55 56 1.151668 CTGAGTGTTAGGTGCTGCAC 58.848 55.000 24.02 24.02 0.00 4.57
56 57 0.035317 CCTGAGTGTTAGGTGCTGCA 59.965 55.000 0.00 0.00 0.00 4.41
57 58 1.301677 GCCTGAGTGTTAGGTGCTGC 61.302 60.000 0.00 0.00 37.64 5.25
58 59 1.016130 CGCCTGAGTGTTAGGTGCTG 61.016 60.000 0.00 0.00 38.81 4.41
59 60 1.293498 CGCCTGAGTGTTAGGTGCT 59.707 57.895 0.00 0.00 38.81 4.40
60 61 3.876300 CGCCTGAGTGTTAGGTGC 58.124 61.111 0.00 0.00 38.81 5.01
61 62 1.741770 GGCGCCTGAGTGTTAGGTG 60.742 63.158 22.15 0.00 46.21 4.00
62 63 2.214216 TGGCGCCTGAGTGTTAGGT 61.214 57.895 29.70 0.00 37.64 3.08
63 64 1.741770 GTGGCGCCTGAGTGTTAGG 60.742 63.158 29.70 0.00 38.39 2.69
64 65 1.005037 TGTGGCGCCTGAGTGTTAG 60.005 57.895 29.70 0.00 0.00 2.34
65 66 1.301401 GTGTGGCGCCTGAGTGTTA 60.301 57.895 29.70 0.07 0.00 2.41
66 67 2.591715 GTGTGGCGCCTGAGTGTT 60.592 61.111 29.70 0.00 0.00 3.32
67 68 4.626081 GGTGTGGCGCCTGAGTGT 62.626 66.667 29.70 0.00 0.00 3.55
68 69 4.320456 AGGTGTGGCGCCTGAGTG 62.320 66.667 29.70 0.00 43.37 3.51
73 74 4.320456 CTCACAGGTGTGGCGCCT 62.320 66.667 29.70 2.88 46.26 5.52
78 79 4.320456 AGGCGCTCACAGGTGTGG 62.320 66.667 7.64 2.76 45.65 4.17
79 80 2.793160 ATCAGGCGCTCACAGGTGTG 62.793 60.000 7.64 3.56 46.91 3.82
80 81 2.587247 ATCAGGCGCTCACAGGTGT 61.587 57.895 7.64 0.00 0.00 4.16
81 82 2.104859 CATCAGGCGCTCACAGGTG 61.105 63.158 7.64 0.00 0.00 4.00
82 83 2.267006 CATCAGGCGCTCACAGGT 59.733 61.111 7.64 0.00 0.00 4.00
83 84 2.513204 CCATCAGGCGCTCACAGG 60.513 66.667 7.64 0.20 0.00 4.00
101 102 0.803768 CAGTGTAGTGCAGCGGCTAG 60.804 60.000 10.92 0.00 41.91 3.42
102 103 1.215382 CAGTGTAGTGCAGCGGCTA 59.785 57.895 10.92 0.00 41.91 3.93
103 104 2.047844 CAGTGTAGTGCAGCGGCT 60.048 61.111 10.92 0.00 41.91 5.52
104 105 2.357517 ACAGTGTAGTGCAGCGGC 60.358 61.111 0.31 0.31 41.68 6.53
105 106 3.554232 CACAGTGTAGTGCAGCGG 58.446 61.111 0.00 0.00 32.04 5.52
111 112 2.671177 GGCGCTGCACAGTGTAGTG 61.671 63.158 23.67 23.67 42.30 2.74
112 113 1.532604 TAGGCGCTGCACAGTGTAGT 61.533 55.000 18.74 3.00 40.84 2.73
113 114 0.803768 CTAGGCGCTGCACAGTGTAG 60.804 60.000 14.02 14.02 40.84 2.74
114 115 1.215382 CTAGGCGCTGCACAGTGTA 59.785 57.895 7.64 0.00 40.84 2.90
115 116 2.047844 CTAGGCGCTGCACAGTGT 60.048 61.111 7.64 0.00 40.84 3.55
116 117 3.494336 GCTAGGCGCTGCACAGTG 61.494 66.667 7.64 6.84 41.63 3.66
125 126 2.197577 CAACTTCTTAGAGCTAGGCGC 58.802 52.381 0.00 0.00 39.57 6.53
126 127 2.197577 GCAACTTCTTAGAGCTAGGCG 58.802 52.381 0.00 0.00 0.00 5.52
127 128 2.933260 GTGCAACTTCTTAGAGCTAGGC 59.067 50.000 0.00 0.00 0.00 3.93
128 129 4.180057 CTGTGCAACTTCTTAGAGCTAGG 58.820 47.826 0.00 0.00 38.04 3.02
129 130 4.815269 ACTGTGCAACTTCTTAGAGCTAG 58.185 43.478 0.00 0.00 38.04 3.42
130 131 4.873746 ACTGTGCAACTTCTTAGAGCTA 57.126 40.909 0.00 0.00 38.04 3.32
131 132 3.760580 ACTGTGCAACTTCTTAGAGCT 57.239 42.857 0.00 0.00 38.04 4.09
132 133 4.810790 TCTACTGTGCAACTTCTTAGAGC 58.189 43.478 0.00 0.00 38.04 4.09
133 134 5.861251 CACTCTACTGTGCAACTTCTTAGAG 59.139 44.000 11.57 11.57 37.44 2.43
134 135 5.773575 CACTCTACTGTGCAACTTCTTAGA 58.226 41.667 0.00 0.00 38.04 2.10
146 147 0.319728 AGGTGCTGCACTCTACTGTG 59.680 55.000 29.54 0.00 40.62 3.66
147 148 1.924731 TAGGTGCTGCACTCTACTGT 58.075 50.000 29.54 10.26 34.40 3.55
148 149 2.232452 AGTTAGGTGCTGCACTCTACTG 59.768 50.000 29.54 0.00 34.40 2.74
149 150 2.494073 GAGTTAGGTGCTGCACTCTACT 59.506 50.000 29.54 26.02 34.07 2.57
150 151 2.494073 AGAGTTAGGTGCTGCACTCTAC 59.506 50.000 29.54 22.58 43.41 2.59
151 152 2.755655 GAGAGTTAGGTGCTGCACTCTA 59.244 50.000 29.54 24.10 44.87 2.43
152 153 1.638529 AGAGTTAGGTGCTGCACTCT 58.361 50.000 29.54 25.01 40.99 3.24
153 154 1.734047 CGAGAGTTAGGTGCTGCACTC 60.734 57.143 29.54 19.40 36.66 3.51
154 155 0.244994 CGAGAGTTAGGTGCTGCACT 59.755 55.000 29.54 18.58 34.40 4.40
155 156 0.737715 CCGAGAGTTAGGTGCTGCAC 60.738 60.000 24.02 24.02 0.00 4.57
156 157 1.591703 CCGAGAGTTAGGTGCTGCA 59.408 57.895 0.00 0.00 0.00 4.41
157 158 1.153549 CCCGAGAGTTAGGTGCTGC 60.154 63.158 0.00 0.00 0.00 5.25
158 159 1.153549 GCCCGAGAGTTAGGTGCTG 60.154 63.158 0.00 0.00 0.00 4.41
159 160 1.305381 AGCCCGAGAGTTAGGTGCT 60.305 57.895 0.00 0.00 32.04 4.40
160 161 1.142097 GAGCCCGAGAGTTAGGTGC 59.858 63.158 0.00 0.00 0.00 5.01
161 162 0.457851 CAGAGCCCGAGAGTTAGGTG 59.542 60.000 0.00 0.00 0.00 4.00
162 163 1.324005 GCAGAGCCCGAGAGTTAGGT 61.324 60.000 0.00 0.00 0.00 3.08
163 164 1.323271 TGCAGAGCCCGAGAGTTAGG 61.323 60.000 0.00 0.00 0.00 2.69
164 165 0.179124 GTGCAGAGCCCGAGAGTTAG 60.179 60.000 0.00 0.00 0.00 2.34
165 166 0.898326 TGTGCAGAGCCCGAGAGTTA 60.898 55.000 0.00 0.00 0.00 2.24
166 167 1.758440 TTGTGCAGAGCCCGAGAGTT 61.758 55.000 0.00 0.00 0.00 3.01
167 168 1.758440 TTTGTGCAGAGCCCGAGAGT 61.758 55.000 0.00 0.00 0.00 3.24
168 169 0.603707 TTTTGTGCAGAGCCCGAGAG 60.604 55.000 0.00 0.00 0.00 3.20
169 170 0.603707 CTTTTGTGCAGAGCCCGAGA 60.604 55.000 0.00 0.00 0.00 4.04
170 171 1.580845 CCTTTTGTGCAGAGCCCGAG 61.581 60.000 0.00 0.00 0.00 4.63
171 172 1.600636 CCTTTTGTGCAGAGCCCGA 60.601 57.895 0.00 0.00 0.00 5.14
172 173 2.629656 CCCTTTTGTGCAGAGCCCG 61.630 63.158 0.00 0.00 0.00 6.13
173 174 1.527433 GACCCTTTTGTGCAGAGCCC 61.527 60.000 0.00 0.00 0.00 5.19
174 175 0.823356 TGACCCTTTTGTGCAGAGCC 60.823 55.000 0.00 0.00 0.00 4.70
175 176 0.595095 CTGACCCTTTTGTGCAGAGC 59.405 55.000 0.00 0.00 0.00 4.09
176 177 0.595095 GCTGACCCTTTTGTGCAGAG 59.405 55.000 0.00 0.00 0.00 3.35
177 178 1.165907 CGCTGACCCTTTTGTGCAGA 61.166 55.000 0.00 0.00 0.00 4.26
178 179 1.283793 CGCTGACCCTTTTGTGCAG 59.716 57.895 0.00 0.00 0.00 4.41
179 180 2.192861 CCGCTGACCCTTTTGTGCA 61.193 57.895 0.00 0.00 0.00 4.57
180 181 2.193536 ACCGCTGACCCTTTTGTGC 61.194 57.895 0.00 0.00 0.00 4.57
181 182 1.101049 ACACCGCTGACCCTTTTGTG 61.101 55.000 0.00 0.00 0.00 3.33
182 183 1.101049 CACACCGCTGACCCTTTTGT 61.101 55.000 0.00 0.00 0.00 2.83
183 184 0.817634 TCACACCGCTGACCCTTTTG 60.818 55.000 0.00 0.00 0.00 2.44
184 185 0.106918 TTCACACCGCTGACCCTTTT 60.107 50.000 0.00 0.00 0.00 2.27
185 186 0.106918 TTTCACACCGCTGACCCTTT 60.107 50.000 0.00 0.00 0.00 3.11
186 187 0.110486 ATTTCACACCGCTGACCCTT 59.890 50.000 0.00 0.00 0.00 3.95
187 188 0.110486 AATTTCACACCGCTGACCCT 59.890 50.000 0.00 0.00 0.00 4.34
188 189 0.958822 AAATTTCACACCGCTGACCC 59.041 50.000 0.00 0.00 0.00 4.46
189 190 2.793278 AAAATTTCACACCGCTGACC 57.207 45.000 0.00 0.00 0.00 4.02
206 207 8.594881 TCACAAGCTAAACTGTTTTTGAAAAA 57.405 26.923 18.12 0.00 0.00 1.94
207 208 8.594881 TTCACAAGCTAAACTGTTTTTGAAAA 57.405 26.923 18.12 10.95 28.92 2.29
208 209 8.594881 TTTCACAAGCTAAACTGTTTTTGAAA 57.405 26.923 18.12 15.26 35.82 2.69
209 210 8.770438 ATTTCACAAGCTAAACTGTTTTTGAA 57.230 26.923 18.12 11.72 29.57 2.69
210 211 9.296400 GTATTTCACAAGCTAAACTGTTTTTGA 57.704 29.630 18.12 7.72 0.00 2.69
211 212 9.301153 AGTATTTCACAAGCTAAACTGTTTTTG 57.699 29.630 11.48 11.98 0.00 2.44
212 213 9.869757 AAGTATTTCACAAGCTAAACTGTTTTT 57.130 25.926 11.48 0.00 0.00 1.94
213 214 9.869757 AAAGTATTTCACAAGCTAAACTGTTTT 57.130 25.926 11.48 0.00 27.08 2.43
231 232 4.537135 TGACCTCAGAGCGAAAGTATTT 57.463 40.909 0.00 0.00 43.98 1.40
232 233 4.537135 TTGACCTCAGAGCGAAAGTATT 57.463 40.909 0.00 0.00 0.00 1.89
233 234 4.537135 TTTGACCTCAGAGCGAAAGTAT 57.463 40.909 0.00 0.00 0.00 2.12
234 235 4.220821 AGATTTGACCTCAGAGCGAAAGTA 59.779 41.667 0.00 0.00 0.00 2.24
235 236 2.910688 TTTGACCTCAGAGCGAAAGT 57.089 45.000 0.00 0.00 0.00 2.66
236 237 3.370366 CAGATTTGACCTCAGAGCGAAAG 59.630 47.826 0.00 0.00 0.00 2.62
237 238 3.244215 ACAGATTTGACCTCAGAGCGAAA 60.244 43.478 0.00 0.00 0.00 3.46
238 239 2.300152 ACAGATTTGACCTCAGAGCGAA 59.700 45.455 0.00 0.00 0.00 4.70
239 240 1.895798 ACAGATTTGACCTCAGAGCGA 59.104 47.619 0.00 0.00 0.00 4.93
240 241 2.266554 GACAGATTTGACCTCAGAGCG 58.733 52.381 0.00 0.00 0.00 5.03
241 242 3.325293 TGACAGATTTGACCTCAGAGC 57.675 47.619 0.00 0.00 0.00 4.09
242 243 6.814506 AAATTGACAGATTTGACCTCAGAG 57.185 37.500 0.00 0.00 0.00 3.35
243 244 6.515531 GCAAAATTGACAGATTTGACCTCAGA 60.516 38.462 15.35 0.00 36.41 3.27
244 245 5.632347 GCAAAATTGACAGATTTGACCTCAG 59.368 40.000 15.35 0.00 36.41 3.35
245 246 5.509501 GGCAAAATTGACAGATTTGACCTCA 60.510 40.000 15.35 0.00 36.32 3.86
246 247 4.925646 GGCAAAATTGACAGATTTGACCTC 59.074 41.667 15.35 2.43 36.32 3.85
247 248 4.344679 TGGCAAAATTGACAGATTTGACCT 59.655 37.500 14.71 0.00 42.34 3.85
248 249 4.630111 TGGCAAAATTGACAGATTTGACC 58.370 39.130 14.71 14.57 42.34 4.02
274 275 7.865530 AACAGTACCCCAAAATAAAGGAATT 57.134 32.000 0.00 0.00 0.00 2.17
275 276 7.865530 AAACAGTACCCCAAAATAAAGGAAT 57.134 32.000 0.00 0.00 0.00 3.01
301 302 4.775253 AGGATTAAAATTTTCCCTCCGCAA 59.225 37.500 6.72 0.00 0.00 4.85
303 304 5.339008 AAGGATTAAAATTTTCCCTCCGC 57.661 39.130 6.72 0.00 0.00 5.54
304 305 8.914011 AGATTAAGGATTAAAATTTTCCCTCCG 58.086 33.333 6.72 0.00 44.76 4.63
436 452 7.542130 GCGAGATGAATGGTATTTCTTTGTTTT 59.458 33.333 0.00 0.00 0.00 2.43
437 453 7.029563 GCGAGATGAATGGTATTTCTTTGTTT 58.970 34.615 0.00 0.00 0.00 2.83
438 454 6.375455 AGCGAGATGAATGGTATTTCTTTGTT 59.625 34.615 0.00 0.00 0.00 2.83
439 455 5.882557 AGCGAGATGAATGGTATTTCTTTGT 59.117 36.000 0.00 0.00 0.00 2.83
440 456 6.369059 AGCGAGATGAATGGTATTTCTTTG 57.631 37.500 0.00 0.00 0.00 2.77
444 460 7.598869 TGTGTATAGCGAGATGAATGGTATTTC 59.401 37.037 0.00 0.00 0.00 2.17
467 483 6.023357 TGAATTGGTTGGTGAATATGTGTG 57.977 37.500 0.00 0.00 0.00 3.82
473 489 5.083122 ACCACATGAATTGGTTGGTGAATA 58.917 37.500 0.00 0.00 45.62 1.75
550 568 3.350833 AGAATTAGCTGCTTGGAGGTTG 58.649 45.455 7.79 0.00 0.00 3.77
626 644 6.554419 TGTATGTCTAGCATTTTTGATGTGC 58.446 36.000 5.22 0.00 38.94 4.57
627 645 8.969121 TTTGTATGTCTAGCATTTTTGATGTG 57.031 30.769 5.22 0.00 38.94 3.21
628 646 9.979578 TTTTTGTATGTCTAGCATTTTTGATGT 57.020 25.926 5.22 0.00 38.94 3.06
635 653 9.893305 GTGTAAGTTTTTGTATGTCTAGCATTT 57.107 29.630 5.22 0.00 38.94 2.32
636 654 8.227791 CGTGTAAGTTTTTGTATGTCTAGCATT 58.772 33.333 5.22 0.00 38.94 3.56
637 655 7.623506 GCGTGTAAGTTTTTGTATGTCTAGCAT 60.624 37.037 5.25 5.25 41.42 3.79
638 656 6.347079 GCGTGTAAGTTTTTGTATGTCTAGCA 60.347 38.462 0.00 0.00 0.00 3.49
639 657 6.013689 GCGTGTAAGTTTTTGTATGTCTAGC 58.986 40.000 0.00 0.00 0.00 3.42
640 658 7.347508 AGCGTGTAAGTTTTTGTATGTCTAG 57.652 36.000 0.00 0.00 0.00 2.43
641 659 7.718272 AAGCGTGTAAGTTTTTGTATGTCTA 57.282 32.000 0.00 0.00 0.00 2.59
642 660 6.613755 AAGCGTGTAAGTTTTTGTATGTCT 57.386 33.333 0.00 0.00 0.00 3.41
643 661 7.673810 AAAAGCGTGTAAGTTTTTGTATGTC 57.326 32.000 0.00 0.00 34.17 3.06
644 662 8.182881 TGTAAAAGCGTGTAAGTTTTTGTATGT 58.817 29.630 3.50 0.00 35.76 2.29
645 663 8.466026 GTGTAAAAGCGTGTAAGTTTTTGTATG 58.534 33.333 3.50 0.00 35.76 2.39
646 664 7.373966 CGTGTAAAAGCGTGTAAGTTTTTGTAT 59.626 33.333 3.50 0.00 35.76 2.29
647 665 6.682020 CGTGTAAAAGCGTGTAAGTTTTTGTA 59.318 34.615 3.50 0.00 35.76 2.41
648 666 5.508922 CGTGTAAAAGCGTGTAAGTTTTTGT 59.491 36.000 3.50 0.00 35.76 2.83
649 667 5.551187 GCGTGTAAAAGCGTGTAAGTTTTTG 60.551 40.000 3.50 0.00 35.76 2.44
650 668 4.496539 GCGTGTAAAAGCGTGTAAGTTTTT 59.503 37.500 0.00 0.00 37.99 1.94
651 669 4.030366 GCGTGTAAAAGCGTGTAAGTTTT 58.970 39.130 0.00 0.00 0.00 2.43
652 670 3.310501 AGCGTGTAAAAGCGTGTAAGTTT 59.689 39.130 0.00 0.00 38.61 2.66
653 671 2.867975 AGCGTGTAAAAGCGTGTAAGTT 59.132 40.909 0.00 0.00 38.61 2.66
654 672 2.473984 GAGCGTGTAAAAGCGTGTAAGT 59.526 45.455 0.00 0.00 38.61 2.24
655 673 2.159881 GGAGCGTGTAAAAGCGTGTAAG 60.160 50.000 0.00 0.00 38.61 2.34
656 674 1.794116 GGAGCGTGTAAAAGCGTGTAA 59.206 47.619 0.00 0.00 38.61 2.41
657 675 1.000060 AGGAGCGTGTAAAAGCGTGTA 60.000 47.619 0.00 0.00 38.61 2.90
658 676 0.249741 AGGAGCGTGTAAAAGCGTGT 60.250 50.000 0.00 0.00 38.61 4.49
659 677 0.865769 AAGGAGCGTGTAAAAGCGTG 59.134 50.000 0.00 0.00 38.61 5.34
660 678 1.145803 GAAGGAGCGTGTAAAAGCGT 58.854 50.000 0.00 0.00 38.61 5.07
661 679 0.442699 GGAAGGAGCGTGTAAAAGCG 59.557 55.000 0.00 0.00 38.61 4.68
662 680 1.464997 CTGGAAGGAGCGTGTAAAAGC 59.535 52.381 0.00 0.00 0.00 3.51
663 681 1.464997 GCTGGAAGGAGCGTGTAAAAG 59.535 52.381 0.00 0.00 0.00 2.27
664 682 1.071699 AGCTGGAAGGAGCGTGTAAAA 59.928 47.619 0.00 0.00 44.24 1.52
665 683 0.685097 AGCTGGAAGGAGCGTGTAAA 59.315 50.000 0.00 0.00 44.24 2.01
666 684 1.552578 TAGCTGGAAGGAGCGTGTAA 58.447 50.000 0.00 0.00 44.24 2.41
667 685 1.203994 GTTAGCTGGAAGGAGCGTGTA 59.796 52.381 0.00 0.00 44.24 2.90
668 686 0.037232 GTTAGCTGGAAGGAGCGTGT 60.037 55.000 0.00 0.00 44.24 4.49
669 687 0.037326 TGTTAGCTGGAAGGAGCGTG 60.037 55.000 0.00 0.00 44.24 5.34
670 688 0.685097 TTGTTAGCTGGAAGGAGCGT 59.315 50.000 0.00 0.00 44.24 5.07
671 689 1.079503 GTTGTTAGCTGGAAGGAGCG 58.920 55.000 0.00 0.00 44.24 5.03
672 690 1.271379 TGGTTGTTAGCTGGAAGGAGC 60.271 52.381 0.00 0.00 39.46 4.70
673 691 2.859165 TGGTTGTTAGCTGGAAGGAG 57.141 50.000 0.00 0.00 0.00 3.69
674 692 3.073798 TGATTGGTTGTTAGCTGGAAGGA 59.926 43.478 0.00 0.00 0.00 3.36
675 693 3.191371 GTGATTGGTTGTTAGCTGGAAGG 59.809 47.826 0.00 0.00 0.00 3.46
676 694 3.820467 TGTGATTGGTTGTTAGCTGGAAG 59.180 43.478 0.00 0.00 0.00 3.46
677 695 3.826524 TGTGATTGGTTGTTAGCTGGAA 58.173 40.909 0.00 0.00 0.00 3.53
678 696 3.500448 TGTGATTGGTTGTTAGCTGGA 57.500 42.857 0.00 0.00 0.00 3.86
679 697 4.298332 GTTTGTGATTGGTTGTTAGCTGG 58.702 43.478 0.00 0.00 0.00 4.85
680 698 4.037923 AGGTTTGTGATTGGTTGTTAGCTG 59.962 41.667 0.00 0.00 0.00 4.24
681 699 4.215109 AGGTTTGTGATTGGTTGTTAGCT 58.785 39.130 0.00 0.00 0.00 3.32
682 700 4.546570 GAGGTTTGTGATTGGTTGTTAGC 58.453 43.478 0.00 0.00 0.00 3.09
683 701 4.022329 GGGAGGTTTGTGATTGGTTGTTAG 60.022 45.833 0.00 0.00 0.00 2.34
684 702 3.892588 GGGAGGTTTGTGATTGGTTGTTA 59.107 43.478 0.00 0.00 0.00 2.41
685 703 2.698274 GGGAGGTTTGTGATTGGTTGTT 59.302 45.455 0.00 0.00 0.00 2.83
686 704 2.316108 GGGAGGTTTGTGATTGGTTGT 58.684 47.619 0.00 0.00 0.00 3.32
687 705 1.618343 GGGGAGGTTTGTGATTGGTTG 59.382 52.381 0.00 0.00 0.00 3.77
688 706 1.482365 GGGGGAGGTTTGTGATTGGTT 60.482 52.381 0.00 0.00 0.00 3.67
689 707 0.114364 GGGGGAGGTTTGTGATTGGT 59.886 55.000 0.00 0.00 0.00 3.67
690 708 2.976099 GGGGGAGGTTTGTGATTGG 58.024 57.895 0.00 0.00 0.00 3.16
710 728 2.813754 CGGCTCACCTCTTGAAAATCAA 59.186 45.455 0.00 0.00 34.79 2.57
711 729 2.426522 CGGCTCACCTCTTGAAAATCA 58.573 47.619 0.00 0.00 32.21 2.57
712 730 1.131315 GCGGCTCACCTCTTGAAAATC 59.869 52.381 0.00 0.00 32.21 2.17
713 731 1.168714 GCGGCTCACCTCTTGAAAAT 58.831 50.000 0.00 0.00 32.21 1.82
714 732 0.108585 AGCGGCTCACCTCTTGAAAA 59.891 50.000 0.00 0.00 32.21 2.29
715 733 0.320771 GAGCGGCTCACCTCTTGAAA 60.321 55.000 24.42 0.00 32.21 2.69
716 734 1.293498 GAGCGGCTCACCTCTTGAA 59.707 57.895 24.42 0.00 32.21 2.69
717 735 2.650116 GGAGCGGCTCACCTCTTGA 61.650 63.158 29.33 0.00 28.56 3.02
718 736 2.125350 GGAGCGGCTCACCTCTTG 60.125 66.667 29.33 0.00 28.56 3.02
719 737 3.764466 CGGAGCGGCTCACCTCTT 61.764 66.667 29.33 0.00 28.56 2.85
732 750 3.669354 GGTCAATAGGTGAGCGGAG 57.331 57.895 0.00 0.00 44.38 4.63
737 755 8.674607 GTTAACCTTAATTGGTCAATAGGTGAG 58.325 37.037 15.12 0.84 38.28 3.51
738 756 7.612633 GGTTAACCTTAATTGGTCAATAGGTGA 59.387 37.037 17.83 8.16 38.28 4.02
739 757 7.394923 TGGTTAACCTTAATTGGTCAATAGGTG 59.605 37.037 24.78 2.07 38.28 4.00
740 758 7.471890 TGGTTAACCTTAATTGGTCAATAGGT 58.528 34.615 24.78 10.70 39.96 3.08
741 759 7.948034 TGGTTAACCTTAATTGGTCAATAGG 57.052 36.000 24.78 9.71 39.83 2.57
742 760 8.630037 GGATGGTTAACCTTAATTGGTCAATAG 58.370 37.037 24.78 0.00 39.83 1.73
743 761 8.340757 AGGATGGTTAACCTTAATTGGTCAATA 58.659 33.333 24.78 0.07 39.83 1.90
744 762 7.189087 AGGATGGTTAACCTTAATTGGTCAAT 58.811 34.615 24.78 5.84 39.83 2.57
745 763 6.557568 AGGATGGTTAACCTTAATTGGTCAA 58.442 36.000 24.78 0.73 39.83 3.18
746 764 6.147437 AGGATGGTTAACCTTAATTGGTCA 57.853 37.500 24.78 1.27 39.83 4.02
747 765 9.856162 TTATAGGATGGTTAACCTTAATTGGTC 57.144 33.333 24.78 9.78 39.83 4.02
752 770 9.363401 GGCTTTTATAGGATGGTTAACCTTAAT 57.637 33.333 24.78 10.77 37.68 1.40
753 771 8.562635 AGGCTTTTATAGGATGGTTAACCTTAA 58.437 33.333 24.78 5.89 37.68 1.85
754 772 7.996644 CAGGCTTTTATAGGATGGTTAACCTTA 59.003 37.037 24.78 12.37 37.68 2.69
755 773 6.833933 CAGGCTTTTATAGGATGGTTAACCTT 59.166 38.462 24.78 18.87 37.68 3.50
756 774 6.069029 ACAGGCTTTTATAGGATGGTTAACCT 60.069 38.462 24.78 10.91 39.95 3.50
757 775 6.127101 ACAGGCTTTTATAGGATGGTTAACC 58.873 40.000 18.27 18.27 0.00 2.85
758 776 8.741603 TTACAGGCTTTTATAGGATGGTTAAC 57.258 34.615 0.00 0.00 0.00 2.01
759 777 9.930158 ATTTACAGGCTTTTATAGGATGGTTAA 57.070 29.630 0.00 0.00 0.00 2.01
760 778 9.349713 CATTTACAGGCTTTTATAGGATGGTTA 57.650 33.333 0.00 0.00 0.00 2.85
761 779 7.287696 CCATTTACAGGCTTTTATAGGATGGTT 59.712 37.037 0.00 0.00 0.00 3.67
762 780 6.777580 CCATTTACAGGCTTTTATAGGATGGT 59.222 38.462 0.00 0.00 0.00 3.55
763 781 6.777580 ACCATTTACAGGCTTTTATAGGATGG 59.222 38.462 0.00 0.00 36.21 3.51
764 782 7.823745 ACCATTTACAGGCTTTTATAGGATG 57.176 36.000 0.00 0.00 0.00 3.51
765 783 8.695456 CAAACCATTTACAGGCTTTTATAGGAT 58.305 33.333 0.00 0.00 0.00 3.24
766 784 7.672239 ACAAACCATTTACAGGCTTTTATAGGA 59.328 33.333 0.00 0.00 0.00 2.94
767 785 7.836842 ACAAACCATTTACAGGCTTTTATAGG 58.163 34.615 0.00 0.00 0.00 2.57
768 786 9.783256 GTACAAACCATTTACAGGCTTTTATAG 57.217 33.333 0.00 0.00 0.00 1.31
769 787 8.452534 CGTACAAACCATTTACAGGCTTTTATA 58.547 33.333 0.00 0.00 0.00 0.98
770 788 7.040271 ACGTACAAACCATTTACAGGCTTTTAT 60.040 33.333 0.00 0.00 0.00 1.40
771 789 6.262720 ACGTACAAACCATTTACAGGCTTTTA 59.737 34.615 0.00 0.00 0.00 1.52
772 790 5.068067 ACGTACAAACCATTTACAGGCTTTT 59.932 36.000 0.00 0.00 0.00 2.27
773 791 4.581409 ACGTACAAACCATTTACAGGCTTT 59.419 37.500 0.00 0.00 0.00 3.51
774 792 4.023536 CACGTACAAACCATTTACAGGCTT 60.024 41.667 0.00 0.00 0.00 4.35
775 793 3.500680 CACGTACAAACCATTTACAGGCT 59.499 43.478 0.00 0.00 0.00 4.58
776 794 3.251487 ACACGTACAAACCATTTACAGGC 59.749 43.478 0.00 0.00 0.00 4.85
777 795 5.390145 GCTACACGTACAAACCATTTACAGG 60.390 44.000 0.00 0.00 0.00 4.00
778 796 5.177881 TGCTACACGTACAAACCATTTACAG 59.822 40.000 0.00 0.00 0.00 2.74
779 797 5.055144 TGCTACACGTACAAACCATTTACA 58.945 37.500 0.00 0.00 0.00 2.41
780 798 5.594724 TGCTACACGTACAAACCATTTAC 57.405 39.130 0.00 0.00 0.00 2.01
781 799 6.604012 CAATGCTACACGTACAAACCATTTA 58.396 36.000 0.00 0.00 0.00 1.40
782 800 5.457140 CAATGCTACACGTACAAACCATTT 58.543 37.500 0.00 0.00 0.00 2.32
783 801 4.614993 GCAATGCTACACGTACAAACCATT 60.615 41.667 0.00 0.00 0.00 3.16
784 802 3.119990 GCAATGCTACACGTACAAACCAT 60.120 43.478 0.00 0.00 0.00 3.55
785 803 2.224549 GCAATGCTACACGTACAAACCA 59.775 45.455 0.00 0.00 0.00 3.67
786 804 2.413634 GGCAATGCTACACGTACAAACC 60.414 50.000 4.82 0.00 0.00 3.27
787 805 2.723618 CGGCAATGCTACACGTACAAAC 60.724 50.000 4.82 0.00 0.00 2.93
788 806 1.461512 CGGCAATGCTACACGTACAAA 59.538 47.619 4.82 0.00 0.00 2.83
789 807 1.072391 CGGCAATGCTACACGTACAA 58.928 50.000 4.82 0.00 0.00 2.41
790 808 0.244178 TCGGCAATGCTACACGTACA 59.756 50.000 4.82 0.00 0.00 2.90
791 809 1.323534 CTTCGGCAATGCTACACGTAC 59.676 52.381 4.82 0.00 0.00 3.67
792 810 1.202817 TCTTCGGCAATGCTACACGTA 59.797 47.619 4.82 0.00 0.00 3.57
793 811 0.037697 TCTTCGGCAATGCTACACGT 60.038 50.000 4.82 0.00 0.00 4.49
794 812 0.370273 GTCTTCGGCAATGCTACACG 59.630 55.000 4.82 0.00 0.00 4.49
795 813 0.727398 GGTCTTCGGCAATGCTACAC 59.273 55.000 4.82 0.00 0.00 2.90
796 814 0.323302 TGGTCTTCGGCAATGCTACA 59.677 50.000 4.82 0.00 0.00 2.74
797 815 0.727398 GTGGTCTTCGGCAATGCTAC 59.273 55.000 4.82 0.00 0.00 3.58
798 816 0.323302 TGTGGTCTTCGGCAATGCTA 59.677 50.000 4.82 0.00 0.00 3.49
799 817 0.322816 ATGTGGTCTTCGGCAATGCT 60.323 50.000 4.82 0.00 0.00 3.79
800 818 0.179156 CATGTGGTCTTCGGCAATGC 60.179 55.000 0.00 0.00 0.00 3.56
801 819 0.452987 CCATGTGGTCTTCGGCAATG 59.547 55.000 0.00 0.00 0.00 2.82
802 820 2.872408 CCATGTGGTCTTCGGCAAT 58.128 52.632 0.00 0.00 0.00 3.56
803 821 4.395519 CCATGTGGTCTTCGGCAA 57.604 55.556 0.00 0.00 0.00 4.52
858 876 1.199615 GGTTGAAGGGAGAGAGGAGG 58.800 60.000 0.00 0.00 0.00 4.30
859 877 1.944177 TGGTTGAAGGGAGAGAGGAG 58.056 55.000 0.00 0.00 0.00 3.69
860 878 2.472029 GATGGTTGAAGGGAGAGAGGA 58.528 52.381 0.00 0.00 0.00 3.71
1013 1037 2.159198 CCTCTGCTCTTCTCTTCTGCTC 60.159 54.545 0.00 0.00 0.00 4.26
1053 1095 2.577700 CCTACACGTCTCCTCTGCTAT 58.422 52.381 0.00 0.00 0.00 2.97
1058 1100 0.697079 TGTCCCTACACGTCTCCTCT 59.303 55.000 0.00 0.00 0.00 3.69
1065 1107 0.252103 ACCTCCATGTCCCTACACGT 60.252 55.000 0.00 0.00 38.78 4.49
1069 1111 1.527370 GCCACCTCCATGTCCCTAC 59.473 63.158 0.00 0.00 0.00 3.18
1070 1112 2.063979 CGCCACCTCCATGTCCCTA 61.064 63.158 0.00 0.00 0.00 3.53
1071 1113 3.402681 CGCCACCTCCATGTCCCT 61.403 66.667 0.00 0.00 0.00 4.20
1072 1114 4.489771 CCGCCACCTCCATGTCCC 62.490 72.222 0.00 0.00 0.00 4.46
1073 1115 3.717294 ACCGCCACCTCCATGTCC 61.717 66.667 0.00 0.00 0.00 4.02
1403 1456 2.609920 GGGGAGACGGAGAGGGAT 59.390 66.667 0.00 0.00 0.00 3.85
1427 1480 2.107292 CGTCCTCGCTCTTCTCGGA 61.107 63.158 0.00 0.00 0.00 4.55
1486 1542 3.458163 GACCCTGATCGGCCGACA 61.458 66.667 33.75 27.02 0.00 4.35
1808 1864 4.195334 CCCCTCCCCTTCCGCATG 62.195 72.222 0.00 0.00 0.00 4.06
1997 2053 2.370393 GCGGTTGGAGTTCGACGAC 61.370 63.158 0.00 0.00 0.00 4.34
2119 2183 7.803279 AACGAATAAAAACTGTTCTCTTCCT 57.197 32.000 0.00 0.00 0.00 3.36
2121 2185 7.644157 AGCAAACGAATAAAAACTGTTCTCTTC 59.356 33.333 0.00 0.00 0.00 2.87
2132 2196 4.846779 AGCAGGAGCAAACGAATAAAAA 57.153 36.364 0.00 0.00 45.49 1.94
2159 2223 5.660417 AGAAAGAATACAGATCAGGAGAGCA 59.340 40.000 0.00 0.00 30.99 4.26
2162 2226 7.724490 TGAAGAAAGAATACAGATCAGGAGA 57.276 36.000 0.00 0.00 0.00 3.71
2276 2350 1.333619 TCAAGGCGTGCTTGAGTTTTC 59.666 47.619 0.00 0.00 36.09 2.29
2290 2364 3.056891 TCCGGTGAAATGAAATTCAAGGC 60.057 43.478 0.00 0.00 40.76 4.35
2302 2376 1.337823 CGAGTTGGACTCCGGTGAAAT 60.338 52.381 11.17 0.00 42.12 2.17
2303 2377 0.032952 CGAGTTGGACTCCGGTGAAA 59.967 55.000 11.17 0.00 42.12 2.69
2304 2378 1.111116 ACGAGTTGGACTCCGGTGAA 61.111 55.000 11.17 0.00 42.12 3.18
2305 2379 1.111116 AACGAGTTGGACTCCGGTGA 61.111 55.000 11.17 0.00 42.12 4.02
2306 2380 0.249741 AAACGAGTTGGACTCCGGTG 60.250 55.000 0.00 0.00 42.12 4.94
2307 2381 0.466963 AAAACGAGTTGGACTCCGGT 59.533 50.000 0.00 0.00 42.12 5.28
2308 2382 0.865769 CAAAACGAGTTGGACTCCGG 59.134 55.000 0.00 0.00 42.12 5.14
2309 2383 0.234884 GCAAAACGAGTTGGACTCCG 59.765 55.000 2.74 1.57 42.12 4.63
2310 2384 0.591659 GGCAAAACGAGTTGGACTCC 59.408 55.000 2.74 0.00 42.12 3.85
2311 2385 1.264288 CTGGCAAAACGAGTTGGACTC 59.736 52.381 0.00 0.00 41.71 3.36
2312 2386 1.134220 TCTGGCAAAACGAGTTGGACT 60.134 47.619 0.00 0.00 0.00 3.85
2313 2387 1.264288 CTCTGGCAAAACGAGTTGGAC 59.736 52.381 0.00 0.00 0.00 4.02
2314 2388 1.593196 CTCTGGCAAAACGAGTTGGA 58.407 50.000 0.00 0.00 0.00 3.53
2315 2389 0.040067 GCTCTGGCAAAACGAGTTGG 60.040 55.000 3.78 0.00 38.54 3.77
2316 2390 0.947244 AGCTCTGGCAAAACGAGTTG 59.053 50.000 3.78 0.00 41.70 3.16
2317 2391 0.947244 CAGCTCTGGCAAAACGAGTT 59.053 50.000 3.78 0.00 41.70 3.01
2318 2392 0.179045 ACAGCTCTGGCAAAACGAGT 60.179 50.000 1.66 0.00 41.70 4.18
2319 2393 0.236711 CACAGCTCTGGCAAAACGAG 59.763 55.000 1.66 0.00 41.70 4.18
2329 2403 1.669779 GGAATTAGCAGCACAGCTCTG 59.330 52.381 1.42 0.00 45.26 3.35
2338 2412 1.162800 CGCTCAGGGGAATTAGCAGC 61.163 60.000 0.00 0.00 34.60 5.25
2350 2424 1.300233 GGTCGCCTAATCGCTCAGG 60.300 63.158 0.00 0.00 34.85 3.86
2351 2425 0.179111 TTGGTCGCCTAATCGCTCAG 60.179 55.000 0.00 0.00 0.00 3.35
2352 2426 0.248012 TTTGGTCGCCTAATCGCTCA 59.752 50.000 0.00 0.00 0.00 4.26
2409 2486 1.073199 CTGCGTCCTCCCTGGTTTT 59.927 57.895 0.00 0.00 37.07 2.43
2505 2582 0.730834 CGATCGATCCACCGAGCATC 60.731 60.000 19.51 0.00 44.19 3.91
2506 2583 1.172812 TCGATCGATCCACCGAGCAT 61.173 55.000 19.51 0.00 44.19 3.79
2507 2584 1.172812 ATCGATCGATCCACCGAGCA 61.173 55.000 24.60 0.00 44.19 4.26
2508 2585 0.455295 GATCGATCGATCCACCGAGC 60.455 60.000 36.97 17.65 43.71 5.03
2509 2586 3.685459 GATCGATCGATCCACCGAG 57.315 57.895 36.97 4.69 43.71 4.63
2564 2641 0.319405 ACCATTATACTACGCCCCGC 59.681 55.000 0.00 0.00 0.00 6.13
2644 2724 2.514267 GGATTATTCCGTCCGTCGC 58.486 57.895 0.00 0.00 38.35 5.19
2724 2804 4.322801 GGCTCTAATCATGCCGGTTACTAT 60.323 45.833 1.90 0.00 37.11 2.12
2759 2841 1.203287 TCAACACCTCAGCTCATCTCG 59.797 52.381 0.00 0.00 0.00 4.04
2905 2996 2.682352 GACGGAGGGAGTACTTGTCTAC 59.318 54.545 0.00 0.00 0.00 2.59
2907 2998 1.616456 GGACGGAGGGAGTACTTGTCT 60.616 57.143 0.00 0.00 0.00 3.41
2914 3005 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2915 3006 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2916 3007 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2917 3008 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2918 3009 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2919 3010 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2920 3011 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2921 3012 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2922 3013 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2923 3014 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2924 3015 9.834628 TTATTTTGATGACAAGTATTTTCGGAC 57.165 29.630 0.00 0.00 37.32 4.79
2934 3025 9.883142 TCCTTTTTGTTTATTTTGATGACAAGT 57.117 25.926 0.00 0.00 37.32 3.16
2972 3063 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
2980 3071 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
2986 3077 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
2989 3080 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
2990 3081 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
2991 3082 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
2992 3083 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
2993 3084 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
2994 3085 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
3002 3093 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
3003 3094 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
3004 3095 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
3005 3096 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
3006 3097 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
3007 3098 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
3008 3099 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3009 3100 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3010 3101 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3011 3102 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3012 3103 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3013 3104 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3014 3105 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3015 3106 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3016 3107 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3017 3108 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3018 3109 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3019 3110 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3020 3111 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3021 3112 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3022 3113 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
3023 3114 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
3024 3115 2.304056 ACTACTCCCTCCGTCCGGA 61.304 63.158 0.00 0.00 42.90 5.14
3025 3116 2.119655 CACTACTCCCTCCGTCCGG 61.120 68.421 0.00 0.00 0.00 5.14
3026 3117 1.077930 TCACTACTCCCTCCGTCCG 60.078 63.158 0.00 0.00 0.00 4.79
3027 3118 0.034283 ACTCACTACTCCCTCCGTCC 60.034 60.000 0.00 0.00 0.00 4.79
3028 3119 2.093021 ACTACTCACTACTCCCTCCGTC 60.093 54.545 0.00 0.00 0.00 4.79
3029 3120 1.914798 ACTACTCACTACTCCCTCCGT 59.085 52.381 0.00 0.00 0.00 4.69
3030 3121 2.713863 ACTACTCACTACTCCCTCCG 57.286 55.000 0.00 0.00 0.00 4.63
3031 3122 7.342541 AGAAAATTACTACTCACTACTCCCTCC 59.657 40.741 0.00 0.00 0.00 4.30
3032 3123 8.296211 AGAAAATTACTACTCACTACTCCCTC 57.704 38.462 0.00 0.00 0.00 4.30
3033 3124 8.117312 AGAGAAAATTACTACTCACTACTCCCT 58.883 37.037 0.00 0.00 32.59 4.20
3034 3125 8.192110 CAGAGAAAATTACTACTCACTACTCCC 58.808 40.741 0.00 0.00 32.59 4.30
3035 3126 8.192110 CCAGAGAAAATTACTACTCACTACTCC 58.808 40.741 0.00 0.00 32.59 3.85
3036 3127 7.703197 GCCAGAGAAAATTACTACTCACTACTC 59.297 40.741 0.00 0.00 32.59 2.59
3037 3128 7.363968 GGCCAGAGAAAATTACTACTCACTACT 60.364 40.741 0.00 0.00 32.59 2.57
3038 3129 6.757478 GGCCAGAGAAAATTACTACTCACTAC 59.243 42.308 0.00 0.00 32.59 2.73
3073 3164 4.444056 CCAATCAACCGACAATTCAACAAC 59.556 41.667 0.00 0.00 0.00 3.32
3078 3169 3.005261 CCAACCAATCAACCGACAATTCA 59.995 43.478 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.