Multiple sequence alignment - TraesCS2B01G167800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G167800 chr2B 100.000 4611 0 0 1 4611 140789521 140784911 0.000000e+00 8516.0
1 TraesCS2B01G167800 chr2A 89.984 2426 163 31 1222 3594 87893065 87890667 0.000000e+00 3061.0
2 TraesCS2B01G167800 chr2A 79.802 807 86 35 9 793 87894639 87893888 2.460000e-142 516.0
3 TraesCS2B01G167800 chr2A 95.745 188 2 2 919 1100 87893523 87893336 9.700000e-77 298.0
4 TraesCS2B01G167800 chr2A 86.957 184 20 3 3679 3858 87890631 87890448 2.170000e-48 204.0
5 TraesCS2B01G167800 chr2D 91.580 1247 80 16 1800 3031 87748407 87747171 0.000000e+00 1698.0
6 TraesCS2B01G167800 chr2D 86.786 1226 86 37 654 1814 87749644 87748430 0.000000e+00 1297.0
7 TraesCS2B01G167800 chr2D 92.767 553 22 12 3116 3653 87746686 87746137 0.000000e+00 784.0
8 TraesCS2B01G167800 chr2D 84.686 542 43 23 4086 4611 87745855 87745338 5.320000e-139 505.0
9 TraesCS2B01G167800 chr2D 90.823 316 23 6 3590 3899 87746155 87745840 7.140000e-113 418.0
10 TraesCS2B01G167800 chr2D 82.292 384 47 15 409 785 87750030 87749661 3.460000e-81 313.0
11 TraesCS2B01G167800 chr2D 83.929 56 9 0 58 113 556228638 556228693 2.000000e-03 54.7
12 TraesCS2B01G167800 chr2D 83.929 56 9 0 58 113 556228778 556228833 2.000000e-03 54.7
13 TraesCS2B01G167800 chr6B 88.832 197 13 5 3893 4088 213307667 213307479 2.770000e-57 233.0
14 TraesCS2B01G167800 chr4A 88.776 196 13 5 3891 4085 694747366 694747553 9.980000e-57 231.0
15 TraesCS2B01G167800 chrUn 93.985 133 8 0 3894 4026 310628671 310628539 7.820000e-48 202.0
16 TraesCS2B01G167800 chrUn 100.000 29 0 0 62 90 83805482 83805454 2.000000e-03 54.7
17 TraesCS2B01G167800 chrUn 100.000 29 0 0 62 90 83852774 83852746 2.000000e-03 54.7
18 TraesCS2B01G167800 chr3A 82.938 211 22 11 645 842 728617595 728617386 1.320000e-40 178.0
19 TraesCS2B01G167800 chr3A 83.333 162 19 8 653 811 556697056 556696900 4.810000e-30 143.0
20 TraesCS2B01G167800 chr3A 100.000 30 0 0 61 90 509418867 509418838 6.440000e-04 56.5
21 TraesCS2B01G167800 chr3A 100.000 30 0 0 62 91 617010574 617010603 6.440000e-04 56.5
22 TraesCS2B01G167800 chr3D 85.714 168 18 4 642 808 333389862 333389700 6.130000e-39 172.0
23 TraesCS2B01G167800 chr3D 87.234 141 16 2 638 777 23683441 23683580 4.780000e-35 159.0
24 TraesCS2B01G167800 chr3D 75.290 259 51 11 555 808 608165044 608165294 1.360000e-20 111.0
25 TraesCS2B01G167800 chr7D 83.432 169 22 6 642 808 560289679 560289843 7.990000e-33 152.0
26 TraesCS2B01G167800 chr4D 82.558 172 24 6 639 808 379232161 379232328 3.720000e-31 147.0
27 TraesCS2B01G167800 chr4D 82.738 168 23 5 642 808 379232550 379232388 1.340000e-30 145.0
28 TraesCS2B01G167800 chr4D 79.012 81 16 1 57 137 488192545 488192466 2.000000e-03 54.7
29 TraesCS2B01G167800 chr6D 77.959 245 39 10 561 797 141691079 141691316 6.220000e-29 139.0
30 TraesCS2B01G167800 chr5A 77.391 230 37 8 552 772 610217310 610217533 6.270000e-24 122.0
31 TraesCS2B01G167800 chr6A 83.544 79 12 1 59 137 2294898 2294975 6.400000e-09 73.1
32 TraesCS2B01G167800 chr6A 100.000 32 0 0 59 90 539703864 539703895 4.980000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G167800 chr2B 140784911 140789521 4610 True 8516.000000 8516 100.000000 1 4611 1 chr2B.!!$R1 4610
1 TraesCS2B01G167800 chr2A 87890448 87894639 4191 True 1019.750000 3061 88.122000 9 3858 4 chr2A.!!$R1 3849
2 TraesCS2B01G167800 chr2D 87745338 87750030 4692 True 835.833333 1698 88.155667 409 4611 6 chr2D.!!$R1 4202

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 297 0.179029 AGTCGGGGTTTTCACACTGG 60.179 55.0 0.00 0.0 32.81 4.00 F
1291 1719 0.247894 CGTGTTTGTGTTCGTGGTGG 60.248 55.0 0.00 0.0 0.00 4.61 F
1431 1862 0.537371 GTCCTTTCCACCACCACCAG 60.537 60.0 0.00 0.0 0.00 4.00 F
2466 2994 0.600782 GCAATGGTTGTTGCCACCAG 60.601 55.0 0.33 0.0 46.69 4.00 F
3248 4200 0.810031 ATTCCAGCCGATACGTGTGC 60.810 55.0 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1338 1767 0.248621 CGCCGAAATCAGCAATTCCC 60.249 55.0 0.0 0.0 0.00 3.97 R
3052 3588 0.684153 CTTGCATGGGTTGGGTAGGG 60.684 60.0 0.0 0.0 0.00 3.53 R
3277 4229 1.313812 AAGACGGGTAGGTCAGAGCG 61.314 60.0 0.0 0.0 39.42 5.03 R
3436 4398 0.035439 ATTCCCGCAAACAGACCGAT 60.035 50.0 0.0 0.0 0.00 4.18 R
4207 5230 0.179100 CGCCACGATCATTCCTGTCT 60.179 55.0 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.021390 GCAAGCGTGCCATAGTGAGT 61.021 55.000 14.16 0.00 45.68 3.41
57 58 1.066929 CATGCCTGGCAAGTTTAACCC 60.067 52.381 27.24 0.00 43.62 4.11
59 60 1.176619 GCCTGGCAAGTTTAACCCGT 61.177 55.000 15.17 0.00 0.00 5.28
62 63 1.287815 GGCAAGTTTAACCCGTGGC 59.712 57.895 0.00 0.00 0.00 5.01
102 103 1.989966 GAGACGAACGGGATCTCGCA 61.990 60.000 16.63 0.00 38.64 5.10
106 107 0.806102 CGAACGGGATCTCGCACAAT 60.806 55.000 16.63 0.00 0.00 2.71
110 111 1.493950 CGGGATCTCGCACAATGAGC 61.494 60.000 0.00 0.00 33.41 4.26
128 129 4.515404 GGCTACAGTAACAGGCGG 57.485 61.111 0.00 0.00 0.00 6.13
130 131 1.814169 GCTACAGTAACAGGCGGGC 60.814 63.158 0.00 0.00 0.00 6.13
131 132 1.153429 CTACAGTAACAGGCGGGCC 60.153 63.158 0.18 0.18 0.00 5.80
143 144 2.660552 CGGGCCCGTTAGCGTATG 60.661 66.667 36.64 3.38 36.15 2.39
149 150 1.267186 GCCCGTTAGCGTATGTTTTCG 60.267 52.381 0.00 0.00 36.15 3.46
177 179 1.136336 GGAGTAAAAACAGTGCGCTCG 60.136 52.381 9.73 4.32 0.00 5.03
181 183 0.517316 AAAAACAGTGCGCTCGATCC 59.483 50.000 9.73 0.00 0.00 3.36
189 191 2.569354 GCGCTCGATCCTGGGATCT 61.569 63.158 22.43 0.00 46.36 2.75
222 233 2.183478 AACCACTGCATCACGATCAA 57.817 45.000 0.00 0.00 0.00 2.57
223 234 2.408271 ACCACTGCATCACGATCAAT 57.592 45.000 0.00 0.00 0.00 2.57
227 238 3.127376 CCACTGCATCACGATCAATTTCA 59.873 43.478 0.00 0.00 0.00 2.69
228 239 4.093514 CACTGCATCACGATCAATTTCAC 58.906 43.478 0.00 0.00 0.00 3.18
232 243 4.201676 TGCATCACGATCAATTTCACGTAC 60.202 41.667 0.00 0.00 37.22 3.67
233 244 4.201676 GCATCACGATCAATTTCACGTACA 60.202 41.667 0.00 0.00 37.22 2.90
234 245 5.670094 GCATCACGATCAATTTCACGTACAA 60.670 40.000 0.00 0.00 37.22 2.41
235 246 6.477742 CATCACGATCAATTTCACGTACAAT 58.522 36.000 0.00 0.00 37.22 2.71
236 247 7.617557 CATCACGATCAATTTCACGTACAATA 58.382 34.615 0.00 0.00 37.22 1.90
237 248 6.985013 TCACGATCAATTTCACGTACAATAC 58.015 36.000 0.00 0.00 37.22 1.89
269 280 7.616313 CATGACTTACTAGAAGGGAAAAGAGT 58.384 38.462 0.00 0.00 0.00 3.24
284 295 1.129058 AGAGTCGGGGTTTTCACACT 58.871 50.000 0.00 0.00 0.00 3.55
286 297 0.179029 AGTCGGGGTTTTCACACTGG 60.179 55.000 0.00 0.00 32.81 4.00
555 572 6.013085 CGGTACATTTTTCGTATGTGTCAAG 58.987 40.000 0.00 0.00 36.89 3.02
723 770 8.901748 CAGTATTTTTCAAATACCTGTTCAACG 58.098 33.333 13.41 0.00 34.51 4.10
853 1051 8.593492 AAATAAAGCAAAAATCCAGAACAGAC 57.407 30.769 0.00 0.00 0.00 3.51
860 1058 6.237915 GCAAAAATCCAGAACAGACAACAAAG 60.238 38.462 0.00 0.00 0.00 2.77
863 1061 6.966534 AATCCAGAACAGACAACAAAGAAT 57.033 33.333 0.00 0.00 0.00 2.40
864 1062 8.463930 AAATCCAGAACAGACAACAAAGAATA 57.536 30.769 0.00 0.00 0.00 1.75
865 1063 8.463930 AATCCAGAACAGACAACAAAGAATAA 57.536 30.769 0.00 0.00 0.00 1.40
869 1067 9.533253 CCAGAACAGACAACAAAGAATAAAAAT 57.467 29.630 0.00 0.00 0.00 1.82
946 1218 4.415150 CCGTGCTGGCCCATCTGT 62.415 66.667 0.00 0.00 0.00 3.41
1291 1719 0.247894 CGTGTTTGTGTTCGTGGTGG 60.248 55.000 0.00 0.00 0.00 4.61
1431 1862 0.537371 GTCCTTTCCACCACCACCAG 60.537 60.000 0.00 0.00 0.00 4.00
1747 2214 5.779260 TGTCCAAAGAAAAATCCCATGATCA 59.221 36.000 0.00 0.00 0.00 2.92
1751 2218 6.935771 CCAAAGAAAAATCCCATGATCAACAA 59.064 34.615 0.00 0.00 0.00 2.83
1758 2225 7.910441 AAATCCCATGATCAACAAAATTGTC 57.090 32.000 0.00 0.00 41.31 3.18
1765 2232 6.926280 TGATCAACAAAATTGTCAATACGC 57.074 33.333 0.00 0.00 41.31 4.42
1833 2347 8.140112 AGTAGTGAAGATTGTTTGAGATAGGT 57.860 34.615 0.00 0.00 0.00 3.08
1834 2348 9.256228 AGTAGTGAAGATTGTTTGAGATAGGTA 57.744 33.333 0.00 0.00 0.00 3.08
1996 2514 4.732285 ACAGAAGTTGCAGTCAATAACG 57.268 40.909 0.00 0.00 34.29 3.18
2106 2624 8.036575 GGTACCAATATATGTTAGTTATCGGCA 58.963 37.037 7.15 0.00 0.00 5.69
2288 2812 1.375523 GGTGGAGAATGACGCCGTT 60.376 57.895 0.00 0.00 41.40 4.44
2322 2846 6.151817 GGCATTGAGAAAAGGTTCTGTTCTAT 59.848 38.462 0.76 0.00 44.42 1.98
2329 2853 8.794335 AGAAAAGGTTCTGTTCTATTATCACC 57.206 34.615 0.00 0.00 42.73 4.02
2334 2858 5.428253 GTTCTGTTCTATTATCACCTGGCA 58.572 41.667 0.00 0.00 0.00 4.92
2350 2874 3.571571 CTGGCATGATGTTTGACACTTG 58.428 45.455 0.00 0.00 0.00 3.16
2351 2875 2.288334 TGGCATGATGTTTGACACTTGC 60.288 45.455 0.00 0.00 33.74 4.01
2353 2877 2.605338 GCATGATGTTTGACACTTGCGT 60.605 45.455 0.00 0.00 0.00 5.24
2359 2883 2.863740 TGTTTGACACTTGCGTACTCAG 59.136 45.455 0.00 0.00 0.00 3.35
2366 2890 4.435425 ACACTTGCGTACTCAGTGTTTAA 58.565 39.130 13.14 0.00 40.30 1.52
2373 2897 4.743644 GCGTACTCAGTGTTTAACTTGTCT 59.256 41.667 0.00 0.00 36.83 3.41
2374 2898 5.332355 GCGTACTCAGTGTTTAACTTGTCTG 60.332 44.000 0.00 1.17 36.83 3.51
2388 2916 6.942532 AACTTGTCTGTTTTGAGCTATTGA 57.057 33.333 0.00 0.00 0.00 2.57
2410 2938 6.064060 TGATTTGTGTTCCTTCTGTTCTGAT 58.936 36.000 0.00 0.00 0.00 2.90
2418 2946 3.326006 TCCTTCTGTTCTGATGCTGAGTT 59.674 43.478 0.00 0.00 0.00 3.01
2419 2947 3.436015 CCTTCTGTTCTGATGCTGAGTTG 59.564 47.826 0.00 0.00 0.00 3.16
2420 2948 3.758755 TCTGTTCTGATGCTGAGTTGT 57.241 42.857 0.00 0.00 0.00 3.32
2421 2949 3.396560 TCTGTTCTGATGCTGAGTTGTG 58.603 45.455 0.00 0.00 0.00 3.33
2425 2953 1.973515 TCTGATGCTGAGTTGTGACCT 59.026 47.619 0.00 0.00 0.00 3.85
2427 2955 1.417517 TGATGCTGAGTTGTGACCTGT 59.582 47.619 0.00 0.00 0.00 4.00
2432 2960 3.070878 TGCTGAGTTGTGACCTGTCATAA 59.929 43.478 2.91 4.33 42.18 1.90
2435 2963 5.182001 GCTGAGTTGTGACCTGTCATAATTT 59.818 40.000 11.77 5.04 41.51 1.82
2466 2994 0.600782 GCAATGGTTGTTGCCACCAG 60.601 55.000 0.33 0.00 46.69 4.00
2488 3016 4.276926 AGCAGCTTCTTTTGTAGAAAGTGG 59.723 41.667 0.00 0.00 42.19 4.00
2553 3082 8.211030 ACATCATAGGTCATCATTCTCCAATA 57.789 34.615 0.00 0.00 0.00 1.90
2560 3089 6.100279 AGGTCATCATTCTCCAATAACTAGCA 59.900 38.462 0.00 0.00 0.00 3.49
2562 3091 7.283127 GGTCATCATTCTCCAATAACTAGCAAA 59.717 37.037 0.00 0.00 0.00 3.68
2564 3093 8.677300 TCATCATTCTCCAATAACTAGCAAAAC 58.323 33.333 0.00 0.00 0.00 2.43
2565 3094 7.391148 TCATTCTCCAATAACTAGCAAAACC 57.609 36.000 0.00 0.00 0.00 3.27
2594 3123 3.186119 CAAAACTGTCGGTGCAACAAAT 58.814 40.909 0.98 0.00 39.98 2.32
2605 3134 6.843779 GTCGGTGCAACAAATTGAATTTTTAC 59.156 34.615 0.98 0.00 39.98 2.01
2703 3233 2.608752 GCAACCTGAAGGACATTTGCAG 60.609 50.000 14.33 0.00 42.23 4.41
2787 3317 2.036733 GGTGGTTACAGACTACAGTGCA 59.963 50.000 0.00 0.00 41.17 4.57
2792 3322 5.656859 TGGTTACAGACTACAGTGCATAGAT 59.343 40.000 0.00 0.00 0.00 1.98
2795 3325 5.921962 ACAGACTACAGTGCATAGATTCA 57.078 39.130 0.00 0.00 0.00 2.57
2821 3351 4.763073 TCTCTCTAGAACAATGCCATGTG 58.237 43.478 0.00 0.00 32.81 3.21
2839 3369 7.013274 TGCCATGTGCCTAATTCTAATTTACTC 59.987 37.037 4.07 0.00 40.16 2.59
2898 3434 3.009301 ACTAGTTCTGTCGTTTGTCCG 57.991 47.619 0.00 0.00 0.00 4.79
2900 3436 2.304751 AGTTCTGTCGTTTGTCCGTT 57.695 45.000 0.00 0.00 0.00 4.44
2968 3504 3.502123 TTCCGTTTCCTTTCACCAGAT 57.498 42.857 0.00 0.00 0.00 2.90
3075 3611 2.342650 CCCAACCCATGCAAGGACG 61.343 63.158 10.18 0.00 0.00 4.79
3076 3612 2.342650 CCAACCCATGCAAGGACGG 61.343 63.158 10.18 6.85 0.00 4.79
3077 3613 1.303236 CAACCCATGCAAGGACGGA 60.303 57.895 10.18 0.00 0.00 4.69
3079 3615 2.825836 CCCATGCAAGGACGGAGC 60.826 66.667 10.18 0.00 0.00 4.70
3080 3616 3.197790 CCATGCAAGGACGGAGCG 61.198 66.667 0.35 0.00 0.00 5.03
3081 3617 3.869272 CATGCAAGGACGGAGCGC 61.869 66.667 0.00 0.00 0.00 5.92
3082 3618 4.087892 ATGCAAGGACGGAGCGCT 62.088 61.111 11.27 11.27 0.00 5.92
3120 4064 2.649331 GCAGATCATGTTGCTTGCTT 57.351 45.000 10.79 0.00 37.35 3.91
3121 4065 2.259618 GCAGATCATGTTGCTTGCTTG 58.740 47.619 10.79 0.00 37.35 4.01
3122 4066 2.259618 CAGATCATGTTGCTTGCTTGC 58.740 47.619 0.00 0.00 0.00 4.01
3141 4085 1.247567 CTGCTCTAGCCTCTAGCCTC 58.752 60.000 0.00 0.00 45.47 4.70
3202 4146 2.265589 AGACCCTAAACAACCGTTGG 57.734 50.000 15.60 0.00 34.86 3.77
3248 4200 0.810031 ATTCCAGCCGATACGTGTGC 60.810 55.000 0.00 0.00 0.00 4.57
3317 4269 2.095847 GTACCGGCGCGTGAATGAA 61.096 57.895 8.43 0.00 0.00 2.57
3436 4398 5.460416 TGGTGTGTGCTAGGGACTATATTA 58.540 41.667 0.00 0.00 41.70 0.98
3488 4450 6.020041 GGTTCGTGTCGAAGGTTATTCTTATC 60.020 42.308 4.84 0.00 46.54 1.75
3532 4494 4.337555 GGATCTGAGATGGTTTTCATGTGG 59.662 45.833 0.00 0.00 35.97 4.17
3599 4616 5.924356 TCCCATTTTCTCTGTCGCATAATA 58.076 37.500 0.00 0.00 0.00 0.98
3604 4621 9.208022 CCATTTTCTCTGTCGCATAATATAAGA 57.792 33.333 0.00 0.00 0.00 2.10
3607 4624 6.575162 TCTCTGTCGCATAATATAAGAGCA 57.425 37.500 0.00 0.00 31.76 4.26
3660 4678 7.110216 CGTGCATAATATAAGAGCGTTTTTGAC 59.890 37.037 0.00 0.00 0.00 3.18
3662 4680 8.122330 TGCATAATATAAGAGCGTTTTTGACAG 58.878 33.333 0.00 0.00 0.00 3.51
3663 4681 8.335356 GCATAATATAAGAGCGTTTTTGACAGA 58.665 33.333 0.00 0.00 0.00 3.41
3668 4686 2.365617 AGAGCGTTTTTGACAGAGAGGA 59.634 45.455 0.00 0.00 0.00 3.71
3671 4689 4.894784 AGCGTTTTTGACAGAGAGGATAA 58.105 39.130 0.00 0.00 0.00 1.75
3688 4706 9.770097 GAGAGGATAACAAAGTCATCATATTCA 57.230 33.333 0.00 0.00 0.00 2.57
3691 4709 9.685276 AGGATAACAAAGTCATCATATTCACAA 57.315 29.630 0.00 0.00 0.00 3.33
3716 4736 6.494835 ACCTCTTCATAATTTTTGAAGGCTGT 59.505 34.615 21.72 15.68 46.50 4.40
3732 4754 0.167470 CTGTGGAGATGCGCAAACAG 59.833 55.000 17.11 18.51 0.00 3.16
3885 4907 9.463443 GTTGAGCCAATATTATTACAAACCATC 57.537 33.333 0.00 0.00 0.00 3.51
3886 4908 8.759481 TGAGCCAATATTATTACAAACCATCA 57.241 30.769 0.00 0.00 0.00 3.07
3887 4909 9.365906 TGAGCCAATATTATTACAAACCATCAT 57.634 29.630 0.00 0.00 0.00 2.45
3888 4910 9.630098 GAGCCAATATTATTACAAACCATCATG 57.370 33.333 0.00 0.00 0.00 3.07
3889 4911 8.587608 AGCCAATATTATTACAAACCATCATGG 58.412 33.333 0.54 0.54 45.02 3.66
3890 4912 8.584157 GCCAATATTATTACAAACCATCATGGA 58.416 33.333 11.90 0.00 40.96 3.41
3893 4915 6.655078 ATTATTACAAACCATCATGGAGGC 57.345 37.500 11.90 0.00 40.96 4.70
3894 4916 3.448093 TTACAAACCATCATGGAGGCA 57.552 42.857 11.90 0.00 40.96 4.75
3895 4917 1.843368 ACAAACCATCATGGAGGCAG 58.157 50.000 11.90 0.00 40.96 4.85
3896 4918 1.076024 ACAAACCATCATGGAGGCAGT 59.924 47.619 11.90 0.00 40.96 4.40
3897 4919 1.475280 CAAACCATCATGGAGGCAGTG 59.525 52.381 11.90 0.00 40.96 3.66
3898 4920 0.033796 AACCATCATGGAGGCAGTGG 60.034 55.000 11.90 0.00 40.96 4.00
3899 4921 1.826921 CCATCATGGAGGCAGTGGC 60.827 63.158 9.02 9.02 40.96 5.01
3900 4922 2.184830 CATCATGGAGGCAGTGGCG 61.185 63.158 11.51 0.00 42.47 5.69
3901 4923 3.411114 ATCATGGAGGCAGTGGCGG 62.411 63.158 11.51 0.34 42.47 6.13
3902 4924 4.100084 CATGGAGGCAGTGGCGGA 62.100 66.667 11.51 0.00 42.47 5.54
3903 4925 3.790437 ATGGAGGCAGTGGCGGAG 61.790 66.667 11.51 0.00 42.47 4.63
3926 4948 3.106054 CAGGATATCTGGATGAGGAGGG 58.894 54.545 2.05 0.00 39.76 4.30
3927 4949 1.836802 GGATATCTGGATGAGGAGGGC 59.163 57.143 2.05 0.00 0.00 5.19
3928 4950 1.836802 GATATCTGGATGAGGAGGGCC 59.163 57.143 0.00 0.00 0.00 5.80
3929 4951 0.542938 TATCTGGATGAGGAGGGCCG 60.543 60.000 0.00 0.00 39.96 6.13
3930 4952 2.317992 ATCTGGATGAGGAGGGCCGA 62.318 60.000 0.00 0.00 39.96 5.54
3931 4953 2.444706 TGGATGAGGAGGGCCGAG 60.445 66.667 0.00 0.00 39.96 4.63
3932 4954 3.934962 GGATGAGGAGGGCCGAGC 61.935 72.222 0.00 0.00 39.96 5.03
3933 4955 4.292178 GATGAGGAGGGCCGAGCG 62.292 72.222 0.00 0.00 39.96 5.03
3936 4958 4.516195 GAGGAGGGCCGAGCGTTC 62.516 72.222 0.00 0.00 39.96 3.95
3938 4960 4.083862 GGAGGGCCGAGCGTTCTT 62.084 66.667 0.00 0.00 0.00 2.52
3939 4961 2.718073 GGAGGGCCGAGCGTTCTTA 61.718 63.158 0.00 0.00 0.00 2.10
3940 4962 1.217244 GAGGGCCGAGCGTTCTTAA 59.783 57.895 0.00 0.00 0.00 1.85
3941 4963 1.079336 AGGGCCGAGCGTTCTTAAC 60.079 57.895 0.00 0.00 0.00 2.01
3942 4964 1.079336 GGGCCGAGCGTTCTTAACT 60.079 57.895 0.00 0.00 0.00 2.24
3943 4965 1.082679 GGGCCGAGCGTTCTTAACTC 61.083 60.000 0.00 0.00 0.00 3.01
3944 4966 0.108756 GGCCGAGCGTTCTTAACTCT 60.109 55.000 0.00 0.00 0.00 3.24
3945 4967 1.672145 GGCCGAGCGTTCTTAACTCTT 60.672 52.381 0.00 0.00 0.00 2.85
3946 4968 1.390463 GCCGAGCGTTCTTAACTCTTG 59.610 52.381 0.00 0.00 0.00 3.02
3947 4969 2.673833 CCGAGCGTTCTTAACTCTTGT 58.326 47.619 0.00 0.00 0.00 3.16
3948 4970 3.057734 CCGAGCGTTCTTAACTCTTGTT 58.942 45.455 0.00 0.00 39.98 2.83
3949 4971 3.120991 CCGAGCGTTCTTAACTCTTGTTG 60.121 47.826 0.00 0.00 37.59 3.33
3950 4972 3.120991 CGAGCGTTCTTAACTCTTGTTGG 60.121 47.826 0.00 0.00 37.59 3.77
3951 4973 4.056050 GAGCGTTCTTAACTCTTGTTGGA 58.944 43.478 0.00 0.00 37.59 3.53
3952 4974 4.058817 AGCGTTCTTAACTCTTGTTGGAG 58.941 43.478 0.00 0.00 37.59 3.86
3953 4975 4.056050 GCGTTCTTAACTCTTGTTGGAGA 58.944 43.478 0.00 0.00 37.59 3.71
3954 4976 4.150804 GCGTTCTTAACTCTTGTTGGAGAG 59.849 45.833 0.60 0.60 46.82 3.20
3955 4977 4.686554 CGTTCTTAACTCTTGTTGGAGAGG 59.313 45.833 6.82 0.00 45.93 3.69
3956 4978 4.891992 TCTTAACTCTTGTTGGAGAGGG 57.108 45.455 6.82 0.00 45.93 4.30
3957 4979 3.008049 TCTTAACTCTTGTTGGAGAGGGC 59.992 47.826 6.82 0.00 45.93 5.19
3958 4980 0.402121 AACTCTTGTTGGAGAGGGCC 59.598 55.000 0.00 0.00 45.93 5.80
3959 4981 0.768221 ACTCTTGTTGGAGAGGGCCA 60.768 55.000 6.18 0.00 45.93 5.36
3960 4982 0.622665 CTCTTGTTGGAGAGGGCCAT 59.377 55.000 6.18 0.00 39.58 4.40
3961 4983 1.005215 CTCTTGTTGGAGAGGGCCATT 59.995 52.381 6.18 0.00 39.58 3.16
3962 4984 1.004745 TCTTGTTGGAGAGGGCCATTC 59.995 52.381 6.18 0.81 37.86 2.67
3963 4985 0.039618 TTGTTGGAGAGGGCCATTCC 59.960 55.000 16.90 16.90 37.86 3.01
3964 4986 1.139498 TGTTGGAGAGGGCCATTCCA 61.139 55.000 21.10 21.10 39.16 3.53
3965 4987 0.259938 GTTGGAGAGGGCCATTCCAT 59.740 55.000 24.23 0.00 40.48 3.41
3966 4988 0.552848 TTGGAGAGGGCCATTCCATC 59.447 55.000 24.23 5.08 45.70 3.51
3973 4995 4.590850 GAGGGCCATTCCATCAAAATAC 57.409 45.455 6.18 0.00 44.75 1.89
3974 4996 3.960102 GAGGGCCATTCCATCAAAATACA 59.040 43.478 6.18 0.00 44.75 2.29
3975 4997 3.706086 AGGGCCATTCCATCAAAATACAC 59.294 43.478 6.18 0.00 36.21 2.90
3976 4998 3.181466 GGGCCATTCCATCAAAATACACC 60.181 47.826 4.39 0.00 36.21 4.16
3977 4999 3.450457 GGCCATTCCATCAAAATACACCA 59.550 43.478 0.00 0.00 34.01 4.17
3978 5000 4.101430 GGCCATTCCATCAAAATACACCAT 59.899 41.667 0.00 0.00 34.01 3.55
3979 5001 5.396660 GGCCATTCCATCAAAATACACCATT 60.397 40.000 0.00 0.00 34.01 3.16
3980 5002 6.114767 GCCATTCCATCAAAATACACCATTT 58.885 36.000 0.00 0.00 38.54 2.32
3981 5003 6.598850 GCCATTCCATCAAAATACACCATTTT 59.401 34.615 0.00 0.00 45.72 1.82
3982 5004 7.768120 GCCATTCCATCAAAATACACCATTTTA 59.232 33.333 0.00 0.00 43.51 1.52
3983 5005 9.664332 CCATTCCATCAAAATACACCATTTTAA 57.336 29.630 0.00 0.00 43.51 1.52
3988 5010 9.814899 CCATCAAAATACACCATTTTAATAGCA 57.185 29.630 0.00 0.00 43.51 3.49
4017 5039 7.849804 AATCAGTGTTTACATTAGTGCTAGG 57.150 36.000 0.00 0.00 0.00 3.02
4018 5040 5.175859 TCAGTGTTTACATTAGTGCTAGGC 58.824 41.667 0.00 0.00 0.00 3.93
4019 5041 4.332819 CAGTGTTTACATTAGTGCTAGGCC 59.667 45.833 0.00 0.00 0.00 5.19
4020 5042 4.225267 AGTGTTTACATTAGTGCTAGGCCT 59.775 41.667 11.78 11.78 0.00 5.19
4021 5043 5.424252 AGTGTTTACATTAGTGCTAGGCCTA 59.576 40.000 13.09 13.09 0.00 3.93
4022 5044 6.070424 AGTGTTTACATTAGTGCTAGGCCTAA 60.070 38.462 14.85 0.00 0.00 2.69
4023 5045 6.596497 GTGTTTACATTAGTGCTAGGCCTAAA 59.404 38.462 14.85 5.03 30.06 1.85
4024 5046 7.282450 GTGTTTACATTAGTGCTAGGCCTAAAT 59.718 37.037 14.85 7.37 30.06 1.40
4025 5047 7.832187 TGTTTACATTAGTGCTAGGCCTAAATT 59.168 33.333 14.85 4.73 30.06 1.82
4026 5048 9.333724 GTTTACATTAGTGCTAGGCCTAAATTA 57.666 33.333 14.85 3.73 30.06 1.40
4027 5049 9.555727 TTTACATTAGTGCTAGGCCTAAATTAG 57.444 33.333 14.85 4.31 30.06 1.73
4028 5050 7.138054 ACATTAGTGCTAGGCCTAAATTAGT 57.862 36.000 14.85 5.95 30.06 2.24
4029 5051 6.992715 ACATTAGTGCTAGGCCTAAATTAGTG 59.007 38.462 14.85 14.14 30.06 2.74
4030 5052 6.801718 TTAGTGCTAGGCCTAAATTAGTGA 57.198 37.500 14.85 0.00 0.00 3.41
4031 5053 5.024785 AGTGCTAGGCCTAAATTAGTGAC 57.975 43.478 14.85 4.99 0.00 3.67
4032 5054 4.469945 AGTGCTAGGCCTAAATTAGTGACA 59.530 41.667 14.85 0.62 0.00 3.58
4033 5055 5.131142 AGTGCTAGGCCTAAATTAGTGACAT 59.869 40.000 14.85 0.00 0.00 3.06
4034 5056 5.823045 GTGCTAGGCCTAAATTAGTGACATT 59.177 40.000 14.85 0.00 0.00 2.71
4035 5057 6.990349 GTGCTAGGCCTAAATTAGTGACATTA 59.010 38.462 14.85 0.00 0.00 1.90
4036 5058 7.171678 GTGCTAGGCCTAAATTAGTGACATTAG 59.828 40.741 14.85 0.00 0.00 1.73
4037 5059 7.147549 TGCTAGGCCTAAATTAGTGACATTAGT 60.148 37.037 14.85 0.00 0.00 2.24
4038 5060 7.171678 GCTAGGCCTAAATTAGTGACATTAGTG 59.828 40.741 14.85 0.00 0.00 2.74
4039 5061 6.357367 AGGCCTAAATTAGTGACATTAGTGG 58.643 40.000 1.29 0.00 0.00 4.00
4040 5062 5.531287 GGCCTAAATTAGTGACATTAGTGGG 59.469 44.000 0.00 0.00 0.00 4.61
4041 5063 5.531287 GCCTAAATTAGTGACATTAGTGGGG 59.469 44.000 0.00 0.00 0.00 4.96
4042 5064 6.062095 CCTAAATTAGTGACATTAGTGGGGG 58.938 44.000 0.00 0.00 0.00 5.40
4063 5085 3.424105 GGGGGCAGGATCCTTGCT 61.424 66.667 25.57 1.23 0.00 3.91
4064 5086 2.123982 GGGGCAGGATCCTTGCTG 60.124 66.667 25.57 13.40 43.66 4.41
4065 5087 2.123982 GGGCAGGATCCTTGCTGG 60.124 66.667 25.57 12.37 41.31 4.85
4066 5088 2.679716 GGCAGGATCCTTGCTGGT 59.320 61.111 25.57 0.00 41.31 4.00
4067 5089 1.452833 GGCAGGATCCTTGCTGGTC 60.453 63.158 25.57 9.82 41.31 4.02
4068 5090 1.452833 GCAGGATCCTTGCTGGTCC 60.453 63.158 13.00 8.62 41.31 4.46
4069 5091 1.225704 CAGGATCCTTGCTGGTCCC 59.774 63.158 13.00 7.48 37.63 4.46
4070 5092 2.003548 AGGATCCTTGCTGGTCCCC 61.004 63.158 9.02 0.00 36.98 4.81
4071 5093 2.597903 GATCCTTGCTGGTCCCCC 59.402 66.667 0.00 0.00 37.07 5.40
4072 5094 3.406595 GATCCTTGCTGGTCCCCCG 62.407 68.421 0.00 0.00 37.07 5.73
4129 5151 2.266055 GTTGTCCGGGAGCAGAGG 59.734 66.667 0.00 0.00 0.00 3.69
4196 5219 1.002033 GAATGCGCATCCAGGAATGTC 60.002 52.381 25.53 10.33 0.00 3.06
4197 5220 0.820891 ATGCGCATCCAGGAATGTCC 60.821 55.000 19.28 0.00 36.58 4.02
4198 5221 2.537560 GCGCATCCAGGAATGTCCG 61.538 63.158 0.30 0.00 42.75 4.79
4199 5222 1.153369 CGCATCCAGGAATGTCCGT 60.153 57.895 0.00 0.00 42.75 4.69
4200 5223 1.431488 CGCATCCAGGAATGTCCGTG 61.431 60.000 0.00 0.00 42.75 4.94
4201 5224 1.097547 GCATCCAGGAATGTCCGTGG 61.098 60.000 0.00 0.00 42.75 4.94
4202 5225 1.097547 CATCCAGGAATGTCCGTGGC 61.098 60.000 0.00 0.00 42.75 5.01
4203 5226 2.593468 ATCCAGGAATGTCCGTGGCG 62.593 60.000 0.00 0.00 42.75 5.69
4204 5227 3.499737 CAGGAATGTCCGTGGCGC 61.500 66.667 0.00 0.00 42.75 6.53
4205 5228 4.778143 AGGAATGTCCGTGGCGCC 62.778 66.667 22.73 22.73 42.75 6.53
4207 5230 3.053291 GAATGTCCGTGGCGCCAA 61.053 61.111 34.66 16.88 0.00 4.52
4208 5231 3.039202 GAATGTCCGTGGCGCCAAG 62.039 63.158 34.66 33.28 0.00 3.61
4209 5232 3.545124 AATGTCCGTGGCGCCAAGA 62.545 57.895 38.88 30.77 0.00 3.02
4210 5233 4.980805 TGTCCGTGGCGCCAAGAC 62.981 66.667 36.64 36.64 34.19 3.01
4211 5234 4.980805 GTCCGTGGCGCCAAGACA 62.981 66.667 37.50 25.51 33.94 3.41
4212 5235 4.680237 TCCGTGGCGCCAAGACAG 62.680 66.667 38.88 24.22 39.56 3.51
4214 5237 4.680237 CGTGGCGCCAAGACAGGA 62.680 66.667 35.10 5.48 46.23 3.86
4215 5238 2.281484 GTGGCGCCAAGACAGGAA 60.281 61.111 34.66 0.58 39.56 3.36
4216 5239 1.675641 GTGGCGCCAAGACAGGAAT 60.676 57.895 34.66 0.00 39.56 3.01
4217 5240 1.675310 TGGCGCCAAGACAGGAATG 60.675 57.895 30.74 0.00 31.44 2.67
4218 5241 1.377202 GGCGCCAAGACAGGAATGA 60.377 57.895 24.80 0.00 0.00 2.57
4222 5245 1.740380 CGCCAAGACAGGAATGATCGT 60.740 52.381 0.00 0.00 0.00 3.73
4299 5327 2.100991 GCTTGCGGGCTCGATTTG 59.899 61.111 12.03 0.00 39.00 2.32
4348 5383 4.263018 TGATTATTCTGCTAGATGCGCT 57.737 40.909 9.73 0.00 46.63 5.92
4349 5384 4.635223 TGATTATTCTGCTAGATGCGCTT 58.365 39.130 9.73 0.55 46.63 4.68
4353 5388 3.747099 TTCTGCTAGATGCGCTTTTTC 57.253 42.857 9.73 0.13 46.63 2.29
4354 5389 2.698803 TCTGCTAGATGCGCTTTTTCA 58.301 42.857 9.73 0.00 46.63 2.69
4371 5406 6.620089 GCTTTTTCAACCAGAATCGTAGTACC 60.620 42.308 0.00 0.00 35.83 3.34
4380 5415 1.388547 ATCGTAGTACCGGCGGTTAA 58.611 50.000 38.73 18.52 37.09 2.01
4387 5422 1.047596 TACCGGCGGTTAATAGGGCA 61.048 55.000 38.73 13.24 37.09 5.36
4430 5465 6.214191 TCTCCTAGAGTTGCATTTAGACAG 57.786 41.667 0.00 0.00 0.00 3.51
4441 5476 9.182214 AGTTGCATTTAGACAGACAATATCATT 57.818 29.630 0.00 0.00 0.00 2.57
4442 5477 9.229784 GTTGCATTTAGACAGACAATATCATTG 57.770 33.333 0.00 0.00 0.00 2.82
4443 5478 8.735692 TGCATTTAGACAGACAATATCATTGA 57.264 30.769 5.92 0.00 0.00 2.57
4444 5479 9.346005 TGCATTTAGACAGACAATATCATTGAT 57.654 29.630 4.28 4.28 0.00 2.57
4543 5596 0.038166 ATGCTCACCCCAATGAACGT 59.962 50.000 0.00 0.00 0.00 3.99
4549 5602 0.539438 ACCCCAATGAACGTGCACAT 60.539 50.000 18.64 4.50 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.181367 GCTTGCTACATGCGCTGT 58.819 55.556 9.73 13.16 46.63 4.40
18 19 1.026718 GGCACCACTCACTATGGCAC 61.027 60.000 0.00 0.00 41.31 5.01
25 26 2.034687 GGCATGGCACCACTCACT 59.965 61.111 15.47 0.00 0.00 3.41
48 49 0.968405 TAGACGCCACGGGTTAAACT 59.032 50.000 0.00 0.00 0.00 2.66
54 55 0.175073 GAGAAATAGACGCCACGGGT 59.825 55.000 0.00 0.00 0.00 5.28
57 58 1.917921 GCGAGAAATAGACGCCACG 59.082 57.895 0.00 0.00 45.35 4.94
88 89 0.652592 CATTGTGCGAGATCCCGTTC 59.347 55.000 0.00 0.00 0.00 3.95
100 101 1.021390 ACTGTAGCCGCTCATTGTGC 61.021 55.000 0.00 0.60 0.00 4.57
102 103 2.028476 TGTTACTGTAGCCGCTCATTGT 60.028 45.455 0.00 0.00 0.00 2.71
106 107 0.530744 CCTGTTACTGTAGCCGCTCA 59.469 55.000 0.00 0.00 0.00 4.26
110 111 1.518572 CCGCCTGTTACTGTAGCCG 60.519 63.158 0.00 0.00 0.00 5.52
112 113 1.814169 GCCCGCCTGTTACTGTAGC 60.814 63.158 0.00 0.00 0.00 3.58
127 128 0.745486 AAACATACGCTAACGGGCCC 60.745 55.000 13.57 13.57 46.04 5.80
128 129 1.063027 GAAAACATACGCTAACGGGCC 59.937 52.381 0.00 0.00 46.04 5.80
130 131 1.325338 CCGAAAACATACGCTAACGGG 59.675 52.381 0.00 0.00 46.04 5.28
131 132 2.261345 TCCGAAAACATACGCTAACGG 58.739 47.619 0.00 0.00 46.04 4.44
143 144 8.187354 TGTTTTTACTCCATTTTTCCGAAAAC 57.813 30.769 5.77 0.00 37.56 2.43
149 150 5.174943 CGCACTGTTTTTACTCCATTTTTCC 59.825 40.000 0.00 0.00 0.00 3.13
181 183 1.579698 CAGTGCATCGAAGATCCCAG 58.420 55.000 0.00 0.00 45.12 4.45
189 191 1.001974 AGTGGTTAGCAGTGCATCGAA 59.998 47.619 19.20 2.73 0.00 3.71
232 243 4.945246 AGTAAGTCATGCCCTACGTATTG 58.055 43.478 0.00 0.00 0.00 1.90
233 244 6.066690 TCTAGTAAGTCATGCCCTACGTATT 58.933 40.000 0.00 0.00 0.00 1.89
234 245 5.628130 TCTAGTAAGTCATGCCCTACGTAT 58.372 41.667 0.00 0.00 0.00 3.06
235 246 5.039920 TCTAGTAAGTCATGCCCTACGTA 57.960 43.478 0.00 0.00 0.00 3.57
236 247 3.894759 TCTAGTAAGTCATGCCCTACGT 58.105 45.455 0.00 0.00 0.00 3.57
237 248 4.261656 CCTTCTAGTAAGTCATGCCCTACG 60.262 50.000 0.00 0.00 0.00 3.51
238 249 4.039366 CCCTTCTAGTAAGTCATGCCCTAC 59.961 50.000 0.00 0.00 0.00 3.18
239 250 4.078805 TCCCTTCTAGTAAGTCATGCCCTA 60.079 45.833 0.00 0.00 0.00 3.53
240 251 3.041946 CCCTTCTAGTAAGTCATGCCCT 58.958 50.000 0.00 0.00 0.00 5.19
241 252 3.039011 TCCCTTCTAGTAAGTCATGCCC 58.961 50.000 0.00 0.00 0.00 5.36
242 253 4.755266 TTCCCTTCTAGTAAGTCATGCC 57.245 45.455 0.00 0.00 0.00 4.40
243 254 6.407202 TCTTTTCCCTTCTAGTAAGTCATGC 58.593 40.000 0.00 0.00 0.00 4.06
269 280 0.179040 GACCAGTGTGAAAACCCCGA 60.179 55.000 0.00 0.00 0.00 5.14
511 528 3.923461 CCGTGAAAGCAAAAGACAAACAA 59.077 39.130 0.00 0.00 0.00 2.83
517 534 3.955771 TGTACCGTGAAAGCAAAAGAC 57.044 42.857 0.00 0.00 0.00 3.01
518 535 5.508200 AAATGTACCGTGAAAGCAAAAGA 57.492 34.783 0.00 0.00 0.00 2.52
519 536 6.559521 CGAAAAATGTACCGTGAAAGCAAAAG 60.560 38.462 0.00 0.00 0.00 2.27
525 542 6.518395 CACATACGAAAAATGTACCGTGAAAG 59.482 38.462 0.00 0.00 35.82 2.62
591 608 4.992688 AGCGTTCAAACAATCTTGAAACA 58.007 34.783 0.60 0.00 44.66 2.83
599 616 5.457140 TGTTGGATAAGCGTTCAAACAATC 58.543 37.500 4.64 0.00 34.79 2.67
697 744 8.901748 CGTTGAACAGGTATTTGAAAAATACTG 58.098 33.333 17.75 15.74 34.44 2.74
699 746 8.791355 ACGTTGAACAGGTATTTGAAAAATAC 57.209 30.769 12.41 12.41 33.51 1.89
946 1218 1.377202 GCCGCAGATCAAACCTGGA 60.377 57.895 0.00 0.00 32.51 3.86
1165 1444 1.658686 GAGACGCACCTGTCCGATCT 61.659 60.000 0.00 0.00 39.77 2.75
1192 1471 1.813753 GCTGTTAGATTCGCCCGCA 60.814 57.895 0.00 0.00 0.00 5.69
1236 1664 1.226018 GAGCAATTTCCGCCGTTCG 60.226 57.895 0.00 0.00 38.08 3.95
1263 1691 2.169832 ACACAAACACGCTAGATGCT 57.830 45.000 0.00 0.00 40.11 3.79
1291 1719 2.854805 GCCTCGCGGAATAATTTTCAGC 60.855 50.000 6.13 12.11 36.51 4.26
1338 1767 0.248621 CGCCGAAATCAGCAATTCCC 60.249 55.000 0.00 0.00 0.00 3.97
1356 1785 3.078837 ACAAACAAATAGTACAGGCCCG 58.921 45.455 0.00 0.00 0.00 6.13
1358 1787 8.051901 AGATAAACAAACAAATAGTACAGGCC 57.948 34.615 0.00 0.00 0.00 5.19
1388 1819 6.012508 ACTGATTCCCCTGAAGACTGAATTTA 60.013 38.462 0.00 0.00 33.05 1.40
1461 1901 2.200081 AGGTATGCCAGGATGAACACT 58.800 47.619 1.54 0.00 39.69 3.55
1567 2031 7.166473 GCAAAATCCTTAAGATGTTATTGAGCG 59.834 37.037 3.36 0.00 34.56 5.03
1747 2214 8.132362 TCTTAACAGCGTATTGACAATTTTGTT 58.868 29.630 5.89 13.06 42.43 2.83
1751 2218 6.304126 CGTCTTAACAGCGTATTGACAATTT 58.696 36.000 5.89 0.00 0.00 1.82
1758 2225 3.715618 TTGCGTCTTAACAGCGTATTG 57.284 42.857 0.00 0.00 0.00 1.90
1765 2232 9.855361 CATTATCTAAGATTTGCGTCTTAACAG 57.145 33.333 7.25 0.27 39.49 3.16
1833 2347 4.508405 GCCAAGGGGGATAACATGCTTATA 60.508 45.833 0.00 0.00 40.01 0.98
1834 2348 3.755155 GCCAAGGGGGATAACATGCTTAT 60.755 47.826 0.00 0.00 40.01 1.73
1996 2514 2.438392 CTGGTTATTAGGAGGGTGGTCC 59.562 54.545 0.00 0.00 36.79 4.46
2106 2624 7.225427 CTGTCAACAGTAGGCAAATGTGCTT 62.225 44.000 8.02 2.03 43.44 3.91
2126 2644 6.258947 GCCTACAGAACATAATTTCCTCTGTC 59.741 42.308 12.64 1.00 44.22 3.51
2322 2846 4.398988 GTCAAACATCATGCCAGGTGATAA 59.601 41.667 0.00 0.00 34.68 1.75
2329 2853 3.571571 CAAGTGTCAAACATCATGCCAG 58.428 45.455 0.00 0.00 0.00 4.85
2350 2874 4.743644 AGACAAGTTAAACACTGAGTACGC 59.256 41.667 0.00 0.00 35.12 4.42
2351 2875 5.747197 ACAGACAAGTTAAACACTGAGTACG 59.253 40.000 0.00 0.00 35.12 3.67
2353 2877 8.447833 CAAAACAGACAAGTTAAACACTGAGTA 58.552 33.333 0.00 0.00 35.12 2.59
2359 2883 6.322491 AGCTCAAAACAGACAAGTTAAACAC 58.678 36.000 0.00 0.00 0.00 3.32
2366 2890 7.516198 AATCAATAGCTCAAAACAGACAAGT 57.484 32.000 0.00 0.00 0.00 3.16
2373 2897 6.922957 GGAACACAAATCAATAGCTCAAAACA 59.077 34.615 0.00 0.00 0.00 2.83
2374 2898 7.147976 AGGAACACAAATCAATAGCTCAAAAC 58.852 34.615 0.00 0.00 0.00 2.43
2388 2916 5.278660 GCATCAGAACAGAAGGAACACAAAT 60.279 40.000 0.00 0.00 0.00 2.32
2410 2938 0.829990 TGACAGGTCACAACTCAGCA 59.170 50.000 0.00 0.00 34.14 4.41
2418 2946 9.258826 CAAAAATGAAAATTATGACAGGTCACA 57.741 29.630 3.92 0.00 43.11 3.58
2419 2947 9.260002 ACAAAAATGAAAATTATGACAGGTCAC 57.740 29.630 3.92 0.00 43.11 3.67
2432 2960 8.449251 ACAACCATTGCTACAAAAATGAAAAT 57.551 26.923 0.00 0.00 36.13 1.82
2435 2963 7.244166 CAACAACCATTGCTACAAAAATGAA 57.756 32.000 0.00 0.00 36.13 2.57
2466 2994 4.540824 CCACTTTCTACAAAAGAAGCTGC 58.459 43.478 4.64 0.00 44.95 5.25
2468 2996 4.464947 AGCCACTTTCTACAAAAGAAGCT 58.535 39.130 4.64 8.35 44.95 3.74
2524 3052 7.095910 GGAGAATGATGACCTATGATGTACTG 58.904 42.308 0.00 0.00 0.00 2.74
2553 3082 8.246908 GTTTTGTAAAACAGGTTTTGCTAGTT 57.753 30.769 20.81 0.00 45.72 2.24
2594 3123 8.181904 AGAGCAAGAAGGATGTAAAAATTCAA 57.818 30.769 0.00 0.00 0.00 2.69
2605 3134 7.768120 ACAAGTTAATAGAGAGCAAGAAGGATG 59.232 37.037 0.00 0.00 0.00 3.51
2679 3208 3.555586 GCAAATGTCCTTCAGGTTGCATT 60.556 43.478 12.00 9.37 43.95 3.56
2703 3233 4.438744 GCATGGTATTTACAGGCAGACAAC 60.439 45.833 0.00 0.00 44.29 3.32
2816 3346 9.941664 CAAGAGTAAATTAGAATTAGGCACATG 57.058 33.333 0.00 0.00 0.00 3.21
2839 3369 9.143631 GAATTACAAATCACCATCCTTTTCAAG 57.856 33.333 0.00 0.00 0.00 3.02
2898 3434 3.610585 CGCAGCAGCTATAGAGGAGTAAC 60.611 52.174 3.21 0.00 39.10 2.50
2900 3436 2.155279 CGCAGCAGCTATAGAGGAGTA 58.845 52.381 3.21 0.00 39.10 2.59
2968 3504 1.808945 GACACCTCCTCGAACTCGTTA 59.191 52.381 0.00 0.00 40.80 3.18
3052 3588 0.684153 CTTGCATGGGTTGGGTAGGG 60.684 60.000 0.00 0.00 0.00 3.53
3062 3598 2.825836 GCTCCGTCCTTGCATGGG 60.826 66.667 17.95 9.17 0.00 4.00
3083 3619 4.388499 TTCGGGGAAGCCGCTGAC 62.388 66.667 0.00 0.00 39.89 3.51
3084 3620 4.082523 CTTCGGGGAAGCCGCTGA 62.083 66.667 0.00 0.00 38.64 4.26
3096 3632 1.376543 AGCAACATGATCTGCTTCGG 58.623 50.000 13.51 0.00 46.71 4.30
3141 4085 1.662629 CACAAGCGAGCAACATCCTAG 59.337 52.381 0.00 0.00 0.00 3.02
3202 4146 5.118286 CAAATCCAAACTAAATGCCATCCC 58.882 41.667 0.00 0.00 0.00 3.85
3277 4229 1.313812 AAGACGGGTAGGTCAGAGCG 61.314 60.000 0.00 0.00 39.42 5.03
3323 4275 2.592861 GGATCTCGCCACCCATGC 60.593 66.667 0.00 0.00 0.00 4.06
3436 4398 0.035439 ATTCCCGCAAACAGACCGAT 60.035 50.000 0.00 0.00 0.00 4.18
3488 4450 1.269448 ACATAAACAGCAACGGCAAGG 59.731 47.619 0.00 0.00 44.61 3.61
3532 4494 1.129437 GAAAATGCACGCTCCAGAGTC 59.871 52.381 0.00 0.00 0.00 3.36
3607 4624 4.332828 GAGTAGTTTGTAAGGGCATGGTT 58.667 43.478 0.00 0.00 0.00 3.67
3660 4678 9.775854 AATATGATGACTTTGTTATCCTCTCTG 57.224 33.333 0.00 0.00 29.16 3.35
3662 4680 9.770097 TGAATATGATGACTTTGTTATCCTCTC 57.230 33.333 0.00 0.00 29.16 3.20
3663 4681 9.553064 GTGAATATGATGACTTTGTTATCCTCT 57.447 33.333 0.00 0.00 29.16 3.69
3668 4686 9.466497 AGGTTGTGAATATGATGACTTTGTTAT 57.534 29.630 0.00 0.00 0.00 1.89
3671 4689 7.170965 AGAGGTTGTGAATATGATGACTTTGT 58.829 34.615 0.00 0.00 0.00 2.83
3708 4726 2.467826 GCGCATCTCCACAGCCTTC 61.468 63.158 0.30 0.00 0.00 3.46
3716 4736 0.674581 CCTCTGTTTGCGCATCTCCA 60.675 55.000 12.75 4.71 0.00 3.86
3732 4754 1.859080 GAACGCATTATGTCGACCCTC 59.141 52.381 14.12 0.00 0.00 4.30
3842 4864 7.826690 TGGCTCAACCATTCTTTATTTTAGTC 58.173 34.615 0.00 0.00 46.36 2.59
3885 4907 4.100084 TCCGCCACTGCCTCCATG 62.100 66.667 0.00 0.00 0.00 3.66
3886 4908 3.790437 CTCCGCCACTGCCTCCAT 61.790 66.667 0.00 0.00 0.00 3.41
3905 4927 3.106054 CCCTCCTCATCCAGATATCCTG 58.894 54.545 0.00 0.00 42.55 3.86
3906 4928 2.561755 GCCCTCCTCATCCAGATATCCT 60.562 54.545 0.00 0.00 0.00 3.24
3907 4929 1.836802 GCCCTCCTCATCCAGATATCC 59.163 57.143 0.00 0.00 0.00 2.59
3908 4930 1.836802 GGCCCTCCTCATCCAGATATC 59.163 57.143 0.00 0.00 0.00 1.63
3909 4931 1.898990 CGGCCCTCCTCATCCAGATAT 60.899 57.143 0.00 0.00 0.00 1.63
3910 4932 0.542938 CGGCCCTCCTCATCCAGATA 60.543 60.000 0.00 0.00 0.00 1.98
3911 4933 1.840650 CGGCCCTCCTCATCCAGAT 60.841 63.158 0.00 0.00 0.00 2.90
3912 4934 2.444706 CGGCCCTCCTCATCCAGA 60.445 66.667 0.00 0.00 0.00 3.86
3913 4935 2.444706 TCGGCCCTCCTCATCCAG 60.445 66.667 0.00 0.00 0.00 3.86
3914 4936 2.444706 CTCGGCCCTCCTCATCCA 60.445 66.667 0.00 0.00 0.00 3.41
3915 4937 3.934962 GCTCGGCCCTCCTCATCC 61.935 72.222 0.00 0.00 0.00 3.51
3916 4938 4.292178 CGCTCGGCCCTCCTCATC 62.292 72.222 0.00 0.00 0.00 2.92
3919 4941 4.516195 GAACGCTCGGCCCTCCTC 62.516 72.222 0.00 0.00 0.00 3.71
3921 4943 2.234913 TTAAGAACGCTCGGCCCTCC 62.235 60.000 0.00 0.00 0.00 4.30
3922 4944 1.082679 GTTAAGAACGCTCGGCCCTC 61.083 60.000 0.00 0.00 0.00 4.30
3923 4945 1.079336 GTTAAGAACGCTCGGCCCT 60.079 57.895 0.00 0.00 0.00 5.19
3924 4946 1.079336 AGTTAAGAACGCTCGGCCC 60.079 57.895 0.00 0.00 36.23 5.80
3925 4947 0.108756 AGAGTTAAGAACGCTCGGCC 60.109 55.000 0.00 0.00 36.84 6.13
3926 4948 1.390463 CAAGAGTTAAGAACGCTCGGC 59.610 52.381 0.00 0.00 40.79 5.54
3927 4949 2.673833 ACAAGAGTTAAGAACGCTCGG 58.326 47.619 0.00 0.00 40.79 4.63
3928 4950 3.120991 CCAACAAGAGTTAAGAACGCTCG 60.121 47.826 0.00 0.00 40.79 5.03
3929 4951 4.056050 TCCAACAAGAGTTAAGAACGCTC 58.944 43.478 0.00 0.00 40.79 5.03
3930 4952 4.058817 CTCCAACAAGAGTTAAGAACGCT 58.941 43.478 0.00 0.00 43.62 5.07
3931 4953 4.056050 TCTCCAACAAGAGTTAAGAACGC 58.944 43.478 0.00 0.00 35.85 4.84
3932 4954 4.686554 CCTCTCCAACAAGAGTTAAGAACG 59.313 45.833 0.69 0.00 41.06 3.95
3933 4955 4.998033 CCCTCTCCAACAAGAGTTAAGAAC 59.002 45.833 0.69 0.00 41.06 3.01
3934 4956 4.505039 GCCCTCTCCAACAAGAGTTAAGAA 60.505 45.833 0.69 0.00 41.06 2.52
3935 4957 3.008049 GCCCTCTCCAACAAGAGTTAAGA 59.992 47.826 0.69 0.00 41.06 2.10
3936 4958 3.339141 GCCCTCTCCAACAAGAGTTAAG 58.661 50.000 0.69 0.00 41.06 1.85
3937 4959 2.039879 GGCCCTCTCCAACAAGAGTTAA 59.960 50.000 0.00 0.00 41.06 2.01
3938 4960 1.628846 GGCCCTCTCCAACAAGAGTTA 59.371 52.381 0.00 0.00 41.06 2.24
3939 4961 0.402121 GGCCCTCTCCAACAAGAGTT 59.598 55.000 0.00 0.00 41.06 3.01
3940 4962 0.768221 TGGCCCTCTCCAACAAGAGT 60.768 55.000 0.00 0.00 41.06 3.24
3941 4963 0.622665 ATGGCCCTCTCCAACAAGAG 59.377 55.000 0.00 0.00 42.09 2.85
3942 4964 1.004745 GAATGGCCCTCTCCAACAAGA 59.995 52.381 0.00 0.00 39.96 3.02
3943 4965 1.467920 GAATGGCCCTCTCCAACAAG 58.532 55.000 0.00 0.00 39.96 3.16
3944 4966 0.039618 GGAATGGCCCTCTCCAACAA 59.960 55.000 0.00 0.00 39.96 2.83
3945 4967 1.139498 TGGAATGGCCCTCTCCAACA 61.139 55.000 13.68 0.00 39.96 3.33
3946 4968 0.259938 ATGGAATGGCCCTCTCCAAC 59.740 55.000 18.50 0.00 42.41 3.77
3947 4969 0.552848 GATGGAATGGCCCTCTCCAA 59.447 55.000 18.50 5.80 42.41 3.53
3948 4970 0.624206 TGATGGAATGGCCCTCTCCA 60.624 55.000 17.29 17.29 43.26 3.86
3949 4971 0.552848 TTGATGGAATGGCCCTCTCC 59.447 55.000 0.00 3.83 32.94 3.71
3950 4972 2.442236 TTTGATGGAATGGCCCTCTC 57.558 50.000 0.00 0.00 32.94 3.20
3951 4973 2.925966 TTTTGATGGAATGGCCCTCT 57.074 45.000 0.00 0.00 32.94 3.69
3952 4974 3.960102 TGTATTTTGATGGAATGGCCCTC 59.040 43.478 0.00 0.00 34.97 4.30
3953 4975 3.706086 GTGTATTTTGATGGAATGGCCCT 59.294 43.478 0.00 0.00 34.97 5.19
3954 4976 3.181466 GGTGTATTTTGATGGAATGGCCC 60.181 47.826 0.00 0.00 34.97 5.80
3955 4977 3.450457 TGGTGTATTTTGATGGAATGGCC 59.550 43.478 0.00 0.00 37.10 5.36
3956 4978 4.734398 TGGTGTATTTTGATGGAATGGC 57.266 40.909 0.00 0.00 0.00 4.40
3957 4979 9.664332 TTAAAATGGTGTATTTTGATGGAATGG 57.336 29.630 7.63 0.00 45.90 3.16
3962 4984 9.814899 TGCTATTAAAATGGTGTATTTTGATGG 57.185 29.630 10.68 9.35 45.90 3.51
3991 5013 8.730680 CCTAGCACTAATGTAAACACTGATTTT 58.269 33.333 0.00 0.00 0.00 1.82
3992 5014 7.148239 GCCTAGCACTAATGTAAACACTGATTT 60.148 37.037 0.00 0.00 0.00 2.17
3993 5015 6.316390 GCCTAGCACTAATGTAAACACTGATT 59.684 38.462 0.00 0.00 0.00 2.57
3994 5016 5.817816 GCCTAGCACTAATGTAAACACTGAT 59.182 40.000 0.00 0.00 0.00 2.90
3995 5017 5.175859 GCCTAGCACTAATGTAAACACTGA 58.824 41.667 0.00 0.00 0.00 3.41
3996 5018 4.332819 GGCCTAGCACTAATGTAAACACTG 59.667 45.833 0.00 0.00 0.00 3.66
3997 5019 4.225267 AGGCCTAGCACTAATGTAAACACT 59.775 41.667 1.29 0.00 0.00 3.55
3998 5020 4.514401 AGGCCTAGCACTAATGTAAACAC 58.486 43.478 1.29 0.00 0.00 3.32
3999 5021 4.837093 AGGCCTAGCACTAATGTAAACA 57.163 40.909 1.29 0.00 0.00 2.83
4000 5022 7.803279 ATTTAGGCCTAGCACTAATGTAAAC 57.197 36.000 13.36 0.00 0.00 2.01
4001 5023 9.555727 CTAATTTAGGCCTAGCACTAATGTAAA 57.444 33.333 13.36 1.81 0.00 2.01
4002 5024 8.711170 ACTAATTTAGGCCTAGCACTAATGTAA 58.289 33.333 13.36 0.36 0.00 2.41
4003 5025 8.148351 CACTAATTTAGGCCTAGCACTAATGTA 58.852 37.037 13.36 4.77 0.00 2.29
4004 5026 6.992715 CACTAATTTAGGCCTAGCACTAATGT 59.007 38.462 13.36 2.41 0.00 2.71
4005 5027 7.171678 GTCACTAATTTAGGCCTAGCACTAATG 59.828 40.741 13.36 7.90 0.00 1.90
4006 5028 7.147549 TGTCACTAATTTAGGCCTAGCACTAAT 60.148 37.037 13.36 6.70 0.00 1.73
4007 5029 6.155565 TGTCACTAATTTAGGCCTAGCACTAA 59.844 38.462 13.36 4.31 0.00 2.24
4008 5030 5.659525 TGTCACTAATTTAGGCCTAGCACTA 59.340 40.000 13.36 3.03 0.00 2.74
4009 5031 4.469945 TGTCACTAATTTAGGCCTAGCACT 59.530 41.667 13.36 1.94 0.00 4.40
4010 5032 4.766375 TGTCACTAATTTAGGCCTAGCAC 58.234 43.478 13.36 4.11 0.00 4.40
4011 5033 5.630415 ATGTCACTAATTTAGGCCTAGCA 57.370 39.130 13.36 4.28 0.00 3.49
4012 5034 7.171678 CACTAATGTCACTAATTTAGGCCTAGC 59.828 40.741 13.36 0.00 0.00 3.42
4013 5035 7.657761 CCACTAATGTCACTAATTTAGGCCTAG 59.342 40.741 13.36 5.13 0.00 3.02
4014 5036 7.419750 CCCACTAATGTCACTAATTTAGGCCTA 60.420 40.741 8.91 8.91 0.00 3.93
4015 5037 6.357367 CCACTAATGTCACTAATTTAGGCCT 58.643 40.000 11.78 11.78 0.00 5.19
4016 5038 5.531287 CCCACTAATGTCACTAATTTAGGCC 59.469 44.000 8.26 0.00 0.00 5.19
4017 5039 5.531287 CCCCACTAATGTCACTAATTTAGGC 59.469 44.000 8.26 0.00 0.00 3.93
4018 5040 6.062095 CCCCCACTAATGTCACTAATTTAGG 58.938 44.000 8.26 0.00 0.00 2.69
4046 5068 3.424105 AGCAAGGATCCTGCCCCC 61.424 66.667 24.08 9.82 0.00 5.40
4047 5069 2.123982 CAGCAAGGATCCTGCCCC 60.124 66.667 24.08 11.27 0.00 5.80
4048 5070 2.123982 CCAGCAAGGATCCTGCCC 60.124 66.667 24.08 13.33 41.22 5.36
4049 5071 1.452833 GACCAGCAAGGATCCTGCC 60.453 63.158 24.08 15.41 41.22 4.85
4050 5072 1.452833 GGACCAGCAAGGATCCTGC 60.453 63.158 17.02 20.00 41.22 4.85
4051 5073 1.225704 GGGACCAGCAAGGATCCTG 59.774 63.158 17.02 10.82 41.22 3.86
4052 5074 3.746957 GGGACCAGCAAGGATCCT 58.253 61.111 9.02 9.02 41.22 3.24
4080 5102 3.200593 GCTCGCCTCCATGCAGTG 61.201 66.667 0.00 0.00 0.00 3.66
4081 5103 3.397439 AGCTCGCCTCCATGCAGT 61.397 61.111 0.00 0.00 0.00 4.40
4082 5104 2.895865 CAGCTCGCCTCCATGCAG 60.896 66.667 0.00 0.00 0.00 4.41
4083 5105 4.478371 CCAGCTCGCCTCCATGCA 62.478 66.667 0.00 0.00 0.00 3.96
4108 5130 3.164977 TGCTCCCGGACAACCACA 61.165 61.111 0.73 0.00 35.59 4.17
4149 5171 3.576356 GTGGCCCACATCATCGCG 61.576 66.667 9.55 0.00 34.08 5.87
4150 5172 2.045708 TTGTGGCCCACATCATCGC 61.046 57.895 19.05 0.00 44.16 4.58
4151 5173 1.802636 GTTGTGGCCCACATCATCG 59.197 57.895 19.05 0.00 44.16 3.84
4152 5174 1.656818 CCGTTGTGGCCCACATCATC 61.657 60.000 19.05 7.96 44.16 2.92
4154 5176 2.282110 CCGTTGTGGCCCACATCA 60.282 61.111 19.05 0.00 44.16 3.07
4197 5220 4.680237 TCCTGTCTTGGCGCCACG 62.680 66.667 32.95 29.14 0.00 4.94
4198 5221 1.675641 ATTCCTGTCTTGGCGCCAC 60.676 57.895 32.95 19.47 0.00 5.01
4199 5222 1.675310 CATTCCTGTCTTGGCGCCA 60.675 57.895 29.03 29.03 0.00 5.69
4200 5223 0.749454 ATCATTCCTGTCTTGGCGCC 60.749 55.000 22.73 22.73 0.00 6.53
4201 5224 0.659957 GATCATTCCTGTCTTGGCGC 59.340 55.000 0.00 0.00 0.00 6.53
4202 5225 0.933097 CGATCATTCCTGTCTTGGCG 59.067 55.000 0.00 0.00 0.00 5.69
4203 5226 1.667724 CACGATCATTCCTGTCTTGGC 59.332 52.381 0.00 0.00 0.00 4.52
4204 5227 2.283298 CCACGATCATTCCTGTCTTGG 58.717 52.381 0.00 0.00 0.00 3.61
4205 5228 1.667724 GCCACGATCATTCCTGTCTTG 59.332 52.381 0.00 0.00 0.00 3.02
4206 5229 1.740380 CGCCACGATCATTCCTGTCTT 60.740 52.381 0.00 0.00 0.00 3.01
4207 5230 0.179100 CGCCACGATCATTCCTGTCT 60.179 55.000 0.00 0.00 0.00 3.41
4208 5231 1.766143 GCGCCACGATCATTCCTGTC 61.766 60.000 0.00 0.00 0.00 3.51
4209 5232 1.815421 GCGCCACGATCATTCCTGT 60.815 57.895 0.00 0.00 0.00 4.00
4210 5233 2.537560 GGCGCCACGATCATTCCTG 61.538 63.158 24.80 0.00 0.00 3.86
4211 5234 2.203070 GGCGCCACGATCATTCCT 60.203 61.111 24.80 0.00 0.00 3.36
4212 5235 2.051804 CTTGGCGCCACGATCATTCC 62.052 60.000 32.95 0.00 0.00 3.01
4213 5236 1.089481 TCTTGGCGCCACGATCATTC 61.089 55.000 32.95 0.00 0.00 2.67
4214 5237 0.464373 ATCTTGGCGCCACGATCATT 60.464 50.000 35.41 19.81 30.57 2.57
4215 5238 0.464373 AATCTTGGCGCCACGATCAT 60.464 50.000 38.91 26.38 34.49 2.45
4216 5239 0.676466 AAATCTTGGCGCCACGATCA 60.676 50.000 38.91 21.59 34.49 2.92
4217 5240 1.261619 CTAAATCTTGGCGCCACGATC 59.738 52.381 38.91 10.44 34.49 3.69
4218 5241 1.299541 CTAAATCTTGGCGCCACGAT 58.700 50.000 35.41 35.41 36.65 3.73
4222 5245 0.679640 CCACCTAAATCTTGGCGCCA 60.680 55.000 29.03 29.03 0.00 5.69
4314 5342 5.220989 GCAGAATAATCATCATGCGCCATAT 60.221 40.000 4.18 0.00 0.00 1.78
4315 5343 4.095334 GCAGAATAATCATCATGCGCCATA 59.905 41.667 4.18 0.00 0.00 2.74
4316 5344 3.119602 GCAGAATAATCATCATGCGCCAT 60.120 43.478 4.18 0.00 0.00 4.40
4317 5345 2.227149 GCAGAATAATCATCATGCGCCA 59.773 45.455 4.18 0.00 0.00 5.69
4348 5383 5.406175 CGGTACTACGATTCTGGTTGAAAAA 59.594 40.000 0.00 0.00 38.29 1.94
4349 5384 4.925054 CGGTACTACGATTCTGGTTGAAAA 59.075 41.667 0.00 0.00 38.29 2.29
4353 5388 2.805845 CCGGTACTACGATTCTGGTTG 58.194 52.381 0.00 0.00 35.47 3.77
4354 5389 1.135721 GCCGGTACTACGATTCTGGTT 59.864 52.381 1.90 0.00 35.47 3.67
4371 5406 1.441732 GGTTGCCCTATTAACCGCCG 61.442 60.000 0.00 0.00 37.23 6.46
4380 5415 7.448469 GTCATTGTATAGATTTGGTTGCCCTAT 59.552 37.037 0.00 0.00 0.00 2.57
4387 5422 8.095452 AGGAGAGTCATTGTATAGATTTGGTT 57.905 34.615 0.00 0.00 0.00 3.67
4445 5480 7.248976 TCTGTGGGGTGATAGATACATTATCT 58.751 38.462 1.49 1.49 46.67 1.98
4446 5481 7.482169 TCTGTGGGGTGATAGATACATTATC 57.518 40.000 0.00 0.00 35.41 1.75
4447 5482 7.872061 TTCTGTGGGGTGATAGATACATTAT 57.128 36.000 0.00 0.00 0.00 1.28
4448 5483 7.684317 TTTCTGTGGGGTGATAGATACATTA 57.316 36.000 0.00 0.00 0.00 1.90
4449 5484 6.575244 TTTCTGTGGGGTGATAGATACATT 57.425 37.500 0.00 0.00 0.00 2.71
4450 5485 6.770286 ATTTCTGTGGGGTGATAGATACAT 57.230 37.500 0.00 0.00 0.00 2.29
4451 5486 6.157820 TGAATTTCTGTGGGGTGATAGATACA 59.842 38.462 0.00 0.00 0.00 2.29
4452 5487 6.591935 TGAATTTCTGTGGGGTGATAGATAC 58.408 40.000 0.00 0.00 0.00 2.24
4453 5488 6.823286 TGAATTTCTGTGGGGTGATAGATA 57.177 37.500 0.00 0.00 0.00 1.98
4454 5489 5.715439 TGAATTTCTGTGGGGTGATAGAT 57.285 39.130 0.00 0.00 0.00 1.98
4455 5490 5.512942 TTGAATTTCTGTGGGGTGATAGA 57.487 39.130 0.00 0.00 0.00 1.98
4456 5491 6.183360 GGATTTGAATTTCTGTGGGGTGATAG 60.183 42.308 0.00 0.00 0.00 2.08
4465 5500 4.383649 CGTGCTTGGATTTGAATTTCTGTG 59.616 41.667 0.00 0.00 0.00 3.66
4543 5596 1.424403 GTGTAGCGTGTACATGTGCA 58.576 50.000 13.02 13.02 0.00 4.57
4549 5602 2.098607 GCTCATAGGTGTAGCGTGTACA 59.901 50.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.