>input_sequence_49509
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-------------------------------------------------------------------ATGTCGAAGCGGC
CGGGCGGGACGAAGAAGAGGCTGAAGCGCGGCCTCTGGTCGCCGGAGGAGGACGAGAAGCTCATGAACCACATTGCCAAG
TACGGCAACGGCTGCTGGAGCTCCATCCCCAAGATTGCAGGTACCGTACCAACCTAGTTC-----------------ACT
GCTACACTAGCTAGCTTGCCCCCTCCTTGATCCGCCAATGCAGCAGTAGCTTTCTCGTCAGTTAT----GCTAGTGCCAC
TGTGACATTTCCTATCTAAATTAGAGATGGTTTCCTTTTATGCGACGCAATTAAGTGACAATGTTGTGTGAAGACACTGA
TTAGCAAATTACTCA-----TCAATTTTGA---AGTGCCAATTTGATGGAATTAATCGGTTTTG-----ATTTGTTGCTG
CATTATTAGGCCTTGAGAGGTGCGGGAAGAGCTGCAGGCTGAGGTGGATAAACTACCTGAGGCCGGACCTCAAGAGGGGC
GCCTTCTCGCAGGAGGAGGAGGACCTCATCATCCACCTCCATTCCATCCTCGGCAACAAGTGGTCTCAGATCGCCGCGCA
GCTGCCGGGGCGCACCGACAACGAAGTCAAGAACTTCTGGAACTCCTTCATCAAGAAGAAGCTCCGCCAGCGCGGCATCG
ACCCGGCCACC------CACAAGCCGCTCGCCCCCGCCAGCCAGTGGCGTATCTAGGGGGTGGACAGGGTGGTCCATGGA
CCACCCTGGAATTTCCCCATAATCTATATAGCATAGAGAAAAATATATTTTTATAATAAATAAATATATTTATGTGAATA
TTTTGCATTTGTGGACCACCATGGCATGTTGGGCTAGCTACGCCACTGCCGCCAGCGCTCCCCCCGCCGCCACGCCTGTC
AGCCGCAGCGCCGTGTTCAGCGAGGCCGAGCTGATACTGTCGTCGCCCGTGGGGGGACAGCACATGCCGCCGCTGGTGTC
GGCGGAGAGCTACGTGTACAGCC-GGGGCAGCATGGACGGCGCCGGCGG---------CGTGGTGGGCGGGTGCAGTGAC
GACGTGTCCCTGTCGTCGCTGTCGGGGTACAACAACAACAACCAGACGGCGGACTTCGCCGGGTACCTCGACGCGGACGC
GCTGCACGGCGGGGTTATCCCGTCGGTGTCGAGCTCCAGCACGCTGAACTCGATGGCCGGGGTGAGCCCCGGCGGCGCGG
CCAACACCAACGCCACCACGGACGAGCTGTGCTGCA---AC------------AACA---ACCCGAGCAACAGCGGCAGC
GGGTTCGAGTCGTCCACGACGCAGAGCAGCAGCAACCACCACCTGCCGTGGCTGGAGCTGGGGTCGATCAGCAGCTGCAC
CGAGGACGCCAGCGGCGCCGGCGCCGGCGCCGACCACTACGGCGCGGCGCTGGATGAGCTCAAGTGGTCCGACTACGTGT
TCGACGGCGGCTACCAGCAGTACCACCAGCAGGGCCAGTGCATCTACGGCGACAGCAAGGCCGCCGCCGACGCAGCGGCG
GCGCAGTTCGACGCGCACGGGCTGGGAATCAACTGGTGCTTGAATTGA--------------------------------
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--------------------------------------------------------
>chr2B_1_TraesCS2B01G177900
TATATGGACAAGAGCTGAAGGGGTTATGTACGTAACTGTTGAATGACCGACAGAAATATATCCATCATTCAGTAGTAGTA
TCAATTTGACACTGTCAATAAATGTTTGCCATATCC---TCTACATGCATGAATAACCAAACATAAAAATGTTTACTTGA
TTGAGACATTGCTTTAAAGTGACACGTACCCTACATTGACAGGAATTGAAGGGCCGGGGCTACGTACGTAACTGT--TGG
TTCATATGCGTGGTGGAGATGCAA---ATTACATAAGAGG----CGACATGACAT--ATGTTTGTTGCCGTGCTAGCTGC
TCAATTGCTTGCGTTCCGGATAACTTGTTGCAGCATCAAGAAGTGATGTTAACGCAAAGTGAGCGTCATCCAAAGCCCCA
CAGGGCCG----GCTAGGGTTC-----------ATGCAATGCATGCAGCATCT----GTATG------GTGGTAGTGGAG
GATGCAAAGGTGTCAAGGTGAAAAATGATTA-AGCGGGGGAAAGGCGCGGAAAAGCAGGGG-GACACAAAAGAGTCAACC
AGCCCTACCG---CAGCTGGGTGGACAGTTACGAGACCTAATCTCTTTGTCTAATCAGCCCACACACACACGA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CGCACGGGCCAAAGATTTCACGACCAAC-----------------------------CTATCTGCCCCGACGGATGGGC
AAAGGCGGATTCACTGG------------AGCTGAAAAGATGAGAGAGTA------------------------------
--------------CGCCGGCGGTAGTACTGACACTGGCTAGCTCCCTCC------CTGTGTGTGTACTGTCTACACT--
-GGCTATAGCTAGCAAGAGCGAGGCAAGCGCTACGCTGGCACCTAC--CTGAGAGCGACCCCCCGCCTTCCGCCCTGAGG
CCCCTTTTATACT----CTGCCCTCGCTTTGTCTTCCC-TCCATCG----------------------------------
CTCCGTCGGTCGTTTCTTCCTCTGCCATTGCCGCCATCGTCGGCCGCCGCCTACTGCTCGCCACGGCCGGCTAGCAGAGC
TGCACGGGCGGCAACGCCACTGAGCTTTGGTTCACGTCGTCTCAGTCCGTCTCAGTCCGTCGGCGGCATGTCGAAGCGGC
CGGGCGGGACGAAGAAGAGGCTGAAGCGCGGCCTCTGGTCGCCGGAGGAGGACGAGAAGCTCATGAACCACATTGCCAAG
TACGGCAACGGCTGCTGGAGCTCCATCCCCAAGATTGCAGGTACCGTACCAACCTAGTTC-----------------ACT
GCTACACTAGCTAGCTTGCCCCCTCCTTGATCCGCCAATGCAGCAGTAGCTTTCTCGTCAGTTAT----GCTAGTGCCAC
TGTGACATTTCCTATCTAAATTAGAGATGGTTTCCTTTTATGCGACGCAATTAAGTGACAATGTTGTGTGAAGACACTGA
TTAGCAAATTACTCA-----TCAATTTTGA---AGTGCCAATTTGATGGAATTAATCGGTTTTG-----ATTTGTTGCTG
CATTATTAGGCCTTGAGAGGTGCGGGAAGAGCTGCAGGCTGAGGTGGATAAACTACCTGAGGCCGGACCTCAAGAGGGGC
GCCTTCTCGCAGGAGGAGGAGGACCTCATCATCCACCTCCATTCCATCCTCGGCAACAAGTGGTCTCAGATCGCCGCGCA
GCTGCCGGGGCGCACCGACAACGAAGTCAAGAACTTCTGGAACTCCTTCATCAAGAAGAAGCTCCGCCAGCGCGGCATCG
ACCCGGCCACC------CACAAGCCGCTCGCCCCCGCCAGCCAGTGGCGTATCTAGGGGGTGGACAGGGTGGTCCATGGA
CCACCCTGGAATTTCCCCATAATCTATATAGCATAGAGAAAAATATATTTTTATAATAAATAAATATATTTATGTGAATA
TTTTGCATTTGTGGACCACCATGGCATGTTGGGCTAGCTACGCCACTGCCGCCAGCGCTCCCCCCGCCGCCACGCCTGTC
AGCCGCAGCGCCGTGTTCAGCGAGGCCGAGCTGATACTGTCGTCGCCCGTGGGGGGACAGCACATGCCGCCGCTGGTGTC
GGCGGAGAGCTACGTGTACAGCC-GGGGCAGCATGGACGGCGCCGGCGG---------CGTGGTGGGCGGGTGCAGTGAC
GACGTGTCCCTGTCGTCGCTGTCGGGGTACAACAACAACAACCAGACGGCGGACTTCGCCGGGTACCTCGACGCGGACGC
GCTGCACGGCGGGGTTATCCCGTCGGTGTCGAGCTCCAGCACGCTGAACTCGATGGCCGGGGTGAGCCCCGGCGGCGCGG
CCAACACCAACGCCACCACGGACGAGCTGTGCTGCA---AC------------AACA---ACCCGAGCAACAGCGGCAGC
GGGTTCGAGTCGTCCACGACGCAGAGCAGCAGCAACCACCACCTGCCGTGGCTGGAGCTGGGGTCGATCAGCAGCTGCAC
CGAGGACGCCAGCGGCGCCGGCGCCGGCGCCGACCACTACGGCGCGGCGCTGGATGAGCTCAAGTGGTCCGACTACGTGT
TCGACGGCGGCTACCAGCAGTACCACCAGCAGGGCCAGTGCATCTACGGCGACAGCAAGGCCGCCGCCGACGCAGCGGCG
GCGCAGTTCGACGCGCACGGGCTGGGAATCAACTGGTGCTTGAATTGAACTCAT----CCAACCGACAGTCCGACACCAA
AGGCCGGCGGCCAGCAATCAGCCGCTGCTGCCGCCACTACATGCAAAGATCCAGATTGTAACGTATACGCGAGTTTATAA
TACTCCTAGC-----TACTAAGAAATGTTTGGTGAGGTTTTGGCTTGTAAATTGTTTCTCCCTTACGTTCTCTCTTGTTT
CTTTCTTTCT----TTC----ATCTTGAGTTGG----TGATTGATTGATTGATCTGTATAACTTTGAGTGTAAAAGTGCA
TATGACGAACACAGAAGGATCGACG---GAGGGATACATATATTACTTTACTCCTGCT-ATATAAAGGTGTTTGATTTTT
GCGTGGTTAATTAAATAAAGA-----GTGTGGTGTGGTGTGGTGATGATTAATCAATCACAGGCAGCTTCGGCGGACGGC
TGGCTTTATCATGGGGTCCGCCGGGCCATTGAATTCGTCCTCGATCGATCGATCGCTTTACTTTTTGGTGATTGGTGATG
GTGGAGTGTTGGTCCCGTACGTGGCTGGATCGTTCGTTCGTTCGTGCGTGCGTCAATTTGGTCATGATGATGATTGAGCT
GTAAGGAGAGAGG----ACGTACTTTATACTGTGCAAGCTCTTGTCCTGGAGTGTAATTAGCACATGGACGATGGGCCGG
CTTAATCACAG-------------TGAAATGAAGTTTGAAAAACGAAAAACATCATTATGCTTTTGAA-TTTTGTTAGAA
GGTGCAGCTTTCATGGCATTTAGCTGCCTAGGTAGGTTGATTTTGAATCTCACTCAACAGGAAAAGACTCTCGCTCGCGT
CGCCTCCAGGGGGCGACTCAGGCGCCCCAACCGCCGCCGCCCTCGACCTCCCTCCTCCCCTTCTTCCTCGCCGCCACCGA
AGAAGGTCGGCGAGCGAAGCTCGCCTGGCGGACGGCGGACGGCGGGCCTTCCTCCTTTCTTCAGGAGGGGATCCTCTGGC
TGAGATGCATCGGCGTCCCTGGGCGTACAACATGGAGGCGGAGTTGGCGCGCTCGG
>chr2A_1
TATATTGAGAGGAGTTGAAGGGGTTATGTACGTAACTGTTGAATGACCGACAGAAATGTATCATTC-------AGTATTA
TCAGTTTGACACTGTCAATAAATGTTTGTGATTCCTTTTTCTACATGCCTGAATAACCAAACTTAAAAATGTTTACTTGA
TAGAGACATTACTCAAAAGTGACACGTACCCTATATTGACAGGAATTGAAGG-----GGCTACGTACGTAACTGT--TGG
TTCATATGCGTGGTGGAGAATAGATGCATTACACGAGAGAGGATCGATCGACATGACATGTCTGTTGCCGT----GCTGC
TCAATTGCTTGCGTTCCAGACAACTTG---CAGCCTCAAGAAGTGATCCTAACGCAAAGTGAGCGTCATCCAAAGCCCCA
CGGGG--------------------TGCATGCAATGCAATGCATGCAGCATCT----GTGTGGGTGGTGTGGTAGTGGAG
GATGCAAAGGTGTCAAGGTGAAAAATGATTA-AGCGGGGGAAAGGCGCGGAAAAGCAGGGGGGACACAAAAGAGTCAACC
AGCCCTACCG---CAGCTGGGTGGACAGTTACGAGACCTAATCTCTTTGTCTAATCAGCCCACACGCACACGACGCACAC
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--ACACGGGCAAAAGATTTCACGACCAAC-----------------------------CTATCTGCCCCGACGGATGGGC
AAAGGCGGGTTCACTGG------------AGCTGAAAAGATGAGAGAGTA------------------------------
--------------CGCCGGCAGCAGTACTGACACTGGCTAGCTAGCTCC------GTGTGTGTGTACTCTCTACACTCT
GGGCTGTAGCTAGCAGGAGCGAGGCAAGCGCTACGTTGGCACCTAC--CTGAGAGCGACCCCCCGCCTTCCGCCCCGAGG
CCCCTTTTATACT----CTGCCCTCGCTTTGTCTTCCC-TCCATCG----------------------------------
CTCCGTCGGTCGTTCCCTCCTCTGCCATTGCCGCCATCGTCGGCCGCCGCCTTCTGCTCGCCACGGCCGGCTAGCAAAGC
TGCACGGGCGGCAAAGAAACTGAGCTTCGGTTTGCGT----------CGTCTCAGTCAGTCGGCGGCATGTCGAAGCGGC
CCGGCGGGACGAAGAAGAGGCTCAAGCGCGGCCTCTGGTCGCCGGAGGAGGACGAGAAGCTCATGAACCACATTGCCAAG
TACGGCAACGGCTGCTGGAGCTCCGTCCCCAAGATTGCAGGTACCGTACCAGCCTATAGCCACATCCCTAGTTCACTACT
ACTGCACTAGCT--CTTGCCCCCTCCTTGATCCGCCAATGCAGCAGTAGCTTTCTGGCCAGTTATGCTAGCTAGTGCCAC
TATAACATTTTCTATCTAAATTAGAGATGGCTTCCTTTTATGTGATGCAATTGATTGGCAATGTTTGTTG---TGTGGAG
------AACTAGTTA-----GCAGTTTTGA---AGTGCTAATTTGATGGGATTAATCGGGTTTTAATTAATTTGCTGCTG
CATTATTAGGCCTTGAGAGGTGCGGGAAGAGCTGCAGGCTGAGGTGGATAAACTACCTGAGGCCGGACCTCAAGAGGGGC
GCCTTCTCGCAGGAGGAGGAGGACCTCATCATCCACCTCCACTCCATCCTCGGCAACAAGTGGTCTCAGATCGCCGCGCA
GCTGCCCGGTCGCACCGACAACGAGGTCAAGAACTTCTGGAACTCCTTCATCAAGAAAAAGCTCCGCCAGCGCGGCATCG
ACCCGGCCACC------CACAAGCCGCTCGCCCCA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GCCGGCGCTGCCGCTGCCGCCACGCCTGTC
AGCCGCTCCGCCGTGTTCAGCGAGGCCGAGCTGATACTGTCGTCCCCCGTGGGAGGACCGCACATGCCGCCGCTGGTGTC
GGCGGAGAGCTACGTGTACAGCC-GGGGCAGCATGGACGGCGCCGGCGG---------CGTGGTGGGCGGGTGCAGCGAC
GATGGGTCACTGTCCTCGCTGTCGGGGTACAACAACAACAACCAGACGGCGGACTTCGCCGGGTACCTGGATGCGGACGC
CCTGCACGGCGCAGTCATCCCGTCGGTGTCGAGCTCCAGCACGCTTAACTCCATGGCCGGCGTGAGCCCCGGCGGCGTGG
CCAACGGCAACGCT---ACGGACGAGCTGTGCTGCA---ACAACAACAACAAGAACA---ACCCGAGCAACAGCGGCAGC
GGGTTCGAGTCGTCGACCACGCAGAGCAGCAGCAACCACCATCTGCCGTGGCTGGAGCTGGGGTCGATCAGCAGCTGCAC
CGAGGACGGCAACGCCGCCGGCGCCGCCGCCGACCACTACGGCGCGGCGCTGGACGAGCTCAAGTGGTCCGACTACGTGT
TCGACGGCGGCTACCCGCAGTACCACCAGCAGGGCCAGTGCATCTACGGCGACAGCAAGGCCGCCGCCGACGCCGCCACG
GCGCAGTTCGACGCGCACGGGCTCGGCATCAACTGGTGCTTGAATTGAACCCAAGTACCCAACCGACAGCCCGACACCAA
CGGCCGGCGGTCGGCAATCAACCGCCGCTGCCGCCACGACATGCAAAGATCCAGATTGTAACGTATACGCGAGTTTATAA
TACTCCTAGTAGCTATACTAAGAAATGTTTGGTGAGGTTTTGGCTTGTAAATTATTTCTCCCTTACGTTCTCTCTTGTTT
CTTTCTTTCTCTCTTTCTTTCATCTTGATTTGGTGATTGATTGATTGATTGATCTGTATAACTTTGCGTGTAAAAGTGCA
TATGACGAACACAGAAGGATCGACGATGGAGGGATACATATATTACTTTGCTCCTGCTTATATAAAGGTGTTTGATTTTT
GCGTGGTTAATTAAATAAAGAGTGTGGTGTGGTGTGGTGTGGTGATGATTAATCAATCACAGGCAGCTTCCGCGGACGTC
TGGCTTTATCAAGGGGTCCGCCGGGCCATTGAATTCGTCCTCGATCGATCGGTCGCTTTACCTTTTGGTGATTGGTGATG
GTGCGGTGTTGGTCCCGTACGTGGCTGGATCGTTCGTTCGT----GCGTGCGTCAATTTGGCCATGATGATGATTGAGCT
GTAAGGGGAGAGGACGTACGTACTTTATACTGTGCAAGCTCTTGTCCTGGAGTGTAATTAGCACATGGACGATGGACCGG
CTTAATCACAGCGTCACGGTTCCATGAAATGAAGTTTGGAGAACGAAAAACATCACTGTGCTTTTGAATTTTTGTTAGAA
GGTGCAGCTTTCATTGCATCTAGCTGCCTAGGTAGGTTGATTTTGTAT--------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>chr2D_177
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TGACACGTACACG-TATTGACAGGAATTGAATG-----GGCTACACACGTAACTGTTGTGG
TTCATATGCCTGGTGGAGAATAGTTGCATTACGTGATAGA----CGATGGACAGGAAATGTTTGCTGCCGT----GCTGC
TCAATTGCGTGCGTTCCAGATAACTTG---CAGCATCAAGAAGTGATGTTAACGCAAAGTGAGCGTCATCCGAAGTCCCA
CGGGGCCGGTTTGCTAGGGTGC-----------ATGCAATGCATGCAGCATCT----GTGTGG------TGGTAGTGGAG
GATGCAAAGGTGTCAAGGTGAAAAATGATTGAGGAGA-GGAAAGGCGCGGAAAAGCAGGGG-GACACAAAAGAGTCAACC
AGCCCTACCG---CAGCTGGGTGGACAGTTACGAGACCTAATCTCTTTGTCTAATCAGCCCACACACACACGA-------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-CACACGGGCCAAAGATAAAAGAT-----------------------TTCACGACCAACTATCTGCTCCGACGGATGGGC
AAAGGCGGATTCACTGG------------AGCTGAAAAGATGAGAGAGTA------------------------------
--------------CACCGGCAGCAGTACTGACACTGGCTAGCTCTCTCTCTCTGTGTGTGTGTGTACTGTCTACAAT--
-GGCTA------GCAAGAGCGAGGCAAGCGCTACGTTGGCACCTAC--CTGAGAGCGACCCCCCGCCTTCCGCCTTGAGG
CCCCTTTTATACT----CTGGCCTCGCTTTGTCTTCCC-TCCATCG----------------------------------
CTCCGTCGGTCGTTTCTTCCTCTGCCATTGCCGCCACCGTCGGCCGCCGCCTTCTGCTCGCCACGGCCGGCTAGCAAAGC
TGCACGGGCGGCAACGCCATTGAGCTCTCGTTCGCGT----------CGTCTCAGTCAGTCGGCGGCATGTCGAAGCGGC
CGGGCGGGATGAAGAAGAGGCTGAAGCGCGGCCTCTGGTCGCCGGAGGAGGACGAGAAGCTGATGAACCACATTGCCAAG
TACGGCAACGGCTGCTGGAGCTCCGTCCCCAAGATTGCAGGTACCGTACCAGCCTATAGCCACATCCCTAGCTCACTACT
ACTGCACTAGCT--CTTGCCCCCTCCTTGATCCGCCAATGCAGCAGTAGCTTACTCGCCAGTAATGCTAG----TGCCAC
TACAACATTTTCTGTCTAAATTCGAGATGGTTTC---------------------------------------TGTGGAG
------AACTAGTTA-----ACAATTTTGAAGTAGTGCCAATTTGATGGTGTTAATCGGGTTTTAATTAATTTGTTGCTG
CATTATTAGGCCTTGAGAGATGCGGGAAGAGCTGCAGGCTGAGGTGGATAAACTACCTGAGGCCGGACCTCAAGAGGGGC
GCCTTCTCCCAGGAGGAGGAGGACCTCATCATCCACCTCCACTCCATCCTCGGCAACAAGTGGTCTCAGATCGCCGCGCA
GCTGCCCGGCCGCACCGACAACGAGGTCAAGAACTTCTGGAACTCCTTCATCAAGAAGAAGCTCCGCCAGCGCGGCATCG
ACCCGGCCACC------CACAAGCCGCTCGCCCCC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GCCGGCGCTCCCGCCGCCGCCACGCCTGTC
AGCCGCAGCGCCGTGTTCAGCGAGGCCGAGCTGATACTGTCGTCGCCCGTGGGGGGACCGCACATGCCGCCGCTGGTGTC
GGCGGAGAGCTACGTGTACAGCC-GGGGCAGCATGGACGGCGCCGGCGG---------CGTGGTGGGCGGGTGCAGCGAC
GATGGGTCCCTGTCCTCGCTGTCGGGGT---ACAACAACAACCAGACGGCGGACTTCGCCGGGTACCTGGATGCGGACGC
GCTGCACGGCGGGGTTATCCCGTCGGTGTCGAGCTCCAGCACGCTGAACTCGATGGCCGGCGTGAGCCCCGGCGGCGCGG
CCAACACCAACGCCACCACGGACGAGCTGTGCTGCA---AC------------AACA---ACCCGAGCAACAGCGGCAGC
GGGTTCGAGTCGTCGACGACGCAGAGCAGCAGCAACCACCACCTTCCGTGGCTGGAGCTGGGGTCGATCAGCAGCTGC--
----------------------------GCCGACCACTACGGCGCGGCGCTGGACGAGCTCAAGTGGTCAGACTACGTGT
TCGACGGCGGCTACCCGCAGTACCACCAGCAGGGCCAGTGCATCTACGGCGACAGCAAGGCCGCAGCCGACGCCGCGGCG
GGGCAGTTCGACGCGCACGGGCTCGGCATCAACTGGTGCTTGAATTGAACTCAT----CCAACCGACAGCCCGACACCAA
CGGCCGGCGGCCGGCAATCAACCGCTGCCGCCGCCACGACATGCAAAGATCCAGATCGTAACGTATACGCGAGTTTATAA
TACTCCTAGTAGCTA--CTAAGAAATGTTTGGTGAGGTTTTGGCTTGTAAATCGTTTCTCCCTTACGTTCTCTCTTGTTT
CTTTCTTTCT----TTCTTTCATCTTGATTTGGTGATTGATTGATTGATTGACCCGTATAACTTTGCGTGTAAAAGTGCA
TATGACGAACACAGAAGGATCGATGATGGAGGGATACATATATTACTTTGCTCCTGC-TATATAAAGTTGTTTGATTTTT
GCGTGGTTAATTAAATAAAGA-----GTGTGGTGTGGTGTGGTGATGATCAATCAATCACAGGCAGCTTCGGCGGACGGC
TGGCTTTATCAT-GGGTCCGCCGGGCCATTGAATTCGTCCTCGATCGATCGGTCGCTTTACCTTTTGGTGATTGGTGATG
GTGCGGTGTTGGTCCCGTACGTGGCTGGATCGTTCGTTCGT----GCGTGCGTCAATTTGGTCATGATGATGATTGAGCT
GTAAGGAGAGAGG----ACGTACTTTATACTGTGCAAGCTCTTGTCCTGGAGTGTAATTAGCACATGGACGATGGACCGG
CTTAATCACCGGGTCACGGTTCCATGAAATGAAGTTTGGA-AACGAAAAGCATCACTGTGCTTTTGAA-TTTTGTTAGAA
GGTGCAGCTTTCATATCATCTAGCTGCCTAGGTAGGTTGATTTTGTAT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>chr2B_214
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------GGGCTACGTACGTTACTGTTGTGG
TTCATATGCGTGGTGGAGAATAGTTGCATTACATGAGCGA----CGATGGACATGACATGTTTGTTGCCGTGCTAGCTGC
TCAATTGCCTGCGTTCCAGATAACTTGTTGCAGCATCAAGAAGTGATGTTAACGCAAAGTGAGCGTCATCCAAAGCCCCA
CAGGGCCG----GCTAGGGTGC-----------ATGCAACGCATGCAGCATCT----GTGTGG------TGGTAGTGGAG
GATGCAAAGGTGTCAAGGTGAAAAATGATTA-AGCAAGGGAAAGGCGCGGAAAAGCAGGGG-GGCAGAAAAGAGTCAACC
AGCCCTACCAGCACAGCTGGGTGGACAGTTACGAGACCTAATCTCTTTGTCTAATCAGCAGCGCAC------A-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CACACGGGCCATAGATTTAGCAGTACGTACGTACCACATGGCATGATTCACGACCAGCAGCCTTGC---TCGGATGAGC
AAAAGGCAGACTTACTAGAAGCGATCCATAGCTGAAAAGACGAGAGAGTA------------------------------
--------------CACATC-------ACTGACACTAGC--------------------TGTGTGTACTCTCTACGAC--
------TAGCTAGCAGTA-----GCAAGCGCTACGTTGGCACCTACTCCTGAGAGGGACCTCGCGCCTTCCGCCTTGAGG
CCCCTTTTATACT----CTGGCCTCGCTTTGTCTTCCCCTCCATCG----------------------------------
CTCCGTCGGTCGTTTCTTCCTCTGTCATTGCCGCAAT-----------------------CGACGGCCGGCTAGCAAAGC
TGCACGGCCGGCAACGCCATTGAGCTTGAGTCTGCGT----------CATC----TCAGTTGGCGGCATGTCGAAGTGGC
CGGGAGCGACGAAGAAGAGGCTGAAGCGCGGCCTCTGGTCGCCGGAGGAGGACGAGAAGCTCATGAACCACGTTGCCCAG
TACGGCTACGGCTGCTGGAGCTCTGTCGCCAAGATTGCAGGTACCGTACCAACCTATAGCCGCATCCCTAGTTCACTACG
GCCACACTAGCTATCCTGCCCCCTCCTTGATCCGCCAATGCAGCAGTAGCTTTCTCGTCAGTTAT----GCTAGTGCCAC
TATAACATTTTCTATCTGAATTAGAGATGGTTTCCTTTTATGTGATGCAACTGATTGACAATGTTTTTTG---TGTGGAG
------AACTGGTTA-----ACAGTTTTTA---TCTGCCAATTCGATGGAACTAATCGGGTTTTATTTATTTTGTTGCTG
CATTATTAGGCCTTGAGAGGTGCGGGAAGAGCTGCAGGCTGAGGTGGATGAACTACCTGACGACGGGCCGAG---GGGGC
GCCTTCTCGCAGGAGGAGGAGGACTTCATCATCCACCTCCACTCCATCCGCGGCAACAAGTGGTCTCAGATCGCCGCGCA
CCTGCCCGGGCGCACGGACAATGAGGTCAAGAACTTCTGGAATTCCTTCATCAAGAAGAAGCTCCGCCAGCGCGGCATCG
ACCCGGCCACACACGAACACAAGCCTCTCGACCCC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GCCGCCCCTGCCGCCCCCGCCACGCCCGTC
AGCCGCAACGCCGTGTTCAGCGAGAATGAGCTGATACTGTCGTCGCCCGTGGGGGGACCGCACATGCCGCCGCTGGTGTC
GGCGGAGAGCTACGTGTACAGTCGGGGGCAGCACGGACGGCGCCGGCGGTGCGCACGCCGCGGTCGGCGGGTGCAGCGAT
GATGGGTCCCTGTCGTCGCTGTCGGGGT---ACAACAACAACCAGACGGCGGACTTCGCCGGCTACCTGGACGCGGACGC
GCTGCACGGTGGTGTTATCCCGTCGG------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------
>chr2A_334
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TTGCAGCACCAAGAAGTGATCCTAGCGCAAAATGAGTGCCATCCAAAGTCCCA
CGGGGCCG----GCTAGGGCTAGGGTGCATGCAATGCAATGCATGCAGCATCTATCTGTGTGG------TGGTAGTGGAG
GATGCAAAGGTGTCAAGGTGAAAAACGATTAAAGCGAGGGAAAGATGCGGAAAAGCACT---------------------
---------G---CAGCTGGGTGGACAGTTACGAGACCAAATCTCTTTGTCTAATCAGCCCACACACACGACTAAGGTTT
TAAATTTCGAACCTTATCAAAATATGCAAAATTTCGGAAAATTGGTATATTTCGGACATTACTTCGGATTTTGAGATTTT
AAATTTTACTTAATTTTAATGAATTTTAACATAATTTAAATTTATTTTGAAATCAGTTTAAATCTGCTTTGAAATTTTGG
CTTTAAAAATATTTTAGACCCTACTGAAATATGCGAAATTTCAGAGATTTCACTGAAATTTCGTTGCAATTTTCAACCCT
GCACTCGGGCCAAAGATTTCACGACCAAC-----------------------------GTATCTGCTCCGTCGGATGCGC
AAAGGTGGATTCACTAG------------CGCTGAAAAGATGAGAGAGTATCCCCGCAAAAAAAAAAAAAAAGAAAAAAA
AAGATGACAGCGTACGCCGGCAGTAGTCT---------------------------------------------------
-------------CAAGGGCGAGGCAAGCGCTACGCCA-----------TGAGAGCGACCTCCCACCTTCCGCCTTGTGG
CCCCTTTTATGCTCTGGCTGGCCTCGCTTTGTCTTCCC-TATATCACTCCGTCGGTCGTTCCTTCGTCTGTCATTACCGC
CTCCGTCGGTCGTTCCTTCCTCTGTCATTGCCGCCATCGACGGCCGCCGCCTTCGGCTCGCGACGGCCGGCTAGCAAAGC
TGCACGGCCGGCAACGCCATTGAGCTTGAGTCTGCGT----------CGTCTCAGTCAGTCGGCGGCATGTCGAAGCGGC
CGGGCGCGACCAAGAAGAGGCTGAAGCGCGGCCTCTGGTCGCCGGAGGACGACGAGAAGCTCATGAACCACGTTGCCCAG
TACGGCTACGGCTGCTGGAGCTCTATCGCCAAGATTGCAGGTACCGTACCAACCTATAGCCGCATCCCTAGTTCACTACG
GCCACTCTAGT---------------------------------------------------------------------
------ATTTTATATCTAAATTAGAGACGGTTTCCTTTTATATGATGCAATTAATTGACAATGTTTTTTG---TGTGGAG
------AACTAGTTAGAGTAGCAGTTTTGA---ACGGCCAAATGGATGAAATTAATCGTGTTTTAATCAAT---------
-----TTAGGCCTTGAGAGGTGCGGGAAGAGCTGCAGGCTGAGGTGGATGCACTACCTGACGCCGGACCGAG---GGGGG
CCCTTCTCGCAGGGGGAGGAGGACCTCATCATCCACCTCCACTCCATCCGGGGCAACAAGTGGTCTCAGATCGCCGCGCA
GCTGCCCGGGCGCACCGACAACGAGGTCAAGAACTTCTGGAACACCATCATCAAGAAGAAGCTCCGCCAGCGCCGCATCG
ACCCTGCCATC------CACAAGCCGCTCGCTCAC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GCCGGCGCTGCCGCTGCCGCCACGCCCGTC
ACCCGCACTGCCGTATTCAGCGAGGCCGAGCTGATACTGTCGTCGCCCGTGGGGACGCAGCCCATGCCGCCCCTGGTATC
GGCGGAGAGCTACGTGTACAGCC-GGGGCAGCATGGACGGCGCTGGCGGTGCGCACGCCGCGTTGGGCGGGTGCAGCGAT
GACGGCTCCCTGTCGTCGCTGTCGGGGT---ACAACAACAACCAGAAGGCGGACTTCCCCGGGTACCTGGACGCGGACGC
GCTGCACGGCGCGGTGATCCCGTCGGTGTGGAGCTCCAGAACGCTGAACTGG-TGGCGGGCGTGAGCCCGGGCGGCGCGG
TCAACACCAACGCCACCACGGACGAGCTGTGCTGCA---AC------------AACAACGACCCGGGCAACAGAGGCAGC
GGGTTCGAGTCGTCGACGACGCAGAGCAGCAGCCACCACCACCTGCC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>chr2D_854
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
CTCCGTCGGTCGTTCCTTCCGCTGTCATTGCCGCCATCGACGGCCGCCGCCTTCGGCTCGCGAAGGCCGGCTAGCAAAGC
TGCACGGCCAGCAACGCCATTGAGCTTGAGTCCGCGT----------CGTCTCAGTCAGTCGGCGGCATGTCGAAGCGGC
CGGGCGCGACCAAGAAGAGGCTGAAGCGCGGCCTCTGGTCGCCCGAGGAGGACGAGAAGCTCATGAACCACGTTGCCCAG
TACGGCTACGGCTGCTGGAGCTCTGTCGCCAAGATTGCAGGTACCGTACCAACCTATAGCCGCATCCCTAGTTCACTACG
GCCACTCTAGT---------------------------------------------------------------------
------ATTTTCTATCTAAATTAGAGATGGTTTCCTTTTATATGATGCAATTGATTGACATTGTTTTTTTTTTTGTCGAG
------AACTAGTTAGAGTAGCAGTTTTGA---ACAGCCAAATGGATGGAATTAATCGCGTTTTAATCAAT---------
-----TTAGGCCTTGAGAGGTGCGGGAAGAGCTGCAGGCTGAGGTGGATGCACTACCTGACGCCGGACCGAG---GGGGC
CCCTTCTCGCAGGGGGAGGAGGACCTCATCATCCACCTCCACTCCATCCGCGGCAACAAGTGGTCTCAGATCGCCGCGCA
GCTGCCCGGGCGCACCGACAACGAGGTCAAGAACTTCTGGAACTCCATCATCAAGAAGAAGCTCCGCCAGCGCCGCATCG
ACCCTGCCATC------CACAAGCCGCTCGCTCAC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GCCGGCGCTGCCGCTGCCGCCACGCCCGTC
AGCCGCACCGCCGTATTCAGCGAGGCCGAGCTGATACTGTCGTCGCCCGTGGGGACGCAGCCCATGCCGCCGCTGGTGTC
GGCGGAGAGCTACGTGTACAGCC-GGGGCAGCATGGACGGCGCTGGCGGTGCGCACGCCGCGTTGGGCGGGTGCAGCGAC
GACGGCTCCCTGTCGTCGCTGTCGGGGT---ACAACAACAACCAGACGGCGGACTTCGCCGGGTACCTGGACGCGGACGC
GCTGCACGGCGCGGTGATCCCGTCGGTGTGGAGCTCCAGCACGCTGAACTGGATGGCGGGCGTGAGCCCGGGCGGCGCGG
TCAACACCAACGCCACCACGCACGAGCCGTGCTGCAACAAC------------AACA---ACCCGAGCAACAGGGGCAGC
GGGTTCGAGTCGTCAATGACGCAGAGCAGCAGCAACCACCACCTGCC---------------------------------
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--------------------------------------------------------
>SNPs
-----S--S-S---S------------------------------------------S----SS--SSSSSSS----S--
---S------------------------SS--SS-S------------S-------------S-----------------
-S--------S--SS------------------S------------------SSSS------------------------
-------------------SSSS-----------S----S-------SSSSSSSS-------------------------
-----------------S--------------------------------------------------------------
-----------------------------------------------------------S--------------------
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--S-----------------------------------------------------------------------------
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---------------------S-----------------------S----------S-----------------------
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----------------------------------------------------S-----------------------S---
---------------------------------S---SSSSSSSSSS----------S----------------------
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--------------------------------------------------------SSS---------------------
-------------S------------------------------------------------------------------
-S-S------S-------------------------------S--S--------S----------S-S--SSSSSS-SSS
SSSSSS--S--S-S------S--------------------------------------S---S----------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
------S-----------------S-------------------------------------------------------
-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------S-----------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
----S---------------------------------------------------------------S-----------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------S--S--S-----------S---------------------------S-------------------------
---------------S---------------------------------------------------------S------
-----------------------S--S------------------------------------------S----------
S-----------S-------S----------------S------------------------------------------
---------S----------------------------------------------------------------------
----------------------------S-------------------------------------S-------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S---------S------------------
---SS------------------------------------SSSS-----------------------------------
---------------------------------------------------------------------------S----
--------------------------------------S-S--------------S-S----------------------
--------------S----S-------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1402
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----------------------AGCTTTGGTTCACGTCGTCT--------------------------------------
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>reverse_2262
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---------------------TGGCATGTTGGGCTAGCTAC---------------------------------------
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>forward_1407
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---------------------------TGGTTCACGTCGTCTCAGTC---------------------------------
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>reverse_2855
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------------------------------------------------------TGAGCTCAAGTGGTCCGACT------
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--------------------------------------------------------
>forward_2281
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---------------------TGGCATGTTGGGCTAGCTAC---------------------------------------
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--------------------------------------------------------
>reverse_3989
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--------------------------------------------------------------------GGATCCTCTGGC
TGAGATGC------------------------------------------------
