>input_sequence_77164
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------------------------------------------------ATGTCGATATCCTCGAGCTCCAACAAGACGCT
GCCCTACTCGGCGGACGGTGGCAGCTACAGCACCCACGACACGCTCGCCCTCCTCGTCATCGGCTTCAGCGTCACCGCCG
TCTGCGTCTTCATAATCGCGCTATTCGATTGCCTGTGCTGCCGCCCGCGCCGCGCTGGCGGCCGCAGGATCGTCTTCGTG
GGCGCCCGGCCGTTCTTGGTGCGTGCCGGCGGCGATGGTGGGCTGAGCCCCACGGCCGTGGCCGCGCTGCCGTCGTTCTT
GTACCACAGAGGCGTGGCCGTCCGCGGCAACGACGGTTCGGACGGTCGCGGCGAAGGCAGCGGCGGTGGCCGCGGGTGGG
CGCAGTGCGCGGTGTGCCTCAGTCTGGTGAAGGAAGGGGAGGTGGTGAGGCAGCTGCCGGCGTGCATGCACCTGTTCCAT
GTAGGCTGCGTCGACACCTGGTTGCATTCCCACTCCACTTGCCCTCTGTGCAGGGCCACGGTGGAGCCCCCTTCGAAAGA
CCAGGTGCCTCCTGTGTGA-------------------------------------------------------------
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>chr2B_1_TraesCS2B01G182100
GAAAAC--AAAAAGAAGAAAAGGAATACAATGCTCCATGAAGCCGACTACTCGCGGCGAAGAGGCTAAGAAAGTGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCTGCTGCCCATGTGACAAATTTAATATGCCT
AACGATTAATAAGGCCCTCTA-TTTCCTGCAAAAAATGTATTCCCTCTGGGCATGTTATCAGAAAAAGAAAACAATGGAA
AAACACTCCAGGATATATCCATAACTGCTACCTATTCCATTGACCTACTACACAAATGAACAATGATTGATTAACTTAAC
TAACCAGAGTTGCCAAATGTCATCATTTGGTTATGTCAGCGGCAAATGTCACCA-TTGGTTATGTCAGTGGTTGAGAAAC
CTAGCAAGTTGTAATTGTTAACCTACGAGACGACTGTCTACCAGGATGAAAGGGCCATCCGAACAATTGCCATATATGGT
CTGGATAAGAACAATGGCCATAAATAATGGAAAGCATGACATGAACTTAGATCACGAATGATTTTGATCTATTTGTATAT
TCCAGTGTACCGTGTTATGCATGACGCCATACAGAGATGATTACGATTGGTGACTAGTTATGTGACTAATCTAACATTAG
TTGCATAACTGCCATCCTTGAAACGCTCAAAAAACTCGGAATATATTTTA-TTCTAGCGTTGCATATATACTATCGGCCA
ATTCCAGGCTCAGCCTCCAAGAATATAAGATACCAGCAATATAGCTCAAAGCAGCTTGCAGACGAGCTAAGCTACCTTA-
--TAGGTGACACGGCTAGAAACTAGCTAGAGCAGCTCGTCGACCGGCCATGTCGATATCCTCGAGCTCCAACAAGACGCT
GCCCTACTCGGCGGACGGTGGCAGCTACAGCACCCACGACACGCTCGCCCTCCTCGTCATCGGCTTCAGCGTCACCGCCG
TCTGCGTCTTCATAATCGCGCTATTCGATTGCCTGTGCTGCCGCCCGCGCCGCGCTGGCGGCCGCAGGATCGTCTTCGTG
GGCGCCCGGCCGTTCTTGGTGCGTGCCGGCGGCGATGGTGGGCTGAGCCCCACGGCCGTGGCCGCGCTGCCGTCGTTCTT
GTACCACAGAGGCGTGGCCGTCCGCGGCAACGACGGTTCGGACGGTCGCGGCGAAGGCAGCGGCGGTGGCCGCGGGTGGG
CGCAGTGCGCGGTGTGCCTCAGTCTGGTGAAGGAAGGGGAGGTGGTGAGGCAGCTGCCGGCGTGCATGCACCTGTTCCAT
GTAGGCTGCGTCGACACCTGGTTGCATTCCCACTCCACTTGCCCTCTGTGCAGGGCCACGGTGGAGCCCCCTTCGAAAGA
CCAGGTGCCTCCTGTGTGATCAATGCGAGATTTGGGCAGAGGTTTATGTGCTATGTAGCATCATACAGTATATTTTTGTA
CATATCAGATGTAGAAATTACTGTACTACGAGTGCGTACCAAGAATTCTGCTCCAAACTAGTTTCATGCGTGTTCTGTTC
TCTGCCCTTTCTCCGGATGTCTTTGTTCATGCTTGAATGTGGATTGGGGAGGATCAATTGTGAATAGAAGGATGAAATGG
TTGATCCAGTCTGATTGGTCCTGACATAAAAGTCCCTTATTGCCTTATTGGTTCTTGAGATTGACTTGTAATAGAGAAAT
CATCTTCATAGTCAACATGCTTTCGTTTATTCTAATCCTTTTTTTTTTGCAAGAAATCCTGATTGAGGACCACACTATTG
GTCGATCTCACCGGGGTTGGTGTTGACCGCAAATGCTACATGCCACCCGTGGTAGCATATAAGTGGCAGATAACCCATAG
GCGGTTGGGATTGGGATTGCGGCTTAGTTGGCGGTTTTTTTCTTTTTTTTTGCAAAGATACATAAACACATTTGATTGGT
TCTTGATATTGAGAGCGTGTTTGTTTCCAGGGACTTATTGGCTTAGGGACTTAAAAAAGTTTCTATAACTCCCATCTAAA
CCAAACAGGAGGGACTTATAGGGACTTAAAGTGGGCATTTGGGACTTATGAAATAAGACTCTCAAGGAGGGACTTATAGA
GACTTATAATTGTAATATGGTCTTATATGGGCTTATAAGTCCCAGGAACCAAACAGGTAGGGACTTTTTAGGGACTTGGG
ACTTATAAGTTGGGACTAAAAAAAGTCCTAGGACTTATGAACCAAACGGGGCCTGACTTGTAATAGAGAAATTGTCTTCA
TAGTCAACGTGCTTTCTTTGGTTTTTTGAAGAAATCCCGGCTGAGGCCTACCATGTTGGTTGACCACTCTGGGGCTGGCA
CTGACCCAATAGGGATTAAAGGGGCCTCGTCTTGCGGGAATTTGGAGTTTCACATTTTT
>chr2A_1
GAAAACAAAAAAAAAAGAAAAAGAATACAAGGCTCCACGAAGCCGACTACTCGCGGCGAAGAGGCTAAGAAAGTGGCGCG
CTTGCTTCCG----------------------------------------------------------------------
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----------------------------------------------GTCCCGCTGCTCATGTGACAACTGCAATATGCCT
AATGCTTGATAA-GCCCTCTATTTTCCTGCAAAAAATGAATTCCCTCTGGGCATGTTGTCAGAAAAAGAAAACAACGGAA
AAACACTCCAGGATATATCCATAACTGCTACCTATTCCATTGACCTACTGCACAAATGAA--------GATTAACTAAAC
TAACCAGAGTTGCCAAATGTCATCATTTGGTTATGTCAGCGGCAAATGTCACCATTTGGTTATGTCAGTGGTTGAGAAAC
CTAGCTAGTTGTAATTGTTAACCTACGAGACGACTGTCTAACAGGATGAAAGGGCCATCCGAACAATTGCCATATATGGT
TTGGATAAGAACAATGGCCATAAACAATGGAAAGCATGACATGAACCTAGATCACGAACGATTTTGATCTATTTGGATAT
TCCAGTGTACCGTGTTATGCATGACGCCATACAGAGATGATTACGATTGGCGACTAGTTATGTGACTAATCTAAAATTAG
TTGCATAACTGCCGTCCTTGAAACGCTCAAAAAACTCGGAATATATTTTACTTCTAGCGTTGCGTATATACTAGCGACCA
ATTCCCTGCTCAGCCTCCAAAAATATAAGATACCAGCAATATAGCTCAA---AGCTTGCAGACGAGCTAAGCTACCTTAT
AGTAGGTGACACGGCTAGAAACTAGCTAGAGCAGTTCGTCGACCGGCCATGTCGATATCCTCTAGCTCCAACAAGACGCT
GCCCTACTCGGCGGACGGTGGCAGCTACAGCACCCACGACACGCTCGCCCTCCTCGTCATCGGCTTCAGCGTCACCGCCG
TCTGCGTCTTCATAATCGCGCTGTTCGATTGCCTGTGCTGCCGCCCGCGCCGCGCCGGCGGCCGCAGGATCGTCTTCGTG
GGCGCCCGGCCGTTCTTGGTGCGTGCCGGCGGCGACGGTGGGCTGAGCCCCACGGCCGTGGCCGGGCTGCCGTCGTTCTT
GTACCACAGAGGCTTGGCCGTCCGCGGCAACGGCGATTCGGACGGTCGTGGCGAAGGCAGCGGCGGTGGCCGCGGGTGGG
CGCAGTGCGCGGTGTGCCTCAGTCTGGTGAAGGAAGGGGAGGTGGTGAGGCAGCTGCCGGCGTGCATGCACCTGTTCCAT
GTAGGCTGCGTCGACACCTGGTTGCACTCCCACTCCACTTGCCCTCTGTGCAGGGCCACGGTAGAGCCCCCTTCGAAAGA
CCAGGTGCCTCCTGTGTGATTACTGCGAGATTTGCACAGAGTTTTCTGTGCTATGTAGCATG--------TATTTTTGTA
CACATCAGATGTAGAAATTGCTGTGCTGCGAGTGCGTACCAAGAATTCTGCACCAAACTAGTTTCACC--TGTTATGTTC
TCTACTTTTTCTCTGGATGTC---GTTCATGCTTGAATGTAGTTTGGGGA----------------------TGAAATGG
TTGATCCAGACTGATTGGCCCTGACATAAAAGTC--------CCTTATTGGTTCTTGAAATTGACTTGTAATAGAGAAAT
CATCTTCATAGTCAACGTGCTTTCGTTTATTCTAATCCTTTT--TTTTGCAAGAAATCCCGATTGAGGACAACACTATTG
GTCTATCTCACCGGGGTTGGTGTTGACCGCAAATGCTACATGCCACCCGTGGCAGCATATAAGCGGCGGATAACCCATAG
GCGATTGGGATTGGGATTGCGGCTTAGTTGGCGGTGTTTTC-----TTTTTGCGAAGATACATAAACACATTTGACTGGT
TCTTGAGAT-----------------------------------------------------------------------
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-----------------------------------------------------TGACTTGTAATAGAGAAATCGTCTTCA
TAGTCAATGTGCTTTCTTT-------------------------------------------------------------
-----------------------------------------------------------
>chr2D_309
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----------------------------------------------------------------------TAGTATGCCT
AATGATTAATAAGGCCCTCTATTTTCCTGCAAAAAATGAATTCCCTCTGGGCATGTTGTCAGAAAAAGAAAACAACGGAA
A----CTTCAGGATATATCCATAACTGCTGCCTATTCCATTGACCTACTACACAAATGAACAATGATTGATTAACTTAAC
TAATCAGAGTTGCCAAATGTCATCATTTGGTTATGTCAGTGGCAAATGTCACCATTTGGTTATGTCAGTGGTTGAGAAAC
CTAGCTAGTTGTAATTGTTAACCTACAAGACGACTGTCTAACAGGATGAAAGGGCCATCCGAACAATTGCCATATATGGT
TTGGATAAGAACAATGGCCATAAATAATGGAAAGCATGACATGAACTTAGATCACGAATGATTTTGATCTATTTGGATAT
TCCAGTGTACCGTGTTATGCATGACGCCATACAGAGATGATTACGATTGGTGACTAGTTATGTGACTAATCTAACATTAG
TTGCATAACTGCCGTCCTTGAAACGCTCAAAAAACTCGGAATATATTTGACTTCTAGCGTTGCATATATA---GCGGCCA
ATTCCAGGCTCAGCCTCCAAGAATATAACATACCAGCAATACAGCTCAA---AGCTTGCAGACGAGCTAAGCTACCTGA-
--TAGGTGACACGGCTAGAAACTAGCTAGAGCAGTTCGTCGACCGGCCATGTCGATATCCTCGAGCTCCAACAAGACGCT
GCCCTACTCGGCGGACGGTGGCAGCTACAGCACCCACGACACGCTCGCCCTCCTCGTCATCGGCTTCAGCGTCACCGCCG
TCTGTGTCTTCATAATCGCCCTATTCGATTGCCTGTGCTGCCGCCCGCGCCGCGCTGGCGGCCGCAGGATCGTCTTCGTG
GGCGCCCGGCCGTTCTTGGTGCGTGCCGGCGGCGATGGTGGGCTGAGCCCCACGGCCGTGGCCGCGCTGCCGTCGTTCTT
GTACCACAGAGGCGTGGCCGTCCGCGGCAACGACGGTCCGGACGGTCGTGGCGAAGGCAGCGGCGGCGGCCGCGGGTGGG
CGCAGTGCGCGGTGTGCCTCAGCCTGGTGAAGGAAGGGGAGGTGGTGAGGCAGCTGCCGGCGTGCATGCACCTGTTCCAT
GTAGGCTGCGTCGACACCTGGTTGCACTCCCACTCCACTTGCCCTCTGTGCAGGGCCACGGTAGAGCCCCCTTCGAAAGA
CCAGGTGCCTCCTGTGTGATCGATGCGAGATTTGTGCAGAGTTTTCTGTGCTATGTACTGTAGC-----ATATTTTTGTA
CATATCAGATGTAGAAATTACTGTACTACGAGTGCGTACCAAGAATTCTGCACCAAACTAGTTTCACC--TGTCATGTTC
TCTACCCTTTCTCTGGATGTC---GTTGATGCTTGAATGTAGATTGGGGAGGATCAATTGTGAATAGAAGGATGAAATGG
TTGATCCAGTCTGATTGGTTCTGACATAAAAATC--------TCTTATTGGTTCTTGACATTGACTTGTAATAGAGAG-T
CATCTTCATAGTCAACGCGCTTTATTTTCTTCTAATCTTTCTTTTTTGACAAGAAATCATCTCCGATGCCCATACTATTG
GTCGACATCACAAGAGTTGGTGTTGACCACGAATGCTATATGCTGCCTCTTGCAGCATATAAGTGGCGGATAACCCATGG
GCGATTGCGATTGGGATGGCGGCCTAGTAGGCGACTTTTTT-----TTGCGGGA---ATACATAAACGCATCTGATTGGT
TCTTGAGAT-----------------------------------------------------------------------
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-----------------------------------------------------TGACTTGTAATAGAGAAATTGTCTCCA
TAGTCAACGTGCTTTCTTT-------------------------------------------------------------
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>SNPs
-------------S-------S--------S------S-------------------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-----S----------S-S----------
--S-----------------------------------S------------------S-----------------S----
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-----S----------------------------------S---------------------------------------
S--------------------------------------------------------------------------S----
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-------------S-----------------------------------------------------------S------
-------------------------------------------------SSS----------------------------
----------------------------------S---------------------------------------------
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------------------------------------------------S-------------------------------
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--------------------------S-----------------------------------S-----------------
----------------------------------S------S---S---------------SSSSSSSS-----------
---------------------------------------------------S--------------SSSS----S-----
---S---------S-------SSS----------------S---------------------------------------
----------------------------------SSSSSSSS----------------S---------------------
----------------S---------------------------------------------------------------
----------------------------------------------------S--------------S------------
---S-------------------------------------SSSSS----------------------------------
------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_308
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------------------------------------------------CCTGCTGCCCATGTGACAAA------------
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>reverse_2095
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--------------GCGTGTTTGTTTCCAGGGAC----------------------------------------------
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