Multiple sequence alignment - TraesCS2B01G177900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G177900 chr2B 100.000 3513 0 0 1 3513 152845722 152842210 0.000000e+00 6488
1 TraesCS2B01G177900 chr2B 84.352 933 57 36 758 1655 153127420 153126542 0.000000e+00 832
2 TraesCS2B01G177900 chr2B 91.774 389 15 12 214 588 153127975 153127590 3.110000e-145 525
3 TraesCS2B01G177900 chr2B 88.732 284 18 7 1836 2109 153126534 153126255 5.620000e-88 335
4 TraesCS2B01G177900 chr2A 88.824 1709 91 55 1 1654 100827460 100825797 0.000000e+00 2006
5 TraesCS2B01G177900 chr2A 90.879 1502 70 15 1824 3265 100825802 100824308 0.000000e+00 1953
6 TraesCS2B01G177900 chr2A 88.528 462 37 8 1823 2272 100971267 100970810 2.380000e-151 545
7 TraesCS2B01G177900 chr2A 85.024 414 38 12 1245 1654 100971654 100971261 1.960000e-107 399
8 TraesCS2B01G177900 chr2A 90.203 296 19 7 854 1149 100971981 100971696 9.200000e-101 377
9 TraesCS2B01G177900 chr2A 94.298 228 12 1 3287 3513 767386154 767385927 7.220000e-92 348
10 TraesCS2B01G177900 chr2A 83.333 180 14 6 334 497 100972754 100972575 6.070000e-33 152
11 TraesCS2B01G177900 chr2A 98.246 57 1 0 529 585 100972572 100972516 2.230000e-17 100
12 TraesCS2B01G177900 chr2D 91.638 1471 57 22 1822 3265 101872603 101871172 0.000000e+00 1975
13 TraesCS2B01G177900 chr2D 88.485 1129 61 32 177 1266 101874045 101872947 0.000000e+00 1301
14 TraesCS2B01G177900 chr2D 90.260 462 30 7 1823 2272 101956342 101955884 1.090000e-164 590
15 TraesCS2B01G177900 chr2D 94.611 334 10 4 1329 1654 101872929 101872596 8.700000e-141 510
16 TraesCS2B01G177900 chr2D 84.450 418 48 12 1239 1654 101956738 101956336 2.540000e-106 396
17 TraesCS2B01G177900 chr2D 88.851 296 23 6 854 1149 101957059 101956774 4.310000e-94 355
18 TraesCS2B01G177900 chr7B 93.651 252 14 1 3264 3513 111324907 111324656 3.310000e-100 375
19 TraesCS2B01G177900 chr7B 93.033 244 16 1 3271 3513 97922935 97922692 4.310000e-94 355
20 TraesCS2B01G177900 chr7B 96.685 181 4 2 1644 1823 699933415 699933594 2.050000e-77 300
21 TraesCS2B01G177900 chr7B 89.865 148 14 1 1374 1520 452961926 452962073 4.630000e-44 189
22 TraesCS2B01G177900 chr7B 85.915 142 17 3 997 1136 452961691 452961831 7.860000e-32 148
23 TraesCS2B01G177900 chr7B 86.923 130 17 0 1516 1645 452962139 452962268 2.830000e-31 147
24 TraesCS2B01G177900 chr5B 96.491 228 7 1 3287 3513 64728255 64728028 3.310000e-100 375
25 TraesCS2B01G177900 chr5B 93.805 226 14 0 3288 3513 571880836 571880611 1.210000e-89 340
26 TraesCS2B01G177900 chr4B 95.595 227 10 0 3287 3513 665148936 665148710 7.170000e-97 364
27 TraesCS2B01G177900 chr7A 94.690 226 11 1 3289 3513 7830727 7830952 2.010000e-92 350
28 TraesCS2B01G177900 chr7A 90.780 141 12 1 1381 1520 486237288 486237148 1.660000e-43 187
29 TraesCS2B01G177900 chr7A 88.976 127 14 0 1519 1645 486237078 486236952 1.310000e-34 158
30 TraesCS2B01G177900 chr7A 85.211 142 18 3 997 1136 486237571 486237431 3.660000e-30 143
31 TraesCS2B01G177900 chr5A 94.298 228 12 1 3287 3513 561118161 561118388 7.220000e-92 348
32 TraesCS2B01G177900 chr5A 100.000 168 0 0 1655 1822 622194168 622194335 9.470000e-81 311
33 TraesCS2B01G177900 chr5A 97.701 174 4 0 1655 1828 476123812 476123639 2.050000e-77 300
34 TraesCS2B01G177900 chr5A 95.699 186 7 1 1646 1831 702454311 702454495 7.370000e-77 298
35 TraesCS2B01G177900 chr4A 93.805 226 13 1 3289 3513 638721558 638721783 4.340000e-89 339
36 TraesCS2B01G177900 chr1A 98.851 174 2 0 1648 1821 561526813 561526986 9.470000e-81 311
37 TraesCS2B01G177900 chr1A 84.800 125 19 0 1397 1521 66892813 66892937 3.680000e-25 126
38 TraesCS2B01G177900 chr5D 96.774 186 4 2 1647 1831 412360967 412360783 3.410000e-80 309
39 TraesCS2B01G177900 chr5D 96.703 182 4 2 1651 1831 493835499 493835319 5.700000e-78 302
40 TraesCS2B01G177900 chr7D 97.238 181 3 2 1649 1828 569602918 569602739 4.410000e-79 305
41 TraesCS2B01G177900 chr7D 89.189 148 15 1 1374 1520 436114181 436114328 2.150000e-42 183
42 TraesCS2B01G177900 chr7D 85.915 142 17 3 997 1136 436113959 436114099 7.860000e-32 148
43 TraesCS2B01G177900 chr7D 86.923 130 17 0 1516 1645 436114395 436114524 2.830000e-31 147
44 TraesCS2B01G177900 chr7D 82.031 128 19 4 1396 1521 165634967 165635092 4.800000e-19 106
45 TraesCS2B01G177900 chr1D 96.685 181 4 2 1647 1826 475111178 475110999 2.050000e-77 300
46 TraesCS2B01G177900 chr1D 84.000 125 20 0 1397 1521 68446388 68446512 1.710000e-23 121
47 TraesCS2B01G177900 chr4D 87.952 249 8 7 284 517 498413818 498413577 1.240000e-69 274
48 TraesCS2B01G177900 chr3D 91.509 106 9 0 1395 1500 352367935 352367830 2.830000e-31 147
49 TraesCS2B01G177900 chr3A 90.566 106 10 0 1395 1500 470829751 470829646 1.310000e-29 141
50 TraesCS2B01G177900 chr1B 89.247 93 10 0 1397 1489 109728747 109728839 2.220000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G177900 chr2B 152842210 152845722 3512 True 6488.0 6488 100.000000 1 3513 1 chr2B.!!$R1 3512
1 TraesCS2B01G177900 chr2B 153126255 153127975 1720 True 564.0 832 88.286000 214 2109 3 chr2B.!!$R2 1895
2 TraesCS2B01G177900 chr2A 100824308 100827460 3152 True 1979.5 2006 89.851500 1 3265 2 chr2A.!!$R2 3264
3 TraesCS2B01G177900 chr2A 100970810 100972754 1944 True 314.6 545 89.066800 334 2272 5 chr2A.!!$R3 1938
4 TraesCS2B01G177900 chr2D 101871172 101874045 2873 True 1262.0 1975 91.578000 177 3265 3 chr2D.!!$R1 3088
5 TraesCS2B01G177900 chr2D 101955884 101957059 1175 True 447.0 590 87.853667 854 2272 3 chr2D.!!$R2 1418


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 1402 0.104304 AGCTTTGGTTCACGTCGTCT 59.896 50.0 0.00 0.00 0.0 4.18 F
979 1407 0.309922 TGGTTCACGTCGTCTCAGTC 59.690 55.0 0.00 0.00 0.0 3.51 F
1813 2281 0.107214 TGGCATGTTGGGCTAGCTAC 60.107 55.0 15.72 10.98 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 2262 0.107214 GTAGCTAGCCCAACATGCCA 60.107 55.0 12.13 0.00 0.00 4.92 R
2359 2855 0.827925 AGTCGGACCACTTGAGCTCA 60.828 55.0 13.74 13.74 0.00 4.26 R
3445 3989 0.035176 GCATCTCAGCCAGAGGATCC 59.965 60.0 2.48 2.48 44.81 3.36 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 5.547465 ACTGTTGAATGACCGACAGAAATA 58.453 37.500 15.79 0.00 46.57 1.40
62 63 7.441157 TGTTGAATGACCGACAGAAATATATCC 59.559 37.037 0.00 0.00 0.00 2.59
63 64 7.061566 TGAATGACCGACAGAAATATATCCA 57.938 36.000 0.00 0.00 0.00 3.41
66 67 6.664428 TGACCGACAGAAATATATCCATCA 57.336 37.500 0.00 0.00 0.00 3.07
67 68 7.244886 TGACCGACAGAAATATATCCATCAT 57.755 36.000 0.00 0.00 0.00 2.45
68 69 7.679783 TGACCGACAGAAATATATCCATCATT 58.320 34.615 0.00 0.00 0.00 2.57
69 70 7.819415 TGACCGACAGAAATATATCCATCATTC 59.181 37.037 0.00 0.00 0.00 2.67
70 71 7.679783 ACCGACAGAAATATATCCATCATTCA 58.320 34.615 0.00 0.00 0.00 2.57
71 72 7.821359 ACCGACAGAAATATATCCATCATTCAG 59.179 37.037 0.00 0.00 0.00 3.02
72 73 7.821359 CCGACAGAAATATATCCATCATTCAGT 59.179 37.037 0.00 0.00 0.00 3.41
109 110 5.527951 TGACACTGTCAATAAATGTTTGCC 58.472 37.500 9.54 0.00 39.78 4.52
112 113 7.040132 TGACACTGTCAATAAATGTTTGCCATA 60.040 33.333 9.54 0.00 39.78 2.74
113 114 7.839907 ACACTGTCAATAAATGTTTGCCATAT 58.160 30.769 0.00 0.00 31.97 1.78
115 116 7.436080 CACTGTCAATAAATGTTTGCCATATCC 59.564 37.037 0.00 0.00 31.97 2.59
125 129 4.136796 GTTTGCCATATCCTCTACATGCA 58.863 43.478 0.00 0.00 0.00 3.96
139 143 6.095300 CCTCTACATGCATGAATAACCAAACA 59.905 38.462 32.75 2.60 0.00 2.83
170 174 7.275888 TGTTTACTTGATTGAGACATTGCTT 57.724 32.000 0.00 0.00 0.00 3.91
171 175 7.715657 TGTTTACTTGATTGAGACATTGCTTT 58.284 30.769 0.00 0.00 0.00 3.51
190 194 4.386954 GCTTTAAAGTGACACGTACCCTAC 59.613 45.833 16.38 0.00 0.00 3.18
209 213 4.641989 CCTACATTGACAGGAATTGAAGGG 59.358 45.833 3.80 0.00 33.42 3.95
210 214 2.827921 ACATTGACAGGAATTGAAGGGC 59.172 45.455 0.00 0.00 0.00 5.19
211 215 1.923356 TTGACAGGAATTGAAGGGCC 58.077 50.000 0.00 0.00 0.00 5.80
212 216 0.322456 TGACAGGAATTGAAGGGCCG 60.322 55.000 0.00 0.00 0.00 6.13
254 260 2.485479 GGTTCATATGCGTGGTGGAGAT 60.485 50.000 0.00 0.00 0.00 2.75
255 261 2.531522 TCATATGCGTGGTGGAGATG 57.468 50.000 0.00 0.00 38.80 2.90
256 262 0.870393 CATATGCGTGGTGGAGATGC 59.130 55.000 0.00 0.00 30.75 3.91
257 263 0.469494 ATATGCGTGGTGGAGATGCA 59.531 50.000 0.00 0.00 39.60 3.96
266 275 4.574421 CGTGGTGGAGATGCAAATTACATA 59.426 41.667 0.00 0.00 0.00 2.29
271 280 6.016777 GGTGGAGATGCAAATTACATAAGAGG 60.017 42.308 0.00 0.00 0.00 3.69
275 288 4.875544 TGCAAATTACATAAGAGGCGAC 57.124 40.909 0.00 0.00 0.00 5.19
276 289 4.257731 TGCAAATTACATAAGAGGCGACA 58.742 39.130 0.00 0.00 0.00 4.35
277 290 4.881273 TGCAAATTACATAAGAGGCGACAT 59.119 37.500 0.00 0.00 0.00 3.06
278 291 5.207768 GCAAATTACATAAGAGGCGACATG 58.792 41.667 0.00 0.00 0.00 3.21
279 292 5.007626 GCAAATTACATAAGAGGCGACATGA 59.992 40.000 0.00 0.00 0.00 3.07
280 293 6.422223 CAAATTACATAAGAGGCGACATGAC 58.578 40.000 0.00 0.00 0.00 3.06
281 294 4.729227 TTACATAAGAGGCGACATGACA 57.271 40.909 0.00 0.00 0.00 3.58
282 295 3.827008 ACATAAGAGGCGACATGACAT 57.173 42.857 0.00 0.00 0.00 3.06
323 338 1.067199 GCTCAATTGCTTGCGTTCCG 61.067 55.000 0.00 0.00 32.11 4.30
590 883 3.636043 GCCCACACACACACGACG 61.636 66.667 0.00 0.00 0.00 5.12
684 1062 2.718993 GATGAGAGAGTACGCCGGCG 62.719 65.000 44.88 44.88 46.03 6.46
708 1086 1.135333 GTACTGACACTGGCTAGCTCC 59.865 57.143 15.72 0.00 0.00 4.70
713 1097 2.041405 ACTGGCTAGCTCCCTCCC 60.041 66.667 15.72 0.00 0.00 4.30
966 1394 1.165907 CGCCACTGAGCTTTGGTTCA 61.166 55.000 10.66 0.00 35.09 3.18
970 1398 1.261619 CACTGAGCTTTGGTTCACGTC 59.738 52.381 0.00 0.00 0.00 4.34
971 1399 0.508641 CTGAGCTTTGGTTCACGTCG 59.491 55.000 0.00 0.00 0.00 5.12
972 1400 0.179094 TGAGCTTTGGTTCACGTCGT 60.179 50.000 0.00 0.00 0.00 4.34
973 1401 0.507358 GAGCTTTGGTTCACGTCGTC 59.493 55.000 0.00 0.00 0.00 4.20
974 1402 0.104304 AGCTTTGGTTCACGTCGTCT 59.896 50.000 0.00 0.00 0.00 4.18
975 1403 0.507358 GCTTTGGTTCACGTCGTCTC 59.493 55.000 0.00 0.00 0.00 3.36
976 1404 1.847818 CTTTGGTTCACGTCGTCTCA 58.152 50.000 0.00 0.00 0.00 3.27
977 1405 1.787155 CTTTGGTTCACGTCGTCTCAG 59.213 52.381 0.00 0.00 0.00 3.35
978 1406 0.742505 TTGGTTCACGTCGTCTCAGT 59.257 50.000 0.00 0.00 0.00 3.41
979 1407 0.309922 TGGTTCACGTCGTCTCAGTC 59.690 55.000 0.00 0.00 0.00 3.51
990 1418 0.806241 GTCTCAGTCCGTCTCAGTCC 59.194 60.000 0.00 0.00 0.00 3.85
1233 1682 2.932614 GTCAGTTATGCTAGTGCCACTG 59.067 50.000 7.83 0.00 39.80 3.66
1235 1684 2.674852 CAGTTATGCTAGTGCCACTGTG 59.325 50.000 7.83 0.00 36.65 3.66
1242 1691 2.160417 GCTAGTGCCACTGTGACATTTC 59.840 50.000 7.83 0.00 0.00 2.17
1277 1726 4.636206 AGAGATGGTTTCCTTTTATGCGAC 59.364 41.667 0.00 0.00 0.00 5.19
1286 1735 4.904116 TCCTTTTATGCGACGCAATTAAG 58.096 39.130 28.24 25.02 43.62 1.85
1297 1746 4.318071 CGACGCAATTAAGTGACAATGTTG 59.682 41.667 7.18 0.00 0.00 3.33
1299 1748 4.975502 ACGCAATTAAGTGACAATGTTGTG 59.024 37.500 7.18 0.00 42.43 3.33
1302 1751 5.976534 GCAATTAAGTGACAATGTTGTGTGA 59.023 36.000 7.18 0.00 42.43 3.58
1303 1752 6.475076 GCAATTAAGTGACAATGTTGTGTGAA 59.525 34.615 7.18 0.00 42.43 3.18
1304 1753 7.306167 GCAATTAAGTGACAATGTTGTGTGAAG 60.306 37.037 7.18 0.00 42.43 3.02
1305 1754 6.993786 TTAAGTGACAATGTTGTGTGAAGA 57.006 33.333 2.65 0.00 42.43 2.87
1306 1755 4.882671 AGTGACAATGTTGTGTGAAGAC 57.117 40.909 2.65 0.00 42.43 3.01
1307 1756 4.260985 AGTGACAATGTTGTGTGAAGACA 58.739 39.130 2.65 0.00 42.43 3.41
1323 1772 7.806690 TGTGAAGACACTGATTAGCAAATTAC 58.193 34.615 0.00 0.00 46.07 1.89
1325 1774 8.171840 GTGAAGACACTGATTAGCAAATTACTC 58.828 37.037 0.00 0.00 42.99 2.59
1327 1781 8.798859 AAGACACTGATTAGCAAATTACTCAT 57.201 30.769 0.00 0.00 0.00 2.90
1363 1820 5.128499 TGCCAATTTGATGGAATTAATCGGT 59.872 36.000 0.00 0.00 43.54 4.69
1367 1824 8.389603 CCAATTTGATGGAATTAATCGGTTTTG 58.610 33.333 0.00 0.00 43.54 2.44
1500 1962 2.053244 GACCTCATCATCCACCTCCAT 58.947 52.381 0.00 0.00 0.00 3.41
1670 2138 1.367840 GCCAGTGGCGTATCTAGGG 59.632 63.158 20.55 0.00 39.62 3.53
1671 2139 2.050269 CCAGTGGCGTATCTAGGGG 58.950 63.158 0.00 0.00 0.00 4.79
1672 2140 1.472662 CCAGTGGCGTATCTAGGGGG 61.473 65.000 0.00 0.00 0.00 5.40
1673 2141 0.759436 CAGTGGCGTATCTAGGGGGT 60.759 60.000 0.00 0.00 0.00 4.95
1674 2142 0.759436 AGTGGCGTATCTAGGGGGTG 60.759 60.000 0.00 0.00 0.00 4.61
1675 2143 1.458777 TGGCGTATCTAGGGGGTGG 60.459 63.158 0.00 0.00 0.00 4.61
1676 2144 1.152398 GGCGTATCTAGGGGGTGGA 60.152 63.158 0.00 0.00 0.00 4.02
1677 2145 1.470165 GGCGTATCTAGGGGGTGGAC 61.470 65.000 0.00 0.00 0.00 4.02
1678 2146 0.757935 GCGTATCTAGGGGGTGGACA 60.758 60.000 0.00 0.00 0.00 4.02
1679 2147 1.329256 CGTATCTAGGGGGTGGACAG 58.671 60.000 0.00 0.00 0.00 3.51
1680 2148 1.718280 GTATCTAGGGGGTGGACAGG 58.282 60.000 0.00 0.00 0.00 4.00
1681 2149 0.566176 TATCTAGGGGGTGGACAGGG 59.434 60.000 0.00 0.00 0.00 4.45
1682 2150 1.537478 ATCTAGGGGGTGGACAGGGT 61.537 60.000 0.00 0.00 0.00 4.34
1683 2151 1.995626 CTAGGGGGTGGACAGGGTG 60.996 68.421 0.00 0.00 0.00 4.61
1684 2152 3.572715 TAGGGGGTGGACAGGGTGG 62.573 68.421 0.00 0.00 0.00 4.61
1686 2154 3.647771 GGGGTGGACAGGGTGGTC 61.648 72.222 0.00 0.00 37.06 4.02
1706 2174 2.236489 CATGGACCACCCTGGAATTT 57.764 50.000 0.00 0.00 40.96 1.82
1707 2175 2.102578 CATGGACCACCCTGGAATTTC 58.897 52.381 0.00 0.00 40.96 2.17
1708 2176 0.407918 TGGACCACCCTGGAATTTCC 59.592 55.000 8.59 8.59 40.96 3.13
1709 2177 0.324368 GGACCACCCTGGAATTTCCC 60.324 60.000 12.90 0.00 40.96 3.97
1710 2178 0.324368 GACCACCCTGGAATTTCCCC 60.324 60.000 12.90 0.00 40.96 4.81
1711 2179 1.077298 ACCACCCTGGAATTTCCCCA 61.077 55.000 12.90 0.00 40.96 4.96
1712 2180 0.339510 CCACCCTGGAATTTCCCCAT 59.660 55.000 12.90 0.00 40.96 4.00
1713 2181 1.573376 CCACCCTGGAATTTCCCCATA 59.427 52.381 12.90 0.00 40.96 2.74
1714 2182 2.023501 CCACCCTGGAATTTCCCCATAA 60.024 50.000 12.90 0.00 40.96 1.90
1715 2183 3.375207 CCACCCTGGAATTTCCCCATAAT 60.375 47.826 12.90 0.00 40.96 1.28
1716 2184 3.897505 CACCCTGGAATTTCCCCATAATC 59.102 47.826 12.90 0.00 35.03 1.75
1717 2185 3.799578 ACCCTGGAATTTCCCCATAATCT 59.200 43.478 12.90 0.00 35.03 2.40
1718 2186 4.988221 ACCCTGGAATTTCCCCATAATCTA 59.012 41.667 12.90 0.00 35.03 1.98
1719 2187 5.621329 ACCCTGGAATTTCCCCATAATCTAT 59.379 40.000 12.90 0.00 35.03 1.98
1720 2188 6.802660 ACCCTGGAATTTCCCCATAATCTATA 59.197 38.462 12.90 0.00 35.03 1.31
1721 2189 7.468830 ACCCTGGAATTTCCCCATAATCTATAT 59.531 37.037 12.90 0.00 35.03 0.86
1722 2190 9.014049 CCCTGGAATTTCCCCATAATCTATATA 57.986 37.037 12.90 0.00 35.03 0.86
1724 2192 9.566432 CTGGAATTTCCCCATAATCTATATAGC 57.434 37.037 12.90 0.00 35.03 2.97
1725 2193 9.067963 TGGAATTTCCCCATAATCTATATAGCA 57.932 33.333 12.90 0.00 35.03 3.49
1787 2255 9.716531 TTTATGTGAATATTTTGCATTTGTGGA 57.283 25.926 0.00 0.00 0.00 4.02
1788 2256 7.599630 ATGTGAATATTTTGCATTTGTGGAC 57.400 32.000 0.00 0.00 0.00 4.02
1789 2257 5.931146 TGTGAATATTTTGCATTTGTGGACC 59.069 36.000 0.00 0.00 0.00 4.46
1790 2258 5.931146 GTGAATATTTTGCATTTGTGGACCA 59.069 36.000 0.00 0.00 0.00 4.02
1791 2259 5.931146 TGAATATTTTGCATTTGTGGACCAC 59.069 36.000 18.28 18.28 34.56 4.16
1792 2260 2.611225 TTTTGCATTTGTGGACCACC 57.389 45.000 22.00 6.52 32.73 4.61
1793 2261 1.489481 TTTGCATTTGTGGACCACCA 58.511 45.000 22.00 8.39 44.76 4.17
1801 2269 3.179284 TGGACCACCATGGCATGT 58.821 55.556 24.80 6.36 42.67 3.21
1802 2270 1.464273 TGGACCACCATGGCATGTT 59.536 52.632 24.80 9.47 42.67 2.71
1803 2271 0.899253 TGGACCACCATGGCATGTTG 60.899 55.000 24.80 21.02 42.67 3.33
1805 2273 1.606885 GACCACCATGGCATGTTGGG 61.607 60.000 37.11 28.76 46.08 4.12
1806 2274 2.580276 CACCATGGCATGTTGGGC 59.420 61.111 24.80 0.00 37.32 5.36
1807 2275 1.985662 CACCATGGCATGTTGGGCT 60.986 57.895 24.80 0.00 37.32 5.19
1808 2276 0.683828 CACCATGGCATGTTGGGCTA 60.684 55.000 24.80 0.00 37.32 3.93
1809 2277 0.396139 ACCATGGCATGTTGGGCTAG 60.396 55.000 24.80 10.19 37.32 3.42
1810 2278 1.737816 CATGGCATGTTGGGCTAGC 59.262 57.895 19.32 6.04 0.00 3.42
1811 2279 0.754217 CATGGCATGTTGGGCTAGCT 60.754 55.000 19.32 0.00 0.00 3.32
1812 2280 0.846015 ATGGCATGTTGGGCTAGCTA 59.154 50.000 15.72 0.96 0.00 3.32
1813 2281 0.107214 TGGCATGTTGGGCTAGCTAC 60.107 55.000 15.72 10.98 0.00 3.58
1814 2282 1.160329 GGCATGTTGGGCTAGCTACG 61.160 60.000 15.72 1.04 0.00 3.51
1815 2283 1.776034 GCATGTTGGGCTAGCTACGC 61.776 60.000 15.72 6.93 0.00 4.42
1816 2284 1.146263 ATGTTGGGCTAGCTACGCC 59.854 57.895 15.72 19.98 46.83 5.68
1821 2289 2.586357 GGCTAGCTACGCCACTGC 60.586 66.667 22.05 9.22 46.77 4.40
1822 2290 2.586357 GCTAGCTACGCCACTGCC 60.586 66.667 7.70 0.00 0.00 4.85
2007 2485 4.640855 CGGGTGCAGTGACGACGT 62.641 66.667 0.00 0.00 0.00 4.34
2143 2621 2.202932 CTGAACTCGATGGCCGGG 60.203 66.667 2.18 0.00 46.23 5.73
2239 2735 3.745803 AGCGGGTTCGAGTCGTCC 61.746 66.667 13.12 15.34 39.00 4.79
2400 2896 4.424566 GTTCGACGGCGGCTACCA 62.425 66.667 12.58 0.00 38.28 3.25
2530 3030 1.691976 TGAACTCATCCAACCGACAGT 59.308 47.619 0.00 0.00 0.00 3.55
2541 3041 1.068417 CCGACAGTCCGACACCAAA 59.932 57.895 0.40 0.00 0.00 3.28
2630 3130 5.697826 ACGCGAGTTTATAATACTCCTAGC 58.302 41.667 15.93 13.56 46.40 3.42
2716 3229 9.793252 TTGTTTCTTTCTTTCTTTCATCTTGAG 57.207 29.630 0.00 0.00 0.00 3.02
2810 3330 8.896744 CGACGGAGGGATACATATATTACTTTA 58.103 37.037 0.00 0.00 39.74 1.85
2998 3524 1.921982 TTGGTGATTGGTGATGGTGG 58.078 50.000 0.00 0.00 0.00 4.61
2999 3525 1.071434 TGGTGATTGGTGATGGTGGA 58.929 50.000 0.00 0.00 0.00 4.02
3036 3562 1.012486 GGCTGGATCGTTCGTTCGTT 61.012 55.000 2.67 0.00 0.00 3.85
3037 3563 0.365859 GCTGGATCGTTCGTTCGTTC 59.634 55.000 2.67 4.04 0.00 3.95
3038 3564 0.633733 CTGGATCGTTCGTTCGTTCG 59.366 55.000 2.67 0.00 32.49 3.95
3039 3565 0.040157 TGGATCGTTCGTTCGTTCGT 60.040 50.000 9.89 1.87 32.49 3.85
3146 3676 2.260844 ATTAGCACATGGACGATGGG 57.739 50.000 0.00 0.00 38.68 4.00
3176 3719 7.862372 GCTTAATCACAGTGAAATGAAGTTTGA 59.138 33.333 7.50 0.00 0.00 2.69
3193 3736 8.930760 TGAAGTTTGAAAAACGAAAAACATCAT 58.069 25.926 0.00 0.00 36.12 2.45
3231 3775 3.503363 TGTTAGAAGGTGCAGCTTTCATG 59.497 43.478 30.17 0.00 35.86 3.07
3236 3780 0.248289 GGTGCAGCTTTCATGGCATT 59.752 50.000 9.07 0.00 38.68 3.56
3262 3806 4.843728 CTGCCTAGGTAGGTTGATTTTGA 58.156 43.478 18.61 0.00 45.42 2.69
3265 3809 5.885912 TGCCTAGGTAGGTTGATTTTGAATC 59.114 40.000 11.31 0.00 45.42 2.52
3266 3810 6.122964 GCCTAGGTAGGTTGATTTTGAATCT 58.877 40.000 11.31 0.00 45.42 2.40
3267 3811 6.261158 GCCTAGGTAGGTTGATTTTGAATCTC 59.739 42.308 11.31 0.00 45.42 2.75
3268 3812 7.338710 CCTAGGTAGGTTGATTTTGAATCTCA 58.661 38.462 0.00 0.00 38.69 3.27
3269 3813 7.281100 CCTAGGTAGGTTGATTTTGAATCTCAC 59.719 40.741 0.00 0.38 38.69 3.51
3270 3814 6.784031 AGGTAGGTTGATTTTGAATCTCACT 58.216 36.000 2.74 1.32 0.00 3.41
3271 3815 6.881602 AGGTAGGTTGATTTTGAATCTCACTC 59.118 38.462 2.74 0.00 0.00 3.51
3272 3816 6.655003 GGTAGGTTGATTTTGAATCTCACTCA 59.345 38.462 2.74 0.00 0.00 3.41
3273 3817 7.174946 GGTAGGTTGATTTTGAATCTCACTCAA 59.825 37.037 2.74 0.00 0.00 3.02
3274 3818 6.974965 AGGTTGATTTTGAATCTCACTCAAC 58.025 36.000 12.85 12.85 38.48 3.18
3275 3819 6.547141 AGGTTGATTTTGAATCTCACTCAACA 59.453 34.615 18.21 0.00 39.61 3.33
3276 3820 6.860023 GGTTGATTTTGAATCTCACTCAACAG 59.140 38.462 18.21 0.00 39.61 3.16
3277 3821 6.564709 TGATTTTGAATCTCACTCAACAGG 57.435 37.500 2.74 0.00 32.61 4.00
3278 3822 6.298361 TGATTTTGAATCTCACTCAACAGGA 58.702 36.000 2.74 0.00 32.61 3.86
3279 3823 6.772233 TGATTTTGAATCTCACTCAACAGGAA 59.228 34.615 2.74 0.00 32.61 3.36
3280 3824 7.285172 TGATTTTGAATCTCACTCAACAGGAAA 59.715 33.333 2.74 0.00 32.61 3.13
3281 3825 7.403312 TTTTGAATCTCACTCAACAGGAAAA 57.597 32.000 0.00 0.00 32.61 2.29
3282 3826 6.624352 TTGAATCTCACTCAACAGGAAAAG 57.376 37.500 0.00 0.00 0.00 2.27
3283 3827 5.928976 TGAATCTCACTCAACAGGAAAAGA 58.071 37.500 0.00 0.00 0.00 2.52
3284 3828 5.760253 TGAATCTCACTCAACAGGAAAAGAC 59.240 40.000 0.00 0.00 0.00 3.01
3285 3829 5.559148 ATCTCACTCAACAGGAAAAGACT 57.441 39.130 0.00 0.00 0.00 3.24
3286 3830 4.950050 TCTCACTCAACAGGAAAAGACTC 58.050 43.478 0.00 0.00 0.00 3.36
3287 3831 4.651503 TCTCACTCAACAGGAAAAGACTCT 59.348 41.667 0.00 0.00 0.00 3.24
3288 3832 4.950050 TCACTCAACAGGAAAAGACTCTC 58.050 43.478 0.00 0.00 0.00 3.20
3289 3833 3.738282 CACTCAACAGGAAAAGACTCTCG 59.262 47.826 0.00 0.00 0.00 4.04
3290 3834 2.734079 CTCAACAGGAAAAGACTCTCGC 59.266 50.000 0.00 0.00 0.00 5.03
3291 3835 2.365617 TCAACAGGAAAAGACTCTCGCT 59.634 45.455 0.00 0.00 0.00 4.93
3292 3836 2.734079 CAACAGGAAAAGACTCTCGCTC 59.266 50.000 0.00 0.00 0.00 5.03
3293 3837 1.068194 ACAGGAAAAGACTCTCGCTCG 60.068 52.381 0.00 0.00 0.00 5.03
3294 3838 0.109039 AGGAAAAGACTCTCGCTCGC 60.109 55.000 0.00 0.00 0.00 5.03
3295 3839 1.406970 GGAAAAGACTCTCGCTCGCG 61.407 60.000 0.00 0.00 41.35 5.87
3296 3840 0.729816 GAAAAGACTCTCGCTCGCGT 60.730 55.000 5.77 0.00 40.74 6.01
3297 3841 0.729816 AAAAGACTCTCGCTCGCGTC 60.730 55.000 5.77 1.49 40.74 5.19
3298 3842 2.836067 AAAGACTCTCGCTCGCGTCG 62.836 60.000 5.77 11.68 40.74 5.12
3317 3861 3.465403 CTCCAGGGGGCGACTCAG 61.465 72.222 0.00 0.00 0.00 3.35
3352 3896 4.467107 GCCCTCGACCTCCCTCCT 62.467 72.222 0.00 0.00 0.00 3.69
3353 3897 2.123640 CCCTCGACCTCCCTCCTC 60.124 72.222 0.00 0.00 0.00 3.71
3354 3898 2.123640 CCTCGACCTCCCTCCTCC 60.124 72.222 0.00 0.00 0.00 4.30
3355 3899 2.123640 CTCGACCTCCCTCCTCCC 60.124 72.222 0.00 0.00 0.00 4.30
3356 3900 3.742248 CTCGACCTCCCTCCTCCCC 62.742 73.684 0.00 0.00 0.00 4.81
3357 3901 3.756783 CGACCTCCCTCCTCCCCT 61.757 72.222 0.00 0.00 0.00 4.79
3358 3902 2.788589 GACCTCCCTCCTCCCCTT 59.211 66.667 0.00 0.00 0.00 3.95
3359 3903 1.383386 GACCTCCCTCCTCCCCTTC 60.383 68.421 0.00 0.00 0.00 3.46
3360 3904 1.869452 ACCTCCCTCCTCCCCTTCT 60.869 63.158 0.00 0.00 0.00 2.85
3361 3905 1.398234 CCTCCCTCCTCCCCTTCTT 59.602 63.158 0.00 0.00 0.00 2.52
3362 3906 0.692756 CCTCCCTCCTCCCCTTCTTC 60.693 65.000 0.00 0.00 0.00 2.87
3363 3907 0.692756 CTCCCTCCTCCCCTTCTTCC 60.693 65.000 0.00 0.00 0.00 3.46
3364 3908 1.162951 TCCCTCCTCCCCTTCTTCCT 61.163 60.000 0.00 0.00 0.00 3.36
3365 3909 0.692756 CCCTCCTCCCCTTCTTCCTC 60.693 65.000 0.00 0.00 0.00 3.71
3366 3910 1.045911 CCTCCTCCCCTTCTTCCTCG 61.046 65.000 0.00 0.00 0.00 4.63
3367 3911 1.681486 CTCCTCCCCTTCTTCCTCGC 61.681 65.000 0.00 0.00 0.00 5.03
3368 3912 2.736826 CCTCCCCTTCTTCCTCGCC 61.737 68.421 0.00 0.00 0.00 5.54
3369 3913 3.075005 TCCCCTTCTTCCTCGCCG 61.075 66.667 0.00 0.00 0.00 6.46
3370 3914 4.840005 CCCCTTCTTCCTCGCCGC 62.840 72.222 0.00 0.00 0.00 6.53
3371 3915 4.840005 CCCTTCTTCCTCGCCGCC 62.840 72.222 0.00 0.00 0.00 6.13
3372 3916 4.082523 CCTTCTTCCTCGCCGCCA 62.083 66.667 0.00 0.00 0.00 5.69
3373 3917 2.815647 CTTCTTCCTCGCCGCCAC 60.816 66.667 0.00 0.00 0.00 5.01
3374 3918 4.388499 TTCTTCCTCGCCGCCACC 62.388 66.667 0.00 0.00 0.00 4.61
3380 3924 4.735132 CTCGCCGCCACCGAAGAA 62.735 66.667 0.00 0.00 36.29 2.52
3381 3925 4.735132 TCGCCGCCACCGAAGAAG 62.735 66.667 0.00 0.00 36.29 2.85
3384 3928 2.434359 CCGCCACCGAAGAAGGTC 60.434 66.667 0.00 0.00 43.89 3.85
3385 3929 2.809601 CGCCACCGAAGAAGGTCG 60.810 66.667 0.00 0.00 43.89 4.79
3391 3935 2.881352 CGAAGAAGGTCGGCGAGC 60.881 66.667 29.85 29.85 37.37 5.03
3392 3936 2.881352 GAAGAAGGTCGGCGAGCG 60.881 66.667 30.22 0.00 35.00 5.03
3393 3937 3.338126 GAAGAAGGTCGGCGAGCGA 62.338 63.158 30.22 0.00 35.00 4.93
3394 3938 2.814183 GAAGAAGGTCGGCGAGCGAA 62.814 60.000 30.22 0.00 35.00 4.70
3395 3939 2.820767 AAGAAGGTCGGCGAGCGAAG 62.821 60.000 30.22 0.00 35.00 3.79
3434 3978 4.048470 GGCGGGCCTTCCTCCTTT 62.048 66.667 0.84 0.00 0.00 3.11
3435 3979 2.438614 GCGGGCCTTCCTCCTTTC 60.439 66.667 0.84 0.00 0.00 2.62
3436 3980 2.972819 GCGGGCCTTCCTCCTTTCT 61.973 63.158 0.84 0.00 0.00 2.52
3437 3981 1.685820 CGGGCCTTCCTCCTTTCTT 59.314 57.895 0.84 0.00 0.00 2.52
3438 3982 0.393132 CGGGCCTTCCTCCTTTCTTC 60.393 60.000 0.84 0.00 0.00 2.87
3439 3983 0.698818 GGGCCTTCCTCCTTTCTTCA 59.301 55.000 0.84 0.00 0.00 3.02
3440 3984 1.340502 GGGCCTTCCTCCTTTCTTCAG 60.341 57.143 0.84 0.00 0.00 3.02
3441 3985 1.340502 GGCCTTCCTCCTTTCTTCAGG 60.341 57.143 0.00 0.00 34.86 3.86
3442 3986 1.630878 GCCTTCCTCCTTTCTTCAGGA 59.369 52.381 0.00 0.00 41.00 3.86
3448 3992 2.668850 TCCTTTCTTCAGGAGGGGAT 57.331 50.000 0.00 0.00 38.11 3.85
3449 3993 2.482494 TCCTTTCTTCAGGAGGGGATC 58.518 52.381 0.00 0.00 38.11 3.36
3459 4003 3.123111 AGGGGATCCTCTGGCTGA 58.877 61.111 15.29 0.00 39.80 4.26
3460 4004 1.074623 AGGGGATCCTCTGGCTGAG 60.075 63.158 15.29 13.90 39.80 3.35
3461 4005 1.074926 GGGGATCCTCTGGCTGAGA 60.075 63.158 21.42 9.02 45.39 3.27
3462 4006 0.473501 GGGGATCCTCTGGCTGAGAT 60.474 60.000 21.42 12.91 45.39 2.75
3463 4007 0.686224 GGGATCCTCTGGCTGAGATG 59.314 60.000 21.42 7.08 45.39 2.90
3464 4008 0.035176 GGATCCTCTGGCTGAGATGC 59.965 60.000 21.42 13.88 45.39 3.91
3465 4009 0.757512 GATCCTCTGGCTGAGATGCA 59.242 55.000 21.42 0.00 45.39 3.96
3466 4010 1.348366 GATCCTCTGGCTGAGATGCAT 59.652 52.381 21.42 0.00 45.39 3.96
3467 4011 0.757512 TCCTCTGGCTGAGATGCATC 59.242 55.000 19.37 19.37 45.39 3.91
3468 4012 0.600518 CCTCTGGCTGAGATGCATCG 60.601 60.000 20.67 8.30 45.39 3.84
3469 4013 0.600518 CTCTGGCTGAGATGCATCGG 60.601 60.000 20.67 15.26 45.39 4.18
3472 4016 2.587194 GCTGAGATGCATCGGCGT 60.587 61.111 20.67 3.25 45.35 5.68
3478 4022 4.552365 ATGCATCGGCGTCCCTGG 62.552 66.667 6.85 0.00 45.35 4.45
3486 4030 4.382320 GCGTCCCTGGGCGTACAA 62.382 66.667 23.72 0.00 0.00 2.41
3487 4031 2.433664 CGTCCCTGGGCGTACAAC 60.434 66.667 17.72 5.80 0.00 3.32
3488 4032 2.745037 GTCCCTGGGCGTACAACA 59.255 61.111 8.22 0.00 0.00 3.33
3489 4033 1.298667 GTCCCTGGGCGTACAACAT 59.701 57.895 8.22 0.00 0.00 2.71
3490 4034 1.024579 GTCCCTGGGCGTACAACATG 61.025 60.000 8.22 0.00 0.00 3.21
3491 4035 1.748879 CCCTGGGCGTACAACATGG 60.749 63.158 0.00 0.00 0.00 3.66
3492 4036 1.298340 CCTGGGCGTACAACATGGA 59.702 57.895 0.00 0.00 0.00 3.41
3493 4037 0.744414 CCTGGGCGTACAACATGGAG 60.744 60.000 0.00 0.00 0.00 3.86
3494 4038 0.744414 CTGGGCGTACAACATGGAGG 60.744 60.000 0.00 0.00 0.00 4.30
3495 4039 2.112815 GGGCGTACAACATGGAGGC 61.113 63.158 0.00 0.00 41.12 4.70
3496 4040 2.461110 GGCGTACAACATGGAGGCG 61.461 63.158 0.00 0.08 42.67 5.52
3497 4041 2.461110 GCGTACAACATGGAGGCGG 61.461 63.158 0.00 0.00 32.01 6.13
3498 4042 1.216977 CGTACAACATGGAGGCGGA 59.783 57.895 0.00 0.00 0.00 5.54
3499 4043 0.806102 CGTACAACATGGAGGCGGAG 60.806 60.000 0.00 0.00 0.00 4.63
3500 4044 0.249398 GTACAACATGGAGGCGGAGT 59.751 55.000 0.00 0.00 0.00 3.85
3501 4045 0.981183 TACAACATGGAGGCGGAGTT 59.019 50.000 0.00 0.00 0.00 3.01
3502 4046 0.606401 ACAACATGGAGGCGGAGTTG 60.606 55.000 0.00 0.00 43.71 3.16
3503 4047 1.002134 AACATGGAGGCGGAGTTGG 60.002 57.895 0.00 0.00 0.00 3.77
3504 4048 2.825836 CATGGAGGCGGAGTTGGC 60.826 66.667 0.00 0.00 0.00 4.52
3505 4049 4.473520 ATGGAGGCGGAGTTGGCG 62.474 66.667 0.00 0.00 39.82 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.402121 AACCCCTTCAGCTCTTGTCC 59.598 55.000 0.00 0.00 0.00 4.02
8 9 3.356529 ACATAACCCCTTCAGCTCTTG 57.643 47.619 0.00 0.00 0.00 3.02
10 11 2.431057 CGTACATAACCCCTTCAGCTCT 59.569 50.000 0.00 0.00 0.00 4.09
14 15 5.107133 CAGTTACGTACATAACCCCTTCAG 58.893 45.833 8.16 0.00 35.95 3.02
67 68 9.639601 CAGTGTCAAATTGATACTACTACTGAA 57.360 33.333 21.84 0.00 45.19 3.02
68 69 8.803235 ACAGTGTCAAATTGATACTACTACTGA 58.197 33.333 21.84 0.00 45.19 3.41
69 70 8.988064 ACAGTGTCAAATTGATACTACTACTG 57.012 34.615 21.84 13.38 45.19 2.74
70 71 8.803235 TGACAGTGTCAAATTGATACTACTACT 58.197 33.333 23.55 5.74 45.19 2.57
71 72 8.981724 TGACAGTGTCAAATTGATACTACTAC 57.018 34.615 23.55 14.34 45.19 2.73
108 109 7.281774 GGTTATTCATGCATGTAGAGGATATGG 59.718 40.741 25.43 0.00 0.00 2.74
109 110 7.825761 TGGTTATTCATGCATGTAGAGGATATG 59.174 37.037 25.43 0.00 0.00 1.78
112 113 6.191657 TGGTTATTCATGCATGTAGAGGAT 57.808 37.500 25.43 13.05 0.00 3.24
113 114 5.628797 TGGTTATTCATGCATGTAGAGGA 57.371 39.130 25.43 2.81 0.00 3.71
115 116 7.087409 TGTTTGGTTATTCATGCATGTAGAG 57.913 36.000 25.43 0.12 0.00 2.43
158 162 5.277297 CGTGTCACTTTAAAGCAATGTCTCA 60.277 40.000 15.24 5.64 0.00 3.27
167 171 3.396560 AGGGTACGTGTCACTTTAAAGC 58.603 45.455 15.24 0.00 0.00 3.51
170 174 5.726980 ATGTAGGGTACGTGTCACTTTAA 57.273 39.130 0.00 0.00 0.00 1.52
171 175 5.243507 TCAATGTAGGGTACGTGTCACTTTA 59.756 40.000 0.00 0.00 0.00 1.85
190 194 2.167075 GGCCCTTCAATTCCTGTCAATG 59.833 50.000 0.00 0.00 0.00 2.82
209 213 2.770589 TTACGTACGTAGCCCCGGC 61.771 63.158 25.56 0.00 42.33 6.13
210 214 1.064134 GTTACGTACGTAGCCCCGG 59.936 63.158 26.15 0.00 31.71 5.73
211 215 0.248215 CAGTTACGTACGTAGCCCCG 60.248 60.000 30.65 19.38 33.22 5.73
212 216 0.811281 ACAGTTACGTACGTAGCCCC 59.189 55.000 30.65 18.77 33.22 5.80
254 260 4.257731 TGTCGCCTCTTATGTAATTTGCA 58.742 39.130 0.00 0.00 0.00 4.08
255 261 4.875544 TGTCGCCTCTTATGTAATTTGC 57.124 40.909 0.00 0.00 0.00 3.68
256 262 6.037062 TGTCATGTCGCCTCTTATGTAATTTG 59.963 38.462 0.00 0.00 0.00 2.32
257 263 6.112734 TGTCATGTCGCCTCTTATGTAATTT 58.887 36.000 0.00 0.00 0.00 1.82
266 275 3.827008 ACATATGTCATGTCGCCTCTT 57.173 42.857 1.41 0.00 0.00 2.85
271 280 3.543494 GCAACAAACATATGTCATGTCGC 59.457 43.478 21.03 18.98 31.81 5.19
275 288 3.853103 CACGGCAACAAACATATGTCATG 59.147 43.478 9.23 13.55 31.81 3.07
276 289 3.673052 GCACGGCAACAAACATATGTCAT 60.673 43.478 9.23 0.00 31.81 3.06
277 290 2.351253 GCACGGCAACAAACATATGTCA 60.351 45.455 9.23 0.00 31.81 3.58
278 291 2.095263 AGCACGGCAACAAACATATGTC 60.095 45.455 9.23 0.00 31.81 3.06
279 292 1.885887 AGCACGGCAACAAACATATGT 59.114 42.857 1.41 1.41 34.24 2.29
280 293 2.634982 AGCACGGCAACAAACATATG 57.365 45.000 0.00 0.00 0.00 1.78
281 294 2.097466 GCTAGCACGGCAACAAACATAT 59.903 45.455 10.63 0.00 0.00 1.78
282 295 1.466950 GCTAGCACGGCAACAAACATA 59.533 47.619 10.63 0.00 0.00 2.29
323 338 4.156556 TCTTGATGCTGCAACAAGTTATCC 59.843 41.667 35.73 8.50 42.30 2.59
426 460 0.839946 GCATCCTCCACTACCACCAT 59.160 55.000 0.00 0.00 0.00 3.55
590 883 0.388520 GTGAAATCTTTGGCCCGTGC 60.389 55.000 0.00 0.00 0.00 5.34
684 1062 2.099427 GCTAGCCAGTGTCAGTACTACC 59.901 54.545 2.29 0.00 0.00 3.18
708 1086 1.000955 GACAGTACACACACAGGGAGG 59.999 57.143 0.00 0.00 0.00 4.30
966 1394 1.290491 GAGACGGACTGAGACGACGT 61.290 60.000 0.00 0.00 40.85 4.34
970 1398 0.444651 GACTGAGACGGACTGAGACG 59.555 60.000 0.78 0.00 34.09 4.18
971 1399 0.806241 GGACTGAGACGGACTGAGAC 59.194 60.000 0.78 0.00 34.09 3.36
972 1400 0.673956 CGGACTGAGACGGACTGAGA 60.674 60.000 0.78 0.00 34.09 3.27
973 1401 0.956410 ACGGACTGAGACGGACTGAG 60.956 60.000 6.32 0.00 35.98 3.35
974 1402 0.954449 GACGGACTGAGACGGACTGA 60.954 60.000 6.32 0.00 0.00 3.41
975 1403 1.502640 GACGGACTGAGACGGACTG 59.497 63.158 6.32 0.00 0.00 3.51
976 1404 2.033755 CGACGGACTGAGACGGACT 61.034 63.158 6.32 0.00 0.00 3.85
977 1405 2.479650 CGACGGACTGAGACGGAC 59.520 66.667 6.32 0.00 0.00 4.79
978 1406 2.745100 CCGACGGACTGAGACGGA 60.745 66.667 8.64 0.00 45.31 4.69
979 1407 4.477975 GCCGACGGACTGAGACGG 62.478 72.222 20.50 0.00 45.26 4.79
1169 1614 1.454663 GATCAAGGAGGGGGCAAGC 60.455 63.158 0.00 0.00 0.00 4.01
1274 1723 4.065423 ACATTGTCACTTAATTGCGTCG 57.935 40.909 0.00 0.00 0.00 5.12
1277 1726 4.975502 ACACAACATTGTCACTTAATTGCG 59.024 37.500 0.00 0.00 39.91 4.85
1286 1735 4.614555 TGTCTTCACACAACATTGTCAC 57.385 40.909 0.00 0.00 39.91 3.67
1299 1748 8.034058 AGTAATTTGCTAATCAGTGTCTTCAC 57.966 34.615 0.00 0.00 44.15 3.18
1302 1751 8.798859 ATGAGTAATTTGCTAATCAGTGTCTT 57.201 30.769 0.00 0.00 30.14 3.01
1303 1752 8.043113 TGATGAGTAATTTGCTAATCAGTGTCT 58.957 33.333 9.74 0.00 30.87 3.41
1304 1753 8.201554 TGATGAGTAATTTGCTAATCAGTGTC 57.798 34.615 9.74 0.00 30.87 3.67
1305 1754 8.565896 TTGATGAGTAATTTGCTAATCAGTGT 57.434 30.769 12.61 0.00 35.79 3.55
1314 1763 9.199982 CACTTCAAAATTGATGAGTAATTTGCT 57.800 29.630 13.92 0.00 37.68 3.91
1315 1764 7.953710 GCACTTCAAAATTGATGAGTAATTTGC 59.046 33.333 13.92 8.57 37.68 3.68
1316 1765 8.437742 GGCACTTCAAAATTGATGAGTAATTTG 58.562 33.333 13.92 0.00 37.68 2.32
1317 1766 8.149647 TGGCACTTCAAAATTGATGAGTAATTT 58.850 29.630 13.92 0.00 38.88 1.82
1320 1769 6.647334 TGGCACTTCAAAATTGATGAGTAA 57.353 33.333 13.92 0.07 37.00 2.24
1323 1772 7.171848 TCAAATTGGCACTTCAAAATTGATGAG 59.828 33.333 13.92 8.47 37.00 2.90
1325 1774 7.192148 TCAAATTGGCACTTCAAAATTGATG 57.808 32.000 7.31 7.31 37.00 3.07
1327 1781 6.205076 CCATCAAATTGGCACTTCAAAATTGA 59.795 34.615 0.00 0.00 39.03 2.57
1363 1820 7.148440 GCCTAATAATGCAGCAACAAATCAAAA 60.148 33.333 0.00 0.00 0.00 2.44
1367 1824 4.746611 GGCCTAATAATGCAGCAACAAATC 59.253 41.667 0.00 0.00 0.00 2.17
1500 1962 0.400213 ACTTGTTGCCGAGGATGGAA 59.600 50.000 0.00 0.00 0.00 3.53
1563 2025 3.970640 AGGAGTTCCAGAAGTTCTTGACT 59.029 43.478 1.56 7.39 38.32 3.41
1652 2120 1.367840 CCCTAGATACGCCACTGGC 59.632 63.158 10.35 10.35 46.75 4.85
1653 2121 1.472662 CCCCCTAGATACGCCACTGG 61.473 65.000 0.00 0.00 0.00 4.00
1654 2122 0.759436 ACCCCCTAGATACGCCACTG 60.759 60.000 0.00 0.00 0.00 3.66
1655 2123 0.759436 CACCCCCTAGATACGCCACT 60.759 60.000 0.00 0.00 0.00 4.00
1656 2124 1.746517 CACCCCCTAGATACGCCAC 59.253 63.158 0.00 0.00 0.00 5.01
1657 2125 1.458777 CCACCCCCTAGATACGCCA 60.459 63.158 0.00 0.00 0.00 5.69
1658 2126 1.152398 TCCACCCCCTAGATACGCC 60.152 63.158 0.00 0.00 0.00 5.68
1659 2127 0.757935 TGTCCACCCCCTAGATACGC 60.758 60.000 0.00 0.00 0.00 4.42
1660 2128 1.329256 CTGTCCACCCCCTAGATACG 58.671 60.000 0.00 0.00 0.00 3.06
1661 2129 1.718280 CCTGTCCACCCCCTAGATAC 58.282 60.000 0.00 0.00 0.00 2.24
1662 2130 0.566176 CCCTGTCCACCCCCTAGATA 59.434 60.000 0.00 0.00 0.00 1.98
1663 2131 1.318380 CCCTGTCCACCCCCTAGAT 59.682 63.158 0.00 0.00 0.00 1.98
1664 2132 2.181773 ACCCTGTCCACCCCCTAGA 61.182 63.158 0.00 0.00 0.00 2.43
1665 2133 1.995626 CACCCTGTCCACCCCCTAG 60.996 68.421 0.00 0.00 0.00 3.02
1666 2134 2.124085 CACCCTGTCCACCCCCTA 59.876 66.667 0.00 0.00 0.00 3.53
1669 2137 3.647771 GACCACCCTGTCCACCCC 61.648 72.222 0.00 0.00 0.00 4.95
1675 2143 1.299976 GTCCATGGACCACCCTGTC 59.700 63.158 31.37 5.53 39.08 3.51
1676 2144 3.495729 GTCCATGGACCACCCTGT 58.504 61.111 31.37 0.00 39.08 4.00
1687 2155 2.102578 GAAATTCCAGGGTGGTCCATG 58.897 52.381 0.00 0.00 44.12 3.66
1688 2156 1.007118 GGAAATTCCAGGGTGGTCCAT 59.993 52.381 7.23 0.00 39.03 3.41
1689 2157 0.407918 GGAAATTCCAGGGTGGTCCA 59.592 55.000 7.23 0.00 39.03 4.02
1690 2158 0.324368 GGGAAATTCCAGGGTGGTCC 60.324 60.000 14.68 0.00 38.64 4.46
1691 2159 0.324368 GGGGAAATTCCAGGGTGGTC 60.324 60.000 14.68 0.00 38.64 4.02
1692 2160 1.077298 TGGGGAAATTCCAGGGTGGT 61.077 55.000 14.68 0.00 38.64 4.16
1693 2161 0.339510 ATGGGGAAATTCCAGGGTGG 59.660 55.000 14.68 0.00 38.64 4.61
1694 2162 3.396685 TTATGGGGAAATTCCAGGGTG 57.603 47.619 14.68 0.00 38.64 4.61
1695 2163 3.799578 AGATTATGGGGAAATTCCAGGGT 59.200 43.478 14.68 0.00 38.64 4.34
1696 2164 4.475919 AGATTATGGGGAAATTCCAGGG 57.524 45.455 14.68 0.00 38.64 4.45
1698 2166 9.566432 GCTATATAGATTATGGGGAAATTCCAG 57.434 37.037 14.68 0.00 38.64 3.86
1699 2167 9.067963 TGCTATATAGATTATGGGGAAATTCCA 57.932 33.333 14.68 0.00 38.64 3.53
1761 2229 9.716531 TCCACAAATGCAAAATATTCACATAAA 57.283 25.926 0.00 0.00 0.00 1.40
1762 2230 9.149225 GTCCACAAATGCAAAATATTCACATAA 57.851 29.630 0.00 0.00 0.00 1.90
1763 2231 7.763528 GGTCCACAAATGCAAAATATTCACATA 59.236 33.333 0.00 0.00 0.00 2.29
1764 2232 6.594937 GGTCCACAAATGCAAAATATTCACAT 59.405 34.615 0.00 0.00 0.00 3.21
1765 2233 5.931146 GGTCCACAAATGCAAAATATTCACA 59.069 36.000 0.00 0.00 0.00 3.58
1766 2234 5.931146 TGGTCCACAAATGCAAAATATTCAC 59.069 36.000 0.00 0.00 0.00 3.18
1767 2235 5.931146 GTGGTCCACAAATGCAAAATATTCA 59.069 36.000 17.59 0.00 34.08 2.57
1768 2236 5.351189 GGTGGTCCACAAATGCAAAATATTC 59.649 40.000 23.48 0.00 35.86 1.75
1769 2237 5.221803 TGGTGGTCCACAAATGCAAAATATT 60.222 36.000 23.48 0.00 39.03 1.28
1770 2238 4.285517 TGGTGGTCCACAAATGCAAAATAT 59.714 37.500 23.48 0.00 39.03 1.28
1771 2239 3.643320 TGGTGGTCCACAAATGCAAAATA 59.357 39.130 23.48 0.00 39.03 1.40
1772 2240 2.437281 TGGTGGTCCACAAATGCAAAAT 59.563 40.909 23.48 0.00 39.03 1.82
1773 2241 1.833630 TGGTGGTCCACAAATGCAAAA 59.166 42.857 23.48 0.00 39.03 2.44
1774 2242 1.489481 TGGTGGTCCACAAATGCAAA 58.511 45.000 23.48 0.00 39.03 3.68
1775 2243 3.214023 TGGTGGTCCACAAATGCAA 57.786 47.368 23.48 0.00 39.03 4.08
1784 2252 0.899253 CAACATGCCATGGTGGTCCA 60.899 55.000 15.08 2.10 44.17 4.02
1785 2253 1.892338 CAACATGCCATGGTGGTCC 59.108 57.895 15.08 0.00 44.17 4.46
1790 2258 0.396139 CTAGCCCAACATGCCATGGT 60.396 55.000 14.67 0.00 34.79 3.55
1791 2259 1.741327 GCTAGCCCAACATGCCATGG 61.741 60.000 7.63 7.63 36.42 3.66
1792 2260 0.754217 AGCTAGCCCAACATGCCATG 60.754 55.000 12.13 2.40 0.00 3.66
1793 2261 0.846015 TAGCTAGCCCAACATGCCAT 59.154 50.000 12.13 0.00 0.00 4.40
1794 2262 0.107214 GTAGCTAGCCCAACATGCCA 60.107 55.000 12.13 0.00 0.00 4.92
1795 2263 1.160329 CGTAGCTAGCCCAACATGCC 61.160 60.000 12.13 0.00 0.00 4.40
1796 2264 2.311294 CGTAGCTAGCCCAACATGC 58.689 57.895 12.13 0.00 0.00 4.06
2007 2485 2.910479 ACAGCGACGACAGGGACA 60.910 61.111 0.00 0.00 0.00 4.02
2239 2735 3.476646 CTGCTGCTCTGCGTCGTG 61.477 66.667 0.00 0.00 35.36 4.35
2359 2855 0.827925 AGTCGGACCACTTGAGCTCA 60.828 55.000 13.74 13.74 0.00 4.26
2400 2896 2.596851 CCCTGCTGGTGGTACTGCT 61.597 63.158 9.00 0.00 36.43 4.24
2488 2984 1.909700 TCAAGCACCAGTTGATTCCC 58.090 50.000 0.00 0.00 28.74 3.97
2491 2987 5.069516 AGTTCAATTCAAGCACCAGTTGATT 59.930 36.000 0.00 0.00 33.95 2.57
2530 3030 4.323477 CCGGCCTTTGGTGTCGGA 62.323 66.667 0.00 0.00 42.94 4.55
2578 3078 6.037062 CGTTACAATCTGGATCTTTGCATGTA 59.963 38.462 0.00 0.00 0.00 2.29
2630 3130 7.745620 AACCTCACCAAACATTTCTTAGTAG 57.254 36.000 0.00 0.00 0.00 2.57
2716 3229 6.860080 ACAGATCAATCAATCAATCACCAAC 58.140 36.000 0.00 0.00 0.00 3.77
2750 3267 5.699001 TGTTCGTCATATGCACTTTTACACT 59.301 36.000 0.00 0.00 0.00 3.55
2810 3330 7.195374 TCAAACACCTTTATATAGCAGGAGT 57.805 36.000 14.32 10.60 33.39 3.85
2966 3492 5.010617 ACCAATCACCAAAAAGTAAAGCGAT 59.989 36.000 0.00 0.00 0.00 4.58
2976 3502 3.070734 CCACCATCACCAATCACCAAAAA 59.929 43.478 0.00 0.00 0.00 1.94
2998 3524 0.665369 CACGTACGGGACCAACACTC 60.665 60.000 21.06 0.00 0.00 3.51
2999 3525 1.364901 CACGTACGGGACCAACACT 59.635 57.895 21.06 0.00 0.00 3.55
3036 3562 1.083080 CAAATTGACGCACGCACGA 60.083 52.632 4.54 0.00 36.70 4.35
3037 3563 2.074353 CCAAATTGACGCACGCACG 61.074 57.895 0.00 0.00 39.50 5.34
3038 3564 0.996727 GACCAAATTGACGCACGCAC 60.997 55.000 0.00 0.00 0.00 5.34
3039 3565 1.281353 GACCAAATTGACGCACGCA 59.719 52.632 0.00 0.00 0.00 5.24
3146 3676 1.448985 TTCACTGTGATTAAGCCGGC 58.551 50.000 21.89 21.89 0.00 6.13
3195 3738 7.041848 GCACCTTCTAACAAAATTCAAAAGCAT 60.042 33.333 0.00 0.00 0.00 3.79
3262 3806 5.934781 AGTCTTTTCCTGTTGAGTGAGATT 58.065 37.500 0.00 0.00 0.00 2.40
3265 3809 4.954875 AGAGTCTTTTCCTGTTGAGTGAG 58.045 43.478 0.00 0.00 0.00 3.51
3266 3810 4.499865 CGAGAGTCTTTTCCTGTTGAGTGA 60.500 45.833 0.00 0.00 0.00 3.41
3267 3811 3.738282 CGAGAGTCTTTTCCTGTTGAGTG 59.262 47.826 0.00 0.00 0.00 3.51
3268 3812 3.800604 GCGAGAGTCTTTTCCTGTTGAGT 60.801 47.826 0.00 0.00 0.00 3.41
3269 3813 2.734079 GCGAGAGTCTTTTCCTGTTGAG 59.266 50.000 0.00 0.00 0.00 3.02
3270 3814 2.365617 AGCGAGAGTCTTTTCCTGTTGA 59.634 45.455 0.00 0.00 0.00 3.18
3271 3815 2.734079 GAGCGAGAGTCTTTTCCTGTTG 59.266 50.000 0.00 0.00 0.00 3.33
3272 3816 2.608261 CGAGCGAGAGTCTTTTCCTGTT 60.608 50.000 0.00 0.00 0.00 3.16
3273 3817 1.068194 CGAGCGAGAGTCTTTTCCTGT 60.068 52.381 0.00 0.00 0.00 4.00
3274 3818 1.623359 CGAGCGAGAGTCTTTTCCTG 58.377 55.000 0.00 0.00 0.00 3.86
3275 3819 0.109039 GCGAGCGAGAGTCTTTTCCT 60.109 55.000 0.00 0.00 0.00 3.36
3276 3820 1.406970 CGCGAGCGAGAGTCTTTTCC 61.407 60.000 12.58 0.00 42.83 3.13
3277 3821 0.729816 ACGCGAGCGAGAGTCTTTTC 60.730 55.000 24.72 0.00 42.83 2.29
3278 3822 0.729816 GACGCGAGCGAGAGTCTTTT 60.730 55.000 24.72 0.00 42.83 2.27
3279 3823 1.154188 GACGCGAGCGAGAGTCTTT 60.154 57.895 24.72 0.00 42.83 2.52
3280 3824 2.481464 GACGCGAGCGAGAGTCTT 59.519 61.111 24.72 0.00 42.83 3.01
3281 3825 3.855589 CGACGCGAGCGAGAGTCT 61.856 66.667 24.72 0.00 42.83 3.24
3300 3844 3.465403 CTGAGTCGCCCCCTGGAG 61.465 72.222 0.00 0.00 0.00 3.86
3335 3879 4.467107 AGGAGGGAGGTCGAGGGC 62.467 72.222 0.00 0.00 0.00 5.19
3336 3880 2.123640 GAGGAGGGAGGTCGAGGG 60.124 72.222 0.00 0.00 0.00 4.30
3337 3881 2.123640 GGAGGAGGGAGGTCGAGG 60.124 72.222 0.00 0.00 0.00 4.63
3338 3882 2.123640 GGGAGGAGGGAGGTCGAG 60.124 72.222 0.00 0.00 0.00 4.04
3339 3883 3.752167 GGGGAGGAGGGAGGTCGA 61.752 72.222 0.00 0.00 0.00 4.20
3340 3884 3.318922 AAGGGGAGGAGGGAGGTCG 62.319 68.421 0.00 0.00 0.00 4.79
3341 3885 1.383386 GAAGGGGAGGAGGGAGGTC 60.383 68.421 0.00 0.00 0.00 3.85
3342 3886 1.465189 AAGAAGGGGAGGAGGGAGGT 61.465 60.000 0.00 0.00 0.00 3.85
3343 3887 0.692756 GAAGAAGGGGAGGAGGGAGG 60.693 65.000 0.00 0.00 0.00 4.30
3344 3888 0.692756 GGAAGAAGGGGAGGAGGGAG 60.693 65.000 0.00 0.00 0.00 4.30
3345 3889 1.162951 AGGAAGAAGGGGAGGAGGGA 61.163 60.000 0.00 0.00 0.00 4.20
3346 3890 0.692756 GAGGAAGAAGGGGAGGAGGG 60.693 65.000 0.00 0.00 0.00 4.30
3347 3891 1.045911 CGAGGAAGAAGGGGAGGAGG 61.046 65.000 0.00 0.00 0.00 4.30
3348 3892 1.681486 GCGAGGAAGAAGGGGAGGAG 61.681 65.000 0.00 0.00 0.00 3.69
3349 3893 1.686110 GCGAGGAAGAAGGGGAGGA 60.686 63.158 0.00 0.00 0.00 3.71
3350 3894 2.736826 GGCGAGGAAGAAGGGGAGG 61.737 68.421 0.00 0.00 0.00 4.30
3351 3895 2.904131 GGCGAGGAAGAAGGGGAG 59.096 66.667 0.00 0.00 0.00 4.30
3352 3896 3.075005 CGGCGAGGAAGAAGGGGA 61.075 66.667 0.00 0.00 0.00 4.81
3353 3897 4.840005 GCGGCGAGGAAGAAGGGG 62.840 72.222 12.98 0.00 0.00 4.79
3354 3898 4.840005 GGCGGCGAGGAAGAAGGG 62.840 72.222 12.98 0.00 0.00 3.95
3355 3899 4.082523 TGGCGGCGAGGAAGAAGG 62.083 66.667 12.98 0.00 0.00 3.46
3356 3900 2.815647 GTGGCGGCGAGGAAGAAG 60.816 66.667 12.98 0.00 0.00 2.85
3357 3901 4.388499 GGTGGCGGCGAGGAAGAA 62.388 66.667 12.98 0.00 0.00 2.52
3363 3907 4.735132 TTCTTCGGTGGCGGCGAG 62.735 66.667 12.98 0.00 0.00 5.03
3364 3908 4.735132 CTTCTTCGGTGGCGGCGA 62.735 66.667 12.98 0.00 0.00 5.54
3366 3910 4.699522 ACCTTCTTCGGTGGCGGC 62.700 66.667 0.00 0.00 35.52 6.53
3367 3911 2.434359 GACCTTCTTCGGTGGCGG 60.434 66.667 0.00 0.00 37.42 6.13
3368 3912 2.809601 CGACCTTCTTCGGTGGCG 60.810 66.667 0.00 0.00 37.42 5.69
3374 3918 2.881352 GCTCGCCGACCTTCTTCG 60.881 66.667 0.00 0.00 38.80 3.79
3375 3919 2.881352 CGCTCGCCGACCTTCTTC 60.881 66.667 0.00 0.00 40.02 2.87
3376 3920 3.371063 TCGCTCGCCGACCTTCTT 61.371 61.111 0.00 0.00 41.89 2.52
3418 3962 2.438614 GAAAGGAGGAAGGCCCGC 60.439 66.667 0.00 0.00 40.87 6.13
3419 3963 0.393132 GAAGAAAGGAGGAAGGCCCG 60.393 60.000 0.00 0.00 40.87 6.13
3420 3964 0.698818 TGAAGAAAGGAGGAAGGCCC 59.301 55.000 0.00 0.00 33.31 5.80
3421 3965 1.340502 CCTGAAGAAAGGAGGAAGGCC 60.341 57.143 0.00 0.00 40.02 5.19
3422 3966 1.630878 TCCTGAAGAAAGGAGGAAGGC 59.369 52.381 0.00 0.00 41.60 4.35
3429 3973 2.482494 GATCCCCTCCTGAAGAAAGGA 58.518 52.381 0.00 0.00 44.35 3.36
3430 3974 1.492599 GGATCCCCTCCTGAAGAAAGG 59.507 57.143 0.00 0.00 41.29 3.11
3443 3987 0.473501 ATCTCAGCCAGAGGATCCCC 60.474 60.000 8.55 0.00 44.81 4.81
3444 3988 0.686224 CATCTCAGCCAGAGGATCCC 59.314 60.000 8.55 0.00 44.81 3.85
3445 3989 0.035176 GCATCTCAGCCAGAGGATCC 59.965 60.000 2.48 2.48 44.81 3.36
3446 3990 0.757512 TGCATCTCAGCCAGAGGATC 59.242 55.000 4.16 0.00 44.81 3.36
3447 3991 1.348366 GATGCATCTCAGCCAGAGGAT 59.652 52.381 19.70 0.00 44.81 3.24
3448 3992 0.757512 GATGCATCTCAGCCAGAGGA 59.242 55.000 19.70 0.00 44.81 3.71
3449 3993 0.600518 CGATGCATCTCAGCCAGAGG 60.601 60.000 23.73 0.98 44.81 3.69
3450 3994 0.600518 CCGATGCATCTCAGCCAGAG 60.601 60.000 23.73 5.39 46.14 3.35
3451 3995 1.444672 CCGATGCATCTCAGCCAGA 59.555 57.895 23.73 0.00 34.78 3.86
3452 3996 2.252346 GCCGATGCATCTCAGCCAG 61.252 63.158 23.73 6.81 37.47 4.85
3453 3997 2.203112 GCCGATGCATCTCAGCCA 60.203 61.111 23.73 0.00 37.47 4.75
3454 3998 3.344215 CGCCGATGCATCTCAGCC 61.344 66.667 23.73 6.93 37.32 4.85
3455 3999 2.587194 ACGCCGATGCATCTCAGC 60.587 61.111 23.73 20.58 37.32 4.26
3456 4000 1.953138 GGACGCCGATGCATCTCAG 60.953 63.158 23.73 15.89 37.32 3.35
3457 4001 2.106938 GGACGCCGATGCATCTCA 59.893 61.111 23.73 0.00 37.32 3.27
3458 4002 2.663188 GGGACGCCGATGCATCTC 60.663 66.667 23.73 14.16 37.32 2.75
3459 4003 3.157252 AGGGACGCCGATGCATCT 61.157 61.111 23.73 5.46 37.32 2.90
3460 4004 2.969238 CAGGGACGCCGATGCATC 60.969 66.667 17.10 17.10 37.32 3.91
3461 4005 4.552365 CCAGGGACGCCGATGCAT 62.552 66.667 0.00 0.00 37.32 3.96
3469 4013 4.382320 TTGTACGCCCAGGGACGC 62.382 66.667 10.89 1.43 0.00 5.19
3470 4014 2.433664 GTTGTACGCCCAGGGACG 60.434 66.667 10.89 15.30 0.00 4.79
3471 4015 1.024579 CATGTTGTACGCCCAGGGAC 61.025 60.000 10.89 0.00 0.00 4.46
3472 4016 1.298340 CATGTTGTACGCCCAGGGA 59.702 57.895 10.89 0.00 0.00 4.20
3473 4017 1.748879 CCATGTTGTACGCCCAGGG 60.749 63.158 0.00 0.00 0.00 4.45
3474 4018 0.744414 CTCCATGTTGTACGCCCAGG 60.744 60.000 0.00 0.00 0.00 4.45
3475 4019 0.744414 CCTCCATGTTGTACGCCCAG 60.744 60.000 0.00 0.00 0.00 4.45
3476 4020 1.298340 CCTCCATGTTGTACGCCCA 59.702 57.895 0.00 0.00 0.00 5.36
3477 4021 2.112815 GCCTCCATGTTGTACGCCC 61.113 63.158 0.00 0.00 0.00 6.13
3478 4022 2.461110 CGCCTCCATGTTGTACGCC 61.461 63.158 0.00 0.00 0.00 5.68
3479 4023 2.461110 CCGCCTCCATGTTGTACGC 61.461 63.158 0.00 0.00 0.00 4.42
3480 4024 0.806102 CTCCGCCTCCATGTTGTACG 60.806 60.000 0.00 0.00 0.00 3.67
3481 4025 0.249398 ACTCCGCCTCCATGTTGTAC 59.751 55.000 0.00 0.00 0.00 2.90
3482 4026 0.981183 AACTCCGCCTCCATGTTGTA 59.019 50.000 0.00 0.00 0.00 2.41
3483 4027 0.606401 CAACTCCGCCTCCATGTTGT 60.606 55.000 0.00 0.00 34.91 3.32
3484 4028 1.308069 CCAACTCCGCCTCCATGTTG 61.308 60.000 0.00 0.00 38.08 3.33
3485 4029 1.002134 CCAACTCCGCCTCCATGTT 60.002 57.895 0.00 0.00 0.00 2.71
3486 4030 2.671070 CCAACTCCGCCTCCATGT 59.329 61.111 0.00 0.00 0.00 3.21
3487 4031 2.825836 GCCAACTCCGCCTCCATG 60.826 66.667 0.00 0.00 0.00 3.66
3488 4032 4.473520 CGCCAACTCCGCCTCCAT 62.474 66.667 0.00 0.00 0.00 3.41



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.