Multiple sequence alignment - TraesCS2B01G174000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G174000 chr2B 100.000 2718 0 0 1 2718 148142928 148145645 0.000000e+00 5020.0
1 TraesCS2B01G174000 chr2B 77.674 215 31 12 1979 2193 579573201 579573398 6.150000e-22 115.0
2 TraesCS2B01G174000 chr2B 91.045 67 6 0 1 67 14986230 14986164 1.040000e-14 91.6
3 TraesCS2B01G174000 chr2A 89.449 2123 146 22 604 2675 95825292 95827387 0.000000e+00 2608.0
4 TraesCS2B01G174000 chr2A 92.258 155 9 3 452 605 95825041 95825193 1.640000e-52 217.0
5 TraesCS2B01G174000 chr2A 81.176 170 24 6 1979 2140 528661695 528661864 2.200000e-26 130.0
6 TraesCS2B01G174000 chr2A 88.750 80 8 1 871 950 227632606 227632684 2.230000e-16 97.1
7 TraesCS2B01G174000 chr2A 89.610 77 7 1 874 950 715989402 715989477 2.230000e-16 97.1
8 TraesCS2B01G174000 chr2A 85.556 90 11 2 877 965 589690507 589690419 2.880000e-15 93.5
9 TraesCS2B01G174000 chr2A 91.935 62 5 0 91 152 95824964 95825025 1.340000e-13 87.9
10 TraesCS2B01G174000 chr2D 88.832 2167 137 49 607 2718 96799340 96801456 0.000000e+00 2564.0
11 TraesCS2B01G174000 chr2D 77.315 216 31 13 1979 2193 493006072 493006270 7.960000e-21 111.0
12 TraesCS2B01G174000 chr2D 95.385 65 3 0 88 152 96798996 96799060 1.330000e-18 104.0
13 TraesCS2B01G174000 chr2D 92.308 65 5 0 5 69 447365098 447365034 2.880000e-15 93.5
14 TraesCS2B01G174000 chr7D 94.656 262 10 4 151 412 549234853 549235110 1.170000e-108 403.0
15 TraesCS2B01G174000 chr7D 93.893 262 11 5 151 412 85181692 85181948 9.120000e-105 390.0
16 TraesCS2B01G174000 chr7D 84.328 134 19 2 2587 2718 37807545 37807412 2.200000e-26 130.0
17 TraesCS2B01G174000 chr7D 85.556 90 11 2 877 965 10055379 10055467 2.880000e-15 93.5
18 TraesCS2B01G174000 chr7D 90.476 63 6 0 5 67 575484355 575484417 1.730000e-12 84.2
19 TraesCS2B01G174000 chr5D 94.275 262 10 5 151 412 49002622 49002878 1.960000e-106 396.0
20 TraesCS2B01G174000 chr5D 93.015 272 12 7 151 421 225706049 225705784 9.120000e-105 390.0
21 TraesCS2B01G174000 chr5D 92.308 65 5 0 5 69 316748321 316748257 2.880000e-15 93.5
22 TraesCS2B01G174000 chr4D 93.382 272 11 7 151 421 417062357 417062092 1.960000e-106 396.0
23 TraesCS2B01G174000 chr4D 93.015 272 12 7 151 421 245275372 245275107 9.120000e-105 390.0
24 TraesCS2B01G174000 chr4D 83.871 155 16 5 1995 2140 341698668 341698514 3.650000e-29 139.0
25 TraesCS2B01G174000 chr4D 77.714 175 28 8 1981 2146 493836720 493836548 2.230000e-16 97.1
26 TraesCS2B01G174000 chr6D 93.015 272 12 7 151 421 322729617 322729352 9.120000e-105 390.0
27 TraesCS2B01G174000 chr6D 93.893 262 11 5 151 412 322887644 322887900 9.120000e-105 390.0
28 TraesCS2B01G174000 chr6D 81.046 153 20 7 1996 2140 123159217 123159066 2.210000e-21 113.0
29 TraesCS2B01G174000 chr3D 93.893 262 10 5 151 412 98848322 98848577 9.120000e-105 390.0
30 TraesCS2B01G174000 chr3D 85.075 134 18 2 2587 2718 25391581 25391714 4.720000e-28 135.0
31 TraesCS2B01G174000 chr3D 77.333 225 29 17 963 1172 147461876 147461659 2.210000e-21 113.0
32 TraesCS2B01G174000 chr3D 82.540 126 19 2 2557 2680 411007816 411007940 1.030000e-19 108.0
33 TraesCS2B01G174000 chrUn 77.068 266 51 7 2456 2717 11816434 11816693 7.840000e-31 145.0
34 TraesCS2B01G174000 chrUn 77.068 266 51 7 2456 2717 405641569 405641310 7.840000e-31 145.0
35 TraesCS2B01G174000 chrUn 83.505 97 14 2 877 972 55795793 55795698 3.730000e-14 89.8
36 TraesCS2B01G174000 chrUn 86.567 67 9 0 1 67 351519623 351519557 1.040000e-09 75.0
37 TraesCS2B01G174000 chr6A 77.068 266 51 6 2456 2718 3598599 3598341 7.840000e-31 145.0
38 TraesCS2B01G174000 chr6B 79.474 190 32 6 1978 2162 137456408 137456595 7.900000e-26 128.0
39 TraesCS2B01G174000 chr6B 80.645 155 19 9 1996 2140 217169245 217169092 2.860000e-20 110.0
40 TraesCS2B01G174000 chr7A 85.870 92 11 2 875 965 68186964 68186874 2.230000e-16 97.1
41 TraesCS2B01G174000 chr1B 93.651 63 4 0 7 69 11916371 11916433 8.010000e-16 95.3
42 TraesCS2B01G174000 chr1B 86.567 67 9 0 1 67 590636646 590636712 1.040000e-09 75.0
43 TraesCS2B01G174000 chr5A 85.556 90 11 2 877 965 635512479 635512567 2.880000e-15 93.5
44 TraesCS2B01G174000 chr4B 85.556 90 11 2 877 965 432817377 432817289 2.880000e-15 93.5
45 TraesCS2B01G174000 chr3B 77.019 161 34 3 2557 2715 537574818 537574977 3.730000e-14 89.8
46 TraesCS2B01G174000 chr5B 89.231 65 7 0 5 69 13501768 13501704 6.240000e-12 82.4
47 TraesCS2B01G174000 chr4A 88.889 63 7 0 5 67 720773681 720773743 8.070000e-11 78.7
48 TraesCS2B01G174000 chr4A 78.261 115 16 5 2456 2570 734454901 734455006 6.280000e-07 65.8
49 TraesCS2B01G174000 chr1D 76.774 155 25 8 1996 2140 253201897 253201744 2.900000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G174000 chr2B 148142928 148145645 2717 False 5020.000000 5020 100.0000 1 2718 1 chr2B.!!$F1 2717
1 TraesCS2B01G174000 chr2A 95824964 95827387 2423 False 970.966667 2608 91.2140 91 2675 3 chr2A.!!$F4 2584
2 TraesCS2B01G174000 chr2D 96798996 96801456 2460 False 1334.000000 2564 92.1085 88 2718 2 chr2D.!!$F2 2630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
594 597 0.107703 CCACTGCTGAAATAGGGCGA 60.108 55.0 0.0 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1924 2058 0.253327 CTCAACCAACCTCCTAGCCC 59.747 60.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.816074 TGGTCACATTAGTTTCGGGC 58.184 50.000 0.00 0.00 0.00 6.13
29 30 1.092348 GGTCACATTAGTTTCGGGCC 58.908 55.000 0.00 0.00 0.00 5.80
30 31 0.725117 GTCACATTAGTTTCGGGCCG 59.275 55.000 22.51 22.51 0.00 6.13
31 32 0.322322 TCACATTAGTTTCGGGCCGT 59.678 50.000 27.32 9.18 0.00 5.68
32 33 1.549620 TCACATTAGTTTCGGGCCGTA 59.450 47.619 27.32 14.78 0.00 4.02
33 34 2.028294 TCACATTAGTTTCGGGCCGTAA 60.028 45.455 27.32 20.73 0.00 3.18
34 35 2.940410 CACATTAGTTTCGGGCCGTAAT 59.060 45.455 27.32 18.64 0.00 1.89
35 36 3.001939 CACATTAGTTTCGGGCCGTAATC 59.998 47.826 27.32 16.23 0.00 1.75
36 37 1.925229 TTAGTTTCGGGCCGTAATCG 58.075 50.000 27.32 0.00 0.00 3.34
37 38 1.102154 TAGTTTCGGGCCGTAATCGA 58.898 50.000 27.32 10.62 39.71 3.59
38 39 0.247185 AGTTTCGGGCCGTAATCGAA 59.753 50.000 27.32 8.79 40.47 3.71
39 40 0.371301 GTTTCGGGCCGTAATCGAAC 59.629 55.000 27.32 16.67 41.64 3.95
40 41 0.740516 TTTCGGGCCGTAATCGAACC 60.741 55.000 27.32 0.00 41.64 3.62
41 42 2.958016 CGGGCCGTAATCGAACCG 60.958 66.667 19.97 8.01 44.21 4.44
42 43 2.586914 GGGCCGTAATCGAACCGG 60.587 66.667 14.31 14.31 44.46 5.28
43 44 2.586914 GGCCGTAATCGAACCGGG 60.587 66.667 18.52 7.13 41.96 5.73
44 45 2.495866 GCCGTAATCGAACCGGGA 59.504 61.111 18.52 0.00 41.96 5.14
45 46 1.879884 GCCGTAATCGAACCGGGAC 60.880 63.158 18.52 0.00 41.96 4.46
46 47 1.811860 CCGTAATCGAACCGGGACT 59.188 57.895 6.32 0.00 38.09 3.85
47 48 1.024271 CCGTAATCGAACCGGGACTA 58.976 55.000 6.32 0.00 38.09 2.59
48 49 1.405105 CCGTAATCGAACCGGGACTAA 59.595 52.381 6.32 0.00 38.09 2.24
49 50 2.035066 CCGTAATCGAACCGGGACTAAT 59.965 50.000 6.32 0.00 38.09 1.73
50 51 3.047796 CGTAATCGAACCGGGACTAATG 58.952 50.000 6.32 0.00 39.71 1.90
51 52 3.243168 CGTAATCGAACCGGGACTAATGA 60.243 47.826 6.32 0.00 39.71 2.57
52 53 4.558095 CGTAATCGAACCGGGACTAATGAT 60.558 45.833 6.32 0.00 39.71 2.45
53 54 2.882927 TCGAACCGGGACTAATGATG 57.117 50.000 6.32 0.00 0.00 3.07
54 55 1.202486 TCGAACCGGGACTAATGATGC 60.202 52.381 6.32 0.00 0.00 3.91
55 56 1.217882 GAACCGGGACTAATGATGCG 58.782 55.000 6.32 0.00 0.00 4.73
56 57 0.828022 AACCGGGACTAATGATGCGA 59.172 50.000 6.32 0.00 0.00 5.10
57 58 0.828022 ACCGGGACTAATGATGCGAA 59.172 50.000 6.32 0.00 0.00 4.70
58 59 1.217882 CCGGGACTAATGATGCGAAC 58.782 55.000 0.00 0.00 0.00 3.95
59 60 0.852777 CGGGACTAATGATGCGAACG 59.147 55.000 0.00 0.00 0.00 3.95
60 61 1.801395 CGGGACTAATGATGCGAACGT 60.801 52.381 0.00 0.00 0.00 3.99
61 62 2.542205 CGGGACTAATGATGCGAACGTA 60.542 50.000 0.00 0.00 0.00 3.57
62 63 3.450578 GGGACTAATGATGCGAACGTAA 58.549 45.455 0.00 0.00 0.00 3.18
63 64 3.866910 GGGACTAATGATGCGAACGTAAA 59.133 43.478 0.00 0.00 0.00 2.01
64 65 4.025979 GGGACTAATGATGCGAACGTAAAG 60.026 45.833 0.00 0.00 0.00 1.85
65 66 4.565564 GGACTAATGATGCGAACGTAAAGT 59.434 41.667 0.00 0.00 0.00 2.66
66 67 5.276254 GGACTAATGATGCGAACGTAAAGTC 60.276 44.000 0.00 0.00 0.00 3.01
67 68 3.634730 AATGATGCGAACGTAAAGTCG 57.365 42.857 3.06 3.06 0.00 4.18
68 69 2.054687 TGATGCGAACGTAAAGTCGT 57.945 45.000 8.94 0.00 46.19 4.34
69 70 3.200294 TGATGCGAACGTAAAGTCGTA 57.800 42.857 8.94 5.04 43.38 3.43
70 71 3.165890 TGATGCGAACGTAAAGTCGTAG 58.834 45.455 8.94 0.00 43.38 3.51
71 72 2.686558 TGCGAACGTAAAGTCGTAGT 57.313 45.000 8.94 0.00 43.38 2.73
72 73 2.309693 TGCGAACGTAAAGTCGTAGTG 58.690 47.619 8.94 0.00 43.38 2.74
73 74 1.645751 GCGAACGTAAAGTCGTAGTGG 59.354 52.381 8.94 0.00 43.38 4.00
74 75 2.665519 GCGAACGTAAAGTCGTAGTGGA 60.666 50.000 8.94 0.00 43.38 4.02
75 76 3.554524 CGAACGTAAAGTCGTAGTGGAA 58.445 45.455 0.00 0.00 43.38 3.53
76 77 3.601211 CGAACGTAAAGTCGTAGTGGAAG 59.399 47.826 0.00 0.00 43.38 3.46
77 78 4.540824 GAACGTAAAGTCGTAGTGGAAGT 58.459 43.478 0.00 0.00 43.38 3.01
78 79 3.893720 ACGTAAAGTCGTAGTGGAAGTG 58.106 45.455 0.00 0.00 42.35 3.16
79 80 2.660236 CGTAAAGTCGTAGTGGAAGTGC 59.340 50.000 0.00 0.00 0.00 4.40
80 81 2.902705 AAAGTCGTAGTGGAAGTGCA 57.097 45.000 0.00 0.00 0.00 4.57
81 82 3.402628 AAAGTCGTAGTGGAAGTGCAT 57.597 42.857 0.00 0.00 0.00 3.96
82 83 3.402628 AAGTCGTAGTGGAAGTGCATT 57.597 42.857 0.00 0.00 0.00 3.56
83 84 3.402628 AGTCGTAGTGGAAGTGCATTT 57.597 42.857 0.00 0.00 0.00 2.32
84 85 3.326747 AGTCGTAGTGGAAGTGCATTTC 58.673 45.455 13.21 13.21 0.00 2.17
85 86 2.415512 GTCGTAGTGGAAGTGCATTTCC 59.584 50.000 28.94 28.94 45.59 3.13
114 115 3.409026 CAGACTTTCTGCCCTTACACT 57.591 47.619 0.00 0.00 37.72 3.55
152 153 7.042725 GCATGGGTGTTTCTTTTCTTTTAAGAC 60.043 37.037 0.00 0.00 34.13 3.01
153 154 7.712204 TGGGTGTTTCTTTTCTTTTAAGACT 57.288 32.000 0.00 0.00 34.13 3.24
154 155 8.810990 TGGGTGTTTCTTTTCTTTTAAGACTA 57.189 30.769 0.00 0.00 34.13 2.59
155 156 8.899771 TGGGTGTTTCTTTTCTTTTAAGACTAG 58.100 33.333 0.00 0.00 34.13 2.57
156 157 8.900781 GGGTGTTTCTTTTCTTTTAAGACTAGT 58.099 33.333 0.00 0.00 34.13 2.57
169 170 1.254954 GACTAGTTGTCGGACTGGGT 58.745 55.000 9.88 1.71 35.81 4.51
170 171 0.966920 ACTAGTTGTCGGACTGGGTG 59.033 55.000 9.88 0.26 32.95 4.61
171 172 0.246635 CTAGTTGTCGGACTGGGTGG 59.753 60.000 9.88 0.00 0.00 4.61
172 173 0.178955 TAGTTGTCGGACTGGGTGGA 60.179 55.000 9.88 0.00 0.00 4.02
173 174 1.004918 GTTGTCGGACTGGGTGGAG 60.005 63.158 9.88 0.00 0.00 3.86
174 175 2.214216 TTGTCGGACTGGGTGGAGG 61.214 63.158 9.88 0.00 0.00 4.30
175 176 4.083862 GTCGGACTGGGTGGAGGC 62.084 72.222 0.00 0.00 0.00 4.70
176 177 4.631740 TCGGACTGGGTGGAGGCA 62.632 66.667 0.00 0.00 0.00 4.75
177 178 3.402681 CGGACTGGGTGGAGGCAT 61.403 66.667 0.00 0.00 0.00 4.40
178 179 2.273449 GGACTGGGTGGAGGCATG 59.727 66.667 0.00 0.00 0.00 4.06
179 180 2.273449 GACTGGGTGGAGGCATGG 59.727 66.667 0.00 0.00 0.00 3.66
180 181 3.341629 ACTGGGTGGAGGCATGGG 61.342 66.667 0.00 0.00 0.00 4.00
181 182 3.016971 CTGGGTGGAGGCATGGGA 61.017 66.667 0.00 0.00 0.00 4.37
182 183 2.534011 TGGGTGGAGGCATGGGAA 60.534 61.111 0.00 0.00 0.00 3.97
183 184 1.935400 TGGGTGGAGGCATGGGAAT 60.935 57.895 0.00 0.00 0.00 3.01
184 185 1.456331 GGGTGGAGGCATGGGAATG 60.456 63.158 0.00 0.00 0.00 2.67
185 186 1.456331 GGTGGAGGCATGGGAATGG 60.456 63.158 0.00 0.00 0.00 3.16
186 187 1.614711 GTGGAGGCATGGGAATGGA 59.385 57.895 0.00 0.00 0.00 3.41
187 188 0.753111 GTGGAGGCATGGGAATGGAC 60.753 60.000 0.00 0.00 0.00 4.02
188 189 1.526917 GGAGGCATGGGAATGGACG 60.527 63.158 0.00 0.00 0.00 4.79
189 190 1.526917 GAGGCATGGGAATGGACGG 60.527 63.158 0.00 0.00 0.00 4.79
190 191 3.219198 GGCATGGGAATGGACGGC 61.219 66.667 0.00 0.00 0.00 5.68
191 192 3.585990 GCATGGGAATGGACGGCG 61.586 66.667 4.80 4.80 0.00 6.46
192 193 3.585990 CATGGGAATGGACGGCGC 61.586 66.667 6.90 0.00 0.00 6.53
193 194 4.875713 ATGGGAATGGACGGCGCC 62.876 66.667 19.07 19.07 0.00 6.53
220 221 2.898840 CAGCGGCCACCATGCTAG 60.899 66.667 2.24 0.00 37.15 3.42
221 222 3.083349 AGCGGCCACCATGCTAGA 61.083 61.111 2.24 0.00 37.15 2.43
222 223 2.111878 GCGGCCACCATGCTAGAT 59.888 61.111 2.24 0.00 0.00 1.98
223 224 1.526917 GCGGCCACCATGCTAGATT 60.527 57.895 2.24 0.00 0.00 2.40
224 225 1.789078 GCGGCCACCATGCTAGATTG 61.789 60.000 2.24 0.00 0.00 2.67
225 226 0.464373 CGGCCACCATGCTAGATTGT 60.464 55.000 2.24 0.00 0.00 2.71
226 227 1.767759 GGCCACCATGCTAGATTGTT 58.232 50.000 0.00 0.00 0.00 2.83
227 228 1.678101 GGCCACCATGCTAGATTGTTC 59.322 52.381 0.00 0.00 0.00 3.18
228 229 1.678101 GCCACCATGCTAGATTGTTCC 59.322 52.381 0.00 0.00 0.00 3.62
229 230 2.945440 GCCACCATGCTAGATTGTTCCA 60.945 50.000 0.00 0.00 0.00 3.53
230 231 2.947652 CCACCATGCTAGATTGTTCCAG 59.052 50.000 0.00 0.00 0.00 3.86
231 232 3.370846 CCACCATGCTAGATTGTTCCAGA 60.371 47.826 0.00 0.00 0.00 3.86
232 233 4.264253 CACCATGCTAGATTGTTCCAGAA 58.736 43.478 0.00 0.00 0.00 3.02
233 234 4.701651 CACCATGCTAGATTGTTCCAGAAA 59.298 41.667 0.00 0.00 0.00 2.52
234 235 4.702131 ACCATGCTAGATTGTTCCAGAAAC 59.298 41.667 0.00 0.00 38.43 2.78
235 236 4.946157 CCATGCTAGATTGTTCCAGAAACT 59.054 41.667 0.00 0.00 38.76 2.66
236 237 5.416952 CCATGCTAGATTGTTCCAGAAACTT 59.583 40.000 0.00 0.00 38.76 2.66
237 238 6.404074 CCATGCTAGATTGTTCCAGAAACTTC 60.404 42.308 0.00 0.00 38.76 3.01
238 239 5.003804 TGCTAGATTGTTCCAGAAACTTCC 58.996 41.667 0.00 0.00 38.76 3.46
239 240 5.221925 TGCTAGATTGTTCCAGAAACTTCCT 60.222 40.000 0.00 0.00 38.76 3.36
240 241 5.707764 GCTAGATTGTTCCAGAAACTTCCTT 59.292 40.000 0.00 0.00 38.76 3.36
241 242 6.207614 GCTAGATTGTTCCAGAAACTTCCTTT 59.792 38.462 0.00 0.00 38.76 3.11
242 243 7.255625 GCTAGATTGTTCCAGAAACTTCCTTTT 60.256 37.037 0.00 0.00 38.76 2.27
243 244 7.423844 AGATTGTTCCAGAAACTTCCTTTTT 57.576 32.000 0.00 0.00 38.76 1.94
266 267 8.592105 TTTTTAATTTCTCAGCAATGAGGTTG 57.408 30.769 5.48 0.00 40.90 3.77
267 268 6.899393 TTAATTTCTCAGCAATGAGGTTGT 57.101 33.333 5.48 0.00 40.07 3.32
268 269 4.778534 ATTTCTCAGCAATGAGGTTGTG 57.221 40.909 5.48 0.00 40.07 3.33
269 270 2.189594 TCTCAGCAATGAGGTTGTGG 57.810 50.000 5.48 0.00 40.07 4.17
270 271 1.171308 CTCAGCAATGAGGTTGTGGG 58.829 55.000 0.00 0.00 40.07 4.61
271 272 0.770499 TCAGCAATGAGGTTGTGGGA 59.230 50.000 0.00 0.00 40.07 4.37
272 273 1.171308 CAGCAATGAGGTTGTGGGAG 58.829 55.000 0.00 0.00 40.07 4.30
273 274 1.067295 AGCAATGAGGTTGTGGGAGA 58.933 50.000 0.00 0.00 40.07 3.71
274 275 1.637553 AGCAATGAGGTTGTGGGAGAT 59.362 47.619 0.00 0.00 40.07 2.75
275 276 2.846206 AGCAATGAGGTTGTGGGAGATA 59.154 45.455 0.00 0.00 40.07 1.98
276 277 3.266772 AGCAATGAGGTTGTGGGAGATAA 59.733 43.478 0.00 0.00 40.07 1.75
277 278 3.629398 GCAATGAGGTTGTGGGAGATAAG 59.371 47.826 0.00 0.00 40.07 1.73
278 279 4.202441 CAATGAGGTTGTGGGAGATAAGG 58.798 47.826 0.00 0.00 33.01 2.69
279 280 3.199442 TGAGGTTGTGGGAGATAAGGA 57.801 47.619 0.00 0.00 0.00 3.36
280 281 3.736094 TGAGGTTGTGGGAGATAAGGAT 58.264 45.455 0.00 0.00 0.00 3.24
281 282 3.455910 TGAGGTTGTGGGAGATAAGGATG 59.544 47.826 0.00 0.00 0.00 3.51
282 283 3.456277 GAGGTTGTGGGAGATAAGGATGT 59.544 47.826 0.00 0.00 0.00 3.06
283 284 3.200825 AGGTTGTGGGAGATAAGGATGTG 59.799 47.826 0.00 0.00 0.00 3.21
284 285 3.199946 GGTTGTGGGAGATAAGGATGTGA 59.800 47.826 0.00 0.00 0.00 3.58
285 286 4.324254 GGTTGTGGGAGATAAGGATGTGAA 60.324 45.833 0.00 0.00 0.00 3.18
286 287 4.760530 TGTGGGAGATAAGGATGTGAAG 57.239 45.455 0.00 0.00 0.00 3.02
287 288 4.361783 TGTGGGAGATAAGGATGTGAAGA 58.638 43.478 0.00 0.00 0.00 2.87
288 289 4.406972 TGTGGGAGATAAGGATGTGAAGAG 59.593 45.833 0.00 0.00 0.00 2.85
289 290 4.651503 GTGGGAGATAAGGATGTGAAGAGA 59.348 45.833 0.00 0.00 0.00 3.10
290 291 4.898265 TGGGAGATAAGGATGTGAAGAGAG 59.102 45.833 0.00 0.00 0.00 3.20
291 292 4.283212 GGGAGATAAGGATGTGAAGAGAGG 59.717 50.000 0.00 0.00 0.00 3.69
292 293 4.898861 GGAGATAAGGATGTGAAGAGAGGT 59.101 45.833 0.00 0.00 0.00 3.85
293 294 5.221422 GGAGATAAGGATGTGAAGAGAGGTG 60.221 48.000 0.00 0.00 0.00 4.00
294 295 2.777832 AAGGATGTGAAGAGAGGTGC 57.222 50.000 0.00 0.00 0.00 5.01
295 296 0.534412 AGGATGTGAAGAGAGGTGCG 59.466 55.000 0.00 0.00 0.00 5.34
296 297 0.460987 GGATGTGAAGAGAGGTGCGG 60.461 60.000 0.00 0.00 0.00 5.69
297 298 0.460987 GATGTGAAGAGAGGTGCGGG 60.461 60.000 0.00 0.00 0.00 6.13
298 299 1.194781 ATGTGAAGAGAGGTGCGGGT 61.195 55.000 0.00 0.00 0.00 5.28
299 300 0.541063 TGTGAAGAGAGGTGCGGGTA 60.541 55.000 0.00 0.00 0.00 3.69
300 301 0.824759 GTGAAGAGAGGTGCGGGTAT 59.175 55.000 0.00 0.00 0.00 2.73
301 302 1.112113 TGAAGAGAGGTGCGGGTATC 58.888 55.000 0.00 0.00 0.00 2.24
302 303 1.342076 TGAAGAGAGGTGCGGGTATCT 60.342 52.381 0.00 0.00 0.00 1.98
303 304 1.757699 GAAGAGAGGTGCGGGTATCTT 59.242 52.381 0.00 0.00 0.00 2.40
304 305 1.867363 AGAGAGGTGCGGGTATCTTT 58.133 50.000 0.00 0.00 0.00 2.52
305 306 2.188817 AGAGAGGTGCGGGTATCTTTT 58.811 47.619 0.00 0.00 0.00 2.27
306 307 2.093447 AGAGAGGTGCGGGTATCTTTTG 60.093 50.000 0.00 0.00 0.00 2.44
307 308 1.628846 AGAGGTGCGGGTATCTTTTGT 59.371 47.619 0.00 0.00 0.00 2.83
308 309 2.835764 AGAGGTGCGGGTATCTTTTGTA 59.164 45.455 0.00 0.00 0.00 2.41
309 310 3.262405 AGAGGTGCGGGTATCTTTTGTAA 59.738 43.478 0.00 0.00 0.00 2.41
310 311 4.004982 GAGGTGCGGGTATCTTTTGTAAA 58.995 43.478 0.00 0.00 0.00 2.01
311 312 4.400120 AGGTGCGGGTATCTTTTGTAAAA 58.600 39.130 0.00 0.00 0.00 1.52
312 313 5.014202 AGGTGCGGGTATCTTTTGTAAAAT 58.986 37.500 0.00 0.00 0.00 1.82
313 314 5.479027 AGGTGCGGGTATCTTTTGTAAAATT 59.521 36.000 0.00 0.00 0.00 1.82
314 315 6.660094 AGGTGCGGGTATCTTTTGTAAAATTA 59.340 34.615 0.00 0.00 0.00 1.40
315 316 7.340999 AGGTGCGGGTATCTTTTGTAAAATTAT 59.659 33.333 0.00 0.00 0.00 1.28
316 317 7.646526 GGTGCGGGTATCTTTTGTAAAATTATC 59.353 37.037 0.00 0.00 0.00 1.75
317 318 8.185505 GTGCGGGTATCTTTTGTAAAATTATCA 58.814 33.333 0.00 0.00 0.00 2.15
318 319 8.908903 TGCGGGTATCTTTTGTAAAATTATCAT 58.091 29.630 0.00 0.00 0.00 2.45
336 337 9.561069 AATTATCATAGTTTGCTTTCTATCCGT 57.439 29.630 0.00 0.00 0.00 4.69
337 338 8.589335 TTATCATAGTTTGCTTTCTATCCGTC 57.411 34.615 0.00 0.00 0.00 4.79
338 339 5.972935 TCATAGTTTGCTTTCTATCCGTCA 58.027 37.500 0.00 0.00 0.00 4.35
339 340 6.403049 TCATAGTTTGCTTTCTATCCGTCAA 58.597 36.000 0.00 0.00 0.00 3.18
340 341 6.876789 TCATAGTTTGCTTTCTATCCGTCAAA 59.123 34.615 0.00 0.00 0.00 2.69
341 342 7.552687 TCATAGTTTGCTTTCTATCCGTCAAAT 59.447 33.333 0.00 0.00 0.00 2.32
342 343 8.826710 CATAGTTTGCTTTCTATCCGTCAAATA 58.173 33.333 0.00 0.00 0.00 1.40
343 344 7.865706 AGTTTGCTTTCTATCCGTCAAATAT 57.134 32.000 0.00 0.00 0.00 1.28
344 345 8.958119 AGTTTGCTTTCTATCCGTCAAATATA 57.042 30.769 0.00 0.00 0.00 0.86
345 346 9.046296 AGTTTGCTTTCTATCCGTCAAATATAG 57.954 33.333 0.00 0.00 0.00 1.31
346 347 9.042008 GTTTGCTTTCTATCCGTCAAATATAGA 57.958 33.333 0.00 0.00 31.89 1.98
347 348 9.778741 TTTGCTTTCTATCCGTCAAATATAGAT 57.221 29.630 0.00 0.00 33.44 1.98
348 349 8.988064 TGCTTTCTATCCGTCAAATATAGATC 57.012 34.615 0.00 0.00 33.44 2.75
349 350 7.755373 TGCTTTCTATCCGTCAAATATAGATCG 59.245 37.037 0.00 0.00 33.44 3.69
350 351 7.221067 GCTTTCTATCCGTCAAATATAGATCGG 59.779 40.741 0.00 0.00 39.40 4.18
351 352 6.694877 TCTATCCGTCAAATATAGATCGGG 57.305 41.667 13.68 4.29 38.70 5.14
352 353 3.587797 TCCGTCAAATATAGATCGGGC 57.412 47.619 13.68 0.00 38.70 6.13
353 354 2.094906 TCCGTCAAATATAGATCGGGCG 60.095 50.000 13.68 0.00 38.70 6.13
354 355 2.259618 CGTCAAATATAGATCGGGCGG 58.740 52.381 0.00 0.00 0.00 6.13
355 356 2.352421 CGTCAAATATAGATCGGGCGGT 60.352 50.000 0.00 0.00 0.00 5.68
356 357 3.251571 GTCAAATATAGATCGGGCGGTC 58.748 50.000 0.00 0.00 0.00 4.79
357 358 3.056749 GTCAAATATAGATCGGGCGGTCT 60.057 47.826 0.00 0.00 0.00 3.85
358 359 4.157289 GTCAAATATAGATCGGGCGGTCTA 59.843 45.833 0.00 0.00 0.00 2.59
359 360 4.954202 TCAAATATAGATCGGGCGGTCTAT 59.046 41.667 3.43 3.43 40.02 1.98
360 361 6.039047 GTCAAATATAGATCGGGCGGTCTATA 59.961 42.308 16.22 16.22 41.56 1.31
361 362 6.776116 TCAAATATAGATCGGGCGGTCTATAT 59.224 38.462 18.23 18.23 45.63 0.86
364 365 7.684937 ATATAGATCGGGCGGTCTATATTAC 57.315 40.000 18.23 0.00 43.21 1.89
365 366 3.693807 AGATCGGGCGGTCTATATTACA 58.306 45.455 0.00 0.00 0.00 2.41
366 367 4.084287 AGATCGGGCGGTCTATATTACAA 58.916 43.478 0.00 0.00 0.00 2.41
367 368 3.928727 TCGGGCGGTCTATATTACAAG 57.071 47.619 0.00 0.00 0.00 3.16
368 369 3.489355 TCGGGCGGTCTATATTACAAGA 58.511 45.455 0.00 0.00 0.00 3.02
369 370 4.084287 TCGGGCGGTCTATATTACAAGAT 58.916 43.478 0.00 0.00 0.00 2.40
370 371 4.082408 TCGGGCGGTCTATATTACAAGATG 60.082 45.833 0.00 0.00 0.00 2.90
371 372 4.504858 GGGCGGTCTATATTACAAGATGG 58.495 47.826 0.00 0.00 0.00 3.51
372 373 3.933332 GGCGGTCTATATTACAAGATGGC 59.067 47.826 0.00 0.00 0.00 4.40
373 374 4.562757 GGCGGTCTATATTACAAGATGGCA 60.563 45.833 0.00 0.00 0.00 4.92
374 375 4.627467 GCGGTCTATATTACAAGATGGCAG 59.373 45.833 0.00 0.00 0.00 4.85
375 376 5.171476 CGGTCTATATTACAAGATGGCAGG 58.829 45.833 0.00 0.00 0.00 4.85
376 377 4.938226 GGTCTATATTACAAGATGGCAGGC 59.062 45.833 0.00 0.00 0.00 4.85
377 378 5.513094 GGTCTATATTACAAGATGGCAGGCA 60.513 44.000 0.00 0.00 0.00 4.75
378 379 5.409826 GTCTATATTACAAGATGGCAGGCAC 59.590 44.000 0.00 0.00 0.00 5.01
379 380 2.512692 ATTACAAGATGGCAGGCACA 57.487 45.000 0.00 0.00 0.00 4.57
380 381 1.533625 TTACAAGATGGCAGGCACAC 58.466 50.000 0.00 0.00 0.00 3.82
381 382 0.322456 TACAAGATGGCAGGCACACC 60.322 55.000 0.00 0.00 0.00 4.16
382 383 1.604308 CAAGATGGCAGGCACACCA 60.604 57.895 0.00 0.00 41.01 4.17
384 385 0.968901 AAGATGGCAGGCACACCATG 60.969 55.000 10.23 0.00 45.56 3.66
396 397 3.579335 CACACCATGCATCATCACAAA 57.421 42.857 0.00 0.00 0.00 2.83
397 398 3.247442 CACACCATGCATCATCACAAAC 58.753 45.455 0.00 0.00 0.00 2.93
398 399 3.057104 CACACCATGCATCATCACAAACT 60.057 43.478 0.00 0.00 0.00 2.66
399 400 3.192001 ACACCATGCATCATCACAAACTC 59.808 43.478 0.00 0.00 0.00 3.01
400 401 2.421073 ACCATGCATCATCACAAACTCG 59.579 45.455 0.00 0.00 0.00 4.18
401 402 2.223409 CCATGCATCATCACAAACTCGG 60.223 50.000 0.00 0.00 0.00 4.63
402 403 2.183478 TGCATCATCACAAACTCGGT 57.817 45.000 0.00 0.00 0.00 4.69
403 404 2.503331 TGCATCATCACAAACTCGGTT 58.497 42.857 0.00 0.00 0.00 4.44
404 405 2.884012 TGCATCATCACAAACTCGGTTT 59.116 40.909 0.00 0.00 36.05 3.27
405 406 3.317711 TGCATCATCACAAACTCGGTTTT 59.682 39.130 0.03 0.00 33.10 2.43
406 407 4.202101 TGCATCATCACAAACTCGGTTTTT 60.202 37.500 0.03 0.00 33.10 1.94
457 458 6.559810 TGTTCACACACTTGGTTATCAAAAG 58.440 36.000 0.00 0.00 34.56 2.27
527 528 8.744652 TGTTTCTTGGACAGATGTTTCTTTTTA 58.255 29.630 0.00 0.00 0.00 1.52
528 529 9.020813 GTTTCTTGGACAGATGTTTCTTTTTAC 57.979 33.333 0.00 0.00 0.00 2.01
557 559 6.842437 AGACAATGCTCTAGTAGTTTCTCA 57.158 37.500 0.00 0.00 0.00 3.27
565 568 6.752351 TGCTCTAGTAGTTTCTCAAAATAGCG 59.248 38.462 0.00 0.00 0.00 4.26
583 586 1.073964 CGATTGTGACTCCACTGCTG 58.926 55.000 0.00 0.00 43.55 4.41
590 593 3.265791 GTGACTCCACTGCTGAAATAGG 58.734 50.000 0.00 0.00 40.10 2.57
594 597 0.107703 CCACTGCTGAAATAGGGCGA 60.108 55.000 0.00 0.00 0.00 5.54
601 604 6.204688 CACTGCTGAAATAGGGCGATAATTAA 59.795 38.462 0.00 0.00 0.00 1.40
603 606 7.448469 ACTGCTGAAATAGGGCGATAATTAATT 59.552 33.333 5.89 5.89 0.00 1.40
604 607 8.856153 TGCTGAAATAGGGCGATAATTAATTA 57.144 30.769 10.27 10.27 0.00 1.40
657 762 7.186021 ACAAATGGTGAAAACTAAGTACTCG 57.814 36.000 0.00 0.00 0.00 4.18
750 855 4.218200 TGCATGTCAAACTCCGAATTTGAT 59.782 37.500 8.17 0.00 45.27 2.57
775 880 0.374758 GTGTGTGTGCATGCGATAGG 59.625 55.000 14.09 0.00 0.00 2.57
808 918 2.477754 ACAAGGAAAAGCTTACGTACGC 59.522 45.455 16.72 15.68 0.00 4.42
889 999 4.079958 ACAAGTGTTGTACTCCCTCCTTTT 60.080 41.667 0.00 0.00 43.27 2.27
890 1000 4.790718 AGTGTTGTACTCCCTCCTTTTT 57.209 40.909 0.00 0.00 33.17 1.94
896 1006 8.418662 GTGTTGTACTCCCTCCTTTTTAAAAAT 58.581 33.333 13.55 0.00 0.00 1.82
897 1007 9.643735 TGTTGTACTCCCTCCTTTTTAAAAATA 57.356 29.630 13.55 5.03 0.00 1.40
900 1010 9.871175 TGTACTCCCTCCTTTTTAAAAATAAGT 57.129 29.630 13.55 12.07 0.00 2.24
974 1084 7.106239 GGTGGGAGTGATATATCCTATGTTTG 58.894 42.308 10.25 0.00 35.80 2.93
1141 1251 2.818169 GCACACACCCCTCACCTCA 61.818 63.158 0.00 0.00 0.00 3.86
1142 1252 1.372683 CACACACCCCTCACCTCAG 59.627 63.158 0.00 0.00 0.00 3.35
1143 1253 1.074471 ACACACCCCTCACCTCAGT 60.074 57.895 0.00 0.00 0.00 3.41
1144 1254 1.122019 ACACACCCCTCACCTCAGTC 61.122 60.000 0.00 0.00 0.00 3.51
1145 1255 1.908793 ACACCCCTCACCTCAGTCG 60.909 63.158 0.00 0.00 0.00 4.18
1146 1256 1.606601 CACCCCTCACCTCAGTCGA 60.607 63.158 0.00 0.00 0.00 4.20
1243 1364 4.980805 GTGCGGAGGACGGTGCAA 62.981 66.667 1.61 0.00 40.33 4.08
1255 1376 2.032681 GTGCAAGAGAGGCCGGTT 59.967 61.111 1.90 0.00 0.00 4.44
1318 1439 2.031012 CACCTGCTCCTGCGACAA 59.969 61.111 0.00 0.00 43.34 3.18
1429 1550 2.804090 GTCACCGACGTCGCCTTC 60.804 66.667 31.73 17.18 38.18 3.46
1498 1619 0.809636 TTACCATGCACATCGCCGAG 60.810 55.000 0.00 0.00 41.33 4.63
1552 1673 0.397941 TGTGGCTCTGAACCTTCCTG 59.602 55.000 0.00 0.00 0.00 3.86
1560 1681 2.303022 TCTGAACCTTCCTGGATGACAC 59.697 50.000 10.93 2.97 39.71 3.67
1578 1699 1.009675 CGCTGCCCGTTAATGCATC 60.010 57.895 0.00 0.00 36.79 3.91
1583 1704 2.032981 CCCGTTAATGCATCCCAGC 58.967 57.895 0.00 0.00 0.00 4.85
1605 1726 4.212214 GCCTGAATCAGTTATAAGCTTCCG 59.788 45.833 0.00 0.00 0.00 4.30
1675 1796 6.071320 TCTATATCCGCATGCCATATACTCT 58.929 40.000 13.15 0.00 0.00 3.24
1677 1798 3.868757 TCCGCATGCCATATACTCTAC 57.131 47.619 13.15 0.00 0.00 2.59
1698 1819 8.605325 TCTACCTAGTATTGTAAGCTTCCTTT 57.395 34.615 0.00 0.00 32.47 3.11
1786 1908 3.761897 TCATCCCACCGACTTTCATTTT 58.238 40.909 0.00 0.00 0.00 1.82
1791 1913 6.658188 TCCCACCGACTTTCATTTTATTTT 57.342 33.333 0.00 0.00 0.00 1.82
1867 2001 3.190874 GTTGAATAGGCTCGAGGAAGTG 58.809 50.000 15.58 0.00 0.00 3.16
1882 2016 7.158697 TCGAGGAAGTGATGAATTTTGTAAGA 58.841 34.615 0.00 0.00 0.00 2.10
1945 2080 1.276622 GCTAGGAGGTTGGTTGAGGA 58.723 55.000 0.00 0.00 0.00 3.71
1951 2086 2.304761 GGAGGTTGGTTGAGGACATGTA 59.695 50.000 0.00 0.00 0.00 2.29
2015 2151 5.652891 TGCCCTTTTTACTCCGCATATAAAA 59.347 36.000 0.00 0.00 0.00 1.52
2107 2259 4.944048 ACAGTGTGAAAATTAAAGCCACC 58.056 39.130 0.00 0.00 0.00 4.61
2109 2261 4.744631 CAGTGTGAAAATTAAAGCCACCAC 59.255 41.667 0.00 0.00 0.00 4.16
2232 2384 6.721668 AGGGAGGAATAAAACAAAGAAGGAAG 59.278 38.462 0.00 0.00 0.00 3.46
2253 2405 4.866921 AGTTTACCGTTTCCAGCAAAATC 58.133 39.130 0.00 0.00 0.00 2.17
2273 2425 1.337817 CGGTCGTTGAAGCGAGACAG 61.338 60.000 0.00 0.00 42.48 3.51
2280 2432 4.155462 TCGTTGAAGCGAGACAGTAGTTAT 59.845 41.667 0.00 0.00 35.83 1.89
2313 2465 2.409152 TTCAACCGGCGAAACATTTC 57.591 45.000 9.30 0.00 0.00 2.17
2370 2545 2.123988 TTGGACGTGCGCATTGGAAC 62.124 55.000 15.91 2.88 0.00 3.62
2411 2589 1.816224 GTAAGCCCGCAAAAAGGATGA 59.184 47.619 0.00 0.00 0.00 2.92
2413 2591 0.251341 AGCCCGCAAAAAGGATGAGT 60.251 50.000 0.00 0.00 0.00 3.41
2418 2596 3.365969 CCCGCAAAAAGGATGAGTGTTAC 60.366 47.826 0.00 0.00 0.00 2.50
2505 2683 8.238189 AATGAAGCATTAAGGGGATACACACAA 61.238 37.037 0.00 0.00 35.44 3.33
2525 2703 2.867109 AAAGAGCATGCACTGGTACT 57.133 45.000 21.98 0.00 35.19 2.73
2543 2721 4.393680 GGTACTCGGTCTCTGCATAGATAG 59.606 50.000 4.96 6.36 31.21 2.08
2548 2726 3.761218 CGGTCTCTGCATAGATAGGATGT 59.239 47.826 4.96 0.00 31.21 3.06
2550 2728 5.163703 CGGTCTCTGCATAGATAGGATGTAC 60.164 48.000 4.96 0.00 31.21 2.90
2565 2743 4.072131 GGATGTACACAGTCAACACCAAT 58.928 43.478 0.00 0.00 0.00 3.16
2608 2786 4.975502 CGACAGCTAGCAAAATCAAACAAA 59.024 37.500 18.83 0.00 0.00 2.83
2616 2794 6.193514 AGCAAAATCAAACAAAACCAAAGG 57.806 33.333 0.00 0.00 0.00 3.11
2649 2829 8.073467 TGGTGGAATAAAAAGAACAAAACTCT 57.927 30.769 0.00 0.00 0.00 3.24
2687 2867 6.485984 ACAATGATCAACAATCTATCTCAGCC 59.514 38.462 0.00 0.00 35.24 4.85
2697 2877 4.132122 TCTATCTCAGCCACCATATCCA 57.868 45.455 0.00 0.00 0.00 3.41
2699 2879 0.752658 TCTCAGCCACCATATCCACG 59.247 55.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.942748 GCCCGAAACTAATGTGACCATTA 59.057 43.478 0.00 0.00 41.50 1.90
7 8 2.752903 GCCCGAAACTAATGTGACCATT 59.247 45.455 0.00 0.00 43.62 3.16
8 9 2.365582 GCCCGAAACTAATGTGACCAT 58.634 47.619 0.00 0.00 0.00 3.55
9 10 1.612199 GGCCCGAAACTAATGTGACCA 60.612 52.381 0.00 0.00 0.00 4.02
10 11 1.092348 GGCCCGAAACTAATGTGACC 58.908 55.000 0.00 0.00 0.00 4.02
11 12 0.725117 CGGCCCGAAACTAATGTGAC 59.275 55.000 0.00 0.00 0.00 3.67
12 13 0.322322 ACGGCCCGAAACTAATGTGA 59.678 50.000 11.71 0.00 0.00 3.58
13 14 2.012937 TACGGCCCGAAACTAATGTG 57.987 50.000 11.71 0.00 0.00 3.21
14 15 2.766345 TTACGGCCCGAAACTAATGT 57.234 45.000 11.71 0.00 0.00 2.71
15 16 2.220133 CGATTACGGCCCGAAACTAATG 59.780 50.000 11.71 0.00 35.72 1.90
16 17 2.101249 TCGATTACGGCCCGAAACTAAT 59.899 45.455 11.71 2.83 40.21 1.73
17 18 1.476085 TCGATTACGGCCCGAAACTAA 59.524 47.619 11.71 0.00 40.21 2.24
18 19 1.102154 TCGATTACGGCCCGAAACTA 58.898 50.000 11.71 0.00 40.21 2.24
19 20 0.247185 TTCGATTACGGCCCGAAACT 59.753 50.000 11.71 0.00 39.03 2.66
20 21 0.371301 GTTCGATTACGGCCCGAAAC 59.629 55.000 11.71 6.63 42.75 2.78
21 22 0.740516 GGTTCGATTACGGCCCGAAA 60.741 55.000 11.71 0.00 42.75 3.46
22 23 1.153588 GGTTCGATTACGGCCCGAA 60.154 57.895 11.71 9.36 39.58 4.30
23 24 2.495866 GGTTCGATTACGGCCCGA 59.504 61.111 11.71 0.00 40.21 5.14
24 25 2.958016 CGGTTCGATTACGGCCCG 60.958 66.667 0.00 0.00 42.58 6.13
25 26 2.586914 CCGGTTCGATTACGGCCC 60.587 66.667 9.51 0.00 41.23 5.80
26 27 2.586914 CCCGGTTCGATTACGGCC 60.587 66.667 15.05 0.00 45.93 6.13
27 28 1.879884 GTCCCGGTTCGATTACGGC 60.880 63.158 15.05 2.29 45.93 5.68
28 29 1.024271 TAGTCCCGGTTCGATTACGG 58.976 55.000 13.92 13.92 46.79 4.02
29 30 2.849880 TTAGTCCCGGTTCGATTACG 57.150 50.000 0.00 0.00 41.26 3.18
30 31 4.311816 TCATTAGTCCCGGTTCGATTAC 57.688 45.455 0.00 0.00 0.00 1.89
31 32 4.798263 GCATCATTAGTCCCGGTTCGATTA 60.798 45.833 0.00 0.00 0.00 1.75
32 33 3.728845 CATCATTAGTCCCGGTTCGATT 58.271 45.455 0.00 0.00 0.00 3.34
33 34 2.548067 GCATCATTAGTCCCGGTTCGAT 60.548 50.000 0.00 0.00 0.00 3.59
34 35 1.202486 GCATCATTAGTCCCGGTTCGA 60.202 52.381 0.00 0.00 0.00 3.71
35 36 1.217882 GCATCATTAGTCCCGGTTCG 58.782 55.000 0.00 0.00 0.00 3.95
36 37 1.202486 TCGCATCATTAGTCCCGGTTC 60.202 52.381 0.00 0.00 0.00 3.62
37 38 0.828022 TCGCATCATTAGTCCCGGTT 59.172 50.000 0.00 0.00 0.00 4.44
38 39 0.828022 TTCGCATCATTAGTCCCGGT 59.172 50.000 0.00 0.00 0.00 5.28
39 40 1.217882 GTTCGCATCATTAGTCCCGG 58.782 55.000 0.00 0.00 0.00 5.73
40 41 0.852777 CGTTCGCATCATTAGTCCCG 59.147 55.000 0.00 0.00 0.00 5.14
41 42 1.935933 ACGTTCGCATCATTAGTCCC 58.064 50.000 0.00 0.00 0.00 4.46
42 43 4.565564 ACTTTACGTTCGCATCATTAGTCC 59.434 41.667 0.00 0.00 0.00 3.85
43 44 5.552104 CGACTTTACGTTCGCATCATTAGTC 60.552 44.000 0.00 0.00 0.00 2.59
44 45 4.264614 CGACTTTACGTTCGCATCATTAGT 59.735 41.667 0.00 0.00 0.00 2.24
45 46 4.264614 ACGACTTTACGTTCGCATCATTAG 59.735 41.667 7.25 0.00 44.14 1.73
46 47 4.168014 ACGACTTTACGTTCGCATCATTA 58.832 39.130 7.25 0.00 44.14 1.90
47 48 2.991190 ACGACTTTACGTTCGCATCATT 59.009 40.909 7.25 0.00 44.14 2.57
48 49 2.602878 ACGACTTTACGTTCGCATCAT 58.397 42.857 7.25 0.00 44.14 2.45
49 50 2.054687 ACGACTTTACGTTCGCATCA 57.945 45.000 7.25 0.00 44.14 3.07
50 51 3.002344 CACTACGACTTTACGTTCGCATC 60.002 47.826 7.25 0.00 44.14 3.91
51 52 2.912967 CACTACGACTTTACGTTCGCAT 59.087 45.455 7.25 0.00 44.14 4.73
52 53 2.309693 CACTACGACTTTACGTTCGCA 58.690 47.619 7.25 0.00 44.14 5.10
53 54 1.645751 CCACTACGACTTTACGTTCGC 59.354 52.381 7.25 0.00 44.14 4.70
54 55 3.187478 TCCACTACGACTTTACGTTCG 57.813 47.619 5.86 5.86 44.14 3.95
55 56 4.380974 CACTTCCACTACGACTTTACGTTC 59.619 45.833 0.00 0.00 44.14 3.95
56 57 4.293415 CACTTCCACTACGACTTTACGTT 58.707 43.478 0.00 0.00 44.14 3.99
58 59 2.660236 GCACTTCCACTACGACTTTACG 59.340 50.000 0.00 0.00 39.31 3.18
59 60 3.645884 TGCACTTCCACTACGACTTTAC 58.354 45.455 0.00 0.00 0.00 2.01
60 61 4.530710 ATGCACTTCCACTACGACTTTA 57.469 40.909 0.00 0.00 0.00 1.85
61 62 2.902705 TGCACTTCCACTACGACTTT 57.097 45.000 0.00 0.00 0.00 2.66
62 63 3.402628 AATGCACTTCCACTACGACTT 57.597 42.857 0.00 0.00 0.00 3.01
63 64 3.326747 GAAATGCACTTCCACTACGACT 58.673 45.455 0.00 0.00 0.00 4.18
64 65 2.415512 GGAAATGCACTTCCACTACGAC 59.584 50.000 21.67 0.00 43.84 4.34
65 66 2.695359 GGAAATGCACTTCCACTACGA 58.305 47.619 21.67 0.00 43.84 3.43
72 73 0.388520 GCCGTTGGAAATGCACTTCC 60.389 55.000 19.94 19.94 44.54 3.46
73 74 0.313672 TGCCGTTGGAAATGCACTTC 59.686 50.000 0.00 0.00 32.60 3.01
74 75 0.749649 TTGCCGTTGGAAATGCACTT 59.250 45.000 0.00 0.00 36.41 3.16
75 76 0.031994 GTTGCCGTTGGAAATGCACT 59.968 50.000 0.00 0.00 36.41 4.40
76 77 0.249238 TGTTGCCGTTGGAAATGCAC 60.249 50.000 0.00 0.00 36.41 4.57
77 78 0.031857 CTGTTGCCGTTGGAAATGCA 59.968 50.000 0.00 0.00 35.16 3.96
78 79 0.313672 TCTGTTGCCGTTGGAAATGC 59.686 50.000 0.00 0.00 0.00 3.56
79 80 1.608590 AGTCTGTTGCCGTTGGAAATG 59.391 47.619 0.00 0.00 0.00 2.32
80 81 1.981256 AGTCTGTTGCCGTTGGAAAT 58.019 45.000 0.00 0.00 0.00 2.17
81 82 1.757682 AAGTCTGTTGCCGTTGGAAA 58.242 45.000 0.00 0.00 0.00 3.13
82 83 1.673920 GAAAGTCTGTTGCCGTTGGAA 59.326 47.619 0.00 0.00 0.00 3.53
83 84 1.134220 AGAAAGTCTGTTGCCGTTGGA 60.134 47.619 0.00 0.00 0.00 3.53
84 85 1.002468 CAGAAAGTCTGTTGCCGTTGG 60.002 52.381 0.00 0.00 39.58 3.77
85 86 1.597937 GCAGAAAGTCTGTTGCCGTTG 60.598 52.381 7.08 0.00 45.94 4.10
86 87 0.663153 GCAGAAAGTCTGTTGCCGTT 59.337 50.000 7.08 0.00 45.94 4.44
105 106 3.004524 GCGATCCAGTACTAGTGTAAGGG 59.995 52.174 5.39 0.19 31.12 3.95
111 112 2.288457 CCCATGCGATCCAGTACTAGTG 60.288 54.545 5.39 0.00 0.00 2.74
114 115 1.686587 CACCCATGCGATCCAGTACTA 59.313 52.381 0.00 0.00 0.00 1.82
152 153 0.246635 CCACCCAGTCCGACAACTAG 59.753 60.000 0.40 0.00 0.00 2.57
153 154 0.178955 TCCACCCAGTCCGACAACTA 60.179 55.000 0.40 0.00 0.00 2.24
154 155 1.458777 TCCACCCAGTCCGACAACT 60.459 57.895 0.40 0.00 0.00 3.16
155 156 1.004918 CTCCACCCAGTCCGACAAC 60.005 63.158 0.40 0.00 0.00 3.32
156 157 2.214216 CCTCCACCCAGTCCGACAA 61.214 63.158 0.40 0.00 0.00 3.18
157 158 2.603473 CCTCCACCCAGTCCGACA 60.603 66.667 0.40 0.00 0.00 4.35
158 159 4.083862 GCCTCCACCCAGTCCGAC 62.084 72.222 0.00 0.00 0.00 4.79
159 160 3.924013 ATGCCTCCACCCAGTCCGA 62.924 63.158 0.00 0.00 0.00 4.55
160 161 3.402681 ATGCCTCCACCCAGTCCG 61.403 66.667 0.00 0.00 0.00 4.79
161 162 2.273449 CATGCCTCCACCCAGTCC 59.727 66.667 0.00 0.00 0.00 3.85
162 163 2.273449 CCATGCCTCCACCCAGTC 59.727 66.667 0.00 0.00 0.00 3.51
163 164 3.341629 CCCATGCCTCCACCCAGT 61.342 66.667 0.00 0.00 0.00 4.00
164 165 1.941403 ATTCCCATGCCTCCACCCAG 61.941 60.000 0.00 0.00 0.00 4.45
165 166 1.935400 ATTCCCATGCCTCCACCCA 60.935 57.895 0.00 0.00 0.00 4.51
166 167 1.456331 CATTCCCATGCCTCCACCC 60.456 63.158 0.00 0.00 0.00 4.61
167 168 1.456331 CCATTCCCATGCCTCCACC 60.456 63.158 0.00 0.00 0.00 4.61
168 169 0.753111 GTCCATTCCCATGCCTCCAC 60.753 60.000 0.00 0.00 0.00 4.02
169 170 1.614711 GTCCATTCCCATGCCTCCA 59.385 57.895 0.00 0.00 0.00 3.86
170 171 1.526917 CGTCCATTCCCATGCCTCC 60.527 63.158 0.00 0.00 0.00 4.30
171 172 1.526917 CCGTCCATTCCCATGCCTC 60.527 63.158 0.00 0.00 0.00 4.70
172 173 2.597340 CCGTCCATTCCCATGCCT 59.403 61.111 0.00 0.00 0.00 4.75
173 174 3.219198 GCCGTCCATTCCCATGCC 61.219 66.667 0.00 0.00 0.00 4.40
174 175 3.585990 CGCCGTCCATTCCCATGC 61.586 66.667 0.00 0.00 0.00 4.06
175 176 3.585990 GCGCCGTCCATTCCCATG 61.586 66.667 0.00 0.00 0.00 3.66
176 177 4.875713 GGCGCCGTCCATTCCCAT 62.876 66.667 12.58 0.00 0.00 4.00
203 204 2.671370 ATCTAGCATGGTGGCCGCTG 62.671 60.000 17.49 8.83 37.20 5.18
204 205 1.987807 AATCTAGCATGGTGGCCGCT 61.988 55.000 17.49 11.93 39.80 5.52
205 206 1.526917 AATCTAGCATGGTGGCCGC 60.527 57.895 8.12 8.12 0.00 6.53
206 207 0.464373 ACAATCTAGCATGGTGGCCG 60.464 55.000 7.89 0.00 0.00 6.13
207 208 1.678101 GAACAATCTAGCATGGTGGCC 59.322 52.381 7.89 0.00 0.00 5.36
208 209 1.678101 GGAACAATCTAGCATGGTGGC 59.322 52.381 7.89 0.00 0.00 5.01
209 210 2.947652 CTGGAACAATCTAGCATGGTGG 59.052 50.000 7.89 4.47 38.70 4.61
210 211 3.877559 TCTGGAACAATCTAGCATGGTG 58.122 45.455 7.89 0.00 38.70 4.17
211 212 4.574674 TTCTGGAACAATCTAGCATGGT 57.425 40.909 1.62 1.62 38.70 3.55
212 213 4.946157 AGTTTCTGGAACAATCTAGCATGG 59.054 41.667 0.98 0.00 40.84 3.66
213 214 6.404074 GGAAGTTTCTGGAACAATCTAGCATG 60.404 42.308 0.98 0.00 40.84 4.06
214 215 5.649831 GGAAGTTTCTGGAACAATCTAGCAT 59.350 40.000 0.98 0.00 40.84 3.79
215 216 5.003804 GGAAGTTTCTGGAACAATCTAGCA 58.996 41.667 0.98 0.00 40.84 3.49
216 217 5.249420 AGGAAGTTTCTGGAACAATCTAGC 58.751 41.667 0.98 0.00 40.84 3.42
217 218 7.751768 AAAGGAAGTTTCTGGAACAATCTAG 57.248 36.000 0.98 0.00 40.84 2.43
218 219 8.533569 AAAAAGGAAGTTTCTGGAACAATCTA 57.466 30.769 0.98 0.00 40.84 1.98
219 220 7.423844 AAAAAGGAAGTTTCTGGAACAATCT 57.576 32.000 0.98 0.00 40.84 2.40
252 253 0.770499 TCCCACAACCTCATTGCTGA 59.230 50.000 0.00 0.00 42.62 4.26
253 254 1.171308 CTCCCACAACCTCATTGCTG 58.829 55.000 0.00 0.00 42.62 4.41
254 255 1.067295 TCTCCCACAACCTCATTGCT 58.933 50.000 0.00 0.00 42.62 3.91
255 256 2.134789 ATCTCCCACAACCTCATTGC 57.865 50.000 0.00 0.00 42.62 3.56
256 257 4.080356 TCCTTATCTCCCACAACCTCATTG 60.080 45.833 0.00 0.00 44.60 2.82
257 258 4.111577 TCCTTATCTCCCACAACCTCATT 58.888 43.478 0.00 0.00 0.00 2.57
258 259 3.736094 TCCTTATCTCCCACAACCTCAT 58.264 45.455 0.00 0.00 0.00 2.90
259 260 3.199442 TCCTTATCTCCCACAACCTCA 57.801 47.619 0.00 0.00 0.00 3.86
260 261 3.456277 ACATCCTTATCTCCCACAACCTC 59.544 47.826 0.00 0.00 0.00 3.85
261 262 3.200825 CACATCCTTATCTCCCACAACCT 59.799 47.826 0.00 0.00 0.00 3.50
262 263 3.199946 TCACATCCTTATCTCCCACAACC 59.800 47.826 0.00 0.00 0.00 3.77
263 264 4.487714 TCACATCCTTATCTCCCACAAC 57.512 45.455 0.00 0.00 0.00 3.32
264 265 4.782691 TCTTCACATCCTTATCTCCCACAA 59.217 41.667 0.00 0.00 0.00 3.33
265 266 4.361783 TCTTCACATCCTTATCTCCCACA 58.638 43.478 0.00 0.00 0.00 4.17
266 267 4.651503 TCTCTTCACATCCTTATCTCCCAC 59.348 45.833 0.00 0.00 0.00 4.61
267 268 4.883759 TCTCTTCACATCCTTATCTCCCA 58.116 43.478 0.00 0.00 0.00 4.37
268 269 4.283212 CCTCTCTTCACATCCTTATCTCCC 59.717 50.000 0.00 0.00 0.00 4.30
269 270 4.898861 ACCTCTCTTCACATCCTTATCTCC 59.101 45.833 0.00 0.00 0.00 3.71
270 271 5.738783 GCACCTCTCTTCACATCCTTATCTC 60.739 48.000 0.00 0.00 0.00 2.75
271 272 4.100808 GCACCTCTCTTCACATCCTTATCT 59.899 45.833 0.00 0.00 0.00 1.98
272 273 4.376146 GCACCTCTCTTCACATCCTTATC 58.624 47.826 0.00 0.00 0.00 1.75
273 274 3.181471 CGCACCTCTCTTCACATCCTTAT 60.181 47.826 0.00 0.00 0.00 1.73
274 275 2.166459 CGCACCTCTCTTCACATCCTTA 59.834 50.000 0.00 0.00 0.00 2.69
275 276 1.066573 CGCACCTCTCTTCACATCCTT 60.067 52.381 0.00 0.00 0.00 3.36
276 277 0.534412 CGCACCTCTCTTCACATCCT 59.466 55.000 0.00 0.00 0.00 3.24
277 278 0.460987 CCGCACCTCTCTTCACATCC 60.461 60.000 0.00 0.00 0.00 3.51
278 279 0.460987 CCCGCACCTCTCTTCACATC 60.461 60.000 0.00 0.00 0.00 3.06
279 280 1.194781 ACCCGCACCTCTCTTCACAT 61.195 55.000 0.00 0.00 0.00 3.21
280 281 0.541063 TACCCGCACCTCTCTTCACA 60.541 55.000 0.00 0.00 0.00 3.58
281 282 0.824759 ATACCCGCACCTCTCTTCAC 59.175 55.000 0.00 0.00 0.00 3.18
282 283 1.112113 GATACCCGCACCTCTCTTCA 58.888 55.000 0.00 0.00 0.00 3.02
283 284 1.404843 AGATACCCGCACCTCTCTTC 58.595 55.000 0.00 0.00 0.00 2.87
284 285 1.867363 AAGATACCCGCACCTCTCTT 58.133 50.000 0.00 0.00 0.00 2.85
285 286 1.867363 AAAGATACCCGCACCTCTCT 58.133 50.000 0.00 0.00 0.00 3.10
286 287 2.280628 CAAAAGATACCCGCACCTCTC 58.719 52.381 0.00 0.00 0.00 3.20
287 288 1.628846 ACAAAAGATACCCGCACCTCT 59.371 47.619 0.00 0.00 0.00 3.69
288 289 2.109425 ACAAAAGATACCCGCACCTC 57.891 50.000 0.00 0.00 0.00 3.85
289 290 3.706600 TTACAAAAGATACCCGCACCT 57.293 42.857 0.00 0.00 0.00 4.00
290 291 4.769859 TTTTACAAAAGATACCCGCACC 57.230 40.909 0.00 0.00 0.00 5.01
291 292 8.185505 TGATAATTTTACAAAAGATACCCGCAC 58.814 33.333 0.00 0.00 0.00 5.34
292 293 8.282455 TGATAATTTTACAAAAGATACCCGCA 57.718 30.769 0.00 0.00 0.00 5.69
310 311 9.561069 ACGGATAGAAAGCAAACTATGATAATT 57.439 29.630 0.00 0.00 30.74 1.40
311 312 9.209175 GACGGATAGAAAGCAAACTATGATAAT 57.791 33.333 0.00 0.00 30.74 1.28
312 313 8.201464 TGACGGATAGAAAGCAAACTATGATAA 58.799 33.333 0.00 0.00 30.74 1.75
313 314 7.722363 TGACGGATAGAAAGCAAACTATGATA 58.278 34.615 0.00 0.00 30.74 2.15
314 315 6.582636 TGACGGATAGAAAGCAAACTATGAT 58.417 36.000 0.00 0.00 30.74 2.45
315 316 5.972935 TGACGGATAGAAAGCAAACTATGA 58.027 37.500 0.00 0.00 30.74 2.15
316 317 6.662414 TTGACGGATAGAAAGCAAACTATG 57.338 37.500 0.00 0.00 30.74 2.23
317 318 7.865706 ATTTGACGGATAGAAAGCAAACTAT 57.134 32.000 0.00 0.00 32.87 2.12
318 319 8.958119 ATATTTGACGGATAGAAAGCAAACTA 57.042 30.769 0.00 0.00 0.00 2.24
319 320 7.865706 ATATTTGACGGATAGAAAGCAAACT 57.134 32.000 0.00 0.00 0.00 2.66
320 321 9.042008 TCTATATTTGACGGATAGAAAGCAAAC 57.958 33.333 0.00 0.00 30.92 2.93
321 322 9.778741 ATCTATATTTGACGGATAGAAAGCAAA 57.221 29.630 0.00 0.00 36.15 3.68
322 323 9.424319 GATCTATATTTGACGGATAGAAAGCAA 57.576 33.333 0.00 0.00 36.15 3.91
323 324 7.755373 CGATCTATATTTGACGGATAGAAAGCA 59.245 37.037 0.00 0.00 36.15 3.91
324 325 7.221067 CCGATCTATATTTGACGGATAGAAAGC 59.779 40.741 0.00 0.00 42.40 3.51
325 326 7.702772 CCCGATCTATATTTGACGGATAGAAAG 59.297 40.741 0.00 0.00 42.40 2.62
326 327 7.544622 CCCGATCTATATTTGACGGATAGAAA 58.455 38.462 0.00 0.00 42.40 2.52
327 328 6.405508 GCCCGATCTATATTTGACGGATAGAA 60.406 42.308 0.00 0.00 42.40 2.10
328 329 5.067413 GCCCGATCTATATTTGACGGATAGA 59.933 44.000 0.00 0.00 42.40 1.98
329 330 5.282510 GCCCGATCTATATTTGACGGATAG 58.717 45.833 0.00 0.00 42.40 2.08
330 331 4.201980 CGCCCGATCTATATTTGACGGATA 60.202 45.833 0.00 0.00 42.40 2.59
331 332 3.428999 CGCCCGATCTATATTTGACGGAT 60.429 47.826 0.00 0.00 42.40 4.18
332 333 2.094906 CGCCCGATCTATATTTGACGGA 60.095 50.000 0.00 0.00 42.40 4.69
333 334 2.259618 CGCCCGATCTATATTTGACGG 58.740 52.381 0.00 0.00 40.03 4.79
334 335 2.259618 CCGCCCGATCTATATTTGACG 58.740 52.381 0.00 0.00 0.00 4.35
335 336 3.056749 AGACCGCCCGATCTATATTTGAC 60.057 47.826 0.00 0.00 0.00 3.18
336 337 3.162666 AGACCGCCCGATCTATATTTGA 58.837 45.455 0.00 0.00 0.00 2.69
337 338 3.594603 AGACCGCCCGATCTATATTTG 57.405 47.619 0.00 0.00 0.00 2.32
340 341 7.229308 TGTAATATAGACCGCCCGATCTATAT 58.771 38.462 15.51 15.51 46.24 0.86
341 342 6.594744 TGTAATATAGACCGCCCGATCTATA 58.405 40.000 12.71 12.71 42.05 1.31
342 343 5.443283 TGTAATATAGACCGCCCGATCTAT 58.557 41.667 9.34 9.34 40.47 1.98
343 344 4.847198 TGTAATATAGACCGCCCGATCTA 58.153 43.478 0.00 0.00 32.11 1.98
344 345 3.693807 TGTAATATAGACCGCCCGATCT 58.306 45.455 0.00 0.00 0.00 2.75
345 346 4.157289 TCTTGTAATATAGACCGCCCGATC 59.843 45.833 0.00 0.00 0.00 3.69
346 347 4.084287 TCTTGTAATATAGACCGCCCGAT 58.916 43.478 0.00 0.00 0.00 4.18
347 348 3.489355 TCTTGTAATATAGACCGCCCGA 58.511 45.455 0.00 0.00 0.00 5.14
348 349 3.928727 TCTTGTAATATAGACCGCCCG 57.071 47.619 0.00 0.00 0.00 6.13
349 350 4.504858 CCATCTTGTAATATAGACCGCCC 58.495 47.826 0.00 0.00 0.00 6.13
350 351 3.933332 GCCATCTTGTAATATAGACCGCC 59.067 47.826 0.00 0.00 0.00 6.13
351 352 4.566004 TGCCATCTTGTAATATAGACCGC 58.434 43.478 0.00 0.00 0.00 5.68
352 353 5.171476 CCTGCCATCTTGTAATATAGACCG 58.829 45.833 0.00 0.00 0.00 4.79
353 354 4.938226 GCCTGCCATCTTGTAATATAGACC 59.062 45.833 0.00 0.00 0.00 3.85
354 355 5.409826 GTGCCTGCCATCTTGTAATATAGAC 59.590 44.000 0.00 0.00 0.00 2.59
355 356 5.071653 TGTGCCTGCCATCTTGTAATATAGA 59.928 40.000 0.00 0.00 0.00 1.98
356 357 5.180117 GTGTGCCTGCCATCTTGTAATATAG 59.820 44.000 0.00 0.00 0.00 1.31
357 358 5.063204 GTGTGCCTGCCATCTTGTAATATA 58.937 41.667 0.00 0.00 0.00 0.86
358 359 3.885297 GTGTGCCTGCCATCTTGTAATAT 59.115 43.478 0.00 0.00 0.00 1.28
359 360 3.278574 GTGTGCCTGCCATCTTGTAATA 58.721 45.455 0.00 0.00 0.00 0.98
360 361 2.094675 GTGTGCCTGCCATCTTGTAAT 58.905 47.619 0.00 0.00 0.00 1.89
361 362 1.533625 GTGTGCCTGCCATCTTGTAA 58.466 50.000 0.00 0.00 0.00 2.41
362 363 0.322456 GGTGTGCCTGCCATCTTGTA 60.322 55.000 0.00 0.00 0.00 2.41
363 364 1.604593 GGTGTGCCTGCCATCTTGT 60.605 57.895 0.00 0.00 0.00 3.16
364 365 0.968901 ATGGTGTGCCTGCCATCTTG 60.969 55.000 0.00 0.00 41.24 3.02
365 366 0.968901 CATGGTGTGCCTGCCATCTT 60.969 55.000 0.00 0.00 43.05 2.40
366 367 1.379443 CATGGTGTGCCTGCCATCT 60.379 57.895 0.00 0.00 43.05 2.90
367 368 3.203442 CATGGTGTGCCTGCCATC 58.797 61.111 0.00 0.00 43.05 3.51
376 377 3.057104 AGTTTGTGATGATGCATGGTGTG 60.057 43.478 2.46 0.00 0.00 3.82
377 378 3.159472 AGTTTGTGATGATGCATGGTGT 58.841 40.909 2.46 0.00 0.00 4.16
378 379 3.729762 CGAGTTTGTGATGATGCATGGTG 60.730 47.826 2.46 0.00 0.00 4.17
379 380 2.421073 CGAGTTTGTGATGATGCATGGT 59.579 45.455 2.46 0.00 0.00 3.55
380 381 2.223409 CCGAGTTTGTGATGATGCATGG 60.223 50.000 2.46 0.00 0.00 3.66
381 382 2.421073 ACCGAGTTTGTGATGATGCATG 59.579 45.455 2.46 0.00 0.00 4.06
382 383 2.715046 ACCGAGTTTGTGATGATGCAT 58.285 42.857 0.00 0.00 0.00 3.96
383 384 2.183478 ACCGAGTTTGTGATGATGCA 57.817 45.000 0.00 0.00 0.00 3.96
384 385 3.559238 AAACCGAGTTTGTGATGATGC 57.441 42.857 1.85 0.00 34.23 3.91
416 417 8.849168 TGTGTGAACATGTCATATCTTTTCTTT 58.151 29.630 0.00 0.00 38.90 2.52
417 418 8.292448 GTGTGTGAACATGTCATATCTTTTCTT 58.708 33.333 0.00 0.00 38.90 2.52
418 419 7.663081 AGTGTGTGAACATGTCATATCTTTTCT 59.337 33.333 0.00 0.00 38.90 2.52
419 420 7.810658 AGTGTGTGAACATGTCATATCTTTTC 58.189 34.615 0.00 0.00 38.90 2.29
420 421 7.750229 AGTGTGTGAACATGTCATATCTTTT 57.250 32.000 0.00 0.00 38.90 2.27
436 437 7.284261 TGATTCTTTTGATAACCAAGTGTGTGA 59.716 33.333 0.00 0.00 35.94 3.58
457 458 1.672881 CTTCGGAACCAGCCATGATTC 59.327 52.381 0.00 0.00 0.00 2.52
527 528 4.899352 ACTAGAGCATTGTCTTTCCAGT 57.101 40.909 0.00 0.00 0.00 4.00
528 529 5.971763 ACTACTAGAGCATTGTCTTTCCAG 58.028 41.667 0.00 0.00 0.00 3.86
557 559 4.393062 CAGTGGAGTCACAATCGCTATTTT 59.607 41.667 0.00 0.00 45.91 1.82
565 568 2.462456 TCAGCAGTGGAGTCACAATC 57.538 50.000 0.00 0.00 45.91 2.67
629 734 4.404073 ACTTAGTTTTCACCATTTGTGGCA 59.596 37.500 0.00 0.00 45.48 4.92
682 787 0.455410 CCACCATGCCCATTTACGTG 59.545 55.000 0.00 0.00 0.00 4.49
687 792 1.319614 GCGTACCACCATGCCCATTT 61.320 55.000 0.00 0.00 0.00 2.32
689 794 2.124320 GCGTACCACCATGCCCAT 60.124 61.111 0.00 0.00 0.00 4.00
729 834 5.702865 ACATCAAATTCGGAGTTTGACATG 58.297 37.500 24.88 21.89 45.27 3.21
730 835 5.473162 TGACATCAAATTCGGAGTTTGACAT 59.527 36.000 24.88 17.73 45.27 3.06
731 836 4.819088 TGACATCAAATTCGGAGTTTGACA 59.181 37.500 24.88 17.59 45.27 3.58
732 837 5.356882 TGACATCAAATTCGGAGTTTGAC 57.643 39.130 24.88 15.72 45.27 3.18
750 855 0.311477 GCATGCACACACACATGACA 59.689 50.000 14.21 0.00 45.23 3.58
775 880 4.436183 GCTTTTCCTTGTTGATAGAGACGC 60.436 45.833 0.00 0.00 0.00 5.19
808 918 6.034044 GCTCACTACAAACTAAATCAGAGACG 59.966 42.308 0.00 0.00 0.00 4.18
871 981 7.957992 TTTTTAAAAAGGAGGGAGTACAACA 57.042 32.000 9.31 0.00 0.00 3.33
934 1044 5.245977 CACTCCCACCCAAAATAAATGACTT 59.754 40.000 0.00 0.00 0.00 3.01
952 1062 7.181125 ACTCCAAACATAGGATATATCACTCCC 59.819 40.741 14.60 0.00 33.99 4.30
991 1101 9.095065 AGCTTTACTCCTTTATTGTACGTATTG 57.905 33.333 0.00 0.00 0.00 1.90
1141 1251 2.792890 CGCTTGAGATTGACGATCGACT 60.793 50.000 24.34 12.00 39.85 4.18
1142 1252 1.514811 CGCTTGAGATTGACGATCGAC 59.485 52.381 24.34 17.11 39.85 4.20
1143 1253 1.827578 CGCTTGAGATTGACGATCGA 58.172 50.000 24.34 0.00 39.85 3.59
1144 1254 0.228238 GCGCTTGAGATTGACGATCG 59.772 55.000 14.88 14.88 39.85 3.69
1145 1255 1.005557 GTGCGCTTGAGATTGACGATC 60.006 52.381 9.73 0.00 34.83 3.69
1146 1256 1.002366 GTGCGCTTGAGATTGACGAT 58.998 50.000 9.73 0.00 0.00 3.73
1198 1319 2.872557 CTGCTGACCATGGTTGCG 59.127 61.111 27.33 20.97 33.13 4.85
1199 1320 2.270257 TGCTGCTGACCATGGTTGC 61.270 57.895 26.90 26.90 0.00 4.17
1200 1321 1.582968 GTGCTGCTGACCATGGTTG 59.417 57.895 20.85 16.00 0.00 3.77
1201 1322 1.604593 GGTGCTGCTGACCATGGTT 60.605 57.895 20.85 2.15 33.25 3.67
1203 1324 1.604308 TTGGTGCTGCTGACCATGG 60.604 57.895 11.19 11.19 43.13 3.66
1204 1325 1.582968 GTTGGTGCTGCTGACCATG 59.417 57.895 12.04 0.00 43.13 3.66
1243 1364 2.526873 ACCACAACCGGCCTCTCT 60.527 61.111 0.00 0.00 0.00 3.10
1552 1673 2.845752 TAACGGGCAGCGTGTCATCC 62.846 60.000 0.00 0.00 0.00 3.51
1560 1681 1.009675 GATGCATTAACGGGCAGCG 60.010 57.895 0.00 0.00 44.24 5.18
1569 1690 2.824689 TTCAGGCTGGGATGCATTAA 57.175 45.000 15.73 0.00 34.04 1.40
1575 1696 2.431954 AACTGATTCAGGCTGGGATG 57.568 50.000 15.73 4.44 35.51 3.51
1578 1699 3.817647 GCTTATAACTGATTCAGGCTGGG 59.182 47.826 15.73 3.04 35.51 4.45
1583 1704 5.360591 ACGGAAGCTTATAACTGATTCAGG 58.639 41.667 17.66 0.29 35.51 3.86
1605 1726 1.207593 GCACTCGCACACATGGAAC 59.792 57.895 0.00 0.00 38.36 3.62
1643 1764 5.104982 TGGCATGCGGATATAGATACATTGA 60.105 40.000 12.44 0.00 0.00 2.57
1652 1773 6.338214 AGAGTATATGGCATGCGGATATAG 57.662 41.667 20.43 0.00 0.00 1.31
1656 1777 3.133003 GGTAGAGTATATGGCATGCGGAT 59.867 47.826 12.44 8.81 0.00 4.18
1677 1798 8.652290 AGGATAAAGGAAGCTTACAATACTAGG 58.348 37.037 12.25 0.00 0.00 3.02
1698 1819 8.257306 GGTTTATTTGCCATTTCTTGAAGGATA 58.743 33.333 0.00 0.00 0.00 2.59
1786 1908 9.569122 AGCCTCCTCGCTAATTAAAATAAAATA 57.431 29.630 0.00 0.00 37.32 1.40
1791 1913 7.051623 TGAAAGCCTCCTCGCTAATTAAAATA 58.948 34.615 0.00 0.00 38.44 1.40
1796 1918 3.704566 TCTGAAAGCCTCCTCGCTAATTA 59.295 43.478 0.00 0.00 38.44 1.40
1798 1920 2.111384 TCTGAAAGCCTCCTCGCTAAT 58.889 47.619 0.00 0.00 38.44 1.73
1882 2016 6.318648 TGACACAAGTTAGCAAAAGTTGAGAT 59.681 34.615 20.17 9.13 35.24 2.75
1924 2058 0.253327 CTCAACCAACCTCCTAGCCC 59.747 60.000 0.00 0.00 0.00 5.19
1945 2080 4.870426 GTCTTGTTCGATCCACATACATGT 59.130 41.667 2.69 2.69 42.84 3.21
1951 2086 8.964476 AATTATTAGTCTTGTTCGATCCACAT 57.036 30.769 0.00 0.00 0.00 3.21
1991 2126 2.791347 TATGCGGAGTAAAAAGGGCA 57.209 45.000 0.00 0.00 34.60 5.36
1993 2128 9.030301 CAAATTTTATATGCGGAGTAAAAAGGG 57.970 33.333 11.91 4.02 32.84 3.95
2088 2240 4.506288 GTGTGGTGGCTTTAATTTTCACAC 59.494 41.667 0.00 0.00 44.02 3.82
2178 2330 7.386059 GTCATTTTTGTTCCCCACATAAGATT 58.614 34.615 0.00 0.00 34.43 2.40
2186 2338 1.000394 CCGGTCATTTTTGTTCCCCAC 60.000 52.381 0.00 0.00 0.00 4.61
2253 2405 2.087009 GTCTCGCTTCAACGACCGG 61.087 63.158 0.00 0.00 37.09 5.28
2313 2465 2.072298 CCTGAACTCTCTTCCTTTGCG 58.928 52.381 0.00 0.00 0.00 4.85
2315 2467 3.867984 GCCTCCTGAACTCTCTTCCTTTG 60.868 52.174 0.00 0.00 0.00 2.77
2380 2558 1.074872 CGGGCTTACGTCGGTCTTTC 61.075 60.000 0.00 0.00 0.00 2.62
2393 2571 0.890683 CTCATCCTTTTTGCGGGCTT 59.109 50.000 0.00 0.00 0.00 4.35
2488 2666 5.475564 GCTCTTTTTGTGTGTATCCCCTTAA 59.524 40.000 0.00 0.00 0.00 1.85
2505 2683 3.077359 GAGTACCAGTGCATGCTCTTTT 58.923 45.455 19.25 11.51 0.00 2.27
2525 2703 3.790089 TCCTATCTATGCAGAGACCGA 57.210 47.619 14.34 6.47 33.22 4.69
2543 2721 3.120321 TGGTGTTGACTGTGTACATCC 57.880 47.619 0.00 0.00 0.00 3.51
2548 2726 4.052608 CGTGTATTGGTGTTGACTGTGTA 58.947 43.478 0.00 0.00 0.00 2.90
2550 2728 2.869801 ACGTGTATTGGTGTTGACTGTG 59.130 45.455 0.00 0.00 0.00 3.66
2565 2743 6.151004 TGTCGACATGATTTTCTTACGTGTA 58.849 36.000 15.76 0.00 34.55 2.90
2608 2786 3.139397 TCCACCAAGACATACCTTTGGTT 59.861 43.478 5.45 0.00 37.09 3.67
2616 2794 8.573035 TGTTCTTTTTATTCCACCAAGACATAC 58.427 33.333 0.00 0.00 0.00 2.39
2682 2862 1.146041 GCGTGGATATGGTGGCTGA 59.854 57.895 0.00 0.00 0.00 4.26
2685 2865 1.453015 TTGGCGTGGATATGGTGGC 60.453 57.895 0.00 0.00 0.00 5.01
2687 2867 0.393673 TGGTTGGCGTGGATATGGTG 60.394 55.000 0.00 0.00 0.00 4.17
2697 2877 1.686355 TGTCAAAAGATGGTTGGCGT 58.314 45.000 0.00 0.00 33.17 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.