>input_sequence_60356
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---------------------------------------------------------------CTTTAAAGAAGTAG---
---AGCAGA--------AGAGAAGAGCAGAGGCGGGGAGTGAGGAGAG----GTATAGCAGAGGAGACGTGTAGGGAC--
------ATGGAGGTGGCGGTGCCTGTCATGGCGCCGAGCGCGCCGTGCAGCCCAAGAACCGCGGCTGCCATGGGCGGCGG
CGGCAGCCACCTGCCC---AGCTACTGCTACTTCTTCTCCAGCGCCCCCACCAGCCCGTCCAGGGCCAGCAGCTACGCCG
CGGACGAGCAGGGCGACGCCGCCACGTTCGACTTCGCCTTCGGGTTCAGCGGGCAGCTCAGGGAGTCCACGCCCATCCTC
GCCGCCGCCGACGAGCTGTTCGAGGGCGGCAGGATCCGTCCGCTCAACGGCCCACGCTCCAGCGGCAGCGGCCTGCTCGC
CGACGAGGACTACGCATCCCTCTCCGTCTCCCCCCGGTCTCCGAGAAGAGCGAGGACGATGTCCGCGGTGCGCGGTGG--
-CGCAGGGGATCGGGCGGAGGTGTCGGCCGATCAGGGTCAGACGAGGGGCAGGTCCGGCCGGCCGGCCCCTGCGTCGTCC
TCGTCGTCGGGCGTGTCGTCTCGCAGCAGGAGGGCCACGCGGTCTCTGTCCCCGTACAGGGGCGACCCGATCGACGACGA
GTTCTGCTCCTCCCCACCCTCCCCCCGCGGCGCCGCCTCCCTGATGCGCGGCTGCGGGAGCGGCAGCCGCAAGTGGCGGC
TCAAGGACCTGTTCCTGTTCCGCAGCGCGTCGGAGGGCCGCGCCACCGCCGGCAAGGACCCGCTGCTCAAGTACAGCATG
CTCAAGAGCGGCGGCGACGCGTCCATGCGGAAGGGGAGGGGCTCGGCGGCGTCGGCCAGCGACATGGCGCCGTACACGGT
GAGCCGGGCGGCGGCCGAGGAGATGCGGCGGAGGACGACGACGCCGCTGCCGTTCCACCGGAACAGCCTCTTCGGCTACT
TCAGGTCCAACCCGGCCATCCACTCCATCAGCCGCAAGCTCAGCAGCTACTCGTCGTCGAACTCCAACCGCGGCCGGAGC
GCCACCGCCGCCGCCAACTGACGGCCGACGACGCAGCTCGCTC----GCCCGCGCGCACATGCATGGC--GCTGGCTACT
TTGGCAGTAGGA--------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G192000
TCATCCAGCAGACCCCTAATGTGCAGCTCCTGACAGCAGGGCGCTGCACTCTACCGTGCAGCACCTAACACTCAGGCGCC
ACACCTGTGAGCGCCTGATGGCTAGCCGCTGCACTACACTGTGCAGCGCCTAGCTCTAAGAAGTTGCACAGTAGAGTGCA
GCACCTAACTCTCGGGCTCTGCACAAAAGGGTCAGCGGTGTGAAATTTTTTCAAAAACAGTTTAGCTTGTGAAATACTTT
CGCTCTGAGGTCAAATCTGTCAATTTTGCCAAAAAATTCCTTTATTTTGGGGTACTGTTTTTTGCGGAGGGAAAATTTTA
ATCCTTAATCTCTCCAGAAAAATTACCATTTTTACTTTTTGTGATAACTA----------AGTTGTTGATTG-----TTT
TTTAAAGATAGCTACCCGCTTATTCCAGACGTTTTTTGCTATCACTAAAATAAAACAAAGAAATACCATTCATCTCGCTA
TACACACATATTCACCAACCAATTCATGTGGTCTCTT-ACCGTGCTAGCGGCTGCATGCACGGGAAC-AAAAGAGCGTGT
TATTTTCCAACCTCCAAGCAGCTAATTCTCTAACGAACTGTTGATGTCAATCGGATTAAAAACGAGCAAGTTGCGTATAA
GACGCACATCAAAAATGCTAGACATACAAAAACTTACACGCTTTTACACGCTCCTTCCAGCTAACAACCAATCACAAACC
TCCCCCCTTGATTTTCAAGAGGTGAGCCGCTCCGCTCACCTATTGACCAATTAAGGTTAACCATCCTATAAAAGCCTGTA
AATGGTTTGTACGTGTAGCATTGCCGAAGACCACATGGTCGATGTCTCGGCGACGGCTTTTAACGTACCCTCCCCCCTCC
TCTCTCCCTTCAACCATCCCCCCACCCCCACCCCCTACGATCGATCCAGCTTCCTCCTACCTTCCTCTCTCCCTC----T
C--CAATCTCCATCTCCGGCCAGAGCCTCGCCACCTACATAAGCAAAATCCGGAGGCATCTATCTTTAAAGAAGTAG---
---AGCAGA--------AGAGAAGAGCAGAGGCGGGGAGTGAGGAGAG----GTATAGCAGAGGAGACGTGTAGGGAC--
------ATGGAGGTGGCGGTGCCTGTCATGGCGCCGAGCGCGCCGTGCAGCCCAAGAACCGCGGCTGCCATGGGCGGCGG
CGGCAGCCACCTGCCC---AGCTACTGCTACTTCTTCTCCAGCGCCCCCACCAGCCCGTCCAGGGCCAGCAGCTACGCCG
CGGACGAGCAGGGCGACGCCGCCACGTTCGACTTCGCCTTCGGGTTCAGCGGGCAGCTCAGGGAGTCCACGCCCATCCTC
GCCGCCGCCGACGAGCTGTTCGAGGGCGGCAGGATCCGTCCGCTCAACGGCCCACGCTCCAGCGGCAGCGGCCTGCTCGC
CGACGAGGACTACGCATCCCTCTCCGTCTCCCCCCGGTCTCCGAGAAGAGCGAGGACGATGTCCGCGGTGCGCGGTGG--
-CGCAGGGGATCGGGCGGAGGTGTCGGCCGATCAGGGTCAGACGAGGGGCAGGTCCGGCCGGCCGGCCCCTGCGTCGTCC
TCGTCGTCGGGCGTGTCGTCTCGCAGCAGGAGGGCCACGCGGTCTCTGTCCCCGTACAGGGGCGACCCGATCGACGACGA
GTTCTGCTCCTCCCCACCCTCCCCCCGCGGCGCCGCCTCCCTGATGCGCGGCTGCGGGAGCGGCAGCCGCAAGTGGCGGC
TCAAGGACCTGTTCCTGTTCCGCAGCGCGTCGGAGGGCCGCGCCACCGCCGGCAAGGACCCGCTGCTCAAGTACAGCATG
CTCAAGAGCGGCGGCGACGCGTCCATGCGGAAGGGGAGGGGCTCGGCGGCGTCGGCCAGCGACATGGCGCCGTACACGGT
GAGCCGGGCGGCGGCCGAGGAGATGCGGCGGAGGACGACGACGCCGCTGCCGTTCCACCGGAACAGCCTCTTCGGCTACT
TCAGGTCCAACCCGGCCATCCACTCCATCAGCCGCAAGCTCAGCAGCTACTCGTCGTCGAACTCCAACCGCGGCCGGAGC
GCCACCGCCGCCGCCAACTGACGGCCGACGACGCAGCTCGCTC----GCCCGCGCGCACATGCATGGC--GCTGGCTACT
TTGGCAGTAGGAAAAAAA--AAAGGAAGAGAACAGTTTTTATTCGTTTGCTCCTGCTTGGTTTGCTCTCCT-GATCTGTA
TTCTTTCTTCA----TGTGTGAATCACCACAAAGGTTTTCATACAAGTGTAGATA-----TGTACCTACGCAGCACATGC
AACTCGCAAATTCTTTGCAAATTTTGCCCGAAAACTCAAGCACGCCTTGAATTTCATTTCACCGGAGTCCAACTCGTTTT
GCCAGAGCTGTGCTGCTAATTCCCCTGAGCGATTAGGCGACCAAACCCTGCATCGGCACACGTATATGA---ATTAATCT
AATGAAAAACCAGGGAGGACGCAGCGCGGCAACATGGGGATACTGTTGTGGGATTCCGTCGGGGTGTGTGAGCGTGATGC
TGCGTGCATGCGATGCGATGCGATGCTCGGTGGATCGATCGATCGGCCTCGGCGGCAAACTGCTGACGCCCTGAGCTGTT
GCGGGGCGTAGTATAATGGTTTCAGGTACACTGCGAACTGTCACAACTGTTTCGTCGAGCTCACCG---CGCCACCGCGG
CGAGCGACGGACGGAATAATCCGGGTTAAGATAAGCTGGCGGATCTGACATTCCCAGAGTTTAAAATTGATGGGGATTGG
ATGATAGTAACCGGCATGATTAGAGCCTTAGAGCT--AGACGAGATGAGCTGAGGTGTTGATGTGTTTGTTACTA-----
-GTGGTAGCGTAGAGACTTGCTCGTTCGGTGATGCAAGCAGGCGCATCACCCATCTGCCTCTCCAAAGATTCTCATCTGA
GCTTTTCTTGCAAAGATTCTCTTTCTTCTCA---AGTAGACAAGTACTCCCTCCGTCCGAAAATACTTGTCATCAAAATA
AACAAAAAGGAATGTATCTAAAACTAAAATACATCTAGATACATCCCCTTTTATTCATTTTGATGACAAGTATTTCCGGA
CGGAGGGAGTAGTGAGTAGTAATTTTCTCTGGCCTGGATTTCAGTTGTTGAATTGTCGGTTGATTGGTTGGGACTGTGAA
G
>chr2D_263
ATTTAGA-------------------------------------------------------------------------
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----------------------------CCAAAATTTTCCTTTATTTTTGTTGGACTTTTTATTGTGGGGGCAAATTTTA
ATCCTTACTCTCCAATTCTGT-TTACCTTTTTTACTTCTGTGTGATCATTAATCTTCTTCAGTTGTTGACAGTTCTTTTT
TTTAAAGATAACTACCCGTTTATTCCAAACGGTTTTGTGTGATCAGTA--------AAGTAAATACAATTCATCTCGCTA
TATACACACATTCACCAACCAATTCATGCGGTCTCTT-ACCGTGCTAGCGGCTGCATGCATGGGAACAAAAAGAGCGTGT
TATTTTCAAACCTCCAAGCAGCTAATTCTCTAACGAACTGTTGATGTCAATCGGATTAAAAACGAGCAAGTTGCGTATAA
GAC-----------------------------------------------------------------------------
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-------------------------------CACATGGTCCATGTCTCGGCGACGGCTTTTAACGTACCCTCCCC---CC
TCTCTCCCTTCAACAATCCCCCCACCCCCACCCCCTACGATCGATCCAGCTTCCTCCTACCTTCCTCTCTCCCTC----T
CTCCAGTCTCCATCTCCGGCCAGAGCCTCGCCACCTACATAAGCAAAATCCGGAGGCATCTATCTTTAAAGAAGTAC---
---AGCATCAGAAGAGGAGAGGAGAGCAGAGGCGGAGAGTGAGGAGAGAGAGGTGTAGCGGAGGAGCCGTAGGTAGGTAG
AGAGAGATGGAGGTGGCGGTGCCTGTCATGGCGCCGAGCGCGCCGTGCAGCCCAAGAACCGCGGCCGCCATGGGCGGCGG
CGGCAGCCACCTGCCC---AGCTACTGCTACTTCTTCTCCAGCGCCCCCACGAGCCCGTCCAGGGCCAGCAGCTACGCCG
CGGACGAGCAGGGCGACGCCGCCACGTTCGACTTCGCCTTCGGCTTCAGCGGGCAGCTCCGGGAGTCCACGCCCATCCTC
GCCGCCGCCGACGAGCTGTTCGAGGGCGGCAGGATCCGGCCGCTCAACGGCCCGCGCTCAAGCGGCAGCGGCCTGCTCGC
CGACGAGGACTACGCCTCCCTCTCCGTCTCCCCCCGGTCGCCGAGAAGAGCGAGGACGATGTCCGCGGTGCGCGGCGG--
-TGCAGGGGATCGGGCGGAGGCGCCGGCCGATCAGGGTCAGACGAGGGGCAGGTCCGGCCGGCCGGCCCCTGCGTCGTCC
TCGTCGTCGGGCGTGTCGTCTCGCAGCAGGAGGGCCACGCGGTCTCTGTCCCCGTACAGGGGCGACCCCATCGACGACGA
GTTCTGCTCCTCCCCACCCTCCCCTCGCGGCGCCGCCTCCCTGATGCGCGGCTGCGGGAGCGGCAGCCGCAAGTGGCGGC
TCAAGGACCTGTTCCTGTTCCGCAGCGCGTCGGAGGGCCGCGCCACCGCCGGCAAGGACCCGCTGCTCAAGTACAGCATG
CTCAAGAGCGGCGGCGACGCGTCGATGCGGAAGGGGAGGGGCTCGGCGGCGTCGGCGAGCGACATGGCGCCGTACACGGT
GAGCCGGGCGGCGGCCGAGGAGATGCGGCGGAGGACGACGACGCCGCTGCCGTTCCACCGGAACAGCCTCTTCGGCTACT
TCCGGTCCAACCCGGCCATCCACTCCATCAGCCGCAAGCTTAGCAGCTACTCCTCGTCGAACTCCAACCGCGGCCGGAAC
GCCGCCGCCGCCGCCAACTGACAGCCGACGACGCAGCTCGCTCGCTCGCTCGCGCGCACATGCATGGCATGCTGGCTACT
TTGGCAGTAGAAAAAAAGGGAAGGAAAGAGAACAG-TTTTATTCGTTTGCTCCTGCTTGGTTCGCCCTCCTCGATCTGTA
TTCTTTCTTTCTTCGTGTGTGAATCACCACAAAGGTTTTCATACAAGTGTAGATAAGCTATGTACCTACG-AGCACATGC
AACTCGCAAATTCTTTGCAAATTTTGCCAAAAAACTCGAGCACACCTTGAATTCC------------------TTG----
--------------------------GAGAGATTGGGCGACCAAACCCTGCATCGGCTCACGTAGATGA---ATTAATCT
AATGAGAAACCAGGGAGGACGCAGCGCGGCAACATGGGGATACTGTTGTGGGATTCCGTCGGGGTGTGTGAGCGTGATGC
TGCGTGCATGCGATGCGATGC-----TCGGTGGATCGATCGATCGGCCTCGGCGGCAAACTGCTGACGCCCTGAGCTGTT
CCGGGGCGTAGTATAATGGTTTCAGGTACACTGCGAACTGTCACAACTGTTTCGTTGAGCTCACCGCATCGCCACCGCGG
CGACGGACGGACGGAATAATCCGGGTTAAGATAAGCTGGCGGATCTGACATTCCCAGAGTTTAAAATTGATGGGGATTGG
ATGCTAGTAACCGGCATGATTAGAGCTTAGCTAGCTGAGATGAGATGAGCTGAGGTGTTGATGTGTTTGTTACTACTAGT
AGTGGTAGCGTAGAGACTTGCTCGTTCGGTGATGCAAGCAGGCGCATCACCCATCTGCCTCTCCAAAGATTCTCATCTGA
GCTTTTCTTGCAAAGATTCTCTTTCTTCTCC---ACTGGACAAG------------------------------------
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---------TTGTGAGTAGTAATTTTCTCTGGCCTGGATTTCAATTGTAGAATTGTC------TTGGTTGGGACTGTGA-
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>chr2A_371
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------------------------------------------------------------AGTTGCTGATTG----TTTT
TTTTAAGATAGTTACCCGCTTATTCCAAACGGTTTTGTATGATCACTA--------AAACAAATACCATTCCTCTCGCTA
C--ACACACATTCACCAACCAATTCATGCGGTCTCTTTACCGTGCTCGCGGCTGCATGCACGGGAACAAAAAGAGCGTGT
TATTTTCAAACCTCCAAGCAGCTAATTCTCTAACGAACTGTTGATGTCAATCGAATTGAAAACGAGCAAGTTGCGCATAA
GAC-----------------------------------------------------------------------------
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-------------------------------CACATGATCGATGTCTCGGCGACGGCTTTTAACGTACCCTCCCC---CC
-CTCTCCCTTCAACCATCCCCCCACCCCC------TACGATCGATCCAGCTTCCTCCTACCTTCCTCTCTCCCTCTCCCT
CTCCAATCTCCATCTCCGGA-----------CACCTACATAAGCAAAATCCGGAGGCATCTATCTTTAAAGAAGTGTAGC
AGAAGAAGA--------GGAGAGGAGCAGGGGCGGGGAGTGAGGAGAG--AGGTGTGGCGGAGGAGCCGTAGCTAGAGAG
AGAGATATGGAGGTGGCGGTTCCTGTCATGGCGCCGAGCGCGCCGTGCAGCCCAAGAACCGCGGCTGCCATGGGCGGCGG
CGGCGGCAGCCATTTACCTAGCTACTGCTACTTCTTCTCCAGCGCCCCCACCAGCCCGTCCAGGGCCAGCAGCTACGCCG
CGGACGAGCAGGGCGACGCCGGGACGTTCGACTTCGCCTTCGGGTTCAGCGGCCAGCTCAGGGAGTCCACGCCCATCCTC
GCCGCCGCCGACGAGCTGTTCGAGGGCGGCAGGATCCGGCCGCTTAACGGCCCCCGCTGCAGCG---GCGGCCTGCTCGC
TGACGAGGACTACGCCTCCCTCTCCGTCTCCCCCCGGTCGCCGAGAAGAGCGAGGACGATGTCCGCGGTGCGCGGCGGCG
GCGCAGGGGATCGGGCTGAGGCGTCGGCCGATCAGGGCCAGACGAGGGGCAGGTCCGGCCGGCCGGCCCCCGCGTCGTCC
TC---GTCGGGCGTGTCGTCCCGGAGCCGGAGGGCCACGCGGTCTCTCTCCCCGTACAGGGGCGACCCGATCGACGACGA
GTTCTGCTCCTCCCCACCCTCCCCGCGCGGCGCCGCCTCCCTGATGCGCGGGTGCGGGAGCGGCAGCCGGAAGTGGCGGC
TCAAGGACCTGTTCCTGTTCCGCAGCGCGTCGGAGGGCCGCGCCACCGCCGGCAAGGACCCGCTGCTCAAGTACAGCATG
CTCAAGAGCGGCGGCGACGCGTCGATGCGGAAGGGGCGGGGCTCGGCGGCGTCGGCCAGCGACATGGCGCCGTACACGGT
GAGCCGGGCGGCGGCCGAGGAGATGCGGCGGAGGACGACGACGCCGCTGCCGTTCCACCGCAACAGCCTCTTCGGCTACT
TCCGGTCCAACCCGGCCATCCACTCCATCAGCCGCAAGCTCAGCAGCTACTCCTCGTCGAACTCCAACCGCGGCCGGAGC
GCCACCGCCGCCGCCAACTGACGGCCGACGACGCAGCTCGCTC----TCCCGCGCGCACATGCATGGCATGCTGGCCACT
TTGGCAGTAGAAGAAAAAAGAAGGAAAGAGAACAG-TTTCATTCGTTTGCTCCCGCTTGGTTCGCCCTCCTCGATCTGTA
TTCTTTCTTTCTTCGTGTGTGAATCACCACAAAGGTTCTCATACAAGTGTAGATAAGCTATGTACCTACGCAGCACATGC
AACTCGCAAATTCTTTGCAAATTTTGCCCAAGAACTCAATCACACCTTGAATCTC------------------TCGTTTT
GCAAGGGCTGT-CTGCTAATTCCATGC-GCGATTAGGCGACCAAACCCTGCATCGGCACACGTATATTGTCGATTAATCT
AATGAGAAACCAGGGAGGACGCAGCGCGGCAACATGGGGACACTGTTGCGGGATTCCGTCGGGGTGTGTGAGCGTGATGC
TGCGTGCATGCGATGGGATGC-----TGGGTGGATGGATCGATCGGGCTCGGCAGCAAGCTGCTGACGCCCTGAGCTGTT
CCGCGGGCGTAGTC---------------------------------------------CTCGCCGCATCGCCACCG---
-----------CGGAATAATCCGGGTTAAGATAAGCTGGCGGATCTGACATTCCCAGAGTTTAAAACTGATGGGGGTTGG
ATGCTAGTAACCGGCATGATTAGAGCCTTAGAGCT--AGCTGAGATGAGCTGAGGTGTTGATGTGTTTGTTACTG-----
-GTGGTAGCGTAGAGACTTGCTCGTTGCATGATGCAAGCAGGCGCATCACCCATCTGCCTCTCCCAAGATTCTCATCTGA
GCTTTTCTTGCAAAGATTCTCTTTCTTCTCATCAACTGGACAAG------------------------------------
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---------TAGCGAGTAGTAATTTTCTCTGGCCTGGATTTCAATCGTGGAATTGTCGGTTGATTGGTTGGGACTGTGGA
G
>SNPs
SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS------SS------------S-SSSSSSS----S-SSS-S---S--------
-------S----SSSSSSSSSS-----S---------S-SSSSSSSSS-S------------------------------
---------------------------S---S----SSS-SSSSSSS-SSSSSSSS---S--------------------
--S-----S-------------------S---------------------------------------------------
-------S------------------------------------------------------------------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------SSS--
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----------------------------------------------------------------------------S---
------------------------------------------------------S----S------S---SSSSS--S--
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--------------------------------------S--------------S--------------------------
---------------S-----------------------S-----------------------------------S----
---------------------S----------------------------------------------------------
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------------------------S-------------------------------------------------------
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-----------------------S--------------------------------------------------------
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--S-------------------------------------------------S---------------------------
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----------S-----------S-S----------S--------------------------S--S--------------
---------SS---------------------------------------------------------------------
-----------------------------S-------------S-----------SSSSSSSSSSSSSSSSSS-------
--S--S-----S-----------SSS------------------------------------------------------
-----S--------------------------------------------------------------------------
---------------------SSSSS------------------------------------------------------
S------------------------------------------------------S------------------------
---SS---------------------------------------------------------------------------
---S------------------------------------S---------------------------------------
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-----------------------------------S-S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS----------------------------------S----S-------------------------------
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>forward_25
-----CAGCAGACCCCTAATGTGCA-------------------------------------------------------
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>reverse_1107
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------------------------------------------------------------------ACGTGTAGGGACAT
GGAGGT--------------------------------------------------------------------------
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>forward_76
--------------------------------------------------------TGCAGCACCTAACACTCAGG----
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>reverse_1111
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----------------------------------------------------------------------GTAGGGACAT
GGAGGTGGC-----------------------------------------------------------------------
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>forward_705
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---------------------------------------------ACACGCTCCTTCCAGCTAAC---------------
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>reverse_2377
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--------------------------------------------------------TTTCACCGGAGTCCAACTCG----
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