Multiple sequence alignment - TraesCS2B01G182100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G182100 chr2B 100.000 2247 0 0 285 2531 157242593 157244839 0.000000e+00 4150.0
1 TraesCS2B01G182100 chr2B 95.470 287 12 1 2082 2368 774874622 774874337 8.250000e-125 457.0
2 TraesCS2B01G182100 chr2B 94.595 296 14 2 2076 2371 799259758 799259465 8.250000e-125 457.0
3 TraesCS2B01G182100 chr2B 100.000 73 0 0 1 73 157242309 157242381 4.390000e-28 135.0
4 TraesCS2B01G182100 chr2D 92.584 1780 90 20 309 2084 106950834 106952575 0.000000e+00 2518.0
5 TraesCS2B01G182100 chr2D 90.769 65 5 1 1796 1860 106952555 106952618 4.490000e-13 86.1
6 TraesCS2B01G182100 chr2A 92.193 1806 73 22 285 2084 103224783 103226526 0.000000e+00 2492.0
7 TraesCS2B01G182100 chr2A 94.576 295 14 2 2075 2368 162455910 162455617 2.970000e-124 455.0
8 TraesCS2B01G182100 chr2A 92.000 75 4 1 1 73 103224693 103224767 1.240000e-18 104.0
9 TraesCS2B01G182100 chr2A 93.333 60 3 1 1801 1860 103226511 103226569 1.250000e-13 87.9
10 TraesCS2B01G182100 chr3B 95.848 289 12 0 2084 2372 17350289 17350577 3.810000e-128 468.0
11 TraesCS2B01G182100 chr1B 95.189 291 13 1 2080 2370 495804249 495803960 2.290000e-125 459.0
12 TraesCS2B01G182100 chr7B 95.760 283 12 0 2084 2366 31801083 31801365 8.250000e-125 457.0
13 TraesCS2B01G182100 chr6B 94.576 295 16 0 2077 2371 65064676 65064970 8.250000e-125 457.0
14 TraesCS2B01G182100 chr5B 94.521 292 14 2 2075 2366 439263998 439263709 1.380000e-122 449.0
15 TraesCS2B01G182100 chr5B 92.357 314 21 3 2074 2386 572909407 572909096 6.420000e-121 444.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G182100 chr2B 157242309 157244839 2530 False 2142.500000 4150 100.000000 1 2531 2 chr2B.!!$F1 2530
1 TraesCS2B01G182100 chr2D 106950834 106952618 1784 False 1302.050000 2518 91.676500 309 2084 2 chr2D.!!$F1 1775
2 TraesCS2B01G182100 chr2A 103224693 103226569 1876 False 894.633333 2492 92.508667 1 2084 3 chr2A.!!$F1 2083

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 308 1.180456 CCTGCTGCCCATGTGACAAA 61.18 55.0 0.0 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2086 2095 0.030235 GTCCCTGGAAACAAACACGC 59.97 55.0 0.0 0.0 42.06 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 38 6.894103 AGAAGAAAAGGAATACAATGCTCCAT 59.106 34.615 0.44 0.00 0.00 3.41
305 308 1.180456 CCTGCTGCCCATGTGACAAA 61.180 55.000 0.00 0.00 0.00 2.83
307 310 1.274167 CTGCTGCCCATGTGACAAATT 59.726 47.619 0.00 0.00 0.00 1.82
320 323 9.248291 CCATGTGACAAATTTAATATGCCTAAC 57.752 33.333 0.00 0.00 0.00 2.34
374 378 3.119319 TGTATTCCCTCTGGGCATGTTA 58.881 45.455 0.00 0.00 43.94 2.41
392 396 8.992073 GGCATGTTATCAGAAAAAGAAAACAAT 58.008 29.630 0.00 0.00 0.00 2.71
561 566 2.703536 TCAGTGGTTGAGAAACCTAGCA 59.296 45.455 8.95 0.00 43.23 3.49
711 716 9.941664 GATCACGAATGATTTTGATCTATTTGT 57.058 29.630 17.07 0.00 46.01 2.83
809 814 6.176896 TCTAACATTAGTTGCATAACTGCCA 58.823 36.000 1.14 0.00 46.28 4.92
925 931 7.976135 AAGATACCAGCAATATAGCTCAAAG 57.024 36.000 0.00 0.00 44.54 2.77
926 932 5.936956 AGATACCAGCAATATAGCTCAAAGC 59.063 40.000 0.00 0.00 44.54 3.51
1458 1467 1.667830 CGTCGACACCTGGTTGCAT 60.668 57.895 17.16 0.00 0.00 3.96
1546 1555 3.127376 TGTGTGATCAATGCGAGATTTGG 59.873 43.478 0.00 0.00 0.00 3.28
1553 1562 0.465097 ATGCGAGATTTGGGCAGAGG 60.465 55.000 0.00 0.00 40.44 3.69
1557 1566 2.939640 GCGAGATTTGGGCAGAGGTTTA 60.940 50.000 0.00 0.00 0.00 2.01
1643 1652 2.076863 GTGCGTACCAAGAATTCTGCT 58.923 47.619 9.17 0.00 0.00 4.24
1658 1667 6.944862 AGAATTCTGCTCCAAACTAGTTTCAT 59.055 34.615 18.00 0.00 0.00 2.57
1659 1668 5.947228 TTCTGCTCCAAACTAGTTTCATG 57.053 39.130 18.00 8.25 0.00 3.07
1660 1669 3.753272 TCTGCTCCAAACTAGTTTCATGC 59.247 43.478 18.00 19.39 0.00 4.06
1661 1670 2.483877 TGCTCCAAACTAGTTTCATGCG 59.516 45.455 18.00 6.75 0.00 4.73
1666 1675 4.024387 TCCAAACTAGTTTCATGCGTGTTC 60.024 41.667 18.00 0.00 0.00 3.18
1675 1684 2.407090 TCATGCGTGTTCTGTTCTCTG 58.593 47.619 5.68 0.00 0.00 3.35
1685 1694 1.625818 TCTGTTCTCTGCCCTTTCTCC 59.374 52.381 0.00 0.00 0.00 3.71
1693 1702 0.909610 TGCCCTTTCTCCGGATGTCT 60.910 55.000 3.57 0.00 0.00 3.41
1694 1703 0.253327 GCCCTTTCTCCGGATGTCTT 59.747 55.000 3.57 0.00 0.00 3.01
1695 1704 1.340114 GCCCTTTCTCCGGATGTCTTT 60.340 52.381 3.57 0.00 0.00 2.52
1712 1721 5.283294 TGTCTTTGTTCATGCTTGAATGTG 58.717 37.500 17.04 8.98 43.49 3.21
1786 1795 5.253330 TGATTGGTCCTGACATAAAAGTCC 58.747 41.667 0.00 0.00 37.73 3.85
1787 1796 3.713826 TGGTCCTGACATAAAAGTCCC 57.286 47.619 0.00 0.00 37.73 4.46
1788 1797 3.256704 TGGTCCTGACATAAAAGTCCCT 58.743 45.455 0.00 0.00 37.73 4.20
1789 1798 3.655777 TGGTCCTGACATAAAAGTCCCTT 59.344 43.478 0.00 0.00 37.73 3.95
1790 1799 4.847512 TGGTCCTGACATAAAAGTCCCTTA 59.152 41.667 0.00 0.00 37.73 2.69
1791 1800 5.491078 TGGTCCTGACATAAAAGTCCCTTAT 59.509 40.000 0.00 0.00 37.73 1.73
1792 1801 6.011981 TGGTCCTGACATAAAAGTCCCTTATT 60.012 38.462 0.00 0.00 37.73 1.40
1793 1802 6.318900 GGTCCTGACATAAAAGTCCCTTATTG 59.681 42.308 0.00 0.00 37.73 1.90
1810 1819 6.183360 CCCTTATTGCCTTATTGGTTCTTGAG 60.183 42.308 0.00 0.00 38.35 3.02
1979 1988 2.224185 CCGTGGTAGCATATAAGTGGCA 60.224 50.000 0.00 0.00 0.00 4.92
1995 2004 0.321653 GGCAGATAACCCATAGGCGG 60.322 60.000 0.00 0.00 36.11 6.13
2078 2087 9.426837 CATAAACACATTTGATTGGTTCTTGAT 57.573 29.630 0.00 0.00 0.00 2.57
2082 2091 8.991243 ACACATTTGATTGGTTCTTGATATTG 57.009 30.769 0.00 0.00 0.00 1.90
2083 2092 8.805175 ACACATTTGATTGGTTCTTGATATTGA 58.195 29.630 0.00 0.00 0.00 2.57
2084 2093 9.297586 CACATTTGATTGGTTCTTGATATTGAG 57.702 33.333 0.00 0.00 0.00 3.02
2085 2094 9.246670 ACATTTGATTGGTTCTTGATATTGAGA 57.753 29.630 0.00 0.00 0.00 3.27
2086 2095 9.731819 CATTTGATTGGTTCTTGATATTGAGAG 57.268 33.333 0.00 0.00 0.00 3.20
2087 2096 6.932356 TGATTGGTTCTTGATATTGAGAGC 57.068 37.500 0.00 0.00 0.00 4.09
2088 2097 5.525012 TGATTGGTTCTTGATATTGAGAGCG 59.475 40.000 0.00 0.00 0.00 5.03
2089 2098 4.471904 TGGTTCTTGATATTGAGAGCGT 57.528 40.909 0.00 0.00 0.00 5.07
2090 2099 4.183865 TGGTTCTTGATATTGAGAGCGTG 58.816 43.478 0.00 0.00 0.00 5.34
2091 2100 4.184629 GGTTCTTGATATTGAGAGCGTGT 58.815 43.478 0.00 0.00 0.00 4.49
2092 2101 4.631813 GGTTCTTGATATTGAGAGCGTGTT 59.368 41.667 0.00 0.00 0.00 3.32
2093 2102 5.122396 GGTTCTTGATATTGAGAGCGTGTTT 59.878 40.000 0.00 0.00 0.00 2.83
2094 2103 5.784750 TCTTGATATTGAGAGCGTGTTTG 57.215 39.130 0.00 0.00 0.00 2.93
2095 2104 5.237815 TCTTGATATTGAGAGCGTGTTTGT 58.762 37.500 0.00 0.00 0.00 2.83
2096 2105 5.700832 TCTTGATATTGAGAGCGTGTTTGTT 59.299 36.000 0.00 0.00 0.00 2.83
2097 2106 5.940192 TGATATTGAGAGCGTGTTTGTTT 57.060 34.783 0.00 0.00 0.00 2.83
2098 2107 5.927030 TGATATTGAGAGCGTGTTTGTTTC 58.073 37.500 0.00 0.00 0.00 2.78
2099 2108 3.626028 ATTGAGAGCGTGTTTGTTTCC 57.374 42.857 0.00 0.00 0.00 3.13
2100 2109 2.031258 TGAGAGCGTGTTTGTTTCCA 57.969 45.000 0.00 0.00 0.00 3.53
2101 2110 1.939934 TGAGAGCGTGTTTGTTTCCAG 59.060 47.619 0.00 0.00 0.00 3.86
2102 2111 1.264288 GAGAGCGTGTTTGTTTCCAGG 59.736 52.381 0.00 0.00 0.00 4.45
2103 2112 0.310854 GAGCGTGTTTGTTTCCAGGG 59.689 55.000 0.00 0.00 0.00 4.45
2104 2113 0.106918 AGCGTGTTTGTTTCCAGGGA 60.107 50.000 0.00 0.00 0.00 4.20
2105 2114 0.030235 GCGTGTTTGTTTCCAGGGAC 59.970 55.000 0.00 0.00 0.00 4.46
2106 2115 1.675552 CGTGTTTGTTTCCAGGGACT 58.324 50.000 0.00 0.00 43.88 3.85
2107 2116 2.021457 CGTGTTTGTTTCCAGGGACTT 58.979 47.619 0.00 0.00 34.60 3.01
2108 2117 3.207778 CGTGTTTGTTTCCAGGGACTTA 58.792 45.455 0.00 0.00 34.60 2.24
2109 2118 3.818773 CGTGTTTGTTTCCAGGGACTTAT 59.181 43.478 0.00 0.00 34.60 1.73
2110 2119 4.277423 CGTGTTTGTTTCCAGGGACTTATT 59.723 41.667 0.00 0.00 34.60 1.40
2111 2120 5.528870 GTGTTTGTTTCCAGGGACTTATTG 58.471 41.667 0.00 0.00 34.60 1.90
2112 2121 4.586841 TGTTTGTTTCCAGGGACTTATTGG 59.413 41.667 0.00 0.00 34.60 3.16
2113 2122 2.802719 TGTTTCCAGGGACTTATTGGC 58.197 47.619 0.00 0.00 34.60 4.52
2114 2123 2.378547 TGTTTCCAGGGACTTATTGGCT 59.621 45.455 0.00 0.00 34.60 4.75
2115 2124 3.181423 TGTTTCCAGGGACTTATTGGCTT 60.181 43.478 0.00 0.00 34.60 4.35
2116 2125 4.043561 TGTTTCCAGGGACTTATTGGCTTA 59.956 41.667 0.00 0.00 34.60 3.09
2117 2126 4.503714 TTCCAGGGACTTATTGGCTTAG 57.496 45.455 0.00 0.00 34.60 2.18
2118 2127 2.777692 TCCAGGGACTTATTGGCTTAGG 59.222 50.000 0.00 0.00 34.60 2.69
2119 2128 2.158608 CCAGGGACTTATTGGCTTAGGG 60.159 54.545 0.00 0.00 34.60 3.53
2120 2129 2.777692 CAGGGACTTATTGGCTTAGGGA 59.222 50.000 0.00 0.00 34.60 4.20
2121 2130 2.778270 AGGGACTTATTGGCTTAGGGAC 59.222 50.000 0.00 0.00 27.25 4.46
2122 2131 2.778270 GGGACTTATTGGCTTAGGGACT 59.222 50.000 0.00 0.00 46.37 3.85
2123 2132 3.202373 GGGACTTATTGGCTTAGGGACTT 59.798 47.826 0.00 0.00 41.75 3.01
2124 2133 4.411212 GGGACTTATTGGCTTAGGGACTTA 59.589 45.833 0.00 0.00 41.75 2.24
2125 2134 5.104235 GGGACTTATTGGCTTAGGGACTTAA 60.104 44.000 0.00 0.00 41.75 1.85
2126 2135 6.420638 GGACTTATTGGCTTAGGGACTTAAA 58.579 40.000 0.00 0.00 41.75 1.52
2127 2136 6.888088 GGACTTATTGGCTTAGGGACTTAAAA 59.112 38.462 0.00 0.00 41.75 1.52
2128 2137 7.395206 GGACTTATTGGCTTAGGGACTTAAAAA 59.605 37.037 0.00 0.00 41.75 1.94
2153 2162 9.682465 AAAGTTTCTATAACTCCCATCTAAACC 57.318 33.333 0.00 0.00 0.00 3.27
2154 2163 8.388656 AGTTTCTATAACTCCCATCTAAACCA 57.611 34.615 0.00 0.00 0.00 3.67
2155 2164 8.832735 AGTTTCTATAACTCCCATCTAAACCAA 58.167 33.333 0.00 0.00 0.00 3.67
2156 2165 9.457436 GTTTCTATAACTCCCATCTAAACCAAA 57.543 33.333 0.00 0.00 0.00 3.28
2157 2166 9.457436 TTTCTATAACTCCCATCTAAACCAAAC 57.543 33.333 0.00 0.00 0.00 2.93
2158 2167 8.153221 TCTATAACTCCCATCTAAACCAAACA 57.847 34.615 0.00 0.00 0.00 2.83
2159 2168 8.265055 TCTATAACTCCCATCTAAACCAAACAG 58.735 37.037 0.00 0.00 0.00 3.16
2160 2169 4.034285 ACTCCCATCTAAACCAAACAGG 57.966 45.455 0.00 0.00 45.67 4.00
2161 2170 3.655777 ACTCCCATCTAAACCAAACAGGA 59.344 43.478 0.00 0.00 41.22 3.86
2162 2171 4.263506 ACTCCCATCTAAACCAAACAGGAG 60.264 45.833 0.00 0.00 43.24 3.69
2163 2172 3.010138 TCCCATCTAAACCAAACAGGAGG 59.990 47.826 0.00 0.00 41.22 4.30
2164 2173 3.356290 CCATCTAAACCAAACAGGAGGG 58.644 50.000 0.00 0.00 41.22 4.30
2165 2174 3.010138 CCATCTAAACCAAACAGGAGGGA 59.990 47.826 0.00 0.00 41.22 4.20
2166 2175 3.782656 TCTAAACCAAACAGGAGGGAC 57.217 47.619 0.00 0.00 41.22 4.46
2168 2177 3.720002 TCTAAACCAAACAGGAGGGACTT 59.280 43.478 0.00 0.00 41.55 3.01
2169 2178 4.909088 TCTAAACCAAACAGGAGGGACTTA 59.091 41.667 0.00 0.00 41.55 2.24
2170 2179 4.741928 AAACCAAACAGGAGGGACTTAT 57.258 40.909 0.00 0.00 41.55 1.73
2171 2180 5.853572 AAACCAAACAGGAGGGACTTATA 57.146 39.130 0.00 0.00 41.55 0.98
2172 2181 5.437191 AACCAAACAGGAGGGACTTATAG 57.563 43.478 0.00 0.00 41.55 1.31
2173 2182 3.780850 ACCAAACAGGAGGGACTTATAGG 59.219 47.826 0.00 0.00 41.55 2.57
2174 2183 3.136626 CCAAACAGGAGGGACTTATAGGG 59.863 52.174 0.00 0.00 41.55 3.53
2175 2184 4.037927 CAAACAGGAGGGACTTATAGGGA 58.962 47.826 0.00 0.00 41.55 4.20
2176 2185 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
2177 2186 2.866454 ACAGGAGGGACTTATAGGGACT 59.134 50.000 0.00 0.00 41.55 3.85
2178 2187 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
2179 2188 4.485021 ACAGGAGGGACTTATAGGGACTTA 59.515 45.833 0.00 0.00 41.55 2.24
2180 2189 5.042827 ACAGGAGGGACTTATAGGGACTTAA 60.043 44.000 0.00 0.00 41.55 1.85
2181 2190 5.903589 CAGGAGGGACTTATAGGGACTTAAA 59.096 44.000 0.00 0.00 41.55 1.52
2182 2191 6.042208 CAGGAGGGACTTATAGGGACTTAAAG 59.958 46.154 0.00 0.00 41.55 1.85
2183 2192 5.904169 GGAGGGACTTATAGGGACTTAAAGT 59.096 44.000 0.00 0.00 42.31 2.66
2184 2193 6.183360 GGAGGGACTTATAGGGACTTAAAGTG 60.183 46.154 0.00 0.00 40.60 3.16
2185 2194 5.666265 AGGGACTTATAGGGACTTAAAGTGG 59.334 44.000 0.00 0.00 40.60 4.00
2186 2195 5.163227 GGGACTTATAGGGACTTAAAGTGGG 60.163 48.000 0.00 0.00 40.60 4.61
2187 2196 5.366460 GACTTATAGGGACTTAAAGTGGGC 58.634 45.833 0.00 0.00 40.60 5.36
2188 2197 4.786454 ACTTATAGGGACTTAAAGTGGGCA 59.214 41.667 0.00 0.00 39.58 5.36
2189 2198 5.432060 ACTTATAGGGACTTAAAGTGGGCAT 59.568 40.000 0.00 0.00 39.58 4.40
2190 2199 4.881157 ATAGGGACTTAAAGTGGGCATT 57.119 40.909 0.00 0.00 41.75 3.56
2191 2200 3.542969 AGGGACTTAAAGTGGGCATTT 57.457 42.857 0.00 0.00 27.25 2.32
2192 2201 3.165071 AGGGACTTAAAGTGGGCATTTG 58.835 45.455 0.00 0.00 27.25 2.32
2193 2202 2.233676 GGGACTTAAAGTGGGCATTTGG 59.766 50.000 0.00 0.00 0.00 3.28
2194 2203 2.233676 GGACTTAAAGTGGGCATTTGGG 59.766 50.000 0.00 0.00 0.00 4.12
2195 2204 3.161866 GACTTAAAGTGGGCATTTGGGA 58.838 45.455 0.00 0.00 0.00 4.37
2196 2205 2.897326 ACTTAAAGTGGGCATTTGGGAC 59.103 45.455 0.00 0.00 0.00 4.46
2197 2206 2.990740 TAAAGTGGGCATTTGGGACT 57.009 45.000 0.00 0.00 0.00 3.85
2198 2207 2.101640 AAAGTGGGCATTTGGGACTT 57.898 45.000 0.00 0.00 0.00 3.01
2199 2208 2.990740 AAGTGGGCATTTGGGACTTA 57.009 45.000 0.00 0.00 0.00 2.24
2200 2209 3.473113 AAGTGGGCATTTGGGACTTAT 57.527 42.857 0.00 0.00 0.00 1.73
2201 2210 2.738743 AGTGGGCATTTGGGACTTATG 58.261 47.619 0.00 0.00 0.00 1.90
2202 2211 2.311542 AGTGGGCATTTGGGACTTATGA 59.688 45.455 0.00 0.00 0.00 2.15
2203 2212 3.096092 GTGGGCATTTGGGACTTATGAA 58.904 45.455 0.00 0.00 0.00 2.57
2204 2213 3.513515 GTGGGCATTTGGGACTTATGAAA 59.486 43.478 0.00 0.00 0.00 2.69
2205 2214 4.162131 GTGGGCATTTGGGACTTATGAAAT 59.838 41.667 0.00 0.00 0.00 2.17
2206 2215 5.362430 GTGGGCATTTGGGACTTATGAAATA 59.638 40.000 0.00 0.00 0.00 1.40
2207 2216 5.960811 TGGGCATTTGGGACTTATGAAATAA 59.039 36.000 0.00 0.00 36.20 1.40
2222 2231 5.683876 TGAAATAAGACTCTCAAGGAGGG 57.316 43.478 0.00 0.00 45.83 4.30
2223 2232 5.342017 TGAAATAAGACTCTCAAGGAGGGA 58.658 41.667 0.00 0.00 45.83 4.20
2224 2233 5.187967 TGAAATAAGACTCTCAAGGAGGGAC 59.812 44.000 0.00 0.00 45.83 4.46
2225 2234 4.618378 ATAAGACTCTCAAGGAGGGACT 57.382 45.455 0.00 0.00 45.83 3.85
2226 2235 3.268034 AAGACTCTCAAGGAGGGACTT 57.732 47.619 5.25 5.25 45.83 3.01
2227 2236 4.405756 AAGACTCTCAAGGAGGGACTTA 57.594 45.455 8.68 0.00 41.64 2.24
2228 2237 4.618378 AGACTCTCAAGGAGGGACTTAT 57.382 45.455 0.00 0.00 45.83 1.73
2229 2238 5.735733 AGACTCTCAAGGAGGGACTTATA 57.264 43.478 0.00 0.00 45.83 0.98
2230 2239 5.701224 AGACTCTCAAGGAGGGACTTATAG 58.299 45.833 0.00 0.00 45.83 1.31
2231 2240 5.433712 AGACTCTCAAGGAGGGACTTATAGA 59.566 44.000 0.00 0.00 45.83 1.98
2232 2241 5.701224 ACTCTCAAGGAGGGACTTATAGAG 58.299 45.833 0.00 12.32 45.83 2.43
2233 2242 5.433712 ACTCTCAAGGAGGGACTTATAGAGA 59.566 44.000 17.33 8.44 45.83 3.10
2234 2243 5.697067 TCTCAAGGAGGGACTTATAGAGAC 58.303 45.833 0.00 0.00 41.55 3.36
2235 2244 5.433712 TCTCAAGGAGGGACTTATAGAGACT 59.566 44.000 0.00 0.00 41.55 3.24
2236 2245 6.068735 TCTCAAGGAGGGACTTATAGAGACTT 60.069 42.308 0.00 0.00 41.55 3.01
2237 2246 7.129038 TCTCAAGGAGGGACTTATAGAGACTTA 59.871 40.741 0.00 0.00 41.55 2.24
2238 2247 7.827787 TCAAGGAGGGACTTATAGAGACTTAT 58.172 38.462 0.00 0.00 41.55 1.73
2239 2248 8.956860 TCAAGGAGGGACTTATAGAGACTTATA 58.043 37.037 0.00 0.00 41.55 0.98
2240 2249 9.589461 CAAGGAGGGACTTATAGAGACTTATAA 57.411 37.037 0.00 0.00 41.55 0.98
2280 2289 3.210232 GGGCTTATAAGTCCCAGGAAC 57.790 52.381 27.03 5.99 45.13 3.62
2281 2290 2.158652 GGGCTTATAAGTCCCAGGAACC 60.159 54.545 27.03 13.03 45.13 3.62
2282 2291 2.508300 GGCTTATAAGTCCCAGGAACCA 59.492 50.000 13.91 0.00 0.00 3.67
2283 2292 3.053917 GGCTTATAAGTCCCAGGAACCAA 60.054 47.826 13.91 0.00 0.00 3.67
2284 2293 4.569015 GGCTTATAAGTCCCAGGAACCAAA 60.569 45.833 13.91 0.00 0.00 3.28
2285 2294 4.398358 GCTTATAAGTCCCAGGAACCAAAC 59.602 45.833 13.91 0.00 0.00 2.93
2286 2295 5.566469 CTTATAAGTCCCAGGAACCAAACA 58.434 41.667 4.18 0.00 0.00 2.83
2287 2296 2.364972 AAGTCCCAGGAACCAAACAG 57.635 50.000 0.00 0.00 0.00 3.16
2288 2297 0.478507 AGTCCCAGGAACCAAACAGG 59.521 55.000 0.00 0.00 45.67 4.00
2302 2311 5.959618 CCAAACAGGTAGGGACTTTTTAG 57.040 43.478 0.00 0.00 41.75 1.85
2303 2312 4.765339 CCAAACAGGTAGGGACTTTTTAGG 59.235 45.833 0.00 0.00 41.75 2.69
2304 2313 4.652679 AACAGGTAGGGACTTTTTAGGG 57.347 45.455 0.00 0.00 41.75 3.53
2305 2314 3.878086 ACAGGTAGGGACTTTTTAGGGA 58.122 45.455 0.00 0.00 41.75 4.20
2306 2315 3.586174 ACAGGTAGGGACTTTTTAGGGAC 59.414 47.826 0.00 0.00 41.75 4.46
2307 2316 3.844804 CAGGTAGGGACTTTTTAGGGACT 59.155 47.826 0.00 0.00 41.75 3.85
2308 2317 4.288887 CAGGTAGGGACTTTTTAGGGACTT 59.711 45.833 0.00 0.00 39.49 3.01
2309 2318 4.288887 AGGTAGGGACTTTTTAGGGACTTG 59.711 45.833 0.00 0.00 39.49 3.16
2310 2319 3.808834 AGGGACTTTTTAGGGACTTGG 57.191 47.619 0.00 0.00 34.75 3.61
2311 2320 2.378886 AGGGACTTTTTAGGGACTTGGG 59.621 50.000 0.00 0.00 34.75 4.12
2312 2321 2.377531 GGGACTTTTTAGGGACTTGGGA 59.622 50.000 0.00 0.00 41.75 4.37
2313 2322 3.418995 GGACTTTTTAGGGACTTGGGAC 58.581 50.000 0.00 0.00 41.75 4.46
2314 2323 3.074094 GGACTTTTTAGGGACTTGGGACT 59.926 47.826 0.00 0.00 41.75 3.85
2315 2324 4.447325 GGACTTTTTAGGGACTTGGGACTT 60.447 45.833 0.00 0.00 41.75 3.01
2316 2325 5.221986 GGACTTTTTAGGGACTTGGGACTTA 60.222 44.000 0.00 0.00 41.75 2.24
2317 2326 6.464530 ACTTTTTAGGGACTTGGGACTTAT 57.535 37.500 0.00 0.00 41.75 1.73
2318 2327 7.311486 GGACTTTTTAGGGACTTGGGACTTATA 60.311 40.741 0.00 0.00 41.75 0.98
2319 2328 7.992295 ACTTTTTAGGGACTTGGGACTTATAA 58.008 34.615 0.00 0.00 41.75 0.98
2320 2329 8.107729 ACTTTTTAGGGACTTGGGACTTATAAG 58.892 37.037 11.05 11.05 41.75 1.73
2321 2330 7.578458 TTTTAGGGACTTGGGACTTATAAGT 57.422 36.000 18.05 18.05 40.66 2.24
2322 2331 7.578458 TTTAGGGACTTGGGACTTATAAGTT 57.422 36.000 18.96 2.29 38.78 2.66
2323 2332 5.437191 AGGGACTTGGGACTTATAAGTTG 57.563 43.478 18.96 9.81 34.84 3.16
2324 2333 4.227527 AGGGACTTGGGACTTATAAGTTGG 59.772 45.833 18.96 10.07 34.84 3.77
2325 2334 4.524053 GGACTTGGGACTTATAAGTTGGG 58.476 47.826 18.96 10.37 39.88 4.12
2326 2335 4.226620 GGACTTGGGACTTATAAGTTGGGA 59.773 45.833 18.96 6.15 39.88 4.37
2327 2336 5.175388 ACTTGGGACTTATAAGTTGGGAC 57.825 43.478 18.96 6.19 39.88 4.46
2328 2337 4.850386 ACTTGGGACTTATAAGTTGGGACT 59.150 41.667 18.96 0.00 39.88 3.85
2329 2338 6.027482 ACTTGGGACTTATAAGTTGGGACTA 58.973 40.000 18.96 3.96 39.88 2.59
2330 2339 6.502863 ACTTGGGACTTATAAGTTGGGACTAA 59.497 38.462 18.96 10.32 39.88 2.24
2331 2340 6.956102 TGGGACTTATAAGTTGGGACTAAA 57.044 37.500 18.96 0.00 39.88 1.85
2332 2341 7.332433 TGGGACTTATAAGTTGGGACTAAAA 57.668 36.000 18.96 0.00 39.88 1.52
2333 2342 7.757611 TGGGACTTATAAGTTGGGACTAAAAA 58.242 34.615 18.96 0.00 39.88 1.94
2359 2368 4.868734 GTCCTAGGACTTATGAACCAAACG 59.131 45.833 31.12 0.00 41.57 3.60
2360 2369 4.081309 TCCTAGGACTTATGAACCAAACGG 60.081 45.833 7.62 0.00 0.00 4.44
2361 2370 3.067684 AGGACTTATGAACCAAACGGG 57.932 47.619 0.00 0.00 44.81 5.28
2362 2371 2.089201 GGACTTATGAACCAAACGGGG 58.911 52.381 0.00 0.00 42.91 5.73
2363 2372 1.471287 GACTTATGAACCAAACGGGGC 59.529 52.381 0.00 0.00 42.91 5.80
2364 2373 0.815095 CTTATGAACCAAACGGGGCC 59.185 55.000 0.00 0.00 42.91 5.80
2411 2420 5.342806 TCATAGTCAACGTGCTTTCTTTG 57.657 39.130 0.00 0.00 0.00 2.77
2412 2421 4.213270 TCATAGTCAACGTGCTTTCTTTGG 59.787 41.667 0.00 0.00 0.00 3.28
2413 2422 2.365582 AGTCAACGTGCTTTCTTTGGT 58.634 42.857 0.00 0.00 0.00 3.67
2414 2423 2.752903 AGTCAACGTGCTTTCTTTGGTT 59.247 40.909 0.00 0.00 0.00 3.67
2415 2424 3.192633 AGTCAACGTGCTTTCTTTGGTTT 59.807 39.130 0.00 0.00 0.00 3.27
2416 2425 3.924073 GTCAACGTGCTTTCTTTGGTTTT 59.076 39.130 0.00 0.00 0.00 2.43
2417 2426 4.387559 GTCAACGTGCTTTCTTTGGTTTTT 59.612 37.500 0.00 0.00 0.00 1.94
2434 2443 3.658757 TTTTTGAAGAAATCCCGGCTG 57.341 42.857 0.00 0.00 0.00 4.85
2435 2444 2.577606 TTTGAAGAAATCCCGGCTGA 57.422 45.000 0.00 0.00 0.00 4.26
2436 2445 2.113860 TTGAAGAAATCCCGGCTGAG 57.886 50.000 0.00 0.00 0.00 3.35
2437 2446 0.253044 TGAAGAAATCCCGGCTGAGG 59.747 55.000 0.00 0.00 0.00 3.86
2438 2447 1.077429 AAGAAATCCCGGCTGAGGC 60.077 57.895 0.00 0.00 37.82 4.70
2449 2458 2.785868 GCTGAGGCCTACCATGTTG 58.214 57.895 4.42 0.00 39.06 3.33
2450 2459 0.749454 GCTGAGGCCTACCATGTTGG 60.749 60.000 4.42 0.00 45.02 3.77
2465 2474 3.574952 TGGTTGACCACTCTGGGG 58.425 61.111 0.00 0.00 43.37 4.96
2466 2475 2.034221 GGTTGACCACTCTGGGGC 59.966 66.667 0.00 0.00 43.37 5.80
2467 2476 2.529744 GGTTGACCACTCTGGGGCT 61.530 63.158 0.00 0.00 43.37 5.19
2468 2477 1.302832 GTTGACCACTCTGGGGCTG 60.303 63.158 0.00 0.00 43.37 4.85
2469 2478 2.528818 TTGACCACTCTGGGGCTGG 61.529 63.158 0.00 0.00 43.37 4.85
2470 2479 4.416738 GACCACTCTGGGGCTGGC 62.417 72.222 0.00 0.00 43.37 4.85
2472 2481 4.729918 CCACTCTGGGGCTGGCAC 62.730 72.222 2.88 0.00 32.67 5.01
2473 2482 3.644606 CACTCTGGGGCTGGCACT 61.645 66.667 4.70 0.00 0.00 4.40
2474 2483 3.644606 ACTCTGGGGCTGGCACTG 61.645 66.667 4.70 4.26 0.00 3.66
2475 2484 3.324930 CTCTGGGGCTGGCACTGA 61.325 66.667 12.29 12.29 0.00 3.41
2476 2485 3.618780 CTCTGGGGCTGGCACTGAC 62.619 68.421 8.97 0.00 33.10 3.51
2481 2490 2.036256 GGCTGGCACTGACCCAAT 59.964 61.111 0.00 0.00 30.66 3.16
2482 2491 1.302949 GGCTGGCACTGACCCAATA 59.697 57.895 0.00 0.00 30.66 1.90
2483 2492 0.749454 GGCTGGCACTGACCCAATAG 60.749 60.000 0.00 0.00 30.66 1.73
2484 2493 0.749454 GCTGGCACTGACCCAATAGG 60.749 60.000 0.00 0.00 43.78 2.57
2497 2506 2.889512 CCAATAGGGATTAAAGGGGCC 58.110 52.381 0.00 0.00 40.01 5.80
2498 2507 2.450886 CCAATAGGGATTAAAGGGGCCT 59.549 50.000 0.84 0.00 40.01 5.19
2499 2508 3.500471 CCAATAGGGATTAAAGGGGCCTC 60.500 52.174 0.84 0.00 40.01 4.70
2500 2509 1.430992 TAGGGATTAAAGGGGCCTCG 58.569 55.000 0.84 0.00 0.00 4.63
2501 2510 0.623617 AGGGATTAAAGGGGCCTCGT 60.624 55.000 0.84 0.00 0.00 4.18
2502 2511 0.179026 GGGATTAAAGGGGCCTCGTC 60.179 60.000 0.84 0.00 0.00 4.20
2503 2512 0.837940 GGATTAAAGGGGCCTCGTCT 59.162 55.000 0.84 0.00 0.00 4.18
2504 2513 1.212195 GGATTAAAGGGGCCTCGTCTT 59.788 52.381 0.84 0.00 0.00 3.01
2505 2514 2.289565 GATTAAAGGGGCCTCGTCTTG 58.710 52.381 0.84 0.00 0.00 3.02
2506 2515 0.322187 TTAAAGGGGCCTCGTCTTGC 60.322 55.000 0.84 0.00 0.00 4.01
2507 2516 2.515996 TAAAGGGGCCTCGTCTTGCG 62.516 60.000 0.84 0.00 43.01 4.85
2511 2520 4.388499 GGCCTCGTCTTGCGGGAA 62.388 66.667 0.00 0.00 45.67 3.97
2512 2521 2.125106 GCCTCGTCTTGCGGGAAT 60.125 61.111 0.00 0.00 45.67 3.01
2513 2522 1.745489 GCCTCGTCTTGCGGGAATT 60.745 57.895 0.00 0.00 45.67 2.17
2514 2523 1.305930 GCCTCGTCTTGCGGGAATTT 61.306 55.000 0.00 0.00 45.67 1.82
2515 2524 0.447801 CCTCGTCTTGCGGGAATTTG 59.552 55.000 0.00 0.00 45.67 2.32
2516 2525 0.447801 CTCGTCTTGCGGGAATTTGG 59.552 55.000 0.00 0.00 45.67 3.28
2517 2526 0.035598 TCGTCTTGCGGGAATTTGGA 59.964 50.000 0.00 0.00 41.72 3.53
2518 2527 0.447801 CGTCTTGCGGGAATTTGGAG 59.552 55.000 0.00 0.00 36.85 3.86
2519 2528 1.534729 GTCTTGCGGGAATTTGGAGT 58.465 50.000 0.00 0.00 0.00 3.85
2520 2529 1.886542 GTCTTGCGGGAATTTGGAGTT 59.113 47.619 0.00 0.00 0.00 3.01
2521 2530 2.296190 GTCTTGCGGGAATTTGGAGTTT 59.704 45.455 0.00 0.00 0.00 2.66
2522 2531 2.556622 TCTTGCGGGAATTTGGAGTTTC 59.443 45.455 0.00 0.00 0.00 2.78
2523 2532 1.988293 TGCGGGAATTTGGAGTTTCA 58.012 45.000 0.00 0.00 0.00 2.69
2524 2533 1.611491 TGCGGGAATTTGGAGTTTCAC 59.389 47.619 0.00 0.00 0.00 3.18
2525 2534 1.611491 GCGGGAATTTGGAGTTTCACA 59.389 47.619 0.00 0.00 0.00 3.58
2526 2535 2.231235 GCGGGAATTTGGAGTTTCACAT 59.769 45.455 0.00 0.00 0.00 3.21
2527 2536 3.306019 GCGGGAATTTGGAGTTTCACATT 60.306 43.478 0.00 0.00 0.00 2.71
2528 2537 4.799255 GCGGGAATTTGGAGTTTCACATTT 60.799 41.667 0.00 0.00 0.00 2.32
2529 2538 5.296748 CGGGAATTTGGAGTTTCACATTTT 58.703 37.500 0.00 0.00 0.00 1.82
2530 2539 5.757808 CGGGAATTTGGAGTTTCACATTTTT 59.242 36.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 14 6.515272 TGGAGCATTGTATTCCTTTTCTTC 57.485 37.500 0.00 0.00 32.12 2.87
19 22 3.005155 GGCTTCATGGAGCATTGTATTCC 59.995 47.826 27.19 2.82 44.49 3.01
28 31 0.175760 GTAGTCGGCTTCATGGAGCA 59.824 55.000 27.19 5.00 44.49 4.26
35 38 2.483745 CGCGAGTAGTCGGCTTCA 59.516 61.111 20.94 0.00 46.91 3.02
288 291 1.340088 AATTTGTCACATGGGCAGCA 58.660 45.000 0.00 0.00 0.00 4.41
294 297 9.248291 GTTAGGCATATTAAATTTGTCACATGG 57.752 33.333 0.00 0.00 0.00 3.66
320 323 6.595716 CAGGAAATAGAGGGCCTTATTAATCG 59.404 42.308 7.89 1.66 0.00 3.34
392 396 6.601332 GGATATATCCTGGAGTGTTTTTCCA 58.399 40.000 22.50 0.00 43.73 3.53
561 566 7.115378 CGTCTCGTAGGTTAACAATTACAACTT 59.885 37.037 8.10 0.00 0.00 2.66
596 601 3.122369 GATGGCCCTTTCATCCTGG 57.878 57.895 0.00 0.00 36.06 4.45
636 641 6.713762 TTTATGGCCATTGTTCTTATCCAG 57.286 37.500 26.37 0.00 0.00 3.86
711 716 6.183360 TGCATAACACGGTACACTGGAATATA 60.183 38.462 0.00 0.00 0.00 0.86
924 930 2.741598 GCTCGTCTGCAAGCTGCT 60.742 61.111 0.00 0.00 45.31 4.24
925 931 2.741598 AGCTCGTCTGCAAGCTGC 60.742 61.111 9.80 0.39 46.78 5.25
1458 1467 1.774217 AGGGCAAGTGGAGTGGGAA 60.774 57.895 0.00 0.00 0.00 3.97
1494 1503 1.078356 GTCTTTCGAAGGGGGCTCC 60.078 63.158 7.49 0.00 0.00 4.70
1546 1555 3.545703 ACATAGCACATAAACCTCTGCC 58.454 45.455 0.00 0.00 0.00 4.85
1643 1652 3.472652 ACACGCATGAAACTAGTTTGGA 58.527 40.909 25.17 11.80 32.11 3.53
1658 1667 0.880278 GGCAGAGAACAGAACACGCA 60.880 55.000 0.00 0.00 0.00 5.24
1659 1668 1.569479 GGGCAGAGAACAGAACACGC 61.569 60.000 0.00 0.00 0.00 5.34
1660 1669 0.034059 AGGGCAGAGAACAGAACACG 59.966 55.000 0.00 0.00 0.00 4.49
1661 1670 2.262423 AAGGGCAGAGAACAGAACAC 57.738 50.000 0.00 0.00 0.00 3.32
1666 1675 1.674221 CGGAGAAAGGGCAGAGAACAG 60.674 57.143 0.00 0.00 0.00 3.16
1675 1684 0.253327 AAGACATCCGGAGAAAGGGC 59.747 55.000 11.34 0.00 0.00 5.19
1685 1694 3.189080 TCAAGCATGAACAAAGACATCCG 59.811 43.478 0.00 0.00 30.99 4.18
1712 1721 2.961062 CACAATTGATCCTCCCCAATCC 59.039 50.000 13.59 0.00 32.36 3.01
1786 1795 6.603201 TCTCAAGAACCAATAAGGCAATAAGG 59.397 38.462 0.00 0.00 43.14 2.69
1787 1796 7.630242 TCTCAAGAACCAATAAGGCAATAAG 57.370 36.000 0.00 0.00 43.14 1.73
1788 1797 8.469200 CAATCTCAAGAACCAATAAGGCAATAA 58.531 33.333 0.00 0.00 43.14 1.40
1789 1798 7.833682 TCAATCTCAAGAACCAATAAGGCAATA 59.166 33.333 0.00 0.00 43.14 1.90
1790 1799 6.664816 TCAATCTCAAGAACCAATAAGGCAAT 59.335 34.615 0.00 0.00 43.14 3.56
1791 1800 6.009589 TCAATCTCAAGAACCAATAAGGCAA 58.990 36.000 0.00 0.00 43.14 4.52
1792 1801 5.415701 GTCAATCTCAAGAACCAATAAGGCA 59.584 40.000 0.00 0.00 43.14 4.75
1793 1802 5.649831 AGTCAATCTCAAGAACCAATAAGGC 59.350 40.000 0.00 0.00 43.14 4.35
1964 1973 5.546110 TGGGTTATCTGCCACTTATATGCTA 59.454 40.000 0.00 0.00 0.00 3.49
1979 1988 1.420138 CCAACCGCCTATGGGTTATCT 59.580 52.381 0.00 0.00 45.74 1.98
1995 2004 1.815866 CCGCAATCCCAATCCCAAC 59.184 57.895 0.00 0.00 0.00 3.77
2078 2087 4.130857 TGGAAACAAACACGCTCTCAATA 58.869 39.130 0.00 0.00 37.44 1.90
2081 2090 1.939934 CTGGAAACAAACACGCTCTCA 59.060 47.619 0.00 0.00 42.06 3.27
2082 2091 1.264288 CCTGGAAACAAACACGCTCTC 59.736 52.381 0.00 0.00 42.06 3.20
2083 2092 1.308998 CCTGGAAACAAACACGCTCT 58.691 50.000 0.00 0.00 42.06 4.09
2084 2093 0.310854 CCCTGGAAACAAACACGCTC 59.689 55.000 0.00 0.00 42.06 5.03
2085 2094 0.106918 TCCCTGGAAACAAACACGCT 60.107 50.000 0.00 0.00 42.06 5.07
2086 2095 0.030235 GTCCCTGGAAACAAACACGC 59.970 55.000 0.00 0.00 42.06 5.34
2087 2096 1.675552 AGTCCCTGGAAACAAACACG 58.324 50.000 0.00 0.00 42.06 4.49
2088 2097 5.508994 CCAATAAGTCCCTGGAAACAAACAC 60.509 44.000 0.00 0.00 42.06 3.32
2089 2098 4.586841 CCAATAAGTCCCTGGAAACAAACA 59.413 41.667 0.00 0.00 42.06 2.83
2090 2099 4.560716 GCCAATAAGTCCCTGGAAACAAAC 60.561 45.833 0.00 0.00 42.06 2.93
2091 2100 3.576550 GCCAATAAGTCCCTGGAAACAAA 59.423 43.478 0.00 0.00 42.06 2.83
2092 2101 3.161866 GCCAATAAGTCCCTGGAAACAA 58.838 45.455 0.00 0.00 42.06 2.83
2093 2102 2.378547 AGCCAATAAGTCCCTGGAAACA 59.621 45.455 0.00 0.00 39.59 2.83
2094 2103 3.087370 AGCCAATAAGTCCCTGGAAAC 57.913 47.619 0.00 0.00 31.38 2.78
2095 2104 3.825908 AAGCCAATAAGTCCCTGGAAA 57.174 42.857 0.00 0.00 31.38 3.13
2096 2105 3.202151 CCTAAGCCAATAAGTCCCTGGAA 59.798 47.826 0.00 0.00 31.38 3.53
2097 2106 2.777692 CCTAAGCCAATAAGTCCCTGGA 59.222 50.000 0.00 0.00 31.38 3.86
2098 2107 2.158608 CCCTAAGCCAATAAGTCCCTGG 60.159 54.545 0.00 0.00 0.00 4.45
2099 2108 2.777692 TCCCTAAGCCAATAAGTCCCTG 59.222 50.000 0.00 0.00 0.00 4.45
2100 2109 2.778270 GTCCCTAAGCCAATAAGTCCCT 59.222 50.000 0.00 0.00 0.00 4.20
2101 2110 2.778270 AGTCCCTAAGCCAATAAGTCCC 59.222 50.000 0.00 0.00 0.00 4.46
2102 2111 4.505324 AAGTCCCTAAGCCAATAAGTCC 57.495 45.455 0.00 0.00 0.00 3.85
2103 2112 7.933215 TTTTAAGTCCCTAAGCCAATAAGTC 57.067 36.000 0.00 0.00 0.00 3.01
2127 2136 9.682465 GGTTTAGATGGGAGTTATAGAAACTTT 57.318 33.333 0.00 0.00 0.00 2.66
2128 2137 8.832735 TGGTTTAGATGGGAGTTATAGAAACTT 58.167 33.333 0.00 0.00 0.00 2.66
2129 2138 8.388656 TGGTTTAGATGGGAGTTATAGAAACT 57.611 34.615 0.00 0.00 0.00 2.66
2130 2139 9.457436 TTTGGTTTAGATGGGAGTTATAGAAAC 57.543 33.333 0.00 0.00 0.00 2.78
2131 2140 9.457436 GTTTGGTTTAGATGGGAGTTATAGAAA 57.543 33.333 0.00 0.00 0.00 2.52
2132 2141 8.607713 TGTTTGGTTTAGATGGGAGTTATAGAA 58.392 33.333 0.00 0.00 0.00 2.10
2133 2142 8.153221 TGTTTGGTTTAGATGGGAGTTATAGA 57.847 34.615 0.00 0.00 0.00 1.98
2134 2143 7.499232 CCTGTTTGGTTTAGATGGGAGTTATAG 59.501 40.741 0.00 0.00 0.00 1.31
2135 2144 7.183112 TCCTGTTTGGTTTAGATGGGAGTTATA 59.817 37.037 0.00 0.00 37.07 0.98
2136 2145 6.011981 TCCTGTTTGGTTTAGATGGGAGTTAT 60.012 38.462 0.00 0.00 37.07 1.89
2137 2146 5.311121 TCCTGTTTGGTTTAGATGGGAGTTA 59.689 40.000 0.00 0.00 37.07 2.24
2138 2147 4.105697 TCCTGTTTGGTTTAGATGGGAGTT 59.894 41.667 0.00 0.00 37.07 3.01
2139 2148 3.655777 TCCTGTTTGGTTTAGATGGGAGT 59.344 43.478 0.00 0.00 37.07 3.85
2140 2149 4.265073 CTCCTGTTTGGTTTAGATGGGAG 58.735 47.826 0.00 0.00 37.07 4.30
2141 2150 3.010138 CCTCCTGTTTGGTTTAGATGGGA 59.990 47.826 0.00 0.00 37.07 4.37
2142 2151 3.356290 CCTCCTGTTTGGTTTAGATGGG 58.644 50.000 0.00 0.00 37.07 4.00
2143 2152 3.010138 TCCCTCCTGTTTGGTTTAGATGG 59.990 47.826 0.00 0.00 37.07 3.51
2144 2153 4.010349 GTCCCTCCTGTTTGGTTTAGATG 58.990 47.826 0.00 0.00 37.07 2.90
2145 2154 3.916989 AGTCCCTCCTGTTTGGTTTAGAT 59.083 43.478 0.00 0.00 37.07 1.98
2146 2155 3.323775 AGTCCCTCCTGTTTGGTTTAGA 58.676 45.455 0.00 0.00 37.07 2.10
2147 2156 3.790089 AGTCCCTCCTGTTTGGTTTAG 57.210 47.619 0.00 0.00 37.07 1.85
2148 2157 5.853572 ATAAGTCCCTCCTGTTTGGTTTA 57.146 39.130 0.00 0.00 37.07 2.01
2149 2158 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
2150 2159 4.227527 CCTATAAGTCCCTCCTGTTTGGTT 59.772 45.833 0.00 0.00 37.07 3.67
2151 2160 3.780850 CCTATAAGTCCCTCCTGTTTGGT 59.219 47.826 0.00 0.00 37.07 3.67
2152 2161 3.136626 CCCTATAAGTCCCTCCTGTTTGG 59.863 52.174 0.00 0.00 37.10 3.28
2153 2162 4.037927 TCCCTATAAGTCCCTCCTGTTTG 58.962 47.826 0.00 0.00 0.00 2.93
2154 2163 4.038633 GTCCCTATAAGTCCCTCCTGTTT 58.961 47.826 0.00 0.00 0.00 2.83
2155 2164 3.275228 AGTCCCTATAAGTCCCTCCTGTT 59.725 47.826 0.00 0.00 0.00 3.16
2156 2165 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
2157 2166 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
2158 2167 5.763239 TTAAGTCCCTATAAGTCCCTCCT 57.237 43.478 0.00 0.00 0.00 3.69
2159 2168 5.904169 ACTTTAAGTCCCTATAAGTCCCTCC 59.096 44.000 0.00 0.00 0.00 4.30
2160 2169 6.183360 CCACTTTAAGTCCCTATAAGTCCCTC 60.183 46.154 0.00 0.00 0.00 4.30
2161 2170 5.666265 CCACTTTAAGTCCCTATAAGTCCCT 59.334 44.000 0.00 0.00 0.00 4.20
2162 2171 5.163227 CCCACTTTAAGTCCCTATAAGTCCC 60.163 48.000 0.00 0.00 0.00 4.46
2163 2172 5.686913 GCCCACTTTAAGTCCCTATAAGTCC 60.687 48.000 0.00 0.00 0.00 3.85
2164 2173 5.104652 TGCCCACTTTAAGTCCCTATAAGTC 60.105 44.000 0.00 0.00 0.00 3.01
2165 2174 4.786454 TGCCCACTTTAAGTCCCTATAAGT 59.214 41.667 0.00 0.00 0.00 2.24
2166 2175 5.367945 TGCCCACTTTAAGTCCCTATAAG 57.632 43.478 0.00 0.00 0.00 1.73
2167 2176 5.987019 ATGCCCACTTTAAGTCCCTATAA 57.013 39.130 0.00 0.00 0.00 0.98
2168 2177 5.987019 AATGCCCACTTTAAGTCCCTATA 57.013 39.130 0.00 0.00 0.00 1.31
2169 2178 4.881157 AATGCCCACTTTAAGTCCCTAT 57.119 40.909 0.00 0.00 0.00 2.57
2170 2179 4.340617 CAAATGCCCACTTTAAGTCCCTA 58.659 43.478 0.00 0.00 0.00 3.53
2171 2180 3.165071 CAAATGCCCACTTTAAGTCCCT 58.835 45.455 0.00 0.00 0.00 4.20
2172 2181 2.233676 CCAAATGCCCACTTTAAGTCCC 59.766 50.000 0.00 0.00 0.00 4.46
2173 2182 2.233676 CCCAAATGCCCACTTTAAGTCC 59.766 50.000 0.00 0.00 0.00 3.85
2174 2183 3.056821 GTCCCAAATGCCCACTTTAAGTC 60.057 47.826 0.00 0.00 0.00 3.01
2175 2184 2.897326 GTCCCAAATGCCCACTTTAAGT 59.103 45.455 0.00 0.00 0.00 2.24
2176 2185 3.165071 AGTCCCAAATGCCCACTTTAAG 58.835 45.455 0.00 0.00 0.00 1.85
2177 2186 3.252554 AGTCCCAAATGCCCACTTTAA 57.747 42.857 0.00 0.00 0.00 1.52
2178 2187 2.990740 AGTCCCAAATGCCCACTTTA 57.009 45.000 0.00 0.00 0.00 1.85
2179 2188 2.101640 AAGTCCCAAATGCCCACTTT 57.898 45.000 0.00 0.00 0.00 2.66
2180 2189 2.990740 TAAGTCCCAAATGCCCACTT 57.009 45.000 0.00 0.00 0.00 3.16
2181 2190 2.311542 TCATAAGTCCCAAATGCCCACT 59.688 45.455 0.00 0.00 0.00 4.00
2182 2191 2.733956 TCATAAGTCCCAAATGCCCAC 58.266 47.619 0.00 0.00 0.00 4.61
2183 2192 3.464720 TTCATAAGTCCCAAATGCCCA 57.535 42.857 0.00 0.00 0.00 5.36
2184 2193 6.323739 TCTTATTTCATAAGTCCCAAATGCCC 59.676 38.462 3.93 0.00 42.21 5.36
2185 2194 7.068716 AGTCTTATTTCATAAGTCCCAAATGCC 59.931 37.037 3.93 0.00 42.21 4.40
2186 2195 8.000780 AGTCTTATTTCATAAGTCCCAAATGC 57.999 34.615 3.93 0.00 42.21 3.56
2187 2196 9.401058 AGAGTCTTATTTCATAAGTCCCAAATG 57.599 33.333 3.93 0.00 42.21 2.32
2188 2197 9.620259 GAGAGTCTTATTTCATAAGTCCCAAAT 57.380 33.333 0.00 0.00 42.21 2.32
2189 2198 8.602424 TGAGAGTCTTATTTCATAAGTCCCAAA 58.398 33.333 0.00 0.00 42.21 3.28
2190 2199 8.146053 TGAGAGTCTTATTTCATAAGTCCCAA 57.854 34.615 0.00 0.00 42.21 4.12
2191 2200 7.733773 TGAGAGTCTTATTTCATAAGTCCCA 57.266 36.000 0.00 0.00 42.21 4.37
2192 2201 7.713073 CCTTGAGAGTCTTATTTCATAAGTCCC 59.287 40.741 0.00 0.00 42.21 4.46
2193 2202 8.478877 TCCTTGAGAGTCTTATTTCATAAGTCC 58.521 37.037 0.00 0.00 42.21 3.85
2194 2203 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
2195 2204 8.482128 CCTCCTTGAGAGTCTTATTTCATAAGT 58.518 37.037 0.00 0.00 41.47 2.24
2196 2205 7.930865 CCCTCCTTGAGAGTCTTATTTCATAAG 59.069 40.741 0.00 0.00 41.47 1.73
2197 2206 7.623677 TCCCTCCTTGAGAGTCTTATTTCATAA 59.376 37.037 0.00 0.00 41.47 1.90
2198 2207 7.070074 GTCCCTCCTTGAGAGTCTTATTTCATA 59.930 40.741 0.00 0.00 41.47 2.15
2199 2208 5.966935 TCCCTCCTTGAGAGTCTTATTTCAT 59.033 40.000 0.00 0.00 41.47 2.57
2200 2209 5.187967 GTCCCTCCTTGAGAGTCTTATTTCA 59.812 44.000 0.00 0.00 41.47 2.69
2201 2210 5.423931 AGTCCCTCCTTGAGAGTCTTATTTC 59.576 44.000 0.00 0.00 41.47 2.17
2202 2211 5.346270 AGTCCCTCCTTGAGAGTCTTATTT 58.654 41.667 0.00 0.00 41.47 1.40
2203 2212 4.954089 AGTCCCTCCTTGAGAGTCTTATT 58.046 43.478 0.00 0.00 41.47 1.40
2204 2213 4.618378 AGTCCCTCCTTGAGAGTCTTAT 57.382 45.455 0.00 0.00 41.47 1.73
2205 2214 4.405756 AAGTCCCTCCTTGAGAGTCTTA 57.594 45.455 0.00 0.00 41.47 2.10
2206 2215 3.268034 AAGTCCCTCCTTGAGAGTCTT 57.732 47.619 0.00 0.00 41.47 3.01
2207 2216 4.618378 ATAAGTCCCTCCTTGAGAGTCT 57.382 45.455 0.00 0.00 41.47 3.24
2208 2217 5.697067 TCTATAAGTCCCTCCTTGAGAGTC 58.303 45.833 0.00 0.00 41.47 3.36
2209 2218 5.433712 TCTCTATAAGTCCCTCCTTGAGAGT 59.566 44.000 0.00 0.00 41.47 3.24
2210 2219 5.768164 GTCTCTATAAGTCCCTCCTTGAGAG 59.232 48.000 0.00 0.00 42.83 3.20
2211 2220 5.433712 AGTCTCTATAAGTCCCTCCTTGAGA 59.566 44.000 0.00 0.00 0.00 3.27
2212 2221 5.701224 AGTCTCTATAAGTCCCTCCTTGAG 58.299 45.833 0.00 0.00 0.00 3.02
2213 2222 5.735733 AGTCTCTATAAGTCCCTCCTTGA 57.264 43.478 0.00 0.00 0.00 3.02
2214 2223 9.589461 TTATAAGTCTCTATAAGTCCCTCCTTG 57.411 37.037 0.00 0.00 0.00 3.61
2251 2260 7.253905 TGGGACTTATAAGCCCATATAAGAC 57.746 40.000 29.15 15.83 43.73 3.01
2252 2261 6.443849 CCTGGGACTTATAAGCCCATATAAGA 59.556 42.308 31.13 16.83 45.13 2.10
2253 2262 6.443849 TCCTGGGACTTATAAGCCCATATAAG 59.556 42.308 31.13 23.33 45.13 1.73
2254 2263 6.335934 TCCTGGGACTTATAAGCCCATATAA 58.664 40.000 31.13 20.42 45.13 0.98
2255 2264 5.922715 TCCTGGGACTTATAAGCCCATATA 58.077 41.667 31.13 22.01 45.13 0.86
2256 2265 4.774779 TCCTGGGACTTATAAGCCCATAT 58.225 43.478 31.13 8.85 45.13 1.78
2257 2266 4.222333 TCCTGGGACTTATAAGCCCATA 57.778 45.455 31.13 23.83 45.13 2.74
2258 2267 3.074857 TCCTGGGACTTATAAGCCCAT 57.925 47.619 31.13 9.77 45.13 4.00
2259 2268 2.508300 GTTCCTGGGACTTATAAGCCCA 59.492 50.000 29.98 29.98 44.54 5.36
2260 2269 2.158652 GGTTCCTGGGACTTATAAGCCC 60.159 54.545 26.04 26.04 40.55 5.19
2261 2270 2.508300 TGGTTCCTGGGACTTATAAGCC 59.492 50.000 12.54 13.53 0.00 4.35
2262 2271 3.926058 TGGTTCCTGGGACTTATAAGC 57.074 47.619 12.54 5.50 0.00 3.09
2263 2272 5.566469 TGTTTGGTTCCTGGGACTTATAAG 58.434 41.667 11.05 11.05 0.00 1.73
2264 2273 5.515886 CCTGTTTGGTTCCTGGGACTTATAA 60.516 44.000 4.84 0.00 0.00 0.98
2265 2274 4.018779 CCTGTTTGGTTCCTGGGACTTATA 60.019 45.833 4.84 0.00 0.00 0.98
2266 2275 3.245264 CCTGTTTGGTTCCTGGGACTTAT 60.245 47.826 4.84 0.00 0.00 1.73
2267 2276 2.107552 CCTGTTTGGTTCCTGGGACTTA 59.892 50.000 4.84 0.00 0.00 2.24
2268 2277 1.133482 CCTGTTTGGTTCCTGGGACTT 60.133 52.381 4.84 0.00 0.00 3.01
2269 2278 0.478507 CCTGTTTGGTTCCTGGGACT 59.521 55.000 4.84 0.00 0.00 3.85
2270 2279 3.036431 CCTGTTTGGTTCCTGGGAC 57.964 57.895 0.00 0.00 0.00 4.46
2280 2289 4.765339 CCTAAAAAGTCCCTACCTGTTTGG 59.235 45.833 0.00 0.00 42.93 3.28
2281 2290 4.765339 CCCTAAAAAGTCCCTACCTGTTTG 59.235 45.833 0.00 0.00 0.00 2.93
2282 2291 4.666431 TCCCTAAAAAGTCCCTACCTGTTT 59.334 41.667 0.00 0.00 0.00 2.83
2283 2292 4.042560 GTCCCTAAAAAGTCCCTACCTGTT 59.957 45.833 0.00 0.00 0.00 3.16
2284 2293 3.586174 GTCCCTAAAAAGTCCCTACCTGT 59.414 47.826 0.00 0.00 0.00 4.00
2285 2294 3.844804 AGTCCCTAAAAAGTCCCTACCTG 59.155 47.826 0.00 0.00 0.00 4.00
2286 2295 4.157668 AGTCCCTAAAAAGTCCCTACCT 57.842 45.455 0.00 0.00 0.00 3.08
2287 2296 4.567116 CCAAGTCCCTAAAAAGTCCCTACC 60.567 50.000 0.00 0.00 0.00 3.18
2288 2297 4.567116 CCCAAGTCCCTAAAAAGTCCCTAC 60.567 50.000 0.00 0.00 0.00 3.18
2289 2298 3.590182 CCCAAGTCCCTAAAAAGTCCCTA 59.410 47.826 0.00 0.00 0.00 3.53
2290 2299 2.378886 CCCAAGTCCCTAAAAAGTCCCT 59.621 50.000 0.00 0.00 0.00 4.20
2291 2300 2.377531 TCCCAAGTCCCTAAAAAGTCCC 59.622 50.000 0.00 0.00 0.00 4.46
2292 2301 3.074094 AGTCCCAAGTCCCTAAAAAGTCC 59.926 47.826 0.00 0.00 0.00 3.85
2293 2302 4.368565 AGTCCCAAGTCCCTAAAAAGTC 57.631 45.455 0.00 0.00 0.00 3.01
2294 2303 4.808767 AAGTCCCAAGTCCCTAAAAAGT 57.191 40.909 0.00 0.00 0.00 2.66
2295 2304 8.107729 ACTTATAAGTCCCAAGTCCCTAAAAAG 58.892 37.037 12.50 0.00 32.86 2.27
2296 2305 7.992295 ACTTATAAGTCCCAAGTCCCTAAAAA 58.008 34.615 12.50 0.00 32.86 1.94
2297 2306 7.578458 ACTTATAAGTCCCAAGTCCCTAAAA 57.422 36.000 12.50 0.00 32.86 1.52
2298 2307 7.399634 CAACTTATAAGTCCCAAGTCCCTAAA 58.600 38.462 18.28 0.00 38.57 1.85
2299 2308 6.069847 CCAACTTATAAGTCCCAAGTCCCTAA 60.070 42.308 18.28 0.00 38.57 2.69
2300 2309 5.427481 CCAACTTATAAGTCCCAAGTCCCTA 59.573 44.000 18.28 0.00 38.57 3.53
2301 2310 4.227527 CCAACTTATAAGTCCCAAGTCCCT 59.772 45.833 18.28 0.00 38.57 4.20
2302 2311 4.524053 CCAACTTATAAGTCCCAAGTCCC 58.476 47.826 18.28 0.00 38.57 4.46
2303 2312 4.226620 TCCCAACTTATAAGTCCCAAGTCC 59.773 45.833 18.28 0.00 38.57 3.85
2304 2313 5.045797 AGTCCCAACTTATAAGTCCCAAGTC 60.046 44.000 18.28 6.78 38.57 3.01
2305 2314 4.850386 AGTCCCAACTTATAAGTCCCAAGT 59.150 41.667 18.28 5.74 38.57 3.16
2306 2315 5.437191 AGTCCCAACTTATAAGTCCCAAG 57.563 43.478 18.28 6.66 38.57 3.61
2307 2316 6.956102 TTAGTCCCAACTTATAAGTCCCAA 57.044 37.500 18.28 3.05 38.57 4.12
2308 2317 6.956102 TTTAGTCCCAACTTATAAGTCCCA 57.044 37.500 18.28 1.06 38.57 4.37
2336 2345 4.868734 CGTTTGGTTCATAAGTCCTAGGAC 59.131 45.833 31.29 31.29 44.86 3.85
2337 2346 4.081309 CCGTTTGGTTCATAAGTCCTAGGA 60.081 45.833 7.62 7.62 0.00 2.94
2338 2347 4.189231 CCGTTTGGTTCATAAGTCCTAGG 58.811 47.826 0.82 0.82 0.00 3.02
2339 2348 4.189231 CCCGTTTGGTTCATAAGTCCTAG 58.811 47.826 0.00 0.00 0.00 3.02
2340 2349 3.054948 CCCCGTTTGGTTCATAAGTCCTA 60.055 47.826 0.00 0.00 0.00 2.94
2341 2350 2.290705 CCCCGTTTGGTTCATAAGTCCT 60.291 50.000 0.00 0.00 0.00 3.85
2342 2351 2.089201 CCCCGTTTGGTTCATAAGTCC 58.911 52.381 0.00 0.00 0.00 3.85
2343 2352 1.471287 GCCCCGTTTGGTTCATAAGTC 59.529 52.381 0.00 0.00 0.00 3.01
2344 2353 1.541379 GCCCCGTTTGGTTCATAAGT 58.459 50.000 0.00 0.00 0.00 2.24
2345 2354 0.815095 GGCCCCGTTTGGTTCATAAG 59.185 55.000 0.00 0.00 0.00 1.73
2346 2355 0.406361 AGGCCCCGTTTGGTTCATAA 59.594 50.000 0.00 0.00 0.00 1.90
2347 2356 0.322997 CAGGCCCCGTTTGGTTCATA 60.323 55.000 0.00 0.00 0.00 2.15
2348 2357 1.606313 CAGGCCCCGTTTGGTTCAT 60.606 57.895 0.00 0.00 0.00 2.57
2349 2358 2.203422 CAGGCCCCGTTTGGTTCA 60.203 61.111 0.00 0.00 0.00 3.18
2350 2359 2.114411 TCAGGCCCCGTTTGGTTC 59.886 61.111 0.00 0.00 0.00 3.62
2351 2360 2.203437 GTCAGGCCCCGTTTGGTT 60.203 61.111 0.00 0.00 0.00 3.67
2352 2361 2.763645 AAGTCAGGCCCCGTTTGGT 61.764 57.895 0.00 0.00 0.00 3.67
2353 2362 2.115266 AAGTCAGGCCCCGTTTGG 59.885 61.111 0.00 0.00 0.00 3.28
2354 2363 0.250553 TACAAGTCAGGCCCCGTTTG 60.251 55.000 0.00 2.32 0.00 2.93
2355 2364 0.475044 TTACAAGTCAGGCCCCGTTT 59.525 50.000 0.00 0.00 0.00 3.60
2356 2365 0.696501 ATTACAAGTCAGGCCCCGTT 59.303 50.000 0.00 0.00 0.00 4.44
2357 2366 1.485066 CTATTACAAGTCAGGCCCCGT 59.515 52.381 0.00 0.00 0.00 5.28
2358 2367 1.760613 TCTATTACAAGTCAGGCCCCG 59.239 52.381 0.00 0.00 0.00 5.73
2359 2368 3.039011 TCTCTATTACAAGTCAGGCCCC 58.961 50.000 0.00 0.00 0.00 5.80
2360 2369 4.755266 TTCTCTATTACAAGTCAGGCCC 57.245 45.455 0.00 0.00 0.00 5.80
2361 2370 6.599638 ACAATTTCTCTATTACAAGTCAGGCC 59.400 38.462 0.00 0.00 0.00 5.19
2362 2371 7.550906 AGACAATTTCTCTATTACAAGTCAGGC 59.449 37.037 0.00 0.00 0.00 4.85
2363 2372 9.442047 AAGACAATTTCTCTATTACAAGTCAGG 57.558 33.333 0.00 0.00 31.02 3.86
2414 2423 3.226777 TCAGCCGGGATTTCTTCAAAAA 58.773 40.909 2.18 0.00 0.00 1.94
2415 2424 2.819608 CTCAGCCGGGATTTCTTCAAAA 59.180 45.455 2.18 0.00 0.00 2.44
2416 2425 2.436417 CTCAGCCGGGATTTCTTCAAA 58.564 47.619 2.18 0.00 0.00 2.69
2417 2426 1.340017 CCTCAGCCGGGATTTCTTCAA 60.340 52.381 2.18 0.00 0.00 2.69
2418 2427 0.253044 CCTCAGCCGGGATTTCTTCA 59.747 55.000 2.18 0.00 0.00 3.02
2419 2428 1.098129 GCCTCAGCCGGGATTTCTTC 61.098 60.000 2.18 0.00 0.00 2.87
2420 2429 1.077429 GCCTCAGCCGGGATTTCTT 60.077 57.895 2.18 0.00 0.00 2.52
2421 2430 2.592308 GCCTCAGCCGGGATTTCT 59.408 61.111 2.18 0.00 0.00 2.52
2431 2440 0.749454 CCAACATGGTAGGCCTCAGC 60.749 60.000 9.68 6.50 35.27 4.26
2432 2441 3.483954 CCAACATGGTAGGCCTCAG 57.516 57.895 9.68 0.00 35.27 3.35
2448 2457 2.829384 GCCCCAGAGTGGTCAACCA 61.829 63.158 0.00 0.00 45.30 3.67
2449 2458 2.034221 GCCCCAGAGTGGTCAACC 59.966 66.667 0.00 0.00 35.17 3.77
2450 2459 1.302832 CAGCCCCAGAGTGGTCAAC 60.303 63.158 0.00 0.00 35.17 3.18
2451 2460 2.528818 CCAGCCCCAGAGTGGTCAA 61.529 63.158 0.00 0.00 35.17 3.18
2452 2461 2.930019 CCAGCCCCAGAGTGGTCA 60.930 66.667 0.00 0.00 35.17 4.02
2453 2462 4.416738 GCCAGCCCCAGAGTGGTC 62.417 72.222 0.00 0.00 35.17 4.02
2455 2464 4.729918 GTGCCAGCCCCAGAGTGG 62.730 72.222 0.00 0.00 37.25 4.00
2456 2465 3.644606 AGTGCCAGCCCCAGAGTG 61.645 66.667 0.00 0.00 0.00 3.51
2457 2466 3.644606 CAGTGCCAGCCCCAGAGT 61.645 66.667 0.00 0.00 0.00 3.24
2458 2467 3.324930 TCAGTGCCAGCCCCAGAG 61.325 66.667 0.00 0.00 0.00 3.35
2459 2468 3.640407 GTCAGTGCCAGCCCCAGA 61.640 66.667 0.00 0.00 0.00 3.86
2460 2469 4.729918 GGTCAGTGCCAGCCCCAG 62.730 72.222 0.00 0.00 0.00 4.45
2463 2472 2.210144 TATTGGGTCAGTGCCAGCCC 62.210 60.000 6.03 5.67 41.42 5.19
2464 2473 0.749454 CTATTGGGTCAGTGCCAGCC 60.749 60.000 6.03 0.11 0.00 4.85
2465 2474 0.749454 CCTATTGGGTCAGTGCCAGC 60.749 60.000 6.03 0.00 0.00 4.85
2466 2475 3.483954 CCTATTGGGTCAGTGCCAG 57.516 57.895 6.03 0.00 0.00 4.85
2477 2486 2.450886 AGGCCCCTTTAATCCCTATTGG 59.549 50.000 0.00 0.00 0.00 3.16
2478 2487 3.767711 GAGGCCCCTTTAATCCCTATTG 58.232 50.000 0.00 0.00 0.00 1.90
2479 2488 2.375509 CGAGGCCCCTTTAATCCCTATT 59.624 50.000 0.00 0.00 0.00 1.73
2480 2489 1.985895 CGAGGCCCCTTTAATCCCTAT 59.014 52.381 0.00 0.00 0.00 2.57
2481 2490 1.344701 ACGAGGCCCCTTTAATCCCTA 60.345 52.381 0.00 0.00 0.00 3.53
2482 2491 0.623617 ACGAGGCCCCTTTAATCCCT 60.624 55.000 0.00 0.00 0.00 4.20
2483 2492 0.179026 GACGAGGCCCCTTTAATCCC 60.179 60.000 0.00 0.00 0.00 3.85
2484 2493 0.837940 AGACGAGGCCCCTTTAATCC 59.162 55.000 0.00 0.00 0.00 3.01
2485 2494 2.289565 CAAGACGAGGCCCCTTTAATC 58.710 52.381 0.00 0.00 0.00 1.75
2486 2495 1.682087 GCAAGACGAGGCCCCTTTAAT 60.682 52.381 0.00 0.00 0.00 1.40
2487 2496 0.322187 GCAAGACGAGGCCCCTTTAA 60.322 55.000 0.00 0.00 0.00 1.52
2488 2497 1.298667 GCAAGACGAGGCCCCTTTA 59.701 57.895 0.00 0.00 0.00 1.85
2489 2498 2.034221 GCAAGACGAGGCCCCTTT 59.966 61.111 0.00 0.00 0.00 3.11
2499 2508 0.447801 CTCCAAATTCCCGCAAGACG 59.552 55.000 0.00 0.00 43.15 4.18
2500 2509 1.534729 ACTCCAAATTCCCGCAAGAC 58.465 50.000 0.00 0.00 43.02 3.01
2501 2510 2.286365 AACTCCAAATTCCCGCAAGA 57.714 45.000 0.00 0.00 43.02 3.02
2502 2511 2.295909 TGAAACTCCAAATTCCCGCAAG 59.704 45.455 0.00 0.00 0.00 4.01
2503 2512 2.035321 GTGAAACTCCAAATTCCCGCAA 59.965 45.455 0.00 0.00 0.00 4.85
2504 2513 1.611491 GTGAAACTCCAAATTCCCGCA 59.389 47.619 0.00 0.00 0.00 5.69
2505 2514 1.611491 TGTGAAACTCCAAATTCCCGC 59.389 47.619 0.00 0.00 38.04 6.13
2506 2515 4.519540 AATGTGAAACTCCAAATTCCCG 57.480 40.909 0.00 0.00 38.04 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.