>input_sequence_70784
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---------------------------------------------------------------------CAATAAAGGAG
TAAAGCTCCATGCATGTGCCATGTGGCACGCCAGGACCACGAAGCTGACCTAATGTTCCGGCTCTATGCACCTCCCCGAT
CCATATTTCTGACCTCCACAGCCCCCACAAGGGCACACACCCCTCACCTCAGTCGA----------TCGTCAATCTCAAG
CGCACGAACGCG-AAGTCCCGTGGCCGACGGCGACGGCCGCAACCATGGTCAGCAGCACCAACGAGGTGCGGAGGACGGT
GCAAGAGAGGCCGGTTGTGGTGGTGGGGCGGCCGGAGTGCTGCCTGGCGGTCGTGGCCCGGCACCTGCTCCTGCGACAAG
GCGTGAACCCGGCGGTGCTGGAGGTCAGCTACGACGCCGACCCGGCGACGCTCGTCTACGCGCTCCGGTCCAAGGACGAC
AACACCAAGTTGGTCACCGACGTCGCCTTCCCGGTGGTGTTCGTCGGGGGCAGGCTGTTGGGCGGGCTGGACCGACTCAT
TACCATGCACATCGCCGAGGAGCTCGTGCCGCTCCTGAGGCAGGCAGGAGCCCTGTGGCTCTGAACCTTCCTGGATGACA
CGCTGCCCGTTAATGCATCCCAGCCTGAATCAGTTATAAGCTTCCGTTCCATGTGTGCGAGTGCTTTGTTTCCTGTTTTT
TCCTCAATGTATCTATATCCGCATGCCATATACTCTACCTAGTATTGTAAGCTTCCTTTATCCTTCAAGAAATGGCAA--
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>chr2B_1_TraesCS2B01G174000
CAGAACTAATGGTCACATTAGTTTCGGGCCGTAATCGAACCGGGACTAATGATGCGAACGTAAAGTCGTAGTGGAAGTGC
ATTTCCAACGGCAACAGACTTTCTGCCCTTACACTAGTACTGGATCGCATGGGTGTTTCTTTTCTTTTAAGACTAGTTGT
CGGACTGGGTGGAGGCATGGGAATGGACGGCGCCGGCAGGCGGCAGCGGCCACCATGCTAGATTGTTCCAGAAACTTCCT
TTTTTTAATTTCTCAGCAATGAGGTTGTGGGAGATAAGGATGTGAAGAGAGGTGCGGGTATCTTTTGTAAAATTATCATA
GTTTGCTTTCTATCCGTCAAATATAGATCGGGCGGTCTATATTACAAGATGGCAGGCACACCATGCATCATCACAAACTC
GGTTTTTTATAAAGATAAAGAAAAGATATGACATGTTCACACACTTGGTTATCAAAAGAATCATGGCTGGTTCCGAAGAT
TGGAAGTTTGGCATTTTTATCTGTTTCTTGGACAGATGTTTCTTTTTAC-TGGAAAGACAATGCTCTAGTAGTTTCTCAA
AA-TAGCGATTGTGACTCCACTGCTGAAATAGGGCGATAATTAATTAT--------------------------------
----------------------------------------------------------------------TATTTGTCAG
ATGGATGACTATTTGCCACAAATGGTGAAAACTAAGTACTCGTACTAATTTAAGTATAATCAGAATCACGTAAATGGGCA
TGGTGGTACGCATGCCCTGTCCGTCAGGATATGCATGTCAAACTCCGAATTTGATGTCATGTGTGTGTGCATGCGATAGG
C----GTCTCTATCAACAAGGAAAAGCTTAC-GTACGCGTCTCTGATTTAGTTTGTAGTGAGCGCGTATGAGTGACAGTG
TGTATTTGCTTGCGTACAAGTGTTGTACTCCCTCCTTTTTAAAAATAAGTGACTCAACTTTATACTAACTTTAGTATAAA
GTTAAGTCATTTATTTTGGGTGGGAGTGATATATCCTATGTTTGGAGTATTTTCTATAATCAATACGTACAATAAAGGAG
TAAAGCTCCATGCATGTGCCATGTGGCACGCCAGGACCACGAAGCTGACCTAATGTTCCGGCTCTATGCACCTCCCCGAT
CCATATTTCTGACCTCCACAGCCCCCACAAGGGCACACACCCCTCACCTCAGTCGA----------TCGTCAATCTCAAG
CGCACGAACGCG-AAGTCCCGTGGCCGACGGCGACGGCCGCAACCATGGTCAGCAGCACCAACGAGGTGCGGAGGACGGT
GCAAGAGAGGCCGGTTGTGGTGGTGGGGCGGCCGGAGTGCTGCCTGGCGGTCGTGGCCCGGCACCTGCTCCTGCGACAAG
GCGTGAACCCGGCGGTGCTGGAGGTCAGCTACGACGCCGACCCGGCGACGCTCGTCTACGCGCTCCGGTCCAAGGACGAC
AACACCAAGTTGGTCACCGACGTCGCCTTCCCGGTGGTGTTCGTCGGGGGCAGGCTGTTGGGCGGGCTGGACCGACTCAT
TACCATGCACATCGCCGAGGAGCTCGTGCCGCTCCTGAGGCAGGCAGGAGCCCTGTGGCTCTGAACCTTCCTGGATGACA
CGCTGCCCGTTAATGCATCCCAGCCTGAATCAGTTATAAGCTTCCGTTCCATGTGTGCGAGTGCTTTGTTTCCTGTTTTT
TCCTCAATGTATCTATATCCGCATGCCATATACTCTACCTAGTATTGTAAGCTTCCTTTATCCTTCAAGAAATGGCAAAT
AAACCG-GTTTGTTCATAAGATCGACTTGCGCAAAAGGCCTTGGAATCATCCCACCGACTTTCATTTTATTTTATTTTAA
-----------TTAGCGAGGAGGCTTTCAGATTGTTTTTT-CACAAAGCCTTTCAGGTTGTTGAATAGGCTCGAGGAAGT
GATGAATTTTGTAAGATCTCAACTTTTGCTAACTTGTGTCATGCGACACAATTGTCTG-GGCTAGGAGGTTGGTTGAGGA
CATGTATGTGGATCGAACAAGACTAATAATTTTAATACTCCCTCTTGCCCTTT-TTACTCCGCATATAAAATTTGTCTGA
AGTCAAACTTTAAAAAGTTTAACCATATTTATATAAAA---ATATATTAATAT------CTA-------AAGTTATACAG
TGTGAAAATTAAAGCCACCACACATCTAATGATATTGATTTCGTATTGTGATTATTAATTGTCTTTATATAAAATTTTGA
TTTCAGACAAATCTTATGTGGGGAACAAAAATGACCGGAGGGAGGAATAAAACAAAGAAGGAAGTTTACCGTTTCCAGCA
AAATCCGGTCGTTGAAGCGAGACAGTAGTTATGGAAAAGTCTTTTTTCAACCGGCGAAACATTTCGCAAAGGAAGAGAGT
TCAGGA-----------------------GGCTATTAGTGCTAGTTTGGACGTGCGCATTGGAACA---AGTCTTTTGAA
AGACCGACGTAAGCCCGCAAAAAGGATGAGTGTTACGTTTTTTTATTGATATCTTATAATTTATCTTCAATAAAAAGGTG
GAATTTATTAGCTTAAAATGAAGCATTAAGGGGATACACACAAAAAGAGCATGCACTGGTACTCGGTCTCTGCATAGATA
GGATGTACACAGTCAACACCAATACACGTAAGAAAATCATGTCGACAGCTAGCAAAATCAAACAAAACCAAAGGTATGTC
TTGGTGGAAT--AAAAAGAACAAAACTCTGAAGCGATCAAAACAATGATCAACAATCTATCTCAGCCACCATATCCACGC
CAACCATCTTTTGACAT
>chr2D_88
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-------ACGGCAACAGACTTTCTGGCCTTATACCAGTACTGGATCGCATGGGTGTTTCTTTTCTTTTAAGA--------
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---------------------AAAGATATGACATGTCCACACACTTGGTTATCAAAAAAATCATGGCTAGTTCCGAAGAA
TGGAAGTTTGGCATTTTTATATGTTTCTTGGACAGATGTTTCTTTTTTAGTGGAAAGACAATGCTCTTGTAGTTTCTCCA
AAATAGCAATTGTGACCCCACTGTTAAAATAGAGTGCTAATTATTACTCCCTTGTTTCAAAATAAGTGACTCGACTTTGT
ACTAACTTTATATAC-------TAAAGTTGGTACAAAGTTAAGTCACTTATTTTAGGACGAATGGAG---TATTTTTTAG
ATGGATGACTATTAGCCACAAATGGTGAAAACTAAGTACTCCTACTAATTTAAGTATAATCAGAATGACG--AGTGGGCA
TGGTGGTACGCATGCCCTGTCCGTCGGGATATG----TCAAGCTCCGAATTTGACGTCATGGGTGTGTGCATGCGATAGA
TAGAAGTCTCTATCAACATGGAAAAGCTTAT-GTACGTGTCTCTTATTTAGTTTGTAATGAGCGTGTATGAGTGACAGTG
TGTATTTGCTTGCGTACAAGCGTCGTACTCCCTTCTTTCAAAAAA--------------------TAACTTTAGTATAAA
GTTGAGTCATTTATTTTGGGTCGGAGTGATATATCCTATGTTTAGAATATATTTTATAATTAATACGTACAATAAAGGAG
TAAAGCTCCATGCATGTGCCATGTGGCACGCCAGGACCACAAAGCAGACCTAATGTTCCGGCTCTATGCACCTCCCCGAT
CCATATTTCTGACCTCCACAGCCCCCACAAGGGCACACAC-----------------------TGCTCGTCGAACTCAAG
CGCACGAACGCC-AAGTACCGTGGCTGACGGCGACGGCGAATAAGATGGTGAGCAGCACCAACGAGGTGCGGAGGACGGT
GCAGGAGAGGCCGGTGGTGGTGGTGGGGCGGCCGGAGTGCTGCCTGGCGGTCGTGGCCCGGCACCTGCTCCTGCGGCAGG
GCGTGAACCCGACGGTGCTGGAGGTCAGCTACGACGCCGACCCGGCGGCGCTCGTCTACGCGCTCCGGTCCAAGGACGAC
AACACCAAGTTGGTCACCGACGTCGCCTTACCGGTGGTGTTCGTCGGAGGTAGGCTGTTGGGTGGGCTGGACCGACTCAT
TACCATGCACATCGCCGAAGAGCTCGTGCCGCTCCTGAGGCAGGCAGGAGCCCTGTGGCTCTGAACCTTCCTTGATGACA
TGCTGCCCGCTAATGGATGCCAGTCTGAATCAGTTATAAGCTTCCATTCCATGTGTGCGAGTGCTTTGTTTCCTGTTTTT
TCCCCAATGTAT-TATGTCTGCATGCCATATACTCCATCTAGTATTGTAAGCTTCCTTCATCCTTCAAGAAATGGCAAAT
AAACCGAGTTTGTTCATAAGATCGACTTGCGCAAAAGGCCTTGGAATCATCCCACCGACTTTCATTTCATTTCATTTCAT
TTTATTTTATTTTAGCGAGGCGGCTTTCAGATTGTTTTTTTTACAAAGGCTTTCAGGTTGTTGAATAGGCTCGAGGAAGT
CATGAATTTTGTAAGTTCTCAACTTTTGCTGACTTGTGTCATGCGACACAATTGTCTTAGGTTAGGAGGTTGGTTGAGGT
CATGAGTGTGGATCGAACAAGACTAATAATTTTAATACTCCCTCTGGTTCTTT-TTACTCCGCATATAAATTTTGTCTTA
AGTCAAACTTCAAAAGGTTTAATCATATTTATATAAAATATATATATTAATAT------CTACCATACTAAGTTATACAA
TGTGAAAATTAAAGCCACGAGACATCTAATGATATTGATTTCGTATTGTGAATGTTCATTAATTCTATATGAAATTTTGA
TTTCAGACAGATCTTATATGGGAAACAAAAATGACTGGATGGAGGAATAAAACAAAGAAGGAACTTTACCGTTTCCAGCA
AAATTCGGTCGTTGAAGCGAGACAATAGTTACGGAAAAGTCTTTTATCAACCGACGAAACATTTTCGAAAGGAAGAGAGT
TCAGGAGTTTGACCCCCATTACCAACGTCGGCTATTAGTGCTAGATTGGACGTGCGCATTGGAATA---AGTCTTCTAAA
AGACCGACGTCAGCCCGCAAAAAGGATAGGCGTTATGTTTTTATATTGATATCTTATAATATT--TTCAATAAAAAGGCA
GAATTTATTAGCTTAAAATGAAGCACTAAGGGGATACACACAGAAAGAGCATGCACTGGTACCCGGTCTTTGCATAATGC
ATAT------AGTCAACACTAACACACGTAAGAAAATCACGTCGGCAGCTAGCAAAATCAAACAAGACCAAAACTATGTC
TTGGTGGAATATAAAAAGAACAAAACTCCGAAGCAATCAAAACAATGATCAACAATCTATCCCAACAACCATATCCGCAC
CAACCATCTTTTGACAT
>chr2A_91
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----------GCAACAGACTTTCTGGCCTTATACCAGTACTCCATCGCATGGGTGTTTCTTTTCTTTTAAGA--------
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---------------------AAAGATATGACATGT---------------TCAAAAAAATCATGGCCGGTTACGAAGAT
TGGAAGTTTGGCATTTTTATCTGTTTCTTGGACAGATGTTTCTTTTTTAGTGGAAAGACAATGCTCTAGTAGTTTCTC--
AAATAGCAATTGTGACTCCACTGCTAAAATAGAGCGCTAACTATTACTCCCTCCATTCCA---AAATGTCTTAACTTTAT
ACTAATTTTATATTAACTAATATAAAGTTAGTACAAAGTTGAGACATTTATTTTGGGACGGAAGGAGTACTATTTGTCAT
ATGGATGACTATTGGCCACAAATGGTGAAAACTAAGTACTCCGACTAATTTAAGTATAATCAGAATAACGTGAGTGGGCA
TGGTGGTACGCATGCCATGTCCGTCAGGATATG----TCAAACTCCGAATTGGACGTCATGTGTGTGTGCATGCGATATA
C----GTCTCTATCAACAAGGAAAAGCTTACGGTACGTGTCTCTGATTTAGTTTGTAGTGAGCGCGTATGAGTGACAGTG
TGTATTTCCTTGTGTACAAGCGTTGTACTTCCTCCT---------------ACTCAACTTTATACTAACTTTAGTATAAA
GTTGAGACATTTATTTTGGGTCGGAGTGATATATCCTATGTTTAGAGTATATTTTATAATTAATACGTACAATAAAGGAG
TAAAGGTCCATGCATGTGCCATGTGGCACGCCAGGACCACGAAGCTGACCTAATGCTCGTGCTCTATGCACCTCCCCGAC
CCATATTTCTGACCTCCACAGCCCCCTCAAGGGCACACACCCCTCACCTCCAGTTGACACTACTGCTCGTCAATCTCAAG
GGCACGAACGCCCAAGTCCCGTGGCTGACGGCGACGGCGAGTAAGATGGTCAGCAGCACCAACGAAGTGCGGAGGACGGT
GCAGGAGAGGCCGGTGGTGGTGGTGGGGCGGCCGGAGTGCTGCCTGGCGGTCGTCGCCCGGCACCTGCTCCTGCGGCAGG
GCGTGAACCCGGCGGCCCTGGAGGTCAGCTACGACGCCGACCCTGCGGCGCTCGTGTACGCGCTCCGGGCCAAGGACGAC
AACACCAAGTTGGTCACCGACGTCGCCTTACCGGTGGTGTTCGTCGGAGGTAGGCTGTTGGGTGGGCTGGACCGACTCAT
TACCATGCACATCGCCGAAGAGCTCGTGCCGCTCCTGAGGCAGGCAGGTGCCCTGTGGCTCTGAACCTTCCTTGATGACA
TGCTGCCCGCTAATGGATGCCAGTCTGAATCAGTTATAAGCTTCCATTCCATGTGTGCGAGTGCTTTATTTCCTGTTTTT
TCCCCAATGTAT-TATGTCCGCATGCCATATACTCCATCTAGTATTGTAAGCTTCCTTCATCCTTCAAGAAATGGCAAAT
AAACCGAGTTTGTTCATAAGATTGACTTGCGCAAAAGGCCTTGGAATCATCCCACCGACTTTCATTTC------------
---ATTTTATTTTAGCGAGGCGGCTTTCAGATTGTTTTTTTCACAAAGGCTTTCAGGTTGTTGAATAGGCTTGAGGAAGT
CATGAATTTTGTAAGCTCTCAACTTTTGCTGACTTGTGTCATGCGACACAATTGTCTC-GGCTAGGAGGTTGGTTGTGGT
CATGTGTGTGGATCAAGCAAGACTAATAATTTTAATACTCCCTTTGGTCCTTTCTTACTCCGCATATAAATTTTGTCTGA
AGTCAAACTTTAAAAAGTTTAGTCATATTCATATAAAATATATTTTAATATCTACCATACTA-------AAGTTATACAA
TGTGAAAATTAAAGCCACGAGGCATCTAATGATATTGATTTCGTATTGTGGATGTTAATTAATTTTATATAAAATTTTGA
TTTCAGACAGATCTTATATGGGGAACAAAAATGACCTGAGGGAGGAATAAAACAAAGAAGGAACTTTACCGTTTCCAGCA
AAATTCAGTCGTTGAAGCAAGACAATAGTTACGGAAAAGTCTTTTTTCAACCGACGAAACATTTTGGAAAGGAAGAGAGT
TCAGGAGTTTGACCCCCATTACCAACGTCGGCTATTAGTGCTAGTTTGGACGTGCGCATTGGAATAATAAGTCTTTTAAA
AGACCGACGTCAGTCCGCAACAAGGATGGGCGTTATGTTTTTATATTGATATCTTATAATATT--TTAAATAAAAGGGCG
GAATTTATTAGCTTAAGATGAAGCACTAAGGGGATACACACAGAAAGAGCATGCATTGGTACCTGATCTCTGTATAGATA
TGATGGATACGGTCAACACCAACACATGTAAGAAAATCATGTCGACAGCTAGCAAAATCAAACAAGACCGAAGCTATATC
TTGATGGAATA--AAAAGAACAAAACTCCGAAGCGATCAAAACAATGATCAACA--------------------------
-----------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS------------------S-----S--S-------------------------------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS---------------S--------------------S----------------------
-----------------------------------------------SS-----------------------------S-
-------S-----------------S------S---S------S-SS---------------------------------
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-------------S---------------------------S------------------------S----S-S------
---------------------------------SSSS-----------------S------------------------S
-------------------------------------S------------------------------------------
--------------------S-----------------SS-----SSSSSS-----------------------------
---S-----------------S---------------------S------S--S------S-------------------
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--------------------------------------------------SSSSSS------------------------
-----------S-------------S------------SSSS-SS-----------------------------------
---S-----------S-----------------------------------------------------------S--S-
-----------------------------------------------S--------------------------------
-----------------------------S-----------------S--S-----------S-----------------
------------------S-----------------------------------------------------S-------
S--------S-----S--S----S---------------------S----------------------------------
---S--------S---S------------------S-S--------------------S---------------------
-------------------------------------------------------------------S----S----S-S
--------------------S---------------------------S-------------------------------
S--------------S--------------S--------------------------S---------------------S
-----S---------------------------------------S-S----------------------S---------
----------------------S--------------------------------------------------------S
------------------S-S------------------------------S-S------SSS-----------------
---------S-------S---------------------------------------------S----------------
----S-------------------S------S---------------------S----------S-S-------------
----------------------------------------------------------------S------------S--
----------S-----------------S-S----S------S-----------------S-SSS-------------S-
-------------------------S----------------S-------------------S-----------------
S----S-S--------------S------------------------------------------S-------S------
----------------------------S--------------------------------S--S-S---------S-S-
-----------------
>forward_597
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-----------------CCACTGCTGAAATAGGGCGA-------------------------------------------
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>reverse_2058
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---------------------------------------------------------GGGCTAGGAGGTTGGTTGAG---
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